Query 036401
Match_columns 1154
No_of_seqs 435 out of 3123
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 21:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1w_A Structural maintenance 100.0 6.8E-38 2.3E-42 362.7 28.8 170 7-177 1-182 (430)
2 4ad8_A DNA repair protein RECN 100.0 8E-28 2.7E-32 284.3 41.3 140 7-171 37-177 (517)
3 3kta_B Chromosome segregation 100.0 8.9E-29 3E-33 242.2 15.5 145 990-1153 1-145 (173)
4 3kta_A Chromosome segregation 99.9 8.3E-27 2.8E-31 236.7 18.2 173 7-182 1-181 (182)
5 3qks_A DNA double-strand break 99.9 2.1E-25 7.3E-30 228.0 18.3 169 8-189 1-182 (203)
6 1e69_A Chromosome segregation 99.9 2E-23 6.9E-28 231.0 15.3 158 8-169 1-159 (322)
7 3auy_A DNA double-strand break 99.9 3E-22 1E-26 226.1 21.3 171 6-190 1-178 (371)
8 1f2t_A RAD50 ABC-ATPase; DNA d 99.9 2.4E-22 8.3E-27 193.5 12.5 134 8-155 1-149 (149)
9 3qkt_A DNA double-strand break 99.8 2.8E-20 9.5E-25 207.2 13.5 158 8-179 1-172 (339)
10 2o5v_A DNA replication and rep 99.7 5.6E-17 1.9E-21 178.7 15.5 139 7-170 3-141 (359)
11 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 5E-16 1.7E-20 173.8 16.0 155 8-172 1-168 (365)
12 1qhl_A Protein (cell division 99.7 2.4E-17 8.4E-22 168.8 3.5 175 5-182 2-215 (227)
13 2wd5_A Structural maintenance 99.6 6.5E-17 2.2E-21 168.5 3.2 161 478-639 13-224 (233)
14 4aby_A DNA repair protein RECN 99.6 2.7E-15 9.2E-20 173.6 15.2 138 8-170 38-176 (415)
15 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 2.8E-15 9.6E-20 142.5 11.9 129 1001-1152 10-140 (148)
16 1e69_A Chromosome segregation 99.6 2.3E-15 8E-20 166.3 12.7 99 1042-1153 202-300 (322)
17 3l51_B Structural maintenance 99.6 4.5E-15 1.5E-19 144.4 11.4 95 515-611 15-160 (166)
18 3nwc_A SMC protein; structural 99.5 9.5E-15 3.2E-19 144.0 9.3 96 515-613 32-170 (189)
19 3l51_A Structural maintenance 99.5 7.9E-15 2.7E-19 142.2 8.1 93 517-609 15-161 (161)
20 3tif_A Uncharacterized ABC tra 99.5 9.6E-15 3.3E-19 152.3 6.5 82 1055-1153 141-222 (235)
21 2pcj_A ABC transporter, lipopr 99.5 2.6E-14 9E-19 147.9 7.0 81 1055-1153 136-216 (224)
22 2wd5_B Structural maintenance 99.5 1.8E-13 6.1E-18 141.1 11.1 96 515-612 45-187 (213)
23 3gfo_A Cobalt import ATP-bindi 99.4 5.8E-14 2E-18 149.1 6.5 82 1055-1153 139-221 (275)
24 2olj_A Amino acid ABC transpor 99.4 8.3E-14 2.8E-18 147.0 7.4 81 1055-1153 155-236 (263)
25 1b0u_A Histidine permease; ABC 99.4 8.6E-14 2.9E-18 147.6 7.2 81 1055-1153 149-230 (262)
26 2onk_A Molybdate/tungstate ABC 99.4 1.2E-13 4.1E-18 144.0 7.9 82 1055-1153 122-204 (240)
27 1ji0_A ABC transporter; ATP bi 99.4 1.2E-13 4.2E-18 144.5 8.0 81 1055-1153 135-216 (240)
28 3tui_C Methionine import ATP-b 99.4 8.6E-14 3E-18 151.9 6.8 82 1055-1153 159-241 (366)
29 3qkt_A DNA double-strand break 99.4 3.1E-13 1.1E-17 150.3 11.5 91 1051-1153 240-332 (339)
30 4g1u_C Hemin import ATP-bindin 99.4 1.2E-13 4.1E-18 146.4 7.4 87 1054-1153 136-225 (266)
31 1g6h_A High-affinity branched- 99.4 1.1E-13 3.7E-18 146.6 6.9 82 1054-1153 148-230 (257)
32 2d2e_A SUFC protein; ABC-ATPas 99.4 1.8E-13 6.1E-18 144.4 8.4 81 1055-1153 138-221 (250)
33 2nq2_C Hypothetical ABC transp 99.4 1.5E-13 5.1E-18 144.7 7.8 81 1055-1152 124-205 (253)
34 2ff7_A Alpha-hemolysin translo 99.4 1.4E-13 4.7E-18 144.6 7.3 80 1055-1153 141-220 (247)
35 1vpl_A ABC transporter, ATP-bi 99.4 1.4E-13 5E-18 144.7 7.5 81 1055-1153 142-223 (256)
36 2zu0_C Probable ATP-dependent 99.4 2E-13 6.8E-18 145.2 8.6 81 1055-1153 159-242 (267)
37 2ghi_A Transport protein; mult 99.4 1.7E-13 5.9E-18 145.0 8.1 80 1055-1153 151-230 (260)
38 2ixe_A Antigen peptide transpo 99.4 2.2E-13 7.5E-18 145.1 8.6 82 1055-1153 152-233 (271)
39 4aby_A DNA repair protein RECN 99.4 2.2E-12 7.7E-17 149.0 17.9 79 1054-1149 289-370 (415)
40 1mv5_A LMRA, multidrug resista 99.4 1.6E-13 5.4E-18 144.2 6.0 80 1055-1153 135-214 (243)
41 3fvq_A Fe(3+) IONS import ATP- 99.4 2.3E-13 7.8E-18 148.7 7.3 83 1054-1153 133-216 (359)
42 2qi9_C Vitamin B12 import ATP- 99.4 2.3E-13 8E-18 142.5 7.1 81 1055-1153 122-210 (249)
43 3nh6_A ATP-binding cassette SU 99.4 3.1E-13 1E-17 145.3 8.1 80 1055-1153 186-265 (306)
44 3rlf_A Maltose/maltodextrin im 99.4 2.1E-13 7E-18 150.1 6.9 82 1055-1153 129-211 (381)
45 2yz2_A Putative ABC transporte 99.4 1.9E-13 6.6E-18 145.4 6.4 82 1054-1153 133-215 (266)
46 3d31_A Sulfate/molybdate ABC t 99.4 3.5E-13 1.2E-17 147.5 8.1 83 1054-1153 122-205 (348)
47 2it1_A 362AA long hypothetical 99.4 3.2E-13 1.1E-17 148.5 7.8 82 1055-1153 129-211 (362)
48 2cbz_A Multidrug resistance-as 99.4 3.2E-13 1.1E-17 140.9 7.3 80 1055-1153 123-205 (237)
49 2ihy_A ABC transporter, ATP-bi 99.4 3E-13 1E-17 144.3 6.9 81 1055-1153 157-240 (279)
50 1z47_A CYSA, putative ABC-tran 99.4 3E-13 1E-17 148.0 6.7 82 1055-1153 141-223 (355)
51 3auy_A DNA double-strand break 99.4 9.2E-12 3.1E-16 140.3 18.8 96 1043-1152 265-363 (371)
52 1oxx_K GLCV, glucose, ABC tran 99.4 3.8E-13 1.3E-17 148.0 7.2 82 1055-1153 136-218 (353)
53 2yyz_A Sugar ABC transporter, 99.4 3.8E-13 1.3E-17 147.7 7.1 82 1055-1153 129-211 (359)
54 2pjz_A Hypothetical protein ST 99.4 7.7E-13 2.6E-17 139.6 8.7 78 1055-1153 124-203 (263)
55 2pze_A Cystic fibrosis transme 99.4 5.7E-13 2E-17 138.4 7.4 79 1056-1153 127-206 (229)
56 1v43_A Sugar-binding transport 99.4 4.4E-13 1.5E-17 148.0 6.7 83 1054-1153 136-219 (372)
57 1g29_1 MALK, maltose transport 99.4 5.3E-13 1.8E-17 147.8 7.3 82 1055-1153 135-217 (372)
58 1gxl_A SMC, chromosome segrega 99.3 2.9E-12 1E-16 132.6 12.0 96 515-611 40-186 (213)
59 1sgw_A Putative ABC transporte 99.3 2.4E-13 8.2E-18 138.6 2.9 75 1055-1145 129-204 (214)
60 2bbs_A Cystic fibrosis transme 99.3 1.6E-12 5.4E-17 139.2 7.1 79 1056-1153 156-235 (290)
61 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 2.4E-12 8.1E-17 144.0 8.4 86 1054-1153 274-361 (365)
62 3gd7_A Fusion complex of cysti 99.3 1.9E-12 6.6E-17 143.8 7.4 78 1057-1153 153-230 (390)
63 3qf4_A ABC transporter, ATP-bi 99.2 1.5E-11 5E-16 146.9 9.0 80 1055-1153 475-554 (587)
64 3ozx_A RNAse L inhibitor; ATP 99.2 1.6E-11 5.4E-16 143.6 8.3 81 1054-1149 380-461 (538)
65 3b5x_A Lipid A export ATP-bind 99.2 1.8E-11 6.2E-16 146.5 8.8 80 1055-1153 476-555 (582)
66 3j16_B RLI1P; ribosome recycli 99.2 1.3E-11 4.5E-16 145.8 6.9 84 1054-1152 462-546 (608)
67 4a82_A Cystic fibrosis transme 99.2 1.8E-11 6.3E-16 146.1 8.1 80 1055-1153 473-552 (578)
68 3bk7_A ABC transporter ATP-bin 99.2 2.3E-11 7.8E-16 144.2 8.5 79 1053-1147 222-301 (607)
69 3b60_A Lipid A export ATP-bind 99.2 1.8E-11 6.2E-16 146.5 7.4 79 1056-1153 477-555 (582)
70 2yl4_A ATP-binding cassette SU 99.2 2.2E-11 7.7E-16 146.1 8.1 79 1056-1153 480-558 (595)
71 1yqt_A RNAse L inhibitor; ATP- 99.2 2.2E-11 7.6E-16 142.9 7.7 79 1053-1147 152-231 (538)
72 3qf4_B Uncharacterized ABC tra 99.2 2.1E-11 7.1E-16 146.1 7.4 79 1056-1153 488-566 (598)
73 3j16_B RLI1P; ribosome recycli 99.2 4.5E-11 1.5E-15 141.2 9.7 80 1053-1148 215-295 (608)
74 1gxj_A SMC, chromosome segrega 99.1 4.2E-11 1.4E-15 120.5 7.7 96 515-611 28-174 (186)
75 3ux8_A Excinuclease ABC, A sub 99.1 3.5E-11 1.2E-15 146.7 8.4 78 1053-1146 196-275 (670)
76 3bk7_A ABC transporter ATP-bin 99.1 4.7E-11 1.6E-15 141.4 8.5 80 1054-1148 466-546 (607)
77 3ozx_A RNAse L inhibitor; ATP 99.1 7.1E-11 2.4E-15 138.0 9.6 77 1054-1147 133-210 (538)
78 1yqt_A RNAse L inhibitor; ATP- 99.1 5E-11 1.7E-15 140.0 7.5 80 1054-1148 396-476 (538)
79 3ux8_A Excinuclease ABC, A sub 99.1 6.1E-11 2.1E-15 144.7 7.8 78 1055-1145 539-616 (670)
80 3pih_A Uvrabc system protein A 99.1 1.1E-10 3.6E-15 143.1 9.3 77 1055-1147 460-538 (916)
81 2r6f_A Excinuclease ABC subuni 99.1 1E-10 3.5E-15 141.6 8.9 77 1055-1146 500-577 (972)
82 3pih_A Uvrabc system protein A 99.1 1E-10 3.5E-15 143.2 7.0 80 1055-1147 801-880 (916)
83 2ygr_A Uvrabc system protein A 99.1 1.5E-10 5E-15 140.9 8.2 78 1055-1147 517-595 (993)
84 2iw3_A Elongation factor 3A; a 99.0 1.8E-10 6.3E-15 140.8 8.5 78 1055-1153 897-975 (986)
85 2r6f_A Excinuclease ABC subuni 99.0 1.4E-10 4.8E-15 140.4 6.8 80 1055-1147 841-920 (972)
86 2iw3_A Elongation factor 3A; a 99.0 2.3E-10 8E-15 140.0 8.5 79 1054-1153 543-622 (986)
87 2o5v_A DNA replication and rep 99.0 1.8E-09 6.2E-14 118.9 13.9 143 981-1147 173-340 (359)
88 4f4c_A Multidrug resistance pr 99.0 3E-10 1E-14 147.9 8.6 78 1057-1153 1215-1292(1321)
89 2ygr_A Uvrabc system protein A 99.0 2.5E-10 8.6E-15 138.8 6.7 80 1055-1147 859-938 (993)
90 2vf7_A UVRA2, excinuclease ABC 99.0 3.9E-10 1.3E-14 136.9 8.2 77 1055-1147 375-453 (842)
91 1c1g_A Tropomyosin; contractIl 99.0 4.1E-06 1.4E-10 90.7 39.2 19 413-431 177-195 (284)
92 2vf7_A UVRA2, excinuclease ABC 99.0 2.5E-10 8.5E-15 138.6 5.8 80 1055-1147 726-805 (842)
93 4f4c_A Multidrug resistance pr 98.9 5.1E-10 1.7E-14 145.8 7.6 78 1057-1153 552-629 (1321)
94 3g5u_A MCG1178, multidrug resi 98.9 5.5E-10 1.9E-14 145.1 7.3 79 1056-1153 1168-1246(1284)
95 3g5u_A MCG1178, multidrug resi 98.9 7.5E-10 2.6E-14 143.8 8.4 79 1056-1153 523-601 (1284)
96 1i84_S Smooth muscle myosin he 98.9 4.1E-09 1.4E-13 135.8 11.6 11 127-137 753-763 (1184)
97 4gp7_A Metallophosphoesterase; 98.8 2.1E-09 7.1E-14 106.4 4.3 71 1059-1145 83-169 (171)
98 1i84_S Smooth muscle myosin he 98.7 5.5E-08 1.9E-12 125.5 15.8 14 9-22 459-472 (1184)
99 1ye8_A Protein THEP1, hypothet 98.7 1.3E-08 4.3E-13 100.8 6.5 78 1054-1150 71-163 (178)
100 2npi_A Protein CLP1; CLP1-PCF1 98.5 6.8E-08 2.3E-12 110.3 4.6 67 1057-1143 233-313 (460)
101 3euj_A Chromosome partition pr 98.0 1.7E-05 5.9E-10 90.1 12.1 77 1056-1149 376-465 (483)
102 2olj_A Amino acid ABC transpor 98.0 3.5E-06 1.2E-10 88.7 4.8 45 13-57 25-76 (263)
103 4g1u_C Hemin import ATP-bindin 98.0 3.4E-06 1.2E-10 89.1 4.7 48 13-60 12-66 (266)
104 3b85_A Phosphate starvation-in 98.0 7.7E-07 2.6E-11 90.2 -1.0 55 1063-1139 108-162 (208)
105 1b0u_A Histidine permease; ABC 97.9 6.1E-06 2.1E-10 87.1 4.9 43 13-55 7-56 (262)
106 1tf7_A KAIC; homohexamer, hexa 97.9 7.7E-06 2.6E-10 96.5 6.1 75 1056-1147 350-440 (525)
107 1ji0_A ABC transporter; ATP bi 97.9 7.3E-06 2.5E-10 85.4 4.2 45 13-57 7-58 (240)
108 1g6h_A High-affinity branched- 97.8 8.3E-06 2.8E-10 86.0 4.5 46 13-58 8-60 (257)
109 2ihy_A ABC transporter, ATP-bi 97.8 7.8E-06 2.7E-10 86.9 3.9 46 13-58 22-74 (279)
110 3gfo_A Cobalt import ATP-bindi 97.8 1E-05 3.5E-10 85.6 4.1 47 13-59 8-62 (275)
111 3fvq_A Fe(3+) IONS import ATP- 97.7 1.8E-05 6.1E-10 86.5 5.2 43 13-55 5-54 (359)
112 2pcj_A ABC transporter, lipopr 97.7 1.3E-05 4.5E-10 82.4 4.0 44 13-56 5-55 (224)
113 1sgw_A Putative ABC transporte 97.7 1.5E-05 5.1E-10 81.0 4.3 44 12-56 10-60 (214)
114 3thx_A DNA mismatch repair pro 97.7 2.8E-05 9.6E-10 96.1 6.9 79 1056-1147 718-797 (934)
115 1vpl_A ABC transporter, ATP-bi 97.7 2E-05 6.9E-10 82.5 4.7 45 13-57 16-67 (256)
116 3thx_B DNA mismatch repair pro 97.7 2.2E-05 7.6E-10 96.6 4.8 75 1054-1144 730-805 (918)
117 2d2e_A SUFC protein; ABC-ATPas 97.6 3E-05 1E-09 81.3 4.6 42 13-54 4-52 (250)
118 3rlf_A Maltose/maltodextrin im 97.6 3.8E-05 1.3E-09 84.5 5.2 43 13-55 4-53 (381)
119 2zu0_C Probable ATP-dependent 97.6 4.3E-05 1.5E-09 80.9 5.4 42 13-54 21-69 (267)
120 1v43_A Sugar-binding transport 97.6 5.3E-05 1.8E-09 83.6 6.2 43 13-55 12-61 (372)
121 1mv5_A LMRA, multidrug resista 97.6 3.4E-05 1.2E-09 80.5 4.4 29 32-60 29-57 (243)
122 2cbz_A Multidrug resistance-as 97.6 3.5E-05 1.2E-09 80.0 4.4 24 32-55 32-55 (237)
123 2ff7_A Alpha-hemolysin translo 97.6 3.9E-05 1.3E-09 80.2 4.2 48 11-58 6-62 (247)
124 2ixe_A Antigen peptide transpo 97.5 4.8E-05 1.6E-09 80.6 4.4 47 13-59 17-73 (271)
125 2yyz_A Sugar ABC transporter, 97.5 6.4E-05 2.2E-09 82.4 5.5 42 13-54 4-52 (359)
126 2it1_A 362AA long hypothetical 97.5 7E-05 2.4E-09 82.2 5.7 41 13-53 4-51 (362)
127 1kgd_A CASK, peripheral plasma 97.5 4.8E-05 1.6E-09 75.6 3.7 28 28-55 1-29 (180)
128 2qi9_C Vitamin B12 import ATP- 97.5 4.1E-05 1.4E-09 79.9 3.0 26 31-56 26-51 (249)
129 3b85_A Phosphate starvation-in 97.5 1.3E-05 4.6E-10 81.0 -0.7 24 31-54 22-45 (208)
130 2yz2_A Putative ABC transporte 97.5 7.1E-05 2.4E-09 79.2 4.6 25 32-56 34-58 (266)
131 1z47_A CYSA, putative ABC-tran 97.4 7.2E-05 2.5E-09 81.8 4.6 41 13-53 15-63 (355)
132 2ghi_A Transport protein; mult 97.4 6.9E-05 2.4E-09 78.9 4.3 43 13-55 18-70 (260)
133 1g29_1 MALK, maltose transport 97.4 8.3E-05 2.9E-09 82.2 5.1 41 13-53 4-51 (372)
134 1htw_A HI0065; nucleotide-bind 97.4 8.1E-05 2.8E-09 71.4 4.4 28 32-60 34-61 (158)
135 1tq4_A IIGP1, interferon-induc 97.4 1.8E-05 6.2E-10 88.5 -0.3 78 1060-1145 155-248 (413)
136 1s96_A Guanylate kinase, GMP k 97.4 6.6E-05 2.3E-09 76.7 3.8 27 29-55 14-40 (219)
137 3euj_A Chromosome partition pr 97.4 0.00015 5.2E-09 82.3 6.8 58 3-61 2-59 (483)
138 3tui_C Methionine import ATP-b 97.4 0.0001 3.4E-09 80.6 4.9 25 31-55 54-78 (366)
139 2pjz_A Hypothetical protein ST 97.4 7.1E-05 2.4E-09 78.7 3.6 29 31-60 30-58 (263)
140 2nq2_C Hypothetical ABC transp 97.4 7.8E-05 2.7E-09 78.1 3.9 44 13-56 5-56 (253)
141 3d31_A Sulfate/molybdate ABC t 97.4 7.4E-05 2.5E-09 81.7 3.8 40 13-53 2-48 (348)
142 3tif_A Uncharacterized ABC tra 97.4 5.7E-05 2E-09 78.2 2.7 29 31-59 31-59 (235)
143 2pze_A Cystic fibrosis transme 97.4 9.1E-05 3.1E-09 76.4 3.9 43 13-55 7-58 (229)
144 1oxx_K GLCV, glucose, ABC tran 97.3 6.2E-05 2.1E-09 82.7 2.5 41 13-53 4-53 (353)
145 3na7_A HP0958; flagellar bioge 97.3 0.017 5.7E-07 60.2 20.7 24 425-448 151-174 (256)
146 3na7_A HP0958; flagellar bioge 97.3 0.06 2.1E-06 56.0 24.2 11 504-514 176-186 (256)
147 2bbs_A Cystic fibrosis transme 97.3 9.7E-05 3.3E-09 78.8 3.0 25 31-55 64-88 (290)
148 3gd7_A Fusion complex of cysti 97.3 0.00016 5.3E-09 80.4 4.7 41 12-52 19-68 (390)
149 1z6g_A Guanylate kinase; struc 97.3 0.00012 4.1E-09 75.2 3.5 25 31-55 23-47 (218)
150 2onk_A Molybdate/tungstate ABC 97.3 0.00013 4.3E-09 75.7 3.7 28 32-59 25-52 (240)
151 1znw_A Guanylate kinase, GMP k 97.2 0.00016 5.3E-09 73.7 3.9 25 31-55 20-44 (207)
152 3nh6_A ATP-binding cassette SU 97.2 0.00011 3.7E-09 78.8 2.8 48 12-59 53-108 (306)
153 1ye8_A Protein THEP1, hypothet 97.2 0.00018 6E-09 70.9 3.6 24 33-56 2-25 (178)
154 3tr0_A Guanylate kinase, GMP k 97.1 0.00024 8.1E-09 72.4 3.9 24 32-55 8-31 (205)
155 4gp7_A Metallophosphoesterase; 97.1 0.00025 8.7E-09 69.5 3.9 19 32-50 10-28 (171)
156 1lvg_A Guanylate kinase, GMP k 97.1 0.00022 7.6E-09 71.9 3.2 24 32-55 5-28 (198)
157 3ney_A 55 kDa erythrocyte memb 97.1 0.00027 9.4E-09 70.0 3.8 30 26-55 13-43 (197)
158 3a00_A Guanylate kinase, GMP k 97.1 0.00024 8.1E-09 71.0 3.3 25 32-56 2-26 (186)
159 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00022 7.6E-09 77.9 2.8 62 1062-1146 225-286 (330)
160 1cr0_A DNA primase/helicase; R 97.0 0.00065 2.2E-08 73.6 6.5 76 1059-1150 129-235 (296)
161 3c8u_A Fructokinase; YP_612366 97.0 0.00035 1.2E-08 71.2 4.0 25 32-56 23-47 (208)
162 2eyu_A Twitching motility prot 97.0 0.0003 1E-08 74.0 3.4 25 31-55 25-49 (261)
163 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0014 4.8E-08 68.2 8.5 77 1059-1150 103-192 (235)
164 2jeo_A Uridine-cytidine kinase 97.0 0.00038 1.3E-08 73.0 3.8 25 33-57 27-51 (245)
165 2v9p_A Replication protein E1; 96.9 0.00044 1.5E-08 73.8 4.2 26 30-55 125-150 (305)
166 4eun_A Thermoresistant glucoki 96.9 0.00056 1.9E-08 69.2 4.2 27 31-57 29-55 (200)
167 2qag_B Septin-6, protein NEDD5 96.9 0.00031 1.1E-08 78.4 2.4 45 9-54 13-65 (427)
168 1ewq_A DNA mismatch repair pro 96.9 0.00068 2.3E-08 82.2 5.3 67 1058-1141 634-704 (765)
169 3asz_A Uridine kinase; cytidin 96.8 0.0005 1.7E-08 70.3 3.4 25 32-56 7-31 (211)
170 2ehv_A Hypothetical protein PH 96.8 0.00053 1.8E-08 72.4 3.4 23 31-53 30-52 (251)
171 2i3b_A HCR-ntpase, human cance 96.8 0.00065 2.2E-08 67.4 3.8 23 33-55 3-25 (189)
172 1wb9_A DNA mismatch repair pro 96.8 0.00057 2E-08 83.4 4.0 76 1056-1147 666-742 (800)
173 1zp6_A Hypothetical protein AT 96.8 0.0006 2.1E-08 68.4 3.2 24 32-55 10-33 (191)
174 2o8b_B DNA mismatch repair pro 96.7 0.00076 2.6E-08 84.6 4.6 74 1055-1144 847-922 (1022)
175 3lnc_A Guanylate kinase, GMP k 96.7 0.00046 1.6E-08 71.7 2.2 24 32-55 28-52 (231)
176 1znw_A Guanylate kinase, GMP k 96.7 0.0001 3.4E-09 75.2 -3.2 62 1080-1153 140-206 (207)
177 3aez_A Pantothenate kinase; tr 96.7 0.00088 3E-08 72.4 3.9 25 32-56 91-115 (312)
178 3tau_A Guanylate kinase, GMP k 96.7 0.00095 3.2E-08 67.9 3.9 26 31-56 8-33 (208)
179 2bdt_A BH3686; alpha-beta prot 96.6 0.001 3.5E-08 66.5 3.8 24 33-56 4-27 (189)
180 1rj9_A FTSY, signal recognitio 96.6 0.0011 3.8E-08 71.3 4.1 27 32-58 103-129 (304)
181 4a74_A DNA repair and recombin 96.6 0.00081 2.8E-08 69.8 3.1 24 32-55 26-49 (231)
182 2bbw_A Adenylate kinase 4, AK4 96.6 0.0011 3.7E-08 69.6 4.0 27 32-58 28-54 (246)
183 3jvv_A Twitching mobility prot 96.6 0.00097 3.3E-08 73.3 3.7 26 31-56 123-148 (356)
184 3vkg_A Dynein heavy chain, cyt 96.6 0.51 1.7E-05 65.6 30.3 17 561-577 2220-2238(3245)
185 3sop_A Neuronal-specific septi 96.6 0.00083 2.8E-08 71.0 3.0 27 33-59 4-30 (270)
186 2ehv_A Hypothetical protein PH 96.6 0.002 6.7E-08 67.9 5.9 57 1081-1149 135-207 (251)
187 1kag_A SKI, shikimate kinase I 96.5 0.0013 4.5E-08 64.6 3.9 26 32-57 5-30 (173)
188 3b9q_A Chloroplast SRP recepto 96.5 0.0011 3.8E-08 71.2 3.6 26 32-57 101-126 (302)
189 1sq5_A Pantothenate kinase; P- 96.5 0.0016 5.4E-08 70.7 4.5 24 33-56 82-105 (308)
190 3b5x_A Lipid A export ATP-bind 96.5 0.0016 5.6E-08 77.6 5.0 49 12-60 341-398 (582)
191 2j41_A Guanylate kinase; GMP, 96.5 0.0014 4.9E-08 66.6 3.8 24 32-55 7-30 (207)
192 1p9r_A General secretion pathw 96.4 0.0018 6E-08 72.8 4.3 28 31-58 167-194 (418)
193 4e22_A Cytidylate kinase; P-lo 96.4 0.0019 6.4E-08 67.9 4.2 28 32-59 28-55 (252)
194 3e70_C DPA, signal recognition 96.4 0.0016 5.5E-08 70.7 3.8 26 32-57 130-155 (328)
195 1knq_A Gluconate kinase; ALFA/ 96.4 0.002 6.9E-08 63.4 4.3 25 33-57 10-34 (175)
196 2cvh_A DNA repair and recombin 96.4 0.0054 1.9E-07 62.9 7.5 81 1058-1150 83-185 (220)
197 3uie_A Adenylyl-sulfate kinase 96.4 0.0017 5.8E-08 65.5 3.5 26 31-56 25-50 (200)
198 2ewv_A Twitching motility prot 96.3 0.0015 5.2E-08 72.7 3.3 26 31-56 136-161 (372)
199 3tqc_A Pantothenate kinase; bi 96.3 0.0019 6.5E-08 69.5 3.7 24 33-56 94-117 (321)
200 1tq4_A IIGP1, interferon-induc 96.3 0.0015 5.1E-08 73.1 3.0 24 32-55 70-93 (413)
201 2og2_A Putative signal recogni 96.3 0.0019 6.5E-08 70.8 3.8 25 32-56 158-182 (359)
202 2kjq_A DNAA-related protein; s 96.3 0.002 6.7E-08 61.2 3.3 25 31-55 36-60 (149)
203 1nlf_A Regulatory protein REPA 96.2 0.0032 1.1E-07 67.4 5.1 65 1055-1137 114-183 (279)
204 3ec2_A DNA replication protein 96.2 0.002 6.8E-08 63.8 3.1 25 32-56 39-63 (180)
205 1cr0_A DNA primase/helicase; R 96.2 0.0016 5.4E-08 70.6 2.3 38 17-55 21-59 (296)
206 2yhs_A FTSY, cell division pro 96.2 0.0024 8.1E-08 72.2 3.8 25 32-56 294-318 (503)
207 2yv5_A YJEQ protein; hydrolase 96.2 0.0024 8.3E-08 68.8 3.6 27 32-59 166-192 (302)
208 1z6g_A Guanylate kinase; struc 96.1 0.00011 3.7E-09 75.4 -6.8 79 1058-1145 121-205 (218)
209 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0024 8.1E-08 72.9 3.3 25 31-55 138-162 (460)
210 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0018 6.3E-08 70.6 2.3 26 31-56 171-196 (330)
211 2gza_A Type IV secretion syste 96.1 0.0023 7.7E-08 71.0 3.1 26 31-56 175-200 (361)
212 3sop_A Neuronal-specific septi 96.1 0.00033 1.1E-08 74.1 -3.7 59 1056-1138 95-153 (270)
213 2f1r_A Molybdopterin-guanine d 96.1 0.0016 5.4E-08 63.3 1.5 26 32-57 3-28 (171)
214 2vp4_A Deoxynucleoside kinase; 96.0 0.0021 7.1E-08 66.5 2.1 23 32-54 21-43 (230)
215 3b9q_A Chloroplast SRP recepto 96.0 0.0019 6.4E-08 69.4 1.7 58 1054-1136 199-258 (302)
216 3b60_A Lipid A export ATP-bind 96.0 0.0023 8E-08 76.2 2.7 49 12-60 341-398 (582)
217 2x8a_A Nuclear valosin-contain 96.0 0.0036 1.2E-07 66.4 3.8 25 34-58 47-71 (274)
218 2rcn_A Probable GTPase ENGC; Y 96.0 0.0034 1.1E-07 68.5 3.6 24 32-55 216-239 (358)
219 1lw7_A Transcriptional regulat 96.0 0.003 1E-07 70.5 3.2 29 31-59 170-198 (365)
220 3vkg_A Dynein heavy chain, cyt 95.9 1.9 6.4E-05 60.1 30.4 27 32-58 1647-1673(3245)
221 1rz3_A Hypothetical protein rb 95.9 0.0041 1.4E-07 62.7 3.9 24 32-55 23-46 (201)
222 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0037 1.3E-07 64.9 3.7 40 16-55 7-47 (235)
223 1jjv_A Dephospho-COA kinase; P 95.9 0.0033 1.1E-07 63.8 3.1 24 33-57 4-27 (206)
224 2fxo_A Myosin heavy chain, car 95.9 0.93 3.2E-05 41.0 19.1 69 279-347 50-118 (129)
225 3ibp_A Chromosome partition pr 95.9 1.2 4E-05 45.2 21.0 49 509-560 113-162 (302)
226 3qf4_B Uncharacterized ABC tra 95.9 0.003 1E-07 75.4 3.2 48 12-59 354-409 (598)
227 2if2_A Dephospho-COA kinase; a 95.9 0.0037 1.3E-07 63.3 3.4 25 33-58 3-27 (204)
228 2yl4_A ATP-binding cassette SU 95.9 0.0027 9.1E-08 76.0 2.7 47 13-59 342-398 (595)
229 2qm8_A GTPase/ATPase; G protei 95.9 0.004 1.4E-07 68.3 3.8 24 32-55 56-79 (337)
230 4a82_A Cystic fibrosis transme 95.9 0.0019 6.4E-08 76.9 1.3 48 12-59 339-395 (578)
231 2qor_A Guanylate kinase; phosp 95.9 0.0048 1.7E-07 62.4 4.2 25 32-56 13-37 (204)
232 2og2_A Putative signal recogni 95.9 0.003 1E-07 69.2 2.6 58 1054-1136 256-315 (359)
233 2obl_A ESCN; ATPase, hydrolase 95.8 0.0033 1.1E-07 68.8 2.8 26 32-57 72-97 (347)
234 1svm_A Large T antigen; AAA+ f 95.7 0.0056 1.9E-07 67.6 4.2 29 30-58 168-196 (377)
235 2qag_C Septin-7; cell cycle, c 95.7 0.0041 1.4E-07 69.8 3.2 40 13-53 12-53 (418)
236 2dpy_A FLII, flagellum-specifi 95.7 0.0046 1.6E-07 70.1 3.5 28 32-59 158-185 (438)
237 1cke_A CK, MSSA, protein (cyti 95.7 0.0054 1.8E-07 63.3 3.7 26 33-58 7-32 (227)
238 2pez_A Bifunctional 3'-phospho 95.7 0.0062 2.1E-07 60.1 4.0 23 33-55 7-29 (179)
239 1nij_A Hypothetical protein YJ 95.6 0.0038 1.3E-07 68.0 2.3 22 32-53 5-26 (318)
240 3qf4_A ABC transporter, ATP-bi 95.6 0.0035 1.2E-07 74.5 2.2 48 12-59 341-397 (587)
241 3szr_A Interferon-induced GTP- 95.6 0.0037 1.3E-07 74.5 2.3 25 31-55 45-69 (608)
242 1oix_A RAS-related protein RAB 95.6 0.005 1.7E-07 61.5 2.9 22 33-54 31-52 (191)
243 1tf7_A KAIC; homohexamer, hexa 95.6 0.0031 1E-07 74.2 1.4 54 1082-1147 139-207 (525)
244 3vaa_A Shikimate kinase, SK; s 95.6 0.0078 2.7E-07 60.5 4.2 27 32-58 26-52 (199)
245 1wb9_A DNA mismatch repair pro 95.6 0.0058 2E-07 74.6 3.8 24 31-54 607-630 (800)
246 1nlf_A Regulatory protein REPA 95.5 0.0066 2.3E-07 64.9 3.5 25 31-55 30-54 (279)
247 1u0l_A Probable GTPase ENGC; p 95.5 0.006 2E-07 65.8 3.1 24 32-55 170-193 (301)
248 3t61_A Gluconokinase; PSI-biol 95.5 0.0073 2.5E-07 60.9 3.6 27 32-58 19-45 (202)
249 2f9l_A RAB11B, member RAS onco 95.5 0.0063 2.2E-07 61.3 3.1 22 33-54 7-28 (199)
250 1ewq_A DNA mismatch repair pro 95.4 0.007 2.4E-07 73.4 3.8 25 31-55 576-600 (765)
251 2qnr_A Septin-2, protein NEDD5 95.3 0.0058 2E-07 65.8 2.5 34 19-52 6-39 (301)
252 1n0w_A DNA repair protein RAD5 95.3 0.0084 2.9E-07 62.6 3.6 24 31-54 24-47 (243)
253 1in4_A RUVB, holliday junction 95.3 0.0095 3.2E-07 65.5 4.1 26 32-57 52-77 (334)
254 3thx_B DNA mismatch repair pro 95.3 0.0064 2.2E-07 75.0 2.8 22 32-53 674-695 (918)
255 2cvh_A DNA repair and recombin 95.3 0.01 3.5E-07 60.8 3.9 23 31-53 20-42 (220)
256 1t9h_A YLOQ, probable GTPase E 95.2 0.0035 1.2E-07 67.0 0.4 22 32-53 174-195 (307)
257 2oap_1 GSPE-2, type II secreti 95.2 0.0071 2.4E-07 70.0 2.9 25 32-56 261-285 (511)
258 1q3t_A Cytidylate kinase; nucl 95.2 0.011 3.8E-07 61.3 4.1 26 33-58 18-43 (236)
259 2px0_A Flagellar biosynthesis 95.2 0.01 3.6E-07 63.5 3.9 25 32-56 106-130 (296)
260 1ixz_A ATP-dependent metallopr 95.1 0.01 3.5E-07 62.4 3.6 23 34-56 52-74 (254)
261 3thx_A DNA mismatch repair pro 95.1 0.0099 3.4E-07 73.6 3.9 21 32-52 663-683 (934)
262 3u1c_A Tropomyosin alpha-1 cha 95.1 1.3 4.4E-05 37.9 15.9 9 414-422 27-35 (101)
263 1vma_A Cell division protein F 95.1 0.011 3.9E-07 63.3 3.8 25 32-56 105-129 (306)
264 2qt1_A Nicotinamide riboside k 95.1 0.0099 3.4E-07 60.2 3.2 23 33-55 23-45 (207)
265 2eyu_A Twitching motility prot 95.1 0.019 6.6E-07 60.1 5.5 56 1067-1145 88-143 (261)
266 2fxo_A Myosin heavy chain, car 95.1 1.9 6.5E-05 39.0 18.7 99 254-352 18-116 (129)
267 3nwj_A ATSK2; P loop, shikimat 95.0 0.013 4.5E-07 60.8 3.8 28 31-58 48-75 (250)
268 2o8b_B DNA mismatch repair pro 95.0 0.011 3.7E-07 74.3 3.7 22 32-53 790-811 (1022)
269 2i3b_A HCR-ntpase, human cance 95.0 0.0028 9.7E-08 62.8 -1.2 52 1057-1109 81-135 (189)
270 1np6_A Molybdopterin-guanine d 94.9 0.015 5.1E-07 56.5 3.8 24 32-55 7-30 (174)
271 1iy2_A ATP-dependent metallopr 94.9 0.013 4.3E-07 62.6 3.6 23 34-56 76-98 (278)
272 1pui_A ENGB, probable GTP-bind 94.9 0.018 6.1E-07 58.4 4.5 20 33-52 28-47 (210)
273 1via_A Shikimate kinase; struc 94.8 0.015 5.1E-07 57.0 3.6 26 33-58 6-31 (175)
274 1pzn_A RAD51, DNA repair and r 94.8 0.012 4.1E-07 64.8 3.1 24 32-55 132-155 (349)
275 1pui_A ENGB, probable GTP-bind 94.8 0.008 2.7E-07 61.1 1.5 53 1056-1112 146-199 (210)
276 2ze6_A Isopentenyl transferase 94.8 0.016 5.4E-07 60.6 3.8 25 33-57 3-27 (253)
277 2www_A Methylmalonic aciduria 94.7 0.014 4.8E-07 64.3 3.4 25 31-55 74-98 (349)
278 1ega_A Protein (GTP-binding pr 94.7 0.011 3.6E-07 63.8 2.4 23 31-53 8-30 (301)
279 3kb2_A SPBC2 prophage-derived 94.7 0.017 6E-07 56.3 3.6 26 33-58 3-28 (173)
280 3r20_A Cytidylate kinase; stru 94.7 0.018 6.2E-07 58.7 3.7 26 33-58 11-36 (233)
281 4a74_A DNA repair and recombin 94.6 0.051 1.7E-06 55.9 7.2 60 1079-1149 123-199 (231)
282 1odf_A YGR205W, hypothetical 3 94.6 0.019 6.5E-07 61.2 3.9 25 33-57 33-57 (290)
283 3cm0_A Adenylate kinase; ATP-b 94.6 0.02 6.8E-07 56.8 3.8 25 33-57 6-30 (186)
284 1ex7_A Guanylate kinase; subst 94.5 0.019 6.6E-07 56.3 3.4 23 33-55 3-25 (186)
285 2wji_A Ferrous iron transport 94.4 0.018 6.2E-07 55.7 3.1 20 33-52 5-24 (165)
286 2dfs_A Myosin-5A; myosin-V, in 94.4 9 0.00031 48.3 27.9 13 10-22 433-445 (1080)
287 3lw7_A Adenylate kinase relate 94.3 0.024 8.3E-07 55.5 3.8 26 32-58 2-27 (179)
288 2rhm_A Putative kinase; P-loop 94.3 0.027 9.1E-07 56.2 4.0 26 32-57 6-31 (193)
289 2v9p_A Replication protein E1; 94.3 0.00082 2.8E-08 71.7 -7.6 57 1057-1153 198-254 (305)
290 2dr3_A UPF0273 protein PH0284; 94.3 0.022 7.6E-07 59.4 3.5 25 31-55 23-47 (247)
291 1vht_A Dephospho-COA kinase; s 94.2 0.025 8.4E-07 57.8 3.7 24 33-57 6-29 (218)
292 2yvu_A Probable adenylyl-sulfa 94.2 0.024 8.1E-07 56.2 3.5 26 32-57 14-39 (186)
293 1xjc_A MOBB protein homolog; s 94.2 0.028 9.7E-07 53.9 3.8 25 32-56 5-29 (169)
294 4eaq_A DTMP kinase, thymidylat 94.2 0.032 1.1E-06 57.3 4.3 25 33-57 28-52 (229)
295 1zu4_A FTSY; GTPase, signal re 94.1 0.026 8.9E-07 61.0 3.7 25 32-56 106-130 (320)
296 3cr8_A Sulfate adenylyltranfer 94.1 0.016 5.4E-07 67.5 2.0 26 33-58 371-396 (552)
297 3ec2_A DNA replication protein 94.0 0.021 7.2E-07 56.2 2.6 43 1081-1135 100-143 (180)
298 3lda_A DNA repair protein RAD5 94.0 0.026 8.8E-07 63.0 3.5 27 29-55 176-202 (400)
299 1m7g_A Adenylylsulfate kinase; 94.0 0.028 9.5E-07 57.1 3.4 25 32-56 26-50 (211)
300 2gj8_A MNME, tRNA modification 93.8 0.026 9E-07 55.0 2.8 20 33-52 6-25 (172)
301 1qhx_A CPT, protein (chloramph 93.8 0.038 1.3E-06 54.2 4.0 26 32-57 4-29 (178)
302 2dpy_A FLII, flagellum-specifi 93.8 0.01 3.5E-07 67.2 -0.2 64 1057-1145 256-326 (438)
303 1pzn_A RAD51, DNA repair and r 93.8 0.035 1.2E-06 61.0 4.0 64 1061-1136 208-287 (349)
304 3trf_A Shikimate kinase, SK; a 93.7 0.039 1.3E-06 54.5 4.0 27 32-58 6-32 (185)
305 1ni3_A YCHF GTPase, YCHF GTP-b 93.7 0.031 1.1E-06 61.9 3.5 22 32-53 21-42 (392)
306 2jaq_A Deoxyguanosine kinase; 93.7 0.037 1.3E-06 55.8 3.8 26 33-58 2-27 (205)
307 2p5t_B PEZT; postsegregational 93.7 0.027 9.4E-07 58.9 2.9 26 32-57 33-58 (253)
308 2wjg_A FEOB, ferrous iron tran 93.7 0.031 1E-06 55.4 3.1 20 33-52 9-28 (188)
309 1y63_A LMAJ004144AAA protein; 93.7 0.044 1.5E-06 54.1 4.1 26 32-57 11-37 (184)
310 1lv7_A FTSH; alpha/beta domain 93.6 0.047 1.6E-06 57.4 4.5 26 33-58 47-72 (257)
311 1ly1_A Polynucleotide kinase; 93.6 0.035 1.2E-06 54.6 3.4 24 33-56 4-28 (181)
312 1kht_A Adenylate kinase; phosp 93.5 0.036 1.2E-06 55.1 3.3 25 33-57 5-29 (192)
313 3iij_A Coilin-interacting nucl 93.5 0.043 1.5E-06 54.0 3.8 27 32-58 12-38 (180)
314 1ls1_A Signal recognition part 93.5 0.037 1.3E-06 59.2 3.5 25 32-56 99-123 (295)
315 2vli_A Antibiotic resistance p 93.5 0.034 1.2E-06 54.8 3.0 26 33-58 7-32 (183)
316 3hr8_A Protein RECA; alpha and 93.4 0.034 1.2E-06 60.7 3.1 24 32-55 62-85 (356)
317 3ake_A Cytidylate kinase; CMP 93.4 0.047 1.6E-06 55.2 4.0 26 33-58 4-29 (208)
318 3aez_A Pantothenate kinase; tr 93.4 0.0024 8.3E-08 68.9 -6.0 38 1055-1096 172-209 (312)
319 1gvn_B Zeta; postsegregational 93.3 0.039 1.3E-06 58.8 3.3 23 33-55 35-57 (287)
320 2zej_A Dardarin, leucine-rich 93.3 0.034 1.2E-06 54.9 2.6 20 33-52 4-23 (184)
321 2p67_A LAO/AO transport system 93.3 0.042 1.4E-06 60.3 3.6 24 32-55 57-80 (341)
322 3exa_A TRNA delta(2)-isopenten 93.3 0.043 1.5E-06 58.0 3.4 26 32-57 4-29 (322)
323 1sxj_E Activator 1 40 kDa subu 93.2 0.047 1.6E-06 60.6 3.9 22 34-55 39-60 (354)
324 2obl_A ESCN; ATPase, hydrolase 93.2 0.014 4.6E-07 64.0 -0.5 67 1055-1146 167-238 (347)
325 2c95_A Adenylate kinase 1; tra 93.2 0.051 1.7E-06 54.2 3.7 27 32-58 10-36 (196)
326 3foz_A TRNA delta(2)-isopenten 93.1 0.052 1.8E-06 57.3 3.8 27 31-57 10-36 (316)
327 3m6a_A ATP-dependent protease 93.1 0.047 1.6E-06 64.1 3.9 30 32-61 109-138 (543)
328 1tev_A UMP-CMP kinase; ploop, 93.1 0.053 1.8E-06 54.1 3.8 25 33-57 5-29 (196)
329 3kl4_A SRP54, signal recogniti 93.1 0.044 1.5E-06 61.4 3.3 25 32-56 98-122 (433)
330 1sxj_E Activator 1 40 kDa subu 93.1 0.064 2.2E-06 59.5 4.7 43 1080-1136 133-175 (354)
331 2z0h_A DTMP kinase, thymidylat 93.1 0.053 1.8E-06 54.2 3.7 23 33-55 2-24 (197)
332 1gtv_A TMK, thymidylate kinase 92.8 0.024 8.4E-07 57.6 0.7 25 33-57 2-26 (214)
333 1nks_A Adenylate kinase; therm 92.7 0.054 1.9E-06 53.9 3.1 25 33-57 3-27 (194)
334 1e6c_A Shikimate kinase; phosp 92.7 0.064 2.2E-06 52.2 3.6 26 33-58 4-29 (173)
335 3hnw_A Uncharacterized protein 92.6 5.8 0.0002 36.0 17.2 65 657-721 67-131 (138)
336 1zak_A Adenylate kinase; ATP:A 92.6 0.068 2.3E-06 54.6 3.8 26 32-57 6-31 (222)
337 2iyv_A Shikimate kinase, SK; t 92.5 0.071 2.4E-06 52.6 3.7 27 32-58 3-29 (184)
338 2xb4_A Adenylate kinase; ATP-b 92.4 0.075 2.6E-06 54.3 3.8 25 33-57 2-26 (223)
339 3crm_A TRNA delta(2)-isopenten 92.4 0.076 2.6E-06 56.8 3.9 26 32-57 6-31 (323)
340 2cdn_A Adenylate kinase; phosp 92.4 0.09 3.1E-06 52.7 4.3 29 30-58 18-47 (201)
341 1uf9_A TT1252 protein; P-loop, 92.4 0.063 2.1E-06 53.9 3.1 22 33-54 10-31 (203)
342 3d3q_A TRNA delta(2)-isopenten 92.4 0.073 2.5E-06 57.3 3.7 25 33-57 9-33 (340)
343 1udx_A The GTP-binding protein 92.3 0.044 1.5E-06 61.4 2.0 21 32-52 158-178 (416)
344 3iev_A GTP-binding protein ERA 92.2 0.052 1.8E-06 58.6 2.4 24 29-52 8-31 (308)
345 2bwj_A Adenylate kinase 5; pho 92.2 0.083 2.8E-06 52.8 3.7 27 32-58 13-39 (199)
346 2w58_A DNAI, primosome compone 92.1 0.089 3E-06 52.8 3.9 26 32-57 55-80 (202)
347 3jvv_A Twitching mobility prot 92.1 0.1 3.4E-06 57.3 4.5 55 1069-1146 188-242 (356)
348 1qf9_A UMP/CMP kinase, protein 92.1 0.08 2.7E-06 52.6 3.5 26 32-57 7-32 (194)
349 2pt5_A Shikimate kinase, SK; a 92.1 0.091 3.1E-06 50.8 3.8 26 33-58 2-27 (168)
350 3bos_A Putative DNA replicatio 92.1 0.084 2.9E-06 54.7 3.7 28 31-58 52-79 (242)
351 2qtf_A Protein HFLX, GTP-bindi 92.1 0.066 2.3E-06 59.1 3.0 20 33-52 181-200 (364)
352 1j8m_F SRP54, signal recogniti 92.0 0.067 2.3E-06 57.1 3.0 25 32-56 99-123 (297)
353 1zd8_A GTP:AMP phosphotransfer 92.0 0.08 2.7E-06 54.3 3.5 27 32-58 8-34 (227)
354 1ukz_A Uridylate kinase; trans 92.0 0.086 2.9E-06 52.9 3.7 25 33-57 17-41 (203)
355 2jeo_A Uridine-cytidine kinase 92.0 0.031 1E-06 58.3 0.2 54 1055-1135 112-165 (245)
356 2plr_A DTMP kinase, probable t 92.0 0.089 3E-06 53.2 3.7 26 33-58 6-31 (213)
357 2ffh_A Protein (FFH); SRP54, s 92.0 0.078 2.7E-06 59.3 3.5 26 32-57 99-124 (425)
358 1sxj_C Activator 1 40 kDa subu 91.9 0.088 3E-06 57.9 3.9 24 34-57 49-72 (340)
359 3cf0_A Transitional endoplasmi 91.9 0.1 3.4E-06 56.3 4.2 27 32-58 50-76 (301)
360 3llm_A ATP-dependent RNA helic 91.9 0.092 3.1E-06 54.2 3.8 22 32-53 77-98 (235)
361 3lxx_A GTPase IMAP family memb 91.9 0.076 2.6E-06 55.0 3.1 20 33-52 31-50 (239)
362 2ga8_A Hypothetical 39.9 kDa p 91.9 0.075 2.6E-06 57.3 3.1 25 33-57 26-50 (359)
363 2grj_A Dephospho-COA kinase; T 91.7 0.1 3.5E-06 51.6 3.7 26 33-58 14-39 (192)
364 1tue_A Replication protein E1; 91.7 0.098 3.4E-06 51.4 3.4 31 29-59 56-86 (212)
365 3k53_A Ferrous iron transport 91.5 0.08 2.7E-06 56.0 2.8 20 33-52 5-24 (271)
366 2f6r_A COA synthase, bifunctio 91.5 0.11 3.8E-06 55.2 3.9 24 33-57 77-100 (281)
367 1aky_A Adenylate kinase; ATP:A 91.4 0.11 3.8E-06 52.9 3.8 26 33-58 6-31 (220)
368 3t34_A Dynamin-related protein 91.4 0.098 3.4E-06 58.0 3.6 24 30-53 33-56 (360)
369 2pbr_A DTMP kinase, thymidylat 91.4 0.11 3.9E-06 51.6 3.7 23 33-55 2-24 (195)
370 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.11 3.8E-06 54.5 3.8 24 32-55 5-28 (260)
371 2ged_A SR-beta, signal recogni 91.3 0.099 3.4E-06 51.9 3.1 22 33-54 50-71 (193)
372 2v54_A DTMP kinase, thymidylat 91.2 0.12 4.1E-06 51.8 3.8 23 33-55 6-28 (204)
373 3fb4_A Adenylate kinase; psych 91.2 0.12 4E-06 52.5 3.7 25 34-58 3-27 (216)
374 2zr9_A Protein RECA, recombina 91.2 0.11 3.6E-06 57.0 3.5 25 31-55 61-85 (349)
375 1mky_A Probable GTP-binding pr 91.2 0.091 3.1E-06 60.0 3.1 20 33-52 182-201 (439)
376 2dhr_A FTSH; AAA+ protein, hex 91.1 0.1 3.6E-06 59.8 3.5 23 34-56 67-89 (499)
377 4ag6_A VIRB4 ATPase, type IV s 91.1 0.11 3.9E-06 58.3 3.7 24 32-55 36-59 (392)
378 2qnr_A Septin-2, protein NEDD5 91.1 0.013 4.3E-07 63.2 -4.0 58 1055-1135 109-167 (301)
379 2r6a_A DNAB helicase, replicat 91.1 0.078 2.7E-06 60.9 2.3 38 17-55 189-227 (454)
380 3eph_A TRNA isopentenyltransfe 91.0 0.11 3.8E-06 57.0 3.4 26 32-57 3-28 (409)
381 3dm5_A SRP54, signal recogniti 91.0 0.11 3.9E-06 58.1 3.5 25 32-56 101-125 (443)
382 3oja_B Anopheles plasmodium-re 90.9 4.1 0.00014 48.4 17.5 10 349-358 479-488 (597)
383 2wwf_A Thymidilate kinase, put 90.9 0.11 3.9E-06 52.4 3.2 26 32-57 11-36 (212)
384 2qag_A Septin-2, protein NEDD5 90.8 0.092 3.2E-06 58.0 2.6 18 34-51 40-57 (361)
385 2qmh_A HPR kinase/phosphorylas 90.8 0.12 4.1E-06 50.5 3.0 26 31-56 34-59 (205)
386 3b9p_A CG5977-PA, isoform A; A 90.8 0.16 5.3E-06 54.7 4.4 27 32-58 55-81 (297)
387 1zuh_A Shikimate kinase; alpha 90.8 0.16 5.4E-06 49.1 4.0 27 33-59 9-35 (168)
388 3oja_B Anopheles plasmodium-re 90.8 2.1 7.2E-05 51.0 14.7 37 324-360 542-578 (597)
389 2ohf_A Protein OLA1, GTP-bindi 90.7 0.11 3.8E-06 57.3 3.1 20 33-52 24-43 (396)
390 3dl0_A Adenylate kinase; phosp 90.7 0.14 4.9E-06 51.9 3.7 25 34-58 3-27 (216)
391 1uj2_A Uridine-cytidine kinase 90.6 0.14 4.9E-06 53.4 3.7 26 33-58 24-49 (252)
392 1nn5_A Similar to deoxythymidy 90.6 0.13 4.4E-06 52.1 3.3 25 33-57 11-35 (215)
393 2kjq_A DNAA-related protein; s 90.6 0.11 3.7E-06 49.1 2.4 41 1081-1134 83-124 (149)
394 3a8t_A Adenylate isopentenyltr 90.5 0.11 3.7E-06 55.8 2.7 26 32-57 41-66 (339)
395 1z2a_A RAS-related protein RAB 90.4 0.13 4.6E-06 49.4 3.1 20 34-53 8-27 (168)
396 2dyk_A GTP-binding protein; GT 90.4 0.14 4.7E-06 48.9 3.1 20 34-53 4-23 (161)
397 1m2o_B GTP-binding protein SAR 90.4 0.12 4.2E-06 51.1 2.8 21 33-53 25-45 (190)
398 1jbk_A CLPB protein; beta barr 90.4 0.17 5.9E-06 50.0 3.9 26 32-57 44-69 (195)
399 1fzq_A ADP-ribosylation factor 90.3 0.12 4.1E-06 50.7 2.7 20 33-52 18-37 (181)
400 1wf3_A GTP-binding protein; GT 90.3 0.13 4.3E-06 55.2 3.0 21 32-52 8-28 (301)
401 1njg_A DNA polymerase III subu 90.3 0.17 5.7E-06 52.4 3.9 26 32-57 46-71 (250)
402 3b1v_A Ferrous iron uptake tra 90.2 0.14 4.6E-06 54.0 3.1 20 33-52 5-24 (272)
403 2e87_A Hypothetical protein PH 90.2 0.15 5E-06 56.5 3.5 21 32-52 168-188 (357)
404 1fnn_A CDC6P, cell division co 90.2 0.19 6.4E-06 56.5 4.5 25 33-57 46-70 (389)
405 3lv8_A DTMP kinase, thymidylat 90.1 0.16 5.3E-06 52.0 3.3 25 33-57 29-53 (236)
406 1e4v_A Adenylate kinase; trans 90.1 0.16 5.5E-06 51.4 3.5 24 34-57 3-26 (214)
407 1ky3_A GTP-binding protein YPT 90.0 0.15 5.3E-06 49.8 3.1 22 33-54 10-31 (182)
408 1kao_A RAP2A; GTP-binding prot 89.9 0.16 5.4E-06 48.8 3.1 20 34-53 6-25 (167)
409 1ek0_A Protein (GTP-binding pr 89.9 0.16 5.3E-06 49.0 3.1 20 34-53 6-25 (170)
410 2h92_A Cytidylate kinase; ross 89.9 0.18 6E-06 51.3 3.6 26 33-58 5-30 (219)
411 3k1j_A LON protease, ATP-depen 89.9 0.15 5.3E-06 60.7 3.6 27 32-58 61-87 (604)
412 1z0j_A RAB-22, RAS-related pro 89.9 0.16 5.5E-06 49.0 3.1 20 34-53 9-28 (170)
413 1z08_A RAS-related protein RAB 89.8 0.16 5.6E-06 48.9 3.2 21 34-54 9-29 (170)
414 2wsm_A Hydrogenase expression/ 89.8 0.18 6E-06 51.4 3.5 26 32-57 31-56 (221)
415 3asz_A Uridine kinase; cytidin 89.7 0.0022 7.4E-08 65.5 -11.1 64 1056-1134 86-160 (211)
416 1moz_A ARL1, ADP-ribosylation 89.7 0.11 3.6E-06 51.1 1.7 20 33-52 20-39 (183)
417 1g16_A RAS-related protein SEC 89.7 0.15 5.3E-06 49.1 2.8 20 34-53 6-25 (170)
418 3be4_A Adenylate kinase; malar 89.7 0.18 6.3E-06 51.1 3.5 26 33-58 7-32 (217)
419 1l8q_A Chromosomal replication 89.7 0.19 6.5E-06 54.8 3.9 24 32-55 38-61 (324)
420 2qby_A CDC6 homolog 1, cell di 89.6 0.17 5.7E-06 56.8 3.5 25 31-55 45-69 (386)
421 1a7j_A Phosphoribulokinase; tr 89.6 0.11 3.6E-06 55.4 1.7 24 33-56 7-30 (290)
422 2nzj_A GTP-binding protein REM 89.6 0.17 5.9E-06 49.0 3.1 19 34-52 7-25 (175)
423 2erx_A GTP-binding protein DI- 89.6 0.17 5.9E-06 48.8 3.1 19 34-52 6-24 (172)
424 1wms_A RAB-9, RAB9, RAS-relate 89.6 0.17 5.9E-06 49.2 3.1 20 34-53 10-29 (177)
425 1u8z_A RAS-related protein RAL 89.6 0.17 5.8E-06 48.6 3.1 20 34-53 7-26 (168)
426 3t15_A Ribulose bisphosphate c 89.6 0.23 7.9E-06 53.0 4.3 28 33-60 38-65 (293)
427 1f6b_A SAR1; gtpases, N-termin 89.5 0.13 4.4E-06 51.4 2.2 20 33-52 27-46 (198)
428 2v3c_C SRP54, signal recogniti 89.5 0.16 5.6E-06 57.2 3.2 24 32-55 100-123 (432)
429 1c1y_A RAS-related protein RAP 89.5 0.17 5.9E-06 48.5 3.1 20 34-53 6-25 (167)
430 2ce2_X GTPase HRAS; signaling 89.5 0.16 5.5E-06 48.6 2.8 20 34-53 6-25 (166)
431 3q85_A GTP-binding protein REM 89.5 0.17 6E-06 48.7 3.1 19 34-52 5-23 (169)
432 2p65_A Hypothetical protein PF 89.4 0.19 6.4E-06 49.4 3.3 27 31-57 43-69 (187)
433 1upt_A ARL1, ADP-ribosylation 89.3 0.18 6.3E-06 48.6 3.1 21 33-53 9-29 (171)
434 3h4m_A Proteasome-activating n 89.3 0.24 8.1E-06 52.8 4.2 28 32-59 52-79 (285)
435 1yrb_A ATP(GTP)binding protein 89.3 0.23 8E-06 52.1 4.1 27 30-56 13-39 (262)
436 2lkc_A Translation initiation 89.3 0.24 8.1E-06 48.2 3.9 22 32-53 9-30 (178)
437 4fcw_A Chaperone protein CLPB; 89.2 0.21 7.2E-06 54.0 3.8 26 33-58 49-74 (311)
438 2dby_A GTP-binding protein; GD 89.1 0.18 6.1E-06 55.5 3.1 21 34-54 4-24 (368)
439 1r2q_A RAS-related protein RAB 89.1 0.2 6.7E-06 48.3 3.1 20 34-53 9-28 (170)
440 4edh_A DTMP kinase, thymidylat 89.1 0.22 7.4E-06 50.2 3.4 25 33-57 8-32 (213)
441 2oil_A CATX-8, RAS-related pro 89.1 0.19 6.6E-06 49.7 3.1 20 34-53 28-47 (193)
442 1ak2_A Adenylate kinase isoenz 89.0 0.23 7.9E-06 51.0 3.7 26 33-58 18-43 (233)
443 1ltq_A Polynucleotide kinase; 89.0 0.2 6.7E-06 54.0 3.3 22 33-54 4-25 (301)
444 3pqc_A Probable GTP-binding pr 89.0 0.31 1.1E-05 48.2 4.6 20 33-52 25-44 (195)
445 3tw8_B RAS-related protein RAB 89.0 0.19 6.7E-06 48.9 3.0 19 34-52 12-30 (181)
446 2y8e_A RAB-protein 6, GH09086P 88.9 0.19 6.4E-06 49.0 2.8 20 34-53 17-36 (179)
447 1svi_A GTP-binding protein YSX 88.9 0.28 9.5E-06 48.6 4.2 20 33-52 25-44 (195)
448 2qz4_A Paraplegin; AAA+, SPG7, 88.8 0.29 1E-05 51.3 4.5 28 32-59 40-67 (262)
449 1v5w_A DMC1, meiotic recombina 88.8 0.25 8.7E-06 54.1 4.1 23 32-54 123-145 (343)
450 3n70_A Transport activator; si 88.8 0.22 7.5E-06 46.7 3.1 23 33-55 26-48 (145)
451 2cxx_A Probable GTP-binding pr 88.8 0.18 6.2E-06 49.7 2.6 19 34-52 4-22 (190)
452 1r8s_A ADP-ribosylation factor 88.8 0.21 7.3E-06 47.7 3.1 21 34-54 3-23 (164)
453 2b9c_A Striated-muscle alpha t 88.8 14 0.00049 33.9 15.9 141 296-464 1-141 (147)
454 3ihw_A Centg3; RAS, centaurin, 88.7 0.22 7.6E-06 48.9 3.2 22 33-54 22-43 (184)
455 2fn4_A P23, RAS-related protei 88.7 0.2 6.9E-06 48.8 2.9 22 33-54 11-32 (181)
456 3p32_A Probable GTPase RV1496/ 88.7 0.24 8.2E-06 54.6 3.8 25 32-56 80-104 (355)
457 2ce7_A Cell division protein F 88.6 0.24 8.3E-06 56.4 3.8 26 33-58 51-76 (476)
458 2z4s_A Chromosomal replication 88.6 0.23 7.8E-06 56.6 3.6 25 32-56 131-155 (440)
459 3q72_A GTP-binding protein RAD 88.5 0.2 6.8E-06 48.1 2.7 19 34-52 5-23 (166)
460 4dsu_A GTPase KRAS, isoform 2B 88.5 0.22 7.7E-06 48.9 3.1 20 34-53 7-26 (189)
461 3bc1_A RAS-related protein RAB 88.5 0.22 7.5E-06 49.2 3.1 21 33-53 13-33 (195)
462 1n0w_A DNA repair protein RAD5 88.5 0.38 1.3E-05 49.7 5.0 44 1080-1134 118-173 (243)
463 2hxs_A RAB-26, RAS-related pro 88.5 0.23 7.8E-06 48.3 3.1 20 34-53 9-28 (178)
464 1nrj_B SR-beta, signal recogni 88.5 0.22 7.5E-06 50.5 3.1 24 32-55 13-36 (218)
465 3tlx_A Adenylate kinase 2; str 88.4 0.27 9.2E-06 50.8 3.8 25 33-57 31-55 (243)
466 1ypw_A Transitional endoplasmi 88.4 0.23 7.7E-06 61.3 3.7 27 32-58 239-265 (806)
467 3ld9_A DTMP kinase, thymidylat 88.4 0.26 8.8E-06 49.8 3.4 25 33-57 23-47 (223)
468 4tmk_A Protein (thymidylate ki 88.3 0.27 9.1E-06 49.5 3.5 25 33-57 5-29 (213)
469 3umf_A Adenylate kinase; rossm 88.3 0.31 1.1E-05 49.0 4.0 27 32-58 30-56 (217)
470 1m7b_A RND3/RHOE small GTP-bin 88.2 0.22 7.6E-06 48.9 2.8 21 33-53 9-29 (184)
471 3con_A GTPase NRAS; structural 88.2 0.24 8.1E-06 48.9 3.1 21 34-54 24-44 (190)
472 1z0f_A RAB14, member RAS oncog 88.2 0.24 8.2E-06 48.2 3.1 22 33-54 17-38 (179)
473 2ius_A DNA translocase FTSK; n 88.1 0.25 8.5E-06 56.6 3.5 24 32-55 168-191 (512)
474 3v9p_A DTMP kinase, thymidylat 88.1 0.21 7.2E-06 50.7 2.6 25 33-57 27-51 (227)
475 2bme_A RAB4A, RAS-related prot 88.1 0.23 7.8E-06 48.8 2.8 20 34-53 13-32 (186)
476 3kkq_A RAS-related protein M-R 88.1 0.25 8.4E-06 48.4 3.1 21 33-53 20-40 (183)
477 1odf_A YGR205W, hypothetical 3 88.0 0.017 5.9E-07 61.5 -5.8 38 1056-1097 131-168 (290)
478 3zvl_A Bifunctional polynucleo 88.0 0.25 8.6E-06 55.7 3.4 26 32-57 259-284 (416)
479 2efe_B Small GTP-binding prote 88.0 0.26 8.8E-06 48.1 3.2 20 34-53 15-34 (181)
480 2g6b_A RAS-related protein RAB 88.0 0.25 8.6E-06 48.1 3.1 22 33-54 12-33 (180)
481 2a9k_A RAS-related protein RAL 88.0 0.25 8.5E-06 48.5 3.1 20 34-53 21-40 (187)
482 2jee_A YIIU; FTSZ, septum, coi 88.0 6.8 0.00023 31.4 10.4 74 653-726 8-81 (81)
483 3lxw_A GTPase IMAP family memb 87.9 0.25 8.5E-06 51.3 3.1 21 33-53 23-43 (247)
484 2dy1_A Elongation factor G; tr 87.9 0.25 8.5E-06 59.4 3.5 26 32-57 10-35 (665)
485 2dfs_A Myosin-5A; myosin-V, in 87.8 67 0.0023 40.5 37.1 11 127-137 729-739 (1080)
486 3clv_A RAB5 protein, putative; 87.8 0.26 8.8E-06 49.2 3.1 22 33-54 9-30 (208)
487 2fg5_A RAB-22B, RAS-related pr 87.8 0.25 8.4E-06 48.9 2.9 20 34-53 26-45 (192)
488 2bov_A RAla, RAS-related prote 87.8 0.26 8.8E-06 49.4 3.1 21 33-53 16-36 (206)
489 2gf9_A RAS-related protein RAB 87.8 0.26 9E-06 48.6 3.1 20 34-53 25-44 (189)
490 1sxj_D Activator 1 41 kDa subu 87.7 0.29 1E-05 54.0 3.7 28 28-56 56-83 (353)
491 1jal_A YCHF protein; nucleotid 87.6 0.26 8.9E-06 53.7 3.1 19 34-52 5-23 (363)
492 2ew1_A RAS-related protein RAB 87.6 0.25 8.7E-06 49.3 2.8 19 34-52 29-47 (201)
493 2vhj_A Ntpase P4, P4; non- hyd 87.6 0.24 8.1E-06 52.6 2.6 30 29-58 121-150 (331)
494 1mh1_A RAC1; GTP-binding, GTPa 87.6 0.28 9.4E-06 48.1 3.1 19 34-52 8-26 (186)
495 1vg8_A RAS-related protein RAB 87.5 0.28 9.5E-06 49.2 3.1 19 34-52 11-29 (207)
496 2r62_A Cell division protease 87.4 0.28 9.6E-06 51.7 3.2 41 29-69 42-82 (268)
497 3e1s_A Exodeoxyribonuclease V, 87.4 0.32 1.1E-05 57.2 4.0 25 31-55 204-228 (574)
498 3t5g_A GTP-binding protein RHE 87.4 0.27 9.2E-06 48.0 2.8 19 34-52 9-27 (181)
499 1jwy_B Dynamin A GTPase domain 87.3 0.28 9.5E-06 53.2 3.1 21 32-52 25-45 (315)
500 3bh0_A DNAB-like replicative h 87.3 0.21 7.2E-06 54.0 2.1 37 16-53 53-90 (315)
No 1
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-38 Score=362.66 Aligned_cols=170 Identities=49% Similarity=0.833 Sum_probs=126.4
Q ss_pred CCceeEEEEecceeccCceeecCC-CCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhh------
Q 036401 7 PGKIHRLELENFKSYKGLQIIGPF-SDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEK------ 79 (1154)
Q Consensus 7 ~~~i~~l~l~nFks~~~~~~i~~~-~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~------ 79 (1154)
||+|++|.+.||++|.+.+.+.|. +++|+|+||||||||||++||+|++++.+..+|+..+.|+|+.|.....
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~~R~~~~~~lI~~g~~~~~~~~~~~ 80 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYD 80 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---------CGGGSCCC-----------
T ss_pred CCeeEEEEEeCEEEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccccchhhhHHHHHhcCCccceeeEEec
Confidence 589999999999999886656554 4699999999999999999999999987766899999999999862110
Q ss_pred -----hcccceEEEEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhc
Q 036401 80 -----EQKGRRAFVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIAS 154 (1154)
Q Consensus 80 -----~~~~~~a~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~ 154 (1154)
...+..++|...|... +..+.|.|.+.++|.+.|+|||++++.+++..++...||.+.+.+|+++||++..|+.
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~-~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~~~~l~~ 159 (430)
T 1w1w_A 81 NEGAASSNPQSAYVKAFYQKG-NKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAA 159 (430)
T ss_dssp --------CCEEEEEEEEEET-TEEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEECTTCTTHHHH
T ss_pred ccccccCCcccccceeeeccC-CcEEEEEEEEecCCceEEEECCEEccHHHHHHHHHhCCcCCCCcceeeehHhHHHHHh
Confidence 0012578999999764 5689999999988889999999999999999999888988877888999999999999
Q ss_pred CCchHHHHHHHHhhcchhhhHHH
Q 036401 155 KNPKELTALLEQISGSDELKREY 177 (1154)
Q Consensus 155 ~~p~~~~~~~e~~~g~~~~~~~~ 177 (1154)
++|.+|+.+|++++|+..|...|
T Consensus 160 ~~p~eRr~~ld~~~g~~~~~~~~ 182 (430)
T 1w1w_A 160 QSPVELSRMFEEVSGSIQYKKEY 182 (430)
T ss_dssp SCHHHHHHTC-------------
T ss_pred CCHHHHHHHHHHHhCchhHHHHH
Confidence 99999999999999987776443
No 2
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.97 E-value=8e-28 Score=284.29 Aligned_cols=140 Identities=24% Similarity=0.358 Sum_probs=110.4
Q ss_pred CCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceE
Q 036401 7 PGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 7 ~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
.|+|.+|.|.||++|.+.+ +.|.+|||+|+|||||||||||+||+|++|+++ ..++|+.|+. .|
T Consensus 37 ~M~l~~L~i~nf~~~~~~~-l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~-------~~~~i~~g~~--------~a 100 (517)
T 4ad8_A 37 GPRLSRLEIRNLATITQLE-LELGGGFCAFTGETGAGKSIIVDALGLLLGGRA-------NHDLIRSGEK--------EL 100 (517)
T ss_dssp -CCCCEEEEESBTTBSCEE-EECCCSEEEEEESHHHHHHHHTHHHHHHTCSCC-------CGGGBCTTCS--------EE
T ss_pred cceeeeeecccccceeeEE-EecCCCeEEEEcCCCCCHHHHHHHHHHHhcCCc-------HHHHhcCCCC--------cE
Confidence 3589999999999999865 667778999999999999999999999999875 2678988853 79
Q ss_pred EEEEEE-EeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHH
Q 036401 87 FVRLVY-QLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLE 165 (1154)
Q Consensus 87 ~v~~~~-~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e 165 (1154)
+|..+| ...++..++|+|.+.++|.+.|+|||++++..++.++... ++..+|+.+.+...+|..++.+|+
T Consensus 101 ~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~---------li~i~~q~~~~~l~~~~~rr~~LD 171 (517)
T 4ad8_A 101 LVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQG---------RLTIHWQHSAVSLLSPANQRGLLD 171 (517)
T ss_dssp EEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTT---------TEEEESGGGGGTTTSHHHHHHHHH
T ss_pred EEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhh---------heEEeCCchHHhcCCHHHHHHHHH
Confidence 999999 7664678999999999999999999999998888777521 222334445566679999999999
Q ss_pred Hhhcch
Q 036401 166 QISGSD 171 (1154)
Q Consensus 166 ~~~g~~ 171 (1154)
...|..
T Consensus 172 ~~~~~~ 177 (517)
T 4ad8_A 172 RRVTKE 177 (517)
T ss_dssp TSSHHH
T ss_pred HHhCcc
Confidence 887753
No 3
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.96 E-value=8.9e-29 Score=242.25 Aligned_cols=145 Identities=39% Similarity=0.731 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHH
Q 036401 990 VKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAA 1069 (1154)
Q Consensus 990 ~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ 1069 (1154)
+++++...|+.+|..|+..|+.+|..| ++ ||.+.+.+.++.+++..|+.+.+.|+++..+.+..||||||++++
T Consensus 1 ~~~~~~~~f~~~f~~i~~~f~~~f~~L-----~~-~g~~~l~l~~~~~~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~a 74 (173)
T 3kta_B 1 MEKEKKNVFMRTFEAISRNFSEIFAKL-----SP-GGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTA 74 (173)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH-----ST-TCEEEEEESCSSSGGGSCEEEEEETTSSSCCCGGGCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHh-----CC-CCEEEEEeeCCCCccccCceEEecCCCccccccccCCHHHHHHHH
Confidence 356789999999999999999999999 77 899999998889999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEee
Q 036401 1070 LALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYR 1149 (1154)
Q Consensus 1070 la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~ 1149 (1154)
||++||++.+.||||+||||||++||+.++..+.++|+++ . .+.|+|+|||+..++..||++|||+|
T Consensus 75 la~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~------------~-~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 75 LAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES------------S-KESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH------------T-TTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred HHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh------------c-cCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 9999999999999999999999999999999999999999 3 56899999999999999999999999
Q ss_pred cCCC
Q 036401 1150 DSDR 1153 (1154)
Q Consensus 1150 ~~~~ 1153 (1154)
.+|.
T Consensus 142 ~~g~ 145 (173)
T 3kta_B 142 RDGV 145 (173)
T ss_dssp ETTE
T ss_pred cCCE
Confidence 8773
No 4
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.94 E-value=8.3e-27 Score=236.71 Aligned_cols=173 Identities=34% Similarity=0.482 Sum_probs=137.7
Q ss_pred CCceeEEEEecceecc-CceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccc
Q 036401 7 PGKIHRLELENFKSYK-GLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGR 84 (1154)
Q Consensus 7 ~~~i~~l~l~nFks~~-~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~ 84 (1154)
||+|.+|.|.||++|. +...+.|.+++|+|+||||||||||++||+|+||+..+. .|+....++|+.|.. ...+..
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 78 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSK--NEPPAK 78 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC------CCS
T ss_pred CceEEEEEEeCeEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccc--cCCCCc
Confidence 5799999999999994 233466667799999999999999999999999987765 788889999998742 112235
Q ss_pred eEEEEEEEEeCC------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCch
Q 036401 85 RAFVRLVYQLGN------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPK 158 (1154)
Q Consensus 85 ~a~v~~~~~~~~------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~ 158 (1154)
.+.|.++|++++ +..++|.|.+..+|.+.|++||++++.+++.+++..+|+.++... ++.||++..|+.++|.
T Consensus 79 ~~~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~-~~~qg~~~~l~~~~~~ 157 (182)
T 3kta_A 79 YAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYN-IVLQGDITKFIKMSPL 157 (182)
T ss_dssp CEEEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTT-EECTTCTTHHHHSCHH
T ss_pred eEEEEEEEeCCCcccccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCE-EEEcccHHHHHhCCHH
Confidence 789999998753 457999999998888999999999999999999999999987654 6899999999999999
Q ss_pred HHHHHHHHhhcchhhhHHHHHHHH
Q 036401 159 ELTALLEQISGSDELKREYEVLED 182 (1154)
Q Consensus 159 ~~~~~~e~~~g~~~~~~~~~~~~~ 182 (1154)
+|+.+|+.++|+..|...++++.+
T Consensus 158 ~r~~~ld~~~g~~~~~~~~~~~~~ 181 (182)
T 3kta_A 158 ERRLLIDDISGIAEYDSKKEKALE 181 (182)
T ss_dssp HHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHChHHHHHHHHHHhc
Confidence 999999999999999888776543
No 5
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=99.93 E-value=2.1e-25 Score=227.97 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=136.7
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|.+|.|.||+||.+. .+.|.+++|+|+||||||||||++||+||||+. ...|+....++|+.|. ..++
T Consensus 1 M~i~~l~i~nf~~~~~~-~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~-~~~r~~~~~~~i~~~~--------~~~~ 70 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDT-VVEFKEGINLIIGQNGSGKSSLLDAILVGLYWP-LRIKDIKKDEFTKVGA--------RDTY 70 (203)
T ss_dssp CEEEEEEEESBTTBSSE-EEECCSEEEEEECCTTSSHHHHHHHHHHHHHTT-SCCTTCCHHHHHTSCS--------SCEE
T ss_pred CEEEEEEEECCcCccce-EEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCC-cccccccchhhhccCC--------CcEE
Confidence 68999999999999985 466666799999999999999999999999985 3367777789998864 3799
Q ss_pred EEEEEEeCCCceEEEEEEEecCC---CeE---EEECCcc--c---cHHHHHHHHHhcCCcccc--CeeEEecchhhhhhc
Q 036401 88 VRLVYQLGNESELQFTRTITSSG---GSE---YRIDGRV--V---NWDEYNAKLRSLGILVKA--RNFLVFQGDVESIAS 154 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g---~s~---y~in~~~--~---~~~~~~~~l~~~~i~~~~--~~~~i~Qg~v~~i~~ 154 (1154)
|.++|.+. |..++|+|++.++| .+. |..||.. + ..+++.+.+.++ ++.+. +.++++||++.+++.
T Consensus 71 v~l~f~~~-~~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~l~Qg~~~~~l~ 148 (203)
T 3qks_A 71 IDLIFEKD-GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAILE 148 (203)
T ss_dssp EEEEEEET-TEEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHTTEECTTHHHHHHH
T ss_pred EEEEEEEC-CEEEEEEEEEEcCCCCCccceEEEEcCCceeeeccCChHHHHHHHHHH-cCHHHhhEEEEEcCCcHHHHHh
Confidence 99999885 78999999999876 233 6678732 2 245888877665 44422 335889999999999
Q ss_pred CCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHH
Q 036401 155 KNPKELTALLEQISGSDELKREYEVLEDEKGKAEE 189 (1154)
Q Consensus 155 ~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~ 189 (1154)
++ .+|+.+|++++|+..|...++.+...+..++.
T Consensus 149 ~~-~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~ 182 (203)
T 3qks_A 149 SD-EAREKVVREVLNLDKFETAYKKLSELKKTINN 182 (203)
T ss_dssp CH-HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 87 99999999999999999888877776555544
No 6
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=2e-23 Score=231.03 Aligned_cols=158 Identities=30% Similarity=0.513 Sum_probs=117.3
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
|+|++|.|.||+||.+...+.|.+++|+|+||||||||||++||+|++|..+.. .|+....++|+.|... ..+...+
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~--~~~~~~~ 78 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSEN--LPPAGSA 78 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTT--BCCCSEE
T ss_pred CeEeEEEEeCceeecCCeEEecCCCcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccC--CCCCceE
Confidence 589999999999997666677667799999999999999999999999987654 8999999999988632 2345689
Q ss_pred EEEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHH
Q 036401 87 FVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQ 166 (1154)
Q Consensus 87 ~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~ 166 (1154)
+|.++|.+. +.++.|+|++.+.|.+.|++||++++..++...+...|+.+... ++++||+|.+++.++|.+|+.+++.
T Consensus 79 ~v~~~f~~~-~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~-~lv~qg~i~~~~~~~p~~rr~~ld~ 156 (322)
T 1e69_A 79 YVELVFEEN-GEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFY-SIVGQGQIDRIVNASPEELRLESSK 156 (322)
T ss_dssp EEEEEEESS-SCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCC-SEEEHHHHHHHHTC-----------
T ss_pred EEEEEEEeC-CeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhhe-eeEehhhHHHHHhccHHHHHHHHHH
Confidence 999999876 46999999999888889999999999999999988888776442 4788999999999999999999988
Q ss_pred hhc
Q 036401 167 ISG 169 (1154)
Q Consensus 167 ~~g 169 (1154)
..+
T Consensus 157 ~~~ 159 (322)
T 1e69_A 157 HPT 159 (322)
T ss_dssp ---
T ss_pred hhh
Confidence 644
No 7
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.89 E-value=3e-22 Score=226.15 Aligned_cols=171 Identities=22% Similarity=0.319 Sum_probs=134.4
Q ss_pred CCCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccce
Q 036401 6 SPGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRR 85 (1154)
Q Consensus 6 ~~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~ 85 (1154)
|||+|.+|.|.||++|.+. .+.|.+|+|+|+||||||||||||||+|+|+++ .|+....++|+.|+ ..
T Consensus 1 m~M~l~~L~l~nFr~~~~~-~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~---~r~~~~~~~ir~g~--------~~ 68 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNS-RIKFEKGIVAIIGENGSGKSSIFEAVFFALFGA---GSNFNYDTIITKGK--------KS 68 (371)
T ss_dssp CCEEEEEEEEEEETTEEEE-EEECCSEEEEEEECTTSSHHHHHHHHHHHHHCC---C-CCCTTTTBCTTC--------SE
T ss_pred CCcEEeEEEEEccccccce-EEecCCCeEEEECCCCCCHHHHHHHHHHHHcCC---CCccchHhhccCCC--------Cc
Confidence 4689999999999999764 577777899999999999999999999988766 45666789999875 36
Q ss_pred EEEEEEEEeCCCceEEEEEEEecCCCe--EEEECCccccH--HHHHHHHHh-cCCcccc--CeeEEecchhhhhhcCCch
Q 036401 86 AFVRLVYQLGNESELQFTRTITSSGGS--EYRIDGRVVNW--DEYNAKLRS-LGILVKA--RNFLVFQGDVESIASKNPK 158 (1154)
Q Consensus 86 a~v~~~~~~~~~~~~~i~R~i~~~g~s--~y~in~~~~~~--~~~~~~l~~-~~i~~~~--~~~~i~Qg~v~~i~~~~p~ 158 (1154)
|+|+++|... +..+.|+|. .++|.+ .+++||++++. +++...+.+ +|++... +.++++||++..++..+|.
T Consensus 69 ~~V~~~f~~~-~~~~~i~r~-~~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~~~~ 146 (371)
T 3auy_A 69 VYVELDFEVN-GNNYKIIRE-YDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPS 146 (371)
T ss_dssp EEEEEEEEET-TEEEEEEEE-EETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHSCHH
T ss_pred EEEEEEEEEC-CEEEEEEEE-EcCCCCceEEEECCEeecccHHHHHHHHHHHhCcCHHHhCceeeecCccHHHHHhcCHH
Confidence 9999999875 568889988 344443 47899988754 477776655 5665432 2347889999999999999
Q ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHHHHHH
Q 036401 159 ELTALLEQISGSDELKREYEVLEDEKGKAEEK 190 (1154)
Q Consensus 159 ~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (1154)
+|+.+|+.++|...|...+..+...+......
T Consensus 147 ~Rr~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (371)
T 3auy_A 147 EKLETVAKLLGIDEFEKCYQKMGEIVKEYEKR 178 (371)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987877776666655554443
No 8
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=99.87 E-value=2.4e-22 Score=193.51 Aligned_cols=134 Identities=24% Similarity=0.352 Sum_probs=104.3
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|++|.|.||+||.+. .+.|.+++|+|+||||||||||+|||+|+|++... .|+....++|+.|. ..++
T Consensus 1 M~i~~l~i~nf~~~~~~-~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~-~r~~~~~~~~~~~~--------~~~~ 70 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDT-VVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR-IKDIKKDEFTKVGA--------RDTY 70 (149)
T ss_dssp CEEEEEEEESBTTBSSE-EEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC-CTTSSCCCSCSTTC--------CCEE
T ss_pred CEEEEEEEeCcccCcce-EEEcCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-cccCCHHHheecCC--------CcEE
Confidence 68999999999999985 56666679999999999999999999999976532 36667788998764 3689
Q ss_pred EEEEEEeCCCceEEEEEEEecCC-CeEEE--EC--C---ccc--cH-HHHHHHHHhcCCccccCee----EEecchhhhh
Q 036401 88 VRLVYQLGNESELQFTRTITSSG-GSEYR--ID--G---RVV--NW-DEYNAKLRSLGILVKARNF----LVFQGDVESI 152 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g-~s~y~--in--~---~~~--~~-~~~~~~l~~~~i~~~~~~~----~i~Qg~v~~i 152 (1154)
|.++|.+. |..+.|+|++.+.+ .+.|+ +| | +++ .. +++.+.+..+ ++. ..| ++.||++++|
T Consensus 71 v~~~f~~~-~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~--~~f~~~~~i~QG~~~~~ 146 (149)
T 1f2t_A 71 IDLIFEKD-GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPY--NIFLNAIYIRQGQIDAI 146 (149)
T ss_dssp EEEEEEET-TEEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCH--HHHHHHTEECTTHHHHH
T ss_pred EEEEEEEC-CEEEEEEEEEcCCCCceEEEEEeccCCCceEEcccCchHHHHHHHHHH-cCH--HHhhheEEEcCcCHHHH
Confidence 99999765 78999999998744 45566 57 7 333 35 8999988875 443 334 7899999999
Q ss_pred hcC
Q 036401 153 ASK 155 (1154)
Q Consensus 153 ~~~ 155 (1154)
+.|
T Consensus 147 l~~ 149 (149)
T 1f2t_A 147 LES 149 (149)
T ss_dssp TCC
T ss_pred hhC
Confidence 865
No 9
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=2.8e-20 Score=207.24 Aligned_cols=158 Identities=19% Similarity=0.333 Sum_probs=118.6
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|++|+|+||+||.+. .+.|.+++|+|+||||||||||+|||+|+|++.. ..|+....++|+.|. ..++
T Consensus 1 M~i~~l~l~nF~~~~~~-~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~-~~~~~~~~~~~~~~~--------~~~~ 70 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDT-VVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPL-RIKDIKKDEFTKVGA--------RDTY 70 (339)
T ss_dssp CEEEEEEEEEETTEEEE-EEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSC-CCTTCCHHHHBCTTC--------SEEE
T ss_pred CeEEEEEEEcccCccCe-EEcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-ccCcCCHHHHhcCCC--------CeEE
Confidence 58999999999999975 4667778999999999999999999999998743 356667788888764 4799
Q ss_pred EEEEEEeCCCceEEEEEEEecC---CCeEEE---ECCccc-----cHHHHHHHHH---hcCCccccCeeEEecchhhhhh
Q 036401 88 VRLVYQLGNESELQFTRTITSS---GGSEYR---IDGRVV-----NWDEYNAKLR---SLGILVKARNFLVFQGDVESIA 153 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~---g~s~y~---in~~~~-----~~~~~~~~l~---~~~i~~~~~~~~i~Qg~v~~i~ 153 (1154)
|.++|.+. +..+.|.|++.+. |...|. +++..+ ..+++...+. ++++.. +.+++.||+++.++
T Consensus 71 v~~~~~~~-~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~--~~~~i~Qg~~~~il 147 (339)
T 3qkt_A 71 IDLIFEKD-GTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFL--NAIYIRQGQIDAIL 147 (339)
T ss_dssp EEEEEEET-TEEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHH--HHTEECTTCTTGGG
T ss_pred EEEEEEEC-CEEEEEEEEEecCCCCCcceEEEEecCCceeeccccchHHHHHHHHHhcCHHHhh--hheEecchhHHHHH
Confidence 99999876 6789999999874 333333 244322 1233333222 222211 23578999999998
Q ss_pred cCCchHHHHHHHHhhcchhhhHHHHH
Q 036401 154 SKNPKELTALLEQISGSDELKREYEV 179 (1154)
Q Consensus 154 ~~~p~~~~~~~e~~~g~~~~~~~~~~ 179 (1154)
. +|++|+.+|++++|+..|...+..
T Consensus 148 ~-~~~eR~~ll~~l~~~~~~~~~~~~ 172 (339)
T 3qkt_A 148 E-SDEAREKVVREVLNLDKFETAYKK 172 (339)
T ss_dssp S-CTTHHHHHHHHHHTTCTTHHHHHH
T ss_pred h-ChHHHHHHHHHHhCchhHHHHHHH
Confidence 6 699999999999999998766544
No 10
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.71 E-value=5.6e-17 Score=178.70 Aligned_cols=139 Identities=21% Similarity=0.232 Sum_probs=110.2
Q ss_pred CCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceE
Q 036401 7 PGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 7 ~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
+|+|.+|.+.||++|.+.. +.|.+|+|+|+||||||||||++||++++.++ .|+....++|+.|+. .+
T Consensus 3 ~M~i~~L~l~~~~~~~~~~-~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~---~R~~~~~~lI~~g~~--------~~ 70 (359)
T 2o5v_A 3 DVRLSALSTLNYRNLAPGT-LNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ---TDAPRIEQLIQAGET--------EA 70 (359)
T ss_dssp CCCEEEEEEESBTTCCSEE-EECCSEEEEEECCTTSSHHHHHHHHHHHHHSC---CCCSSGGGGBCTTCS--------CE
T ss_pred CcEEeEEEEeCccceeeeE-EEEcCCeEEEECCCCCChhHHHHHHHHhccCC---CCCCCHHHHhccCCC--------cE
Confidence 3699999999999998754 55666799999999999999999999998764 688888999998753 59
Q ss_pred EEEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHH
Q 036401 87 FVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQ 166 (1154)
Q Consensus 87 ~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~ 166 (1154)
+|...|.+. +..+.|.+.+.++| ..++|||++++..++ .|+ +..++.+++. .++..+|++|+.+|+.
T Consensus 71 ~V~~~~~~~-~~~~~i~~~~~~~~-~~~~ing~~~~~~~l------~gl----~~v~~~p~d~-~li~g~p~~RR~flD~ 137 (359)
T 2o5v_A 71 YVRADLQQG-GSLSIQEVGLGRGR-RQLKVDGVRARTGDL------PRG----GAVWIRPEDS-ELVFGPPSGRRAYLDS 137 (359)
T ss_dssp EEEEEEEET-TEEEEEEEEEETTE-EEEEETTEEECGGGC------CSC----CEEEECTTTT-HHHHSCHHHHHHHHHH
T ss_pred EEEEEEecC-CceEEEEEEEECCc-eEEEECCeEcCHHHH------hCc----hheEECcccH-hhhcCCHHHHHHHHHH
Confidence 999999875 55777888887655 588999998884443 231 2344556664 6778999999999999
Q ss_pred hhcc
Q 036401 167 ISGS 170 (1154)
Q Consensus 167 ~~g~ 170 (1154)
+.+.
T Consensus 138 ~l~~ 141 (359)
T 2o5v_A 138 LLSR 141 (359)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 8764
No 11
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.66 E-value=5e-16 Score=173.79 Aligned_cols=155 Identities=26% Similarity=0.360 Sum_probs=110.0
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|++.+|.+.||++|.+.+ +.|..|+++|+||||||||||++||+|+|+++.. |.....+++..+. ....++
T Consensus 1 M~~~~l~~~~f~~~~~~~-i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~--r~~~~~~~~~~~~------~~~~~~ 71 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVD-IEFQSGITVVEGPNGAGKSSLFEAISFALFGNGI--RYPNSYDYVNRNA------VDGTAR 71 (365)
T ss_dssp CEEEEEEEEEETTEEEEE-EECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCS--SCSSGGGGBCTTC------TTCEEE
T ss_pred CeeEEEEEeCccCccceE-EecCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc--cccCcchhhhccC------CCCcEE
Confidence 689999999999999864 6666789999999999999999999999987653 2222233333221 234688
Q ss_pred EEEEEEeCCCceEEEEEEEecCCC----eEEEE--CCccc----cHHHHHHHHH-hcCCcccc--CeeEEecchhhhhhc
Q 036401 88 VRLVYQLGNESELQFTRTITSSGG----SEYRI--DGRVV----NWDEYNAKLR-SLGILVKA--RNFLVFQGDVESIAS 154 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g~----s~y~i--n~~~~----~~~~~~~~l~-~~~i~~~~--~~~~i~Qg~v~~i~~ 154 (1154)
|++.|... |..+.|.|.+.+..+ +-|.+ ||..+ ...++...+. -+|+.... +..++.||++..++.
T Consensus 72 v~~~f~~~-g~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l~ 150 (365)
T 3qf7_A 72 LVFQFERG-GKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLI 150 (365)
T ss_dssp EEEEEEET-TEEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTTT
T ss_pred EEEEEEEC-CEEEEEEEEEeccCCCCccEEEEEcCCCceeecccChHHHHHHHHHHHCCCHHHhceEEEEcccchHHHHh
Confidence 99999765 789999999875311 11222 55432 2234444432 34554321 223789999999999
Q ss_pred CCchHHHHHHHHhhcchh
Q 036401 155 KNPKELTALLEQISGSDE 172 (1154)
Q Consensus 155 ~~p~~~~~~~e~~~g~~~ 172 (1154)
++|.+|+.+|+.+++...
T Consensus 151 ~~~~~r~~~l~~lf~~~~ 168 (365)
T 3qf7_A 151 SPPSEITEIISDVFQSKE 168 (365)
T ss_dssp SCHHHHHHHHHHHTSCHH
T ss_pred cChhhHHHHHHHHHhhHH
Confidence 999999999999999743
No 12
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.65 E-value=2.4e-17 Score=168.83 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=109.9
Q ss_pred CCCCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccc--cccccchhhhc--ccchhhh
Q 036401 5 LSPGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQL--RGGQLKDLIYA--YDDKEKE 80 (1154)
Q Consensus 5 ~~~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~--r~~~~~~~I~~--g~~~~~~ 80 (1154)
..-|+|.+|.+.||.+|.+. .+.+..++++|+||||||||||++||+|++++.++.+ .+..+.+.... +......
T Consensus 2 ~~~~k~~~l~l~~~~~~~~~-~~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 2 IERGKFRSLTLINWNGFFAR-TFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp --CCEEEEEEEEEETTEEEE-EECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGG
T ss_pred CccceeeEEEEEeeecccCC-EEEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhH
Confidence 44679999999999999876 4543336899999999999999999999998876531 22211110000 0000000
Q ss_pred cccceEEEEEEEEeCCCceEEEEEEEe----cC-----------C-CeE-----EEEC------CccccHHHHHHHHHhc
Q 036401 81 QKGRRAFVRLVYQLGNESELQFTRTIT----SS-----------G-GSE-----YRID------GRVVNWDEYNAKLRSL 133 (1154)
Q Consensus 81 ~~~~~a~v~~~~~~~~~~~~~i~R~i~----~~-----------g-~s~-----y~in------~~~~~~~~~~~~l~~~ 133 (1154)
.....++|...+.+...-++.+.|++. ++ | .+. |+++ +.+++.+|+.+.+.+.
T Consensus 81 ~~~~i~~v~~~~~~~~~~~v~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~dv~~~i~~~ 160 (227)
T 1qhl_A 81 LKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM 160 (227)
T ss_dssp BCSSEEEEEEEEECTTSCEEEEEEEEEECSSTTTCEEEEEEEEESCCTTCCHHHHHEECCSSSCCEECCHHHHHHHHHTS
T ss_pred hhcCcEEEEEeeeCCeEEEEEEEecCHHHhccccccccceeecCCcccccccceEEEEecCCCceeecCHHHHHHHHHHH
Confidence 123356665554333223454445542 21 2 121 4443 2457788999999876
Q ss_pred -CCccccCe-------eEEecchhhhhhcCCchHHHHHHHHhhcchhhhHHHHHHHH
Q 036401 134 -GILVKARN-------FLVFQGDVESIASKNPKELTALLEQISGSDELKREYEVLED 182 (1154)
Q Consensus 134 -~i~~~~~~-------~~i~Qg~v~~i~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~ 182 (1154)
|++.+... .++.||++..|+.+ |.+|++ |++++|+..|....+.+..
T Consensus 161 lGl~~~~F~~~~~y~~v~l~QG~f~~fL~a-~~eR~~-l~~l~~~~~y~~~~~~l~~ 215 (227)
T 1qhl_A 161 EGVQFKQFNSITDYHSLMFDLGIIARRLRS-ASDRSK-FYRLIEASLYGGISSAITR 215 (227)
T ss_dssp TTCEEEECSCHHHHHHHHHHTTSBSSCCCS-HHHHHH-HHHHHHHHHSSSCHHHHHH
T ss_pred HCCCHHHhcCccccceEEeccchHHHhhcC-HHHHHH-HHHHHCcHHHHHHHHHHHH
Confidence 77654321 36789999999999 889999 9999999998765554443
No 13
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.63 E-value=6.5e-17 Score=168.45 Aligned_cols=161 Identities=39% Similarity=0.815 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cceecccccccCchhHHHHHHHhhccCCCeEEecChhh
Q 036401 478 LKSKIGEIENQLRELKADRHENERDAKLSQAVETLKRLFQG-VHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENT 556 (1154)
Q Consensus 478 l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~g-v~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~ 556 (1154)
++.++.++..++.+++.......+.......+..++..++| ++|+|++++++.+++|+.||++++|.++++|||++..+
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~ 92 (233)
T 2wd5_A 13 INKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKT 92 (233)
T ss_dssp --------------------------CCHHHHHHHHHHSGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHhCCCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHH
Confidence 33333344444444433333222223345667777777899 99999999998668999999999999999999999877
Q ss_pred HHHHHH-------------------------------------------------HHHHHhCCeEecCChHHHHhhhcc-
Q 036401 557 GKECIK-------------------------------------------------AVLFAVGNTLVCDGLDEAKVLSWS- 586 (1154)
Q Consensus 557 a~~~i~-------------------------------------------------ai~~~lg~~lvve~~~~A~~i~~~- 586 (1154)
+..|+. ++.++||+++||+|++.|..+.+.
T Consensus 93 a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~~~~~~~~~g~~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~ 172 (233)
T 2wd5_A 93 GRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGG 172 (233)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTTCCCCCCCGGGGGCSSCEESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCCCCeEEEECcccccCCcchhccCCCCchHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhc
Confidence 766553 567889999999999999998873
Q ss_pred CCceeEEeeCCeEeecCceeeccCCCCcCcccccCCHHHHHHHHHHHHHHHHH
Q 036401 587 GERFRVVTVDGILLTKAGTMTGGTTGGMEARSKQWDDKKIEGLKRKKEQYESE 639 (1154)
Q Consensus 587 ~~~~~~Vtl~G~~~~~~G~~tgg~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~ 639 (1154)
++++++||++|+++.++|+|+||+..... ....|+.+++..|..+++.+..+
T Consensus 173 ~~~~r~VTldG~~~~~~G~~tGG~~~~~~-~~~~~~~~e~~~l~~~~~~l~~~ 224 (233)
T 2wd5_A 173 HQRHKTVALDGTLFQKSGVISGGASDLKA-KARRWDEKAVDKLKEKKGRLTEE 224 (233)
T ss_dssp SSCCCEEETTCCEECTTSCEEECHHHHHH-HTTHHHHHHTTTCC---------
T ss_pred CCCceEEecCCEEEeCCeeEeCCCchhhh-hhhhccHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998643211 23356666665555555554443
No 14
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.61 E-value=2.7e-15 Score=173.59 Aligned_cols=138 Identities=25% Similarity=0.362 Sum_probs=106.8
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|..|.+.||++|.+.+ +.|.+|+|+|||||||||||||+||++++|+++ ..++|+.|+. .++
T Consensus 38 m~l~~L~i~nf~~l~~v~-l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~~~-------~~~~i~~g~~--------~~~ 101 (415)
T 4aby_A 38 PRLSRLEIRNLATITQLE-LELGGGFCAFTGETGAGKSIIVDALGLLLGGRA-------NHDLIRSGEK--------ELL 101 (415)
T ss_dssp CCCCEEEEEEETTEEEEE-EECCSSEEEEEESHHHHHHHHTHHHHHHTTCCC-------CGGGBCTTCS--------EEE
T ss_pred cEeeeehhccccceeeEE-EecCCCcEEEECCCCCCHHHHHHHHHHHhCCCc-------cHHHhcCCCC--------eEE
Confidence 578999999999999875 556667999999999999999999999999865 3678888753 789
Q ss_pred EEEEE-EeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHH
Q 036401 88 VRLVY-QLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQ 166 (1154)
Q Consensus 88 v~~~~-~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~ 166 (1154)
|...| ...++..+.+.|.+.++|.+.+++||++++..++.++.... ..+++|.. .+...+|..++.+++.
T Consensus 102 v~~~~~~~~~~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~-------i~~~~q~~--~l~l~~~~~~r~~ld~ 172 (415)
T 4aby_A 102 VTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGR-------LTIHWQHS--AVSLLSPANQRGLLDR 172 (415)
T ss_dssp EEEEC--------CEEEEEEETTSCEEEEETTEEECHHHHHHHHTTT-------EEEETTTC--TTTTSSHHHHHHHHHT
T ss_pred EEEEEEecCCCceEEEEEEEecCCceEEEECCEECCHHHHHHHHhhc-------eEEecCcc--cccccCHHHHHHHHHH
Confidence 99999 66656789999999999999999999999988777764211 13566664 3344589999999988
Q ss_pred hhcc
Q 036401 167 ISGS 170 (1154)
Q Consensus 167 ~~g~ 170 (1154)
..+.
T Consensus 173 ~~~~ 176 (415)
T 4aby_A 173 RVTK 176 (415)
T ss_dssp TCHH
T ss_pred Hhcc
Confidence 7664
No 15
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.61 E-value=2.8e-15 Score=142.52 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhh--cc
Q 036401 1001 AFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSI--HS 1078 (1154)
Q Consensus 1001 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~--~~ 1078 (1154)
.+..|......+|..++... |. ...+. . ...++.+.... ....+++..||||||++++||+.||+ .-
T Consensus 10 ~~~~i~~~a~~~~~~~~~~~-~~---~~~~~--~----~~~~~~l~~~~-~~~~~~~~~LSgGe~qrv~lA~~Lalaral 78 (148)
T 1f2t_B 10 ALSKIGELASEIFAEFTEGK-YS---EVVVR--A----EENKVRLFVVW-EGKERPLTFLSGGERIALGLAFRLAMSLYL 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-CC---EEEEE--E----TTSSEEEEEEE-TTEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCc-ch---hHHhh--h----hcCceEEEecc-ccccCChhHCCHHHHHHHHHHhhhHHHHHH
Confidence 55667778888888885322 21 11111 1 11244444322 22346789999999999999876554 22
Q ss_pred cCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecCC
Q 036401 1079 YKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1079 ~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
+.+||++||||||++||+.++..+.++|..+. ..+.++|+|||+..+...||+++-+.+.+|
T Consensus 79 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiiivsH~~~~~~~~d~ii~l~~~~g 140 (148)
T 1f2t_B 79 AGEISLLILDEPTPYLDEERRRKLITIMERYL------------KKIPQVILVSHDEELKDAADHVIRISLENG 140 (148)
T ss_dssp HSSCSEEEEESCSCTTCHHHHHHHHHHHHHTG------------GGSSEEEEEESCGGGGGGCSEEEEEEEETT
T ss_pred cCCCCEEEEECCCccCCHHHHHHHHHHHHHHH------------ccCCEEEEEEChHHHHHhCCEEEEEEcCCC
Confidence 35799999999999999999999999999983 246789999999887789999988876666
No 16
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.60 E-value=2.3e-15 Score=166.27 Aligned_cols=99 Identities=35% Similarity=0.582 Sum_probs=86.3
Q ss_pred ccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCC
Q 036401 1042 GIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDAD 1121 (1154)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~ 1121 (1154)
|+.+...+++.....+..||||||++++||++||...+.|||++||||||++||+.++..+.++|..+
T Consensus 202 g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~------------ 269 (322)
T 1e69_A 202 GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN------------ 269 (322)
T ss_dssp --CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH------------
T ss_pred CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh------------
Confidence 55544445555667789999999999999999998777899999999999999999999999999998
Q ss_pred CCCCeeEEEEEechhHHHhccceEEEeecCCC
Q 036401 1122 EGNGFQSIVISLKDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1122 ~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
. .+.|+|+|||+..++..||+++||++.+|.
T Consensus 270 ~-~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~ 300 (322)
T 1e69_A 270 S-KHTQFIVITHNKIVMEAADLLHGVTMVNGV 300 (322)
T ss_dssp T-TTSEEEEECCCTTGGGGCSEEEEEEESSSC
T ss_pred c-CCCeEEEEECCHHHHhhCceEEEEEEeCCE
Confidence 3 478999999999889999999999999885
No 17
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=99.59 E-value=4.5e-15 Score=144.42 Aligned_cols=95 Identities=36% Similarity=0.684 Sum_probs=87.5
Q ss_pred hcCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH--------------------------------
Q 036401 515 LFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK-------------------------------- 562 (1154)
Q Consensus 515 ~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~-------------------------------- 562 (1154)
.++||+|+|++|+.+ +++|+.||++++| .+++|||++.++|..|+.
T Consensus 15 ~~~Gv~G~v~dLi~v-~~~y~~Aie~alg-~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~~~~~~~~~~~ 92 (166)
T 3l51_B 15 RIPGIYGRLGDLGAI-DEKYDIAISSCCH-ALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWAKKMSKIQTPE 92 (166)
T ss_dssp SSTTEEEEGGGSCBC-CGGGHHHHHHHCG-GGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGTTSCCCCCCGG
T ss_pred CCCCceEEHHHheee-CHHHHHHHHHHHh-hCceEEECCHHHHHHHHHHHHHcCCCeEEEEECccccccccccccccccc
Confidence 478999999999998 5899999999999 899999999999998886
Q ss_pred ------------------HHHHHhCCeEecCChHHHHhhhcc-CCceeEEeeCCeEeecCceeeccCC
Q 036401 563 ------------------AVLFAVGNTLVCDGLDEAKVLSWS-GERFRVVTVDGILLTKAGTMTGGTT 611 (1154)
Q Consensus 563 ------------------ai~~~lg~~lvve~~~~A~~i~~~-~~~~~~Vtl~G~~~~~~G~~tgg~~ 611 (1154)
++.++||+++||+|++.|..+.+. ++++++||++|+++.++|.||||+.
T Consensus 93 ~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 93 NTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp GCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred chhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEECCCEEEeCCEEEECCCc
Confidence 788999999999999999998873 4678999999999999999999974
No 18
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=99.54 E-value=9.5e-15 Score=144.03 Aligned_cols=96 Identities=36% Similarity=0.632 Sum_probs=86.2
Q ss_pred hcCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH--------------------------------
Q 036401 515 LFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK-------------------------------- 562 (1154)
Q Consensus 515 ~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~-------------------------------- 562 (1154)
.++||+|+|++++++++.+|+.||++++|..+++|||++.++|..|+.
T Consensus 32 ~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~~~~~~~~~g~~a~ 111 (189)
T 3nwc_A 32 GIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKPKHVDSSVGLPAV 111 (189)
T ss_dssp CCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTCCCCCCCSCSSEEGG
T ss_pred CCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCccccccCCCCCCcEEe
Confidence 478999999999999644499999999999999999999999988875
Q ss_pred -----------HHHHHhCCeEecCChHHHHhhhccCCceeEEeeCCeEeecCceeeccCCCC
Q 036401 563 -----------AVLFAVGNTLVCDGLDEAKVLSWSGERFRVVTVDGILLTKAGTMTGGTTGG 613 (1154)
Q Consensus 563 -----------ai~~~lg~~lvve~~~~A~~i~~~~~~~~~Vtl~G~~~~~~G~~tgg~~~~ 613 (1154)
++.++||+++||+|++.|+.+ +. ++++||+||+++.++|+|+||+...
T Consensus 112 dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l-~~--~~r~VTldGd~i~~~G~~tGG~~~~ 170 (189)
T 3nwc_A 112 DVIEYDQKIENAVKFALGDTVIVNSMEEARPH-IG--KVRMVTIEGELYERSGAITGGHFRA 170 (189)
T ss_dssp GGEECCGGGHHHHHHHHTTEEEESCSGGGGGG-TT--TSEEEETTSCEECTTSCEECSCSSC
T ss_pred eeeccCHHHHHHHHHHhCCEEEECCHHHHHHH-hC--CCeEEeCCCcEEECCEEEEeCCCCC
Confidence 688999999999999999988 32 6799999999999999999997543
No 19
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=99.54 E-value=7.9e-15 Score=142.22 Aligned_cols=93 Identities=30% Similarity=0.499 Sum_probs=80.1
Q ss_pred CCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH----------------------------------
Q 036401 517 QGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK---------------------------------- 562 (1154)
Q Consensus 517 ~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~---------------------------------- 562 (1154)
+||+|+|++|+++++++|+.||++++|..+++|||++.++|..|+.
T Consensus 15 ~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~~~~GR~tflpL~~i~~~~~~~~~~~~~~~~~~ 94 (161)
T 3l51_A 15 NSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKGELKRRYTIIPLNKISARCIAPETLRVAQNLVG 94 (161)
T ss_dssp GGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHSCCSSCEEEEETTTCCCCCCCHHHHHHHHHHHC
T ss_pred CccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHHhhCCcEEEEECccccccCcCHHHHhhhhhcCC
Confidence 5899999999999668999999999999999999999999988875
Q ss_pred -------------------HHHHHhCCeEecCChHHHHhhhcc-CCceeEEeeCCeEeecCceeecc
Q 036401 563 -------------------AVLFAVGNTLVCDGLDEAKVLSWS-GERFRVVTVDGILLTKAGTMTGG 609 (1154)
Q Consensus 563 -------------------ai~~~lg~~lvve~~~~A~~i~~~-~~~~~~Vtl~G~~~~~~G~~tgg 609 (1154)
++.++||+++||+|++.|+.+++. +.++++||++|++++++|+||||
T Consensus 95 ~~~~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 95 PDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp TTSEEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred CcchhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCeEEcCCEEEecC
Confidence 788999999999999999998874 45789999999999999999997
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.51 E-value=9.6e-15 Score=152.28 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=72.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..||||||||++||++|+.. |+++||||||++||+.++..+.++|.++.++ .+..+|+|||+
T Consensus 141 ~~~~~LSgGq~QRv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~-----------~g~tvi~vtHd 205 (235)
T 3tif_A 141 HKPNQLSGGQQQRVAIARALANN----PPIILADQPTWALDSKTGEKIMQLLKKLNEE-----------DGKTVVVVTHD 205 (235)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-----------HCCEEEEECSC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-----------cCCEEEEEcCC
Confidence 56889999999999999999998 9999999999999999999999999999321 26679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
......||++ +.+++|+
T Consensus 206 ~~~~~~~d~i--~~l~~G~ 222 (235)
T 3tif_A 206 INVARFGERI--IYLKDGE 222 (235)
T ss_dssp HHHHTTSSEE--EEEETTE
T ss_pred HHHHHhCCEE--EEEECCE
Confidence 8888899999 5566664
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.48 E-value=2.6e-14 Score=147.90 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=71.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||||+++||++|+.. |++++|||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 136 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~~~~~l~~l~------------~~g~tvi~vtHd 199 (224)
T 2pcj_A 136 RKPYELSGGEQQRVAIARALANE----PILLFADEPTGNLDSANTKRVMDIFLKIN------------EGGTSIVMVTHE 199 (224)
T ss_dssp CCGGGSCHHHHHHHHHHHHTTTC----CSEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECSC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------HCCCEEEEEcCC
Confidence 45789999999999999999988 99999999999999999999999999993 236679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 200 ~~~~~~~d~v~--~l~~G~ 216 (224)
T 2pcj_A 200 RELAELTHRTL--EMKDGK 216 (224)
T ss_dssp HHHHTTSSEEE--EEETTE
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 87778899984 456664
No 22
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=141.14 Aligned_cols=96 Identities=20% Similarity=0.372 Sum_probs=84.0
Q ss_pred hcCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH--------------------------------
Q 036401 515 LFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK-------------------------------- 562 (1154)
Q Consensus 515 ~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~-------------------------------- 562 (1154)
.++|++|+|++++++ +++|+.||++++|.++++|||++..++..|+.
T Consensus 45 ~~~g~~g~l~dli~v-~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~~~~~~~~~~~~~~ 123 (213)
T 2wd5_B 45 VQNGYHGIVMNNFEC-EPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAYPETNDA 123 (213)
T ss_dssp HHTTEEEEGGGSEEC-CGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTCCCCCCCCCCCSSE
T ss_pred cCCCceeeHHHhccc-CHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECcccCcccCCCCCCCCc
Confidence 468999999999998 68999999999999999999998877665542
Q ss_pred ---------------HHHHHhCCeEecCChHHHHhhhccCCceeEEeeCCeEeecCceeeccCCC
Q 036401 563 ---------------AVLFAVGNTLVCDGLDEAKVLSWSGERFRVVTVDGILLTKAGTMTGGTTG 612 (1154)
Q Consensus 563 ---------------ai~~~lg~~lvve~~~~A~~i~~~~~~~~~Vtl~G~~~~~~G~~tgg~~~ 612 (1154)
++.++||+++||+|+++|..+.+. .++++||++|+++.++|+|+||+..
T Consensus 124 ~~l~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~-~~~~~VTldG~~~~~~G~~tgG~~~ 187 (213)
T 2wd5_B 124 IPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARA-FTMDCITLEGDQVSHRGALTGGYYD 187 (213)
T ss_dssp EEGGGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHH-SSCEEECTTCCEECTTSCEEECCCC
T ss_pred eeHHHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHh-cCceEEeCCCcEECCCeEEECCCCC
Confidence 678899999999999999998763 2578999999999999999999753
No 23
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.44 E-value=5.8e-14 Score=149.09 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=70.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..||||||||++||++|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 139 ~~~~~LSgGqkQRv~iAraL~~~----P~lLlLDEPts~LD~~~~~~i~~~l~~l~~-----------~~g~tvi~vtHd 203 (275)
T 3gfo_A 139 KPTHCLSFGQKKRVAIAGVLVME----PKVLILDEPTAGLDPMGVSEIMKLLVEMQK-----------ELGITIIIATHD 203 (275)
T ss_dssp SBGGGSCHHHHHHHHHHHHHTTC----CSEEEEECTTTTCCHHHHHHHHHHHHHHHH-----------HHCCEEEEEESC
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECccccCCHHHHHHHHHHHHHHHh-----------hCCCEEEEEecC
Confidence 56889999999999999999998 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||++ +.+.+|+
T Consensus 204 l~~~~~~~drv--~~l~~G~ 221 (275)
T 3gfo_A 204 IDIVPLYCDNV--FVMKEGR 221 (275)
T ss_dssp CSSGGGGCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 7666 589999 4566664
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.44 E-value=8.3e-14 Score=147.01 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||||+++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 155 ~~~~~LSgGqkQRv~lAraL~~~----p~lllLDEPts~LD~~~~~~~~~~l~~l~------------~~g~tvi~vtHd 218 (263)
T 2olj_A 155 AYPDSLSGGQAQRVAIARALAME----PKIMLFDEPTSALDPEMVGEVLSVMKQLA------------NEGMTMVVVTHE 218 (263)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESTTTTSCHHHHHHHHHHHHHHH------------HTTCEEEEECSC
T ss_pred CChhhCCHHHHHHHHHHHHHHCC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEcCC
Confidence 56789999999999999999998 99999999999999999999999999993 236679999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+.+|+
T Consensus 219 ~~~~~~~~d~v~--~l~~G~ 236 (263)
T 2olj_A 219 MGFAREVGDRVL--FMDGGY 236 (263)
T ss_dssp HHHHHHHCSEEE--EEETTE
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 77664 899995 455554
No 25
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.43 E-value=8.6e-14 Score=147.56 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=70.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.. .+..+|+|||+
T Consensus 149 ~~~~~LSgGq~qRv~lAraL~~~----p~lllLDEPts~LD~~~~~~~~~~l~~l~~------------~g~tvi~vtHd 212 (262)
T 1b0u_A 149 KYPVHLSGGQQQRVSIARALAME----PDVLLFDEPTSALDPELVGEVLRIMQQLAE------------EGKTMVVVTHE 212 (262)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTC----CSEEEEESTTTTSCHHHHHHHHHHHHHHHH------------TTCCEEEECSC
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHh------------CCCEEEEEeCC
Confidence 45789999999999999999998 999999999999999999999999999942 35669999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 213 ~~~~~~~~d~v~--~l~~G~ 230 (262)
T 1b0u_A 213 MGFARHVSSHVI--FLHQGK 230 (262)
T ss_dssp HHHHHHHCSEEE--EEETTE
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7766 4899984 456664
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.43 E-value=1.2e-13 Score=143.99 Aligned_cols=82 Identities=23% Similarity=0.181 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++.++ .+..+|+|||+
T Consensus 122 ~~~~~LSgGqkqRv~lAral~~~----p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-----------~g~tvi~vtHd 186 (240)
T 2onk_A 122 RKPARLSGGERQRVALARALVIQ----PRLLLLDEPLSAVDLKTKGVLMEELRFVQRE-----------FDVPILHVTHD 186 (240)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTC----CSSBEEESTTSSCCHHHHHHHHHHHHHHHHH-----------HTCCEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-----------cCCEEEEEeCC
Confidence 45789999999999999999998 9999999999999999999999999998421 24569999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+++|+
T Consensus 187 ~~~~~~~~d~i~--~l~~G~ 204 (240)
T 2onk_A 187 LIEAAMLADEVA--VMLNGR 204 (240)
T ss_dssp HHHHHHHCSEEE--EEETTE
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 765 46899984 455654
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.43 E-value=1.2e-13 Score=144.55 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||||+++||++|+.. |++++|||||++||+.++..+.++|.++.+ .+..+|+|||+
T Consensus 135 ~~~~~LSgGq~qrv~lAraL~~~----p~lllLDEPts~LD~~~~~~l~~~l~~~~~------------~g~tvi~vtHd 198 (240)
T 1ji0_A 135 QLGGTLSGGEQQMLAIGRALMSR----PKLLMMDEPSLGLAPILVSEVFEVIQKINQ------------EGTTILLVEQN 198 (240)
T ss_dssp SBSSSSCHHHHHHHHHHHHHTTC----CSEEEEECTTTTCCHHHHHHHHHHHHHHHH------------TTCCEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH------------CCCEEEEEecC
Confidence 45789999999999999999988 999999999999999999999999999942 35669999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+++|+
T Consensus 199 ~~~~~~~~d~v~--~l~~G~ 216 (240)
T 1ji0_A 199 ALGALKVAHYGY--VLETGQ 216 (240)
T ss_dssp HHHHHHHCSEEE--EEETTE
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 754 56899985 455654
No 28
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.43 E-value=8.6e-14 Score=151.90 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=71.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++.+||||||||++||++|+.. |++++|||||++||+.++..+.++|+++.+ ..+..+|+|||+
T Consensus 159 ~~~~~LSGGqkQRVaIArAL~~~----P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~-----------~~g~Tii~vTHd 223 (366)
T 3tui_C 159 SYPSNLSGGQKQRVAIARALASN----PKVLLCDQATSALDPATTRSILELLKDINR-----------RLGLTILLITHE 223 (366)
T ss_dssp CCTTTSCHHHHHHHHHHHHTTTC----CSEEEEESTTTTSCHHHHHHHHHHHHHHHH-----------HSCCEEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCccCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEecC
Confidence 56889999999999999999998 999999999999999999999999999842 136679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||++ +.|++|+
T Consensus 224 l~~~~~~aDrv--~vl~~G~ 241 (366)
T 3tui_C 224 MDVVKRICDCV--AVISNGE 241 (366)
T ss_dssp HHHHHHHCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 7766 589999 4566664
No 29
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.43 E-value=3.1e-13 Score=150.27 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=76.9
Q ss_pred CCcccccccCchhhHHHHHHHHHHhh--cccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1051 TKRFRDMEQLSGGEKTVAALALLFSI--HSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1051 ~~~~~~~~~lSgGek~~~~la~~~a~--~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
....+++..||||||++++||+.+++ ..+.+||++|||||+++||+..+..+.++|..+. ..+.|+
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~------------~~~~~v 307 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL------------KKIPQV 307 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG------------GGSSEE
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hcCCEE
Confidence 34457899999999998887765544 3346799999999999999999999999999983 346689
Q ss_pred EEEEechhHHHhccceEEEeecCCC
Q 036401 1129 IVISLKDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1129 i~it~~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
|+|||+..++..||+++-+.+.+|.
T Consensus 308 i~~sH~~~~~~~~d~~~~l~~~~g~ 332 (339)
T 3qkt_A 308 ILVSHDEELKDAADHVIRISLENGS 332 (339)
T ss_dssp EEEESCGGGGGGCSEEEEEEEETTE
T ss_pred EEEEChHHHHHhCCEEEEEEecCCc
Confidence 9999999988999999999888773
No 30
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.42 E-value=1.2e-13 Score=146.43 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=71.0
Q ss_pred ccccccCchhhHHHHHHHHHHhh-cccC-CCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSI-HSYK-PSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~-~~~~-p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
.+.+..||||||||++||++|+. |... .|+++||||||++||+.++..+.++|+++.+ ..+..+|+|
T Consensus 136 ~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-----------~~~~tvi~v 204 (266)
T 4g1u_C 136 QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-----------QEPLAVCCV 204 (266)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-----------HSSEEEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-----------cCCCEEEEE
Confidence 35678999999999999999997 2110 1999999999999999999999999999831 124679999
Q ss_pred EechhHHH-hccceEEEeecCCC
Q 036401 1132 SLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
||+...+. .||++ +.|++|+
T Consensus 205 tHdl~~~~~~~d~v--~vl~~G~ 225 (266)
T 4g1u_C 205 LHDLNLAALYADRI--MLLAQGK 225 (266)
T ss_dssp CSCHHHHHHHCSEE--EEEETTE
T ss_pred EcCHHHHHHhCCEE--EEEECCE
Confidence 99977664 89999 4566664
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.42 E-value=1.1e-13 Score=146.64 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=70.9
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||||+++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 148 ~~~~~~LSgGqkQrv~iAraL~~~----p~lllLDEPts~LD~~~~~~l~~~l~~l~------------~~g~tvi~vtH 211 (257)
T 1g6h_A 148 DRKAGELSGGQMKLVEIGRALMTN----PKMIVMDEPIAGVAPGLAHDIFNHVLELK------------AKGITFLIIEH 211 (257)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTC----CSEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECS
T ss_pred CCCchhCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHH------------HCCCEEEEEec
Confidence 356889999999999999999988 99999999999999999999999999993 23667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .+.+|+
T Consensus 212 d~~~~~~~~d~v~--~l~~G~ 230 (257)
T 1g6h_A 212 RLDIVLNYIDHLY--VMFNGQ 230 (257)
T ss_dssp CCSTTGGGCSEEE--EEETTE
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 96655 5899995 455554
No 32
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.42 E-value=1.8e-13 Score=144.35 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=65.6
Q ss_pred ccccc-CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQ-LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~-lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
+.+.. |||||||+++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 138 ~~~~~~LSgGqkQrv~iAraL~~~----p~lllLDEPts~LD~~~~~~l~~~l~~l~------------~~g~tvi~vtH 201 (250)
T 2d2e_A 138 RYLNEGFSGGEKKRNEILQLLVLE----PTYAVLDETDSGLDIDALKVVARGVNAMR------------GPNFGALVITH 201 (250)
T ss_dssp SBTTCC----HHHHHHHHHHHHHC----CSEEEEECGGGTTCHHHHHHHHHHHHHHC------------STTCEEEEECS
T ss_pred CCcccCCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------hcCCEEEEEec
Confidence 34667 999999999999999998 99999999999999999999999999993 34678999999
Q ss_pred chhHHH-h-ccceEEEeecCCC
Q 036401 1134 KDSFYD-K-AEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~-~d~~~GV~~~~~~ 1153 (1154)
+...+. . ||+++ .+++|+
T Consensus 202 d~~~~~~~~~d~v~--~l~~G~ 221 (250)
T 2d2e_A 202 YQRILNYIQPDKVH--VMMDGR 221 (250)
T ss_dssp SSGGGGTSCCSEEE--EEETTE
T ss_pred CHHHHHHhcCCEEE--EEECCE
Confidence 987776 4 59985 455554
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.42 E-value=1.5e-13 Score=144.68 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++..+ .+..+|+|||+
T Consensus 124 ~~~~~LSgGq~qrv~lAraL~~~----p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-----------~g~tvi~vtHd 188 (253)
T 2nq2_C 124 REFTSLSGGQRQLILIARAIASE----CKLILLDEPTSALDLANQDIVLSLLIDLAQS-----------QNMTVVFTTHQ 188 (253)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTT----CSEEEESSSSTTSCHHHHHHHHHHHHHHHHT-----------SCCEEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-----------cCCEEEEEecC
Confidence 46789999999999999999998 9999999999999999999999999998311 26679999999
Q ss_pred hhHH-HhccceEEEeecCC
Q 036401 1135 DSFY-DKAEALVGVYRDSD 1152 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~ 1152 (1154)
...+ ..||+++- +.+|
T Consensus 189 ~~~~~~~~d~v~~--l~~G 205 (253)
T 2nq2_C 189 PNQVVAIANKTLL--LNKQ 205 (253)
T ss_dssp HHHHHHHCSEEEE--EETT
T ss_pred HHHHHHhCCEEEE--EeCC
Confidence 7766 68999854 4555
No 34
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.42 E-value=1.4e-13 Score=144.58 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=71.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 141 ~~~~~LSgGq~qRv~iAraL~~~----p~lllLDEPts~LD~~~~~~i~~~l~~~------------~-~g~tviivtH~ 203 (247)
T 2ff7_A 141 EQGAGLSGGQRQRIAIARALVNN----PKILIFDEATSALDYESEHVIMRNMHKI------------C-KGRTVIIIAHR 203 (247)
T ss_dssp TTTTCCCHHHHHHHHHHHHHTTC----CSEEEECCCCSCCCHHHHHHHHHHHHHH------------H-TTSEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------c-CCCEEEEEeCC
Confidence 45779999999999999999988 9999999999999999999999999998 2 36679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 204 ~~~~~~~d~v~--~l~~G~ 220 (247)
T 2ff7_A 204 LSTVKNADRII--VMEKGK 220 (247)
T ss_dssp GGGGTTSSEEE--EEETTE
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 88888899985 456664
No 35
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.42 E-value=1.4e-13 Score=144.71 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=70.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 142 ~~~~~LSgGq~qRv~lAraL~~~----p~lllLDEPts~LD~~~~~~l~~~l~~l~------------~~g~tiiivtHd 205 (256)
T 1vpl_A 142 DRVSTYSKGMVRKLLIARALMVN----PRLAILDEPTSGLDVLNAREVRKILKQAS------------QEGLTILVSSHN 205 (256)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTC----CSEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEEECC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCccccCHHHHHHHHHHHHHHH------------hCCCEEEEEcCC
Confidence 45789999999999999999998 99999999999999999999999999993 246679999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+.+|+
T Consensus 206 ~~~~~~~~d~v~--~l~~G~ 223 (256)
T 1vpl_A 206 MLEVEFLCDRIA--LIHNGT 223 (256)
T ss_dssp HHHHTTTCSEEE--EEETTE
T ss_pred HHHHHHHCCEEE--EEECCE
Confidence 77765 699984 456664
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.42 E-value=2e-13 Score=145.20 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=69.5
Q ss_pred cccc-cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDME-QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~-~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
+.+. .||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 159 ~~~~~~LSgGq~QRv~iAraL~~~----p~lLlLDEPts~LD~~~~~~l~~~l~~l~------------~~g~tviivtH 222 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDILQMAVLE----PELCILDESDSGLDIDALKVVADGVNSLR------------DGKRSFIIVTH 222 (267)
T ss_dssp SBTTTTCCHHHHHHHHHHHHHHHC----CSEEEEESTTTTCCHHHHHHHHHHHHTTC------------CSSCEEEEECS
T ss_pred CCcccCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------hcCCEEEEEee
Confidence 4455 5999999999999999998 99999999999999999999999999983 34678999999
Q ss_pred chhHHH-h-ccceEEEeecCCC
Q 036401 1134 KDSFYD-K-AEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~-~d~~~GV~~~~~~ 1153 (1154)
+...+. . ||+++ .+.+|+
T Consensus 223 d~~~~~~~~~d~v~--~l~~G~ 242 (267)
T 2zu0_C 223 YQRILDYIKPDYVH--VLYQGR 242 (267)
T ss_dssp SGGGGGTSCCSEEE--EEETTE
T ss_pred CHHHHHhhcCCEEE--EEECCE
Confidence 987776 3 89985 455554
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.42 E-value=1.7e-13 Score=145.03 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=71.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. ||++||||||++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 151 ~~~~~LSgGqkqRv~lAraL~~~----p~lllLDEPts~LD~~~~~~i~~~l~~l------------~-~~~tviivtH~ 213 (260)
T 2ghi_A 151 NKGMKLSGGERQRIAIARCLLKD----PKIVIFDEATSSLDSKTEYLFQKAVEDL------------R-KNRTLIIIAHR 213 (260)
T ss_dssp SSSBCCCHHHHHHHHHHHHHHHC----CSEEEEECCCCTTCHHHHHHHHHHHHHH------------T-TTSEEEEECSS
T ss_pred CCcCcCCHHHHHHHHHHHHHHcC----CCEEEEECccccCCHHHHHHHHHHHHHh------------c-CCCEEEEEcCC
Confidence 35779999999999999999998 9999999999999999999999999999 3 36789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+++|+
T Consensus 214 ~~~~~~~d~i~--~l~~G~ 230 (260)
T 2ghi_A 214 LSTISSAESII--LLNKGK 230 (260)
T ss_dssp GGGSTTCSEEE--EEETTE
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 88888899985 456664
No 38
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.41 E-value=2.2e-13 Score=145.08 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=71.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||||+++||++|+.. |+++||||||++||+.++..+.++|.++. ...+..+|+|||+
T Consensus 152 ~~~~~LSgGq~QRv~lAraL~~~----p~lllLDEPts~LD~~~~~~i~~~l~~~~-----------~~~g~tviivtHd 216 (271)
T 2ixe_A 152 ETGNQLSGGQRQAVALARALIRK----PRLLILDNATSALDAGNQLRVQRLLYESP-----------EWASRTVLLITQQ 216 (271)
T ss_dssp GGGTTSCHHHHHHHHHHHHHTTC----CSEEEEESTTTTCCHHHHHHHHHHHHHCT-----------TTTTSEEEEECSC
T ss_pred CCcCCCCHHHHHHHHHHHHHhcC----CCEEEEECCccCCCHHHHHHHHHHHHHHH-----------hhcCCEEEEEeCC
Confidence 56789999999999999999988 99999999999999999999999999982 1136789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 217 ~~~~~~~d~v~--~l~~G~ 233 (271)
T 2ixe_A 217 LSLAERAHHIL--FLKEGS 233 (271)
T ss_dssp HHHHTTCSEEE--EEETTE
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 88888899985 455554
No 39
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.41 E-value=2.2e-12 Score=149.01 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=70.6
Q ss_pred ccccccC-chhhHHHHHHHHHHhhcccCCC--CeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1054 FRDMEQL-SGGEKTVAALALLFSIHSYKPS--PFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1054 ~~~~~~l-SgGek~~~~la~~~a~~~~~p~--~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
.+++..+ ||||+++++||++|+.. | |++||||||++||+..+..|.++|..+ . .+.|+||
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~----~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l------------~-~~~~vi~ 351 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLG----ADTPSVVFDEVDAGIGGAAAIAVAEQLSRL------------A-DTRQVLV 351 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHC----CSSSEEEESSTTTTCCHHHHHHHHHHHHHH------------T-TTSEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhC----CCCCEEEEECCCCCCCHHHHHHHHHHHHHH------------h-CCCEEEE
Confidence 3556555 99999999999988866 6 999999999999999999999999999 4 5889999
Q ss_pred EEechhHHHhccceEEEee
Q 036401 1131 ISLKDSFYDKAEALVGVYR 1149 (1154)
Q Consensus 1131 it~~~~~~~~~d~~~GV~~ 1149 (1154)
|||+..++..||+++-|.+
T Consensus 352 itH~~~~~~~~d~i~~l~k 370 (415)
T 4aby_A 352 VTHLAQIAARAHHHYKVEK 370 (415)
T ss_dssp ECSCHHHHTTCSEEEEEEE
T ss_pred EeCcHHHHhhcCeEEEEEE
Confidence 9999999999999987755
No 40
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.39 E-value=1.6e-13 Score=144.19 Aligned_cols=80 Identities=24% Similarity=0.313 Sum_probs=71.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 135 ~~~~~LSgGq~qrv~lAral~~~----p~lllLDEPts~LD~~~~~~i~~~l~~~------------~-~~~tvi~vtH~ 197 (243)
T 1mv5_A 135 ERGVKISGGQRQRLAIARAFLRN----PKILMLDEATASLDSESESMVQKALDSL------------M-KGRTTLVIAHR 197 (243)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHC----CSEEEEECCSCSSCSSSCCHHHHHHHHH------------H-TTSEEEEECCS
T ss_pred cCcCcCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHHHHHHh------------c-CCCEEEEEeCC
Confidence 45789999999999999999998 9999999999999999999999999998 3 46779999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+++|+
T Consensus 198 ~~~~~~~d~v~--~l~~G~ 214 (243)
T 1mv5_A 198 LSTIVDADKIY--FIEKGQ 214 (243)
T ss_dssp HHHHHHCSEEE--EEETTE
T ss_pred hHHHHhCCEEE--EEECCE
Confidence 88888899985 455554
No 41
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.39 E-value=2.3e-13 Score=148.70 Aligned_cols=83 Identities=24% Similarity=0.247 Sum_probs=71.0
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+.+||||||||++||++|+.. |++++||||+++||+..+..+...|..+.+ ..+..+|+|||
T Consensus 133 ~r~~~~LSGGq~QRValArAL~~~----P~lLLLDEPts~LD~~~r~~l~~~l~~~~~-----------~~g~tvi~vTH 197 (359)
T 3fvq_A 133 GRYPHELSGGQQQRAALARALAPD----PELILLDEPFSALDEQLRRQIREDMIAALR-----------ANGKSAVFVSH 197 (359)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESTTTTSCHHHHHHHHHHHHHHHH-----------HTTCEEEEECC
T ss_pred cCChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEeC
Confidence 367889999999999999999998 999999999999999999999988877631 24677999999
Q ss_pred ch-hHHHhccceEEEeecCCC
Q 036401 1134 KD-SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~-~~~~~~d~~~GV~~~~~~ 1153 (1154)
+. ..+.+||++ +.|++|+
T Consensus 198 d~~ea~~~aDri--~vl~~G~ 216 (359)
T 3fvq_A 198 DREEALQYADRI--AVMKQGR 216 (359)
T ss_dssp CHHHHHHHCSEE--EEEETTE
T ss_pred CHHHHHHHCCEE--EEEECCE
Confidence 95 555799999 5577775
No 42
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.39 E-value=2.3e-13 Score=142.47 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=70.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCC-------eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCee
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSP-------FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQ 1127 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~-------~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q 1127 (1154)
+.+..||||||++++||++|+.. |+ +++|||||++||+.++..+.++|.++. ..+..
T Consensus 122 ~~~~~LSgGq~qrv~lAraL~~~----p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~------------~~g~t 185 (249)
T 2qi9_C 122 RSTNQLSGGEWQRVRLAAVVLQI----TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS------------QQGLA 185 (249)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHHH----CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH------------HTTCE
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH------------hCCCE
Confidence 46889999999999999999998 88 999999999999999999999999993 23667
Q ss_pred EEEEEechhHH-HhccceEEEeecCCC
Q 036401 1128 SIVISLKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1128 ~i~it~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+|+|||+...+ ..||+++ .+++|+
T Consensus 186 viivtHd~~~~~~~~d~v~--~l~~G~ 210 (249)
T 2qi9_C 186 IVMSSHDLNHTLRHAHRAW--LLKGGK 210 (249)
T ss_dssp EEEECSCHHHHHHHCSEEE--EEETTE
T ss_pred EEEEeCCHHHHHHhCCEEE--EEECCE
Confidence 99999997776 6899985 455554
No 43
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.39 E-value=3.1e-13 Score=145.34 Aligned_cols=80 Identities=24% Similarity=0.239 Sum_probs=71.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.....||||||||++||++|+.. ||++||||||++||+.+...+.+.|..+. .+..+|+|||+
T Consensus 186 ~~g~~LSGGqrQRvaiARAL~~~----p~iLlLDEPts~LD~~~~~~i~~~l~~l~-------------~~~Tvi~itH~ 248 (306)
T 3nh6_A 186 ERGLKLSGGEKQRVAIARTILKA----PGIILLDEATSALDTSNERAIQASLAKVC-------------ANRTTIVVAHR 248 (306)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHC----CSEEEEECCSSCCCHHHHHHHHHHHHHHH-------------TTSEEEEECCS
T ss_pred CCcCCCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHHc-------------CCCEEEEEEcC
Confidence 34679999999999999999998 99999999999999999999999999982 45789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
..++..||+++ .|++|+
T Consensus 249 l~~~~~aD~i~--vl~~G~ 265 (306)
T 3nh6_A 249 LSTVVNADQIL--VIKDGC 265 (306)
T ss_dssp HHHHHTCSEEE--EEETTE
T ss_pred hHHHHcCCEEE--EEECCE
Confidence 99998999994 566664
No 44
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.39 E-value=2.1e-13 Score=150.08 Aligned_cols=82 Identities=23% Similarity=0.252 Sum_probs=71.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++.+||||||||++||++|+.. |++++||||+++||+..+..+..+|+++.++ .+..+|+|||+
T Consensus 129 r~p~~LSGGqrQRVaiArAL~~~----P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~-----------~g~tii~vTHd 193 (381)
T 3rlf_A 129 RKPKALSGGQRQRVAIGRTLVAE----PSVFLLDEPLSNLDAALRVQMRIEISRLHKR-----------LGRTMIYVTHD 193 (381)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHC----CSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-----------HCCEEEEECSC
T ss_pred CChhHCCHHHHHHHHHHHHHHcC----CCEEEEECCCcCCCHHHHHHHHHHHHHHHHh-----------CCCEEEEEECC
Confidence 56889999999999999999998 9999999999999999999999999998421 25679999999
Q ss_pred h-hHHHhccceEEEeecCCC
Q 036401 1135 D-SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~-~~~~~~d~~~GV~~~~~~ 1153 (1154)
. ..+.+||++ +.|++|+
T Consensus 194 ~~ea~~~aDri--~vl~~G~ 211 (381)
T 3rlf_A 194 QVEAMTLADKI--VVLDAGR 211 (381)
T ss_dssp HHHHHHHCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 5 566799999 5677775
No 45
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.39 E-value=1.9e-13 Score=145.40 Aligned_cols=82 Identities=24% Similarity=0.193 Sum_probs=71.0
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 133 ~~~~~~LSgGq~qRv~lAraL~~~----p~lllLDEPts~LD~~~~~~l~~~l~~l~------------~~g~tii~vtH 196 (266)
T 2yz2_A 133 DRVPFFLSGGEKRRVAIASVIVHE----PDILILDEPLVGLDREGKTDLLRIVEKWK------------TLGKTVILISH 196 (266)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECS
T ss_pred cCChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCccccCCHHHHHHHHHHHHHHH------------HcCCEEEEEeC
Confidence 356789999999999999999998 99999999999999999999999999983 23667999999
Q ss_pred chhHHH-hccceEEEeecCCC
Q 036401 1134 KDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
+...+. .||+++ .+++|+
T Consensus 197 d~~~~~~~~d~v~--~l~~G~ 215 (266)
T 2yz2_A 197 DIETVINHVDRVV--VLEKGK 215 (266)
T ss_dssp CCTTTGGGCSEEE--EEETTE
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 977665 799985 455654
No 46
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.38 E-value=3.5e-13 Score=147.51 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=72.0
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+.+||||||||++||++|+.. |++++||||+++||+..+..+.++|+++.+ ..+..+|+|||
T Consensus 122 ~~~~~~LSgGq~QRvalAraL~~~----P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~-----------~~g~tii~vTH 186 (348)
T 3d31_A 122 DRNPLTLSGGEQQRVALARALVTN----PKILLLDEPLSALDPRTQENAREMLSVLHK-----------KNKLTVLHITH 186 (348)
T ss_dssp TSCGGGSCHHHHHHHHHHHHTTSC----CSEEEEESSSTTSCHHHHHHHHHHHHHHHH-----------HTTCEEEEEES
T ss_pred cCChhhCCHHHHHHHHHHHHHHcC----CCEEEEECccccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeC
Confidence 356889999999999999999998 999999999999999999999999999842 13667999999
Q ss_pred chh-HHHhccceEEEeecCCC
Q 036401 1134 KDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
+.. .+.+||++ +.|++|+
T Consensus 187 d~~~~~~~adri--~vl~~G~ 205 (348)
T 3d31_A 187 DQTEARIMADRI--AVVMDGK 205 (348)
T ss_dssp CHHHHHHHCSEE--EEESSSC
T ss_pred CHHHHHHhCCEE--EEEECCE
Confidence 954 56799999 5577775
No 47
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.38 E-value=3.2e-13 Score=148.49 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=71.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+.+||||||||++||++|+.. |++++||||+++||+..+..+..+|+++.++ .+..+|+|||+
T Consensus 129 r~~~~LSGGq~QRvalArAL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-----------~g~tvi~vTHd 193 (362)
T 2it1_A 129 RYPWQLSGGQQQRVAIARALVKE----PEVLLLDEPLSNLDALLRLEVRAELKRLQKE-----------LGITTVYVTHD 193 (362)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESGGGGSCHHHHHHHHHHHHHHHHH-----------HTCEEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEECccccCCHHHHHHHHHHHHHHHHh-----------CCCEEEEECCC
Confidence 56789999999999999999998 9999999999999999999999999998321 25679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+.+||++ +.|++|+
T Consensus 194 ~~~a~~~adri--~vl~~G~ 211 (362)
T 2it1_A 194 QAEALAMADRI--AVIREGE 211 (362)
T ss_dssp HHHHHHHCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 54 56799999 5566664
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=140.91 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHH---hcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIR---SKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~---~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|. .+ . .+..+|+|
T Consensus 123 ~~~~~LSgGqkqRv~lAraL~~~----p~lllLDEPts~LD~~~~~~i~~~l~~~~~~------------~-~~~tviiv 185 (237)
T 2cbz_A 123 EKGVNLSGGQKQRVSLARAVYSN----ADIYLFDDPLSAVDAHVGKHIFENVIGPKGM------------L-KNKTRILV 185 (237)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHC----CSEEEEESTTTTSCHHHHHHHHHHTTSTTST------------T-TTSEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCcccccCHHHHHHHHHHHHHHHhh------------c-CCCEEEEE
Confidence 45789999999999999999998 99999999999999999999999995 44 2 46789999
Q ss_pred EechhHHHhccceEEEeecCCC
Q 036401 1132 SLKDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
||+...+..||+++ .+.+|+
T Consensus 186 tH~~~~~~~~d~v~--~l~~G~ 205 (237)
T 2cbz_A 186 THSMSYLPQVDVII--VMSGGK 205 (237)
T ss_dssp CSCSTTGGGSSEEE--EEETTE
T ss_pred ecChHHHHhCCEEE--EEeCCE
Confidence 99987778899985 455554
No 49
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.38 E-value=3e-13 Score=144.31 Aligned_cols=81 Identities=20% Similarity=0.127 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE--EEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS--IVIS 1132 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~--i~it 1132 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.++ +..+ |+||
T Consensus 157 ~~~~~LSgGqkqRv~lAraL~~~----p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~------------g~tv~~iivt 220 (279)
T 2ihy_A 157 QYIGYLSTGEKQRVMIARALMGQ----PQVLILDEPAAGLDFIARESLLSILDSLSDS------------YPTLAMIYVT 220 (279)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTC----CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH------------CTTCEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHhCC----CCEEEEeCCccccCHHHHHHHHHHHHHHHHC------------CCEEEEEEEe
Confidence 56789999999999999999998 9999999999999999999999999999422 4458 9999
Q ss_pred echhHH-HhccceEEEeecCCC
Q 036401 1133 LKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
|+...+ ..||+++ .+.+|+
T Consensus 221 Hd~~~~~~~~d~v~--~l~~G~ 240 (279)
T 2ihy_A 221 HFIEEITANFSKIL--LLKDGQ 240 (279)
T ss_dssp SCGGGCCTTCCEEE--EEETTE
T ss_pred cCHHHHHHhCCEEE--EEECCE
Confidence 997665 6899985 456664
No 50
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.37 E-value=3e-13 Score=147.98 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=70.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+.+||||||||++||++|+.. |++++||||+++||+..+..+.++|+++.++ .+..+|+|||+
T Consensus 141 r~~~~LSGGq~QRvalArAL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-----------~g~tvi~vTHd 205 (355)
T 1z47_A 141 RFPHELSGGQQQRVALARALAPR----PQVLLFDEPFAAIDTQIRRELRTFVRQVHDE-----------MGVTSVFVTHD 205 (355)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESTTCCSSHHHHHHHHHHHHHHHHH-----------HTCEEEEECSC
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-----------cCCEEEEECCC
Confidence 56789999999999999999998 9999999999999999999999999998421 25679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+.+||++ +.|.+|+
T Consensus 206 ~~~a~~~adri--~vl~~G~ 223 (355)
T 1z47_A 206 QEEALEVADRV--LVLHEGN 223 (355)
T ss_dssp HHHHHHHCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 55 55689999 4566664
No 51
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.37 E-value=9.2e-12 Score=140.29 Aligned_cols=96 Identities=28% Similarity=0.384 Sum_probs=78.3
Q ss_pred cceeecCCCCcccccccCchhhHHHHHHHHHHhhcc--cCC-CCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCC
Q 036401 1043 IKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHS--YKP-SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQD 1119 (1154)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~--~~p-~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~ 1119 (1154)
+.+...+++. ..++..|||||+++++||+.+|+.. +.+ ||++||||||++||+..+..+.++|..+
T Consensus 265 ~~~~~~~~~~-~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---------- 333 (371)
T 3auy_A 265 FEVRVHAPNG-VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV---------- 333 (371)
T ss_dssp CCEEEEETTE-EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC----------
T ss_pred eeEEEEcCCC-ccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh----------
Confidence 4444433332 2467789999999999988777644 567 9999999999999999999999999998
Q ss_pred CCCCCCeeEEEEEechhHHHhccceEEEeecCC
Q 036401 1120 ADEGNGFQSIVISLKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1120 a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
. .+.|+|+|||++.+...||+++-|.+.+|
T Consensus 334 --~-~~~~vi~~th~~~~~~~~d~~~~l~k~~~ 363 (371)
T 3auy_A 334 --K-SIPQMIIITHHRELEDVADVIINVKKDGN 363 (371)
T ss_dssp --C-SCSEEEEEESCGGGGGGCSEEEEEEESSS
T ss_pred --c-cCCeEEEEEChHHHHhhCCEEEEEEecCC
Confidence 3 35699999999888889999998887765
No 52
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.37 E-value=3.8e-13 Score=148.04 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=70.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+.+||||||||++||++|+.. |++++||||+++||+..+..+.++|+++.++ .+..+|+|||+
T Consensus 136 ~~~~~LSGGq~QRvalAraL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-----------~g~tvi~vTHd 200 (353)
T 1oxx_K 136 HFPRELSGAQQQRVALARALVKD----PSLLLLDEPFSNLDARMRDSARALVKEVQSR-----------LGVTLLVVSHD 200 (353)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESTTTTSCGGGHHHHHHHHHHHHHH-----------HCCEEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHHHHh-----------cCCEEEEEeCC
Confidence 56789999999999999999998 9999999999999999999999999998321 25679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+.+||++ +.|++|+
T Consensus 201 ~~~~~~~adri--~vl~~G~ 218 (353)
T 1oxx_K 201 PADIFAIADRV--GVLVKGK 218 (353)
T ss_dssp HHHHHHHCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 55 55789999 5566664
No 53
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.37 E-value=3.8e-13 Score=147.66 Aligned_cols=82 Identities=22% Similarity=0.239 Sum_probs=71.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+.+||||||||++||++|+.. |++++||||+++||+..+..+.++|+++.++ .+..+|+|||+
T Consensus 129 r~~~~LSgGq~QRvalArAL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-----------~g~tvi~vTHd 193 (359)
T 2yyz_A 129 RKPTQLSGGQQQRVALARALVKQ----PKVLLFDEPLSNLDANLRMIMRAEIKHLQQE-----------LGITSVYVTHD 193 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTTC----CSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-----------HCCEEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHHh-----------cCCEEEEEcCC
Confidence 56889999999999999999998 9999999999999999999999999998421 25679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+..||++ +.|++|+
T Consensus 194 ~~~~~~~adri--~vl~~G~ 211 (359)
T 2yyz_A 194 QAEAMTMASRI--AVFNQGK 211 (359)
T ss_dssp HHHHHHHCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 55 55799999 5567764
No 54
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.36 E-value=7.7e-13 Score=139.61 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=68.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++ . . .+|+|||+
T Consensus 124 ~~~~~LSgGqkqRv~lAraL~~~----p~lllLDEPts~LD~~~~~~l~~~L~~~------------~-~--tviivtHd 184 (263)
T 2pjz_A 124 RKLYKLSAGQSVLVRTSLALASQ----PEIVGLDEPFENVDAARRHVISRYIKEY------------G-K--EGILVTHE 184 (263)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTC----CSEEEEECTTTTCCHHHHHHHHHHHHHS------------C-S--EEEEEESC
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEECCccccCHHHHHHHHHHHHHh------------c-C--cEEEEEcC
Confidence 56789999999999999999998 9999999999999999999999999998 3 2 79999999
Q ss_pred hhHH-Hhcc-ceEEEeecCCC
Q 036401 1135 DSFY-DKAE-ALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d-~~~GV~~~~~~ 1153 (1154)
...+ ..|| +++ .+++|+
T Consensus 185 ~~~~~~~~d~~i~--~l~~G~ 203 (263)
T 2pjz_A 185 LDMLNLYKEYKAY--FLVGNR 203 (263)
T ss_dssp GGGGGGCTTSEEE--EEETTE
T ss_pred HHHHHHhcCceEE--EEECCE
Confidence 7665 6899 884 455553
No 55
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.36 E-value=5.7e-13 Score=138.37 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=68.3
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHH-HhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFI-RSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l-~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+..||||||++++||++|+.. |++++|||||++||+.++..+.+++ ..+ . .+..+|+|||+
T Consensus 127 ~~~~LSgGqkqrv~lAral~~~----p~lllLDEPts~LD~~~~~~i~~~l~~~~------------~-~~~tvi~vtH~ 189 (229)
T 2pze_A 127 GGITLSGGQRARISLARAVYKD----ADLYLLDSPFGYLDVLTEKEIFESCVCKL------------M-ANKTRILVTSK 189 (229)
T ss_dssp TCTTSCHHHHHHHHHHHHHHSC----CSEEEEESTTTTSCHHHHHHHHHHCCCCC------------T-TTSEEEEECCC
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEECcccCCCHHHHHHHHHHHHHHh------------h-CCCEEEEEcCC
Confidence 4679999999999999999988 9999999999999999999999974 566 2 36789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+++|+
T Consensus 190 ~~~~~~~d~v~--~l~~G~ 206 (229)
T 2pze_A 190 MEHLKKADKIL--ILHEGS 206 (229)
T ss_dssp HHHHHHCSEEE--EEETTE
T ss_pred hHHHHhCCEEE--EEECCE
Confidence 88887899985 455553
No 56
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.36 E-value=4.4e-13 Score=147.99 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=71.6
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+.+||||||||++||++|+.. |++++||||+++||+..+..+..+|+++.++ .+..+|+|||
T Consensus 136 ~r~~~~LSGGq~QRvalArAL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-----------~g~tvi~vTH 200 (372)
T 1v43_A 136 NRYPAQLSGGQRQRVAVARAIVVE----PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK-----------LKVTTIYVTH 200 (372)
T ss_dssp TSCTTTCCSSCHHHHHHHHHHTTC----CSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-----------HTCEEEEEES
T ss_pred cCChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-----------CCCEEEEEeC
Confidence 356889999999999999999998 9999999999999999999999999998421 2567999999
Q ss_pred chh-HHHhccceEEEeecCCC
Q 036401 1134 KDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
+.. .+.+||++ +.|++|+
T Consensus 201 d~~~a~~~adri--~vl~~G~ 219 (372)
T 1v43_A 201 DQVEAMTMGDRI--AVMNRGQ 219 (372)
T ss_dssp CHHHHHHHCSEE--EEEETTE
T ss_pred CHHHHHHhCCEE--EEEECCE
Confidence 954 55799999 5567764
No 57
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.35 E-value=5.3e-13 Score=147.79 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=70.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+.+||||||||++||++|+.. |++++||||+++||+..+..+..+|+++.++ .+..+|+|||+
T Consensus 135 r~~~~LSGGq~QRvalArAL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-----------~g~tvi~vTHd 199 (372)
T 1g29_1 135 RKPRELSGGQRQRVALGRAIVRK----PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ-----------LGVTTIYVTHD 199 (372)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHTC----CSEEEEECTTTTSCHHHHHHHHHHHHHHHHH-----------HTCEEEEEESC
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEECCCCccCCHHHHHHHHHHHHHHHHh-----------cCCEEEEECCC
Confidence 56789999999999999999999 9999999999999999999999999998421 25679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+.+||++ +.|++|+
T Consensus 200 ~~~a~~~adri--~vl~~G~ 217 (372)
T 1g29_1 200 QVEAMTMGDRI--AVMNRGV 217 (372)
T ss_dssp HHHHHHHCSEE--EEEETTE
T ss_pred HHHHHHhCCEE--EEEeCCE
Confidence 55 55699998 4567764
No 58
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=99.35 E-value=2.9e-12 Score=132.59 Aligned_cols=96 Identities=31% Similarity=0.492 Sum_probs=82.7
Q ss_pred hcCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH--------------------------------
Q 036401 515 LFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK-------------------------------- 562 (1154)
Q Consensus 515 ~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~-------------------------------- 562 (1154)
.++|++|+|++++++ +++|+.||++++|.++++|||++..++..|+.
T Consensus 40 ~~~g~~g~l~~li~v-~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~~~~~~~~~~~~~~ 118 (213)
T 1gxl_A 40 RFPGLVDVVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENER 118 (213)
T ss_dssp SCTTEEEEGGGTCBC-CHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCCCCCCTTGGGST
T ss_pred hhCCCceehhheeee-CHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcCCCCccchhhhcCC
Confidence 368999999999999 68999999999999999999998766544331
Q ss_pred ------------------HHHHHhCCeEecCChHHHHhhhc-cCCceeEEeeCCeEeecCceeeccCC
Q 036401 563 ------------------AVLFAVGNTLVCDGLDEAKVLSW-SGERFRVVTVDGILLTKAGTMTGGTT 611 (1154)
Q Consensus 563 ------------------ai~~~lg~~lvve~~~~A~~i~~-~~~~~~~Vtl~G~~~~~~G~~tgg~~ 611 (1154)
++.++||+++||+|++.|..+.+ .+++.++||++|+++.++|+|+||+.
T Consensus 119 g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~ 186 (213)
T 1gxl_A 119 GFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 186 (213)
T ss_dssp TEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCC
T ss_pred CcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCeEEcCCceEECCCC
Confidence 56788999999999999999876 34567999999999999999999975
No 59
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.34 E-value=2.4e-13 Score=138.56 Aligned_cols=75 Identities=23% Similarity=0.203 Sum_probs=66.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 129 ~~~~~LSgGqkqrv~laraL~~~----p~lllLDEPts~LD~~~~~~l~~~l~~~~------------~~g~tiiivtHd 192 (214)
T 1sgw_A 129 KKLGELSQGTIRRVQLASTLLVN----AEIYVLDDPVVAIDEDSKHKVLKSILEIL------------KEKGIVIISSRE 192 (214)
T ss_dssp SBGGGSCHHHHHHHHHHHHTTSC----CSEEEEESTTTTSCTTTHHHHHHHHHHHH------------HHHSEEEEEESS
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEECCCcCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 45789999999999999999988 99999999999999999999999999983 235679999999
Q ss_pred hhHHH-hccceE
Q 036401 1135 DSFYD-KAEALV 1145 (1154)
Q Consensus 1135 ~~~~~-~~d~~~ 1145 (1154)
...+. .||+++
T Consensus 193 ~~~~~~~~d~v~ 204 (214)
T 1sgw_A 193 ELSYCDVNENLH 204 (214)
T ss_dssp CCTTSSEEEEGG
T ss_pred HHHHHHhCCEEE
Confidence 76654 788875
No 60
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.30 E-value=1.6e-12 Score=139.20 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=67.4
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHH-HhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFI-RSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l-~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+..||||||++++||++|+.. |++++|||||++||+.++..+.+++ ..+ . .+..+|+|||+
T Consensus 156 ~~~~LSgGq~QRv~lAraL~~~----p~lllLDEPts~LD~~~~~~i~~~ll~~~------------~-~~~tviivtHd 218 (290)
T 2bbs_A 156 GGITLSGGQRARISLARAVYKD----ADLYLLDSPFGYLDVLTEKEIFESCVCKL------------M-ANKTRILVTSK 218 (290)
T ss_dssp --CCCCHHHHHHHHHHHHHHSC----CSEEEEESTTTTCCHHHHHHHHHHCCCCC------------T-TTSEEEEECCC
T ss_pred ccCcCCHHHHHHHHHHHHHHCC----CCEEEEECCcccCCHHHHHHHHHHHHHHh------------h-CCCEEEEEecC
Confidence 4679999999999999999988 9999999999999999999999974 555 2 46789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 219 ~~~~~~~d~i~--~l~~G~ 235 (290)
T 2bbs_A 219 MEHLKKADKIL--ILHEGS 235 (290)
T ss_dssp HHHHHHSSEEE--EEETTE
T ss_pred HHHHHcCCEEE--EEECCe
Confidence 88888899985 456664
No 61
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.30 E-value=2.4e-12 Score=143.98 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=73.2
Q ss_pred ccccccCchhhHHHHHHHHHHhhcc--cCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHS--YKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~--~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
.+++..|||||+++++||++|++.. ..+||++||||||++||+..+..+.++|..+. ..+.++|+|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~------------~~g~tvi~i 341 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE------------RLNKVIVFI 341 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG------------GSSSEEEEE
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH------------hCCCEEEEE
Confidence 3678899999999999999998521 24599999999999999999999999999993 346789999
Q ss_pred EechhHHHhccceEEEeecCCC
Q 036401 1132 SLKDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
||+...+..||+++ .+.+|+
T Consensus 342 tH~~~~~~~~d~~~--~l~~G~ 361 (365)
T 3qf7_A 342 THDREFSEAFDRKL--RITGGV 361 (365)
T ss_dssp ESCHHHHTTCSCEE--EEETTE
T ss_pred ecchHHHHhCCEEE--EEECCE
Confidence 99998888999995 455664
No 62
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=143.84 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=70.0
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|+.. |++++||||+++||+..+..+...|+.+ . .+..+|+|||+.+
T Consensus 153 g~~LSGGqrQRvalARAL~~~----P~lLLLDEPts~LD~~~~~~l~~~l~~~------------~-~~~tvi~vtHd~e 215 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSK----AKILLLDEPSAHLDPVTYQIIRRTLKQA------------F-ADCTVILCEARIE 215 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTT----CCEEEEESHHHHSCHHHHHHHHHHHHTT------------T-TTSCEEEECSSSG
T ss_pred cccCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHH------------h-CCCEEEEEEcCHH
Confidence 456999999999999999998 9999999999999999999999999987 2 4577999999988
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||++ +.|++|+
T Consensus 216 ~~~~aDri--~vl~~G~ 230 (390)
T 3gd7_A 216 AMLECDQF--LVIEENK 230 (390)
T ss_dssp GGTTCSEE--EEEETTE
T ss_pred HHHhCCEE--EEEECCE
Confidence 88899999 5567765
No 63
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.21 E-value=1.5e-11 Score=146.95 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=72.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||||||||++||++|+.. ||++||||||++||+.+...+.+.|..+ . .+..+|+|||+
T Consensus 475 ~~~~~LSgGqrQrv~lARal~~~----p~illlDEpts~LD~~~~~~i~~~l~~~------------~-~~~tvi~itH~ 537 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALVKK----PKVLILDDCTSSVDPITEKRILDGLKRY------------T-KGCTTFIITQK 537 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHTC----CSEEEEESCCTTSCHHHHHHHHHHHHHH------------S-TTCEEEEEESC
T ss_pred CCCCCcCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHh------------C-CCCEEEEEecC
Confidence 35679999999999999999988 9999999999999999999999999998 3 57889999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
..++..||++ +.+++|+
T Consensus 538 l~~~~~~d~i--~vl~~G~ 554 (587)
T 3qf4_A 538 IPTALLADKI--LVLHEGK 554 (587)
T ss_dssp HHHHTTSSEE--EEEETTE
T ss_pred hHHHHhCCEE--EEEECCE
Confidence 9999999999 4566664
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.19 E-value=1.6e-11 Score=143.56 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=70.5
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||||+++||++|+.. |+++||||||++||+.++..+.++|+++.+ ..+..+|+|||
T Consensus 380 ~~~~~~LSGGq~QRv~iAraL~~~----p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~-----------~~g~tvi~vsH 444 (538)
T 3ozx_A 380 ESNVNDLSGGELQKLYIAATLAKE----ADLYVLDQPSSYLDVEERYIVAKAIKRVTR-----------ERKAVTFIIDH 444 (538)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHSC----CSEEEEESTTTTCCHHHHHHHHHHHHHHHH-----------HTTCEEEEECS
T ss_pred cCChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEeC
Confidence 467899999999999999999988 999999999999999999999999999832 13567999999
Q ss_pred chhHHH-hccceEEEee
Q 036401 1134 KDSFYD-KAEALVGVYR 1149 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~~ 1149 (1154)
+...+. .||+++-+.-
T Consensus 445 dl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 445 DLSIHDYIADRIIVFKG 461 (538)
T ss_dssp CHHHHHHHCSEEEEEEE
T ss_pred CHHHHHHhCCEEEEEeC
Confidence 976665 8999975543
No 65
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.19 E-value=1.8e-11 Score=146.51 Aligned_cols=80 Identities=24% Similarity=0.344 Sum_probs=71.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.....||||||||++||++|+.. ||+++|||||++||+.+...+.+.|.++ . .+..+|+|||+
T Consensus 476 ~~~~~LSgGq~qr~~iAral~~~----p~illlDEpts~LD~~~~~~i~~~l~~~------------~-~~~tvi~itH~ 538 (582)
T 3b5x_A 476 ENGTSLSGGQRQRVAIARALLRD----APVLILDEATSALDTESERAIQAALDEL------------Q-KNKTVLVIAHR 538 (582)
T ss_pred CCCCcCCHHHHHHHHHHHHHHcC----CCEEEEECccccCCHHHHHHHHHHHHHH------------c-CCCEEEEEecC
Confidence 34679999999999999999988 9999999999999999999999999998 3 46789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
..++..||++ +.+++|+
T Consensus 539 ~~~~~~~d~i--~~l~~G~ 555 (582)
T 3b5x_A 539 LSTIEQADEI--LVVDEGE 555 (582)
T ss_pred HHHHHhCCEE--EEEECCE
Confidence 9998999999 4566664
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.3e-11 Score=145.76 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=70.8
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..|||||||+++||.+|+.. |++++|||||++||+.++..+.++|+++.. ..+..+|+|||
T Consensus 462 ~~~~~~LSGGqkQRv~iAraL~~~----p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~-----------~~g~tviivtH 526 (608)
T 3j16_B 462 DQEVQHLSGGELQRVAIVLALGIP----ADIYLIDEPSAYLDSEQRIICSKVIRRFIL-----------HNKKTAFIVEH 526 (608)
T ss_dssp SSBSSSCCHHHHHHHHHHHHTTSC----CSEEEECCTTTTCCHHHHHHHHHHHHHHHH-----------HHTCEEEEECS
T ss_pred cCChhhCCHHHHHHHHHHHHHHhC----CCEEEEECCCCCCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEeC
Confidence 367889999999999999999988 999999999999999999999999999831 13567999999
Q ss_pred chhHH-HhccceEEEeecCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSD 1152 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~ 1152 (1154)
+...+ ..||+++-+.-.+|
T Consensus 527 dl~~~~~~aDrvivl~~~~g 546 (608)
T 3j16_B 527 DFIMATYLADKVIVFEGIPS 546 (608)
T ss_dssp CHHHHHHHCSEEEECEEETT
T ss_pred CHHHHHHhCCEEEEEeCCCC
Confidence 97665 58999975443334
No 67
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.18 E-value=1.8e-11 Score=146.14 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=71.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.....||||||||++||++|+.. ||+++|||||++||+.+...+.+.|..+ . .+..+|+|||+
T Consensus 473 ~~g~~LSgGq~Qrv~lAral~~~----p~illlDEpts~LD~~~~~~i~~~l~~~------------~-~~~t~i~itH~ 535 (578)
T 4a82_A 473 ERGVKLSGGQKQRLSIARIFLNN----PPILILDEATSALDLESESIIQEALDVL------------S-KDRTTLIVAHR 535 (578)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHC----CSEEEEESTTTTCCHHHHHHHHHHHHHH------------T-TTSEEEEECSS
T ss_pred cCCCcCCHHHHHHHHHHHHHHcC----CCEEEEECccccCCHHHHHHHHHHHHHH------------c-CCCEEEEEecC
Confidence 34679999999999999999998 9999999999999999999999999998 3 46789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
..++..||++ +.+++|+
T Consensus 536 l~~~~~~d~i--~~l~~G~ 552 (578)
T 4a82_A 536 LSTITHADKI--VVIENGH 552 (578)
T ss_dssp GGGTTTCSEE--EEEETTE
T ss_pred HHHHHcCCEE--EEEECCE
Confidence 9999999999 4566664
No 68
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.17 E-value=2.3e-11 Score=144.17 Aligned_cols=79 Identities=28% Similarity=0.319 Sum_probs=70.1
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+.+..|||||||+++||.+|+.. |+++||||||++||+.++..+.++|+++. ..+..+|+||
T Consensus 222 ~~~~~~~LSGGekQRvaIAraL~~~----P~lLlLDEPTs~LD~~~~~~l~~~L~~l~------------~~g~tvIivs 285 (607)
T 3bk7_A 222 LDRELHQLSGGELQRVAIAAALLRK----AHFYFFDEPSSYLDIRQRLKVARVIRRLA------------NEGKAVLVVE 285 (607)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHHSC----CSEEEEECTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEEC
T ss_pred hCCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHHHHHHHH------------hcCCEEEEEe
Confidence 4577899999999999999999988 99999999999999999999999999994 2366799999
Q ss_pred echhHH-HhccceEEE
Q 036401 1133 LKDSFY-DKAEALVGV 1147 (1154)
Q Consensus 1133 ~~~~~~-~~~d~~~GV 1147 (1154)
|+...+ ..||+++-+
T Consensus 286 Hdl~~~~~~adri~vl 301 (607)
T 3bk7_A 286 HDLAVLDYLSDVIHVV 301 (607)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred cChHHHHhhCCEEEEE
Confidence 997665 479998644
No 69
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.17 E-value=1.8e-11 Score=146.49 Aligned_cols=79 Identities=27% Similarity=0.338 Sum_probs=71.0
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||||++||++|+.. ||+++|||||++||+.+...+.+.|.++ . .+..+|+|||+.
T Consensus 477 ~~~~LSgGq~qrl~iAral~~~----p~illlDEpts~LD~~~~~~i~~~l~~~------------~-~~~tvi~itH~~ 539 (582)
T 3b60_A 477 NGVLLSGGQRQRIAIARALLRD----SPILILDEATSALDTESERAIQAALDEL------------Q-KNRTSLVIAHRL 539 (582)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHC----CSEEEEETTTSSCCHHHHHHHHHHHHHH------------H-TTSEEEEECSCG
T ss_pred CCCCCCHHHHHHHHHHHHHHhC----CCEEEEECccccCCHHHHHHHHHHHHHH------------h-CCCEEEEEeccH
Confidence 4679999999999999999988 9999999999999999999999999998 2 367899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||+++ .+++|+
T Consensus 540 ~~~~~~d~i~--~l~~G~ 555 (582)
T 3b60_A 540 STIEQADEIV--VVEDGI 555 (582)
T ss_dssp GGTTTCSEEE--EEETTE
T ss_pred HHHHhCCEEE--EEECCE
Confidence 9888999994 456664
No 70
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.17 E-value=2.2e-11 Score=146.12 Aligned_cols=79 Identities=27% Similarity=0.269 Sum_probs=70.8
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||||++||++|+.. ||+++|||||++||+.+...+.+.|.++ . .+..+|+|||+.
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~----p~illlDEpts~LD~~~~~~i~~~l~~~------------~-~~~tvi~itH~~ 542 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKN----PKILLLDEATSALDAENEYLVQEALDRL------------M-DGRTVLVIAHRL 542 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHC----CSEEEEECCCSSCCHHHHHHHHHHHHHH------------H-TTSEEEEECCCH
T ss_pred CCCcCCHHHHHHHHHHHHHHcC----CCEEEEECcccCCCHHHHHHHHHHHHHH------------h-cCCEEEEEecCH
Confidence 4579999999999999999998 9999999999999999999999999998 2 367899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||+++ .+++|+
T Consensus 543 ~~~~~~d~i~--~l~~G~ 558 (595)
T 2yl4_A 543 STIKNANMVA--VLDQGK 558 (595)
T ss_dssp HHHHHSSEEE--EEETTE
T ss_pred HHHHcCCEEE--EEECCE
Confidence 9888999994 456664
No 71
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.17 E-value=2.2e-11 Score=142.92 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=69.8
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+++..|||||||+++||.+|+.. |+++||||||++||+.++..+.++|+.+. ..+..+|+||
T Consensus 152 ~~~~~~~LSgGekQRv~iAraL~~~----P~lLlLDEPTs~LD~~~~~~l~~~L~~l~------------~~g~tvi~vs 215 (538)
T 1yqt_A 152 LEREIQHLSGGELQRVAIAAALLRN----ATFYFFDEPSSYLDIRQRLNAARAIRRLS------------EEGKSVLVVE 215 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSC----CSEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEEC
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHHHHHHHH------------hcCCEEEEEe
Confidence 4577999999999999999999988 99999999999999999999999999994 2466799999
Q ss_pred echhHH-HhccceEEE
Q 036401 1133 LKDSFY-DKAEALVGV 1147 (1154)
Q Consensus 1133 ~~~~~~-~~~d~~~GV 1147 (1154)
|+...+ ..||+++-+
T Consensus 216 Hd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 216 HDLAVLDYLSDIIHVV 231 (538)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHhCCEEEEE
Confidence 996665 489998643
No 72
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.16 E-value=2.1e-11 Score=146.14 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=71.6
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||||++||++|+.. ||+++|||||++||+.+...+.+.|.++ . .+..+|+|||+.
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~----p~illlDEpts~LD~~~~~~i~~~l~~~------------~-~~~t~i~itH~l 550 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLAN----PKILILDEATSNVDTKTEKSIQAAMWKL------------M-EGKTSIIIAHRL 550 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTC----CSEEEECCCCTTCCHHHHHHHHHHHHHH------------H-TTSEEEEESCCT
T ss_pred CCCCCCHHHHHHHHHHHHHhcC----CCEEEEECCccCCCHHHHHHHHHHHHHH------------c-CCCEEEEEecCH
Confidence 4578999999999999999988 9999999999999999999999999998 2 467899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||++ +.+++|+
T Consensus 551 ~~~~~~d~i--~~l~~G~ 566 (598)
T 3qf4_B 551 NTIKNADLI--IVLRDGE 566 (598)
T ss_dssp THHHHCSEE--EEECSSS
T ss_pred HHHHcCCEE--EEEECCE
Confidence 999999999 5567775
No 73
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.16 E-value=4.5e-11 Score=141.18 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=70.3
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+.+..|||||||+++||.+|+.. |+++||||||++||+..+..+.++|+++. ..+..+|+||
T Consensus 215 ~~~~~~~LSgGe~Qrv~iAraL~~~----p~llllDEPts~LD~~~~~~l~~~l~~l~------------~~g~tvi~vt 278 (608)
T 3j16_B 215 LKRDIEKLSGGELQRFAIGMSCVQE----ADVYMFDEPSSYLDVKQRLNAAQIIRSLL------------APTKYVICVE 278 (608)
T ss_dssp GGSCTTTCCHHHHHHHHHHHHHHSC----CSEEEEECTTTTCCHHHHHHHHHHHHGGG------------TTTCEEEEEC
T ss_pred hCCChHHCCHHHHHHHHHHHHHHhC----CCEEEEECcccCCCHHHHHHHHHHHHHHH------------hCCCEEEEEe
Confidence 4577899999999999999999998 99999999999999999999999999994 3466799999
Q ss_pred echhHH-HhccceEEEe
Q 036401 1133 LKDSFY-DKAEALVGVY 1148 (1154)
Q Consensus 1133 ~~~~~~-~~~d~~~GV~ 1148 (1154)
|+...+ ..||+++-++
T Consensus 279 Hdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 279 HDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp SCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHhCCEEEEEe
Confidence 996555 5899996543
No 74
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=99.15 E-value=4.2e-11 Score=120.53 Aligned_cols=96 Identities=31% Similarity=0.498 Sum_probs=82.7
Q ss_pred hcCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH--------------------------------
Q 036401 515 LFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK-------------------------------- 562 (1154)
Q Consensus 515 ~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~-------------------------------- 562 (1154)
.++|++|+|.+++++ +++|+.||++++|..+++|||++..++..|+.
T Consensus 28 ~~~g~~g~l~~li~v-~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~~~~~~~~~~~ 106 (186)
T 1gxj_A 28 RFPGLVDVVSNLIEV-DEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENER 106 (186)
T ss_dssp GCTTEEEEHHHHCBC-CGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCCCCCTTGGGST
T ss_pred hhCCcceehhheecc-CHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCcccchhcccCC
Confidence 368999999999998 58999999999999999999998766544331
Q ss_pred ------------------HHHHHhCCeEecCChHHHHhhhcc-CCceeEEeeCCeEeecCceeeccCC
Q 036401 563 ------------------AVLFAVGNTLVCDGLDEAKVLSWS-GERFRVVTVDGILLTKAGTMTGGTT 611 (1154)
Q Consensus 563 ------------------ai~~~lg~~lvve~~~~A~~i~~~-~~~~~~Vtl~G~~~~~~G~~tgg~~ 611 (1154)
++.++||+++||+|++.|..+.+. ++++++||++|+++.++|+|+||+.
T Consensus 107 g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 107 GFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp TEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred CchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeCCCeEEcCCEEEECCCC
Confidence 567889999999999999988763 5667899999999999999999864
No 75
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.14 E-value=3.5e-11 Score=146.74 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=69.9
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCC--eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSP--FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~--~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
..+++..||||||||++||.+|+.. |+ +++|||||++||+.++..+.++|+++. ..+..+|+
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~----p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~------------~~g~tvi~ 259 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSR----LTGVLYVLDEPSIGLHQRDNDRLIATLKSMR------------DLGNTLIV 259 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTC----CCSCEEEEECTTTTCCGGGHHHHHHHHHHHH------------HTTCEEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhC----CCCCEEEEECCccCCCHHHHHHHHHHHHHHH------------HcCCEEEE
Confidence 3477899999999999999999987 66 999999999999999999999999994 24667999
Q ss_pred EEechhHHHhccceEE
Q 036401 1131 ISLKDSFYDKAEALVG 1146 (1154)
Q Consensus 1131 it~~~~~~~~~d~~~G 1146 (1154)
|||+...+..||+++-
T Consensus 260 vtHd~~~~~~~d~ii~ 275 (670)
T 3ux8_A 260 VEHDEDTMLAADYLID 275 (670)
T ss_dssp ECCCHHHHHHCSEEEE
T ss_pred EeCCHHHHhhCCEEEE
Confidence 9999888889999963
No 76
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.13 E-value=4.7e-11 Score=141.45 Aligned_cols=80 Identities=28% Similarity=0.277 Sum_probs=69.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|+.+.. ..+..+|+|||
T Consensus 466 ~~~~~~LSGGe~QRv~iAraL~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-----------~~g~tvi~vsH 530 (607)
T 3bk7_A 466 DRNVEDLSGGELQRVAIAATLLRD----ADIYLLDEPSAYLDVEQRLAVSRAIRHLME-----------KNEKTALVVEH 530 (607)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHTSC----CSEEEEECTTTTCCHHHHHHHHHHHHHHHH-----------HTTCEEEEECS
T ss_pred cCChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEeC
Confidence 356889999999999999999987 999999999999999999999999999831 13667999999
Q ss_pred chhHHH-hccceEEEe
Q 036401 1134 KDSFYD-KAEALVGVY 1148 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~ 1148 (1154)
+..++. .||+++-+.
T Consensus 531 d~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 531 DVLMIDYVSDRLIVFE 546 (607)
T ss_dssp CHHHHHHHCSEEEEEE
T ss_pred CHHHHHHhCCEEEEEc
Confidence 977665 899997654
No 77
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.13 E-value=7.1e-11 Score=138.03 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=68.4
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||||+++||.+|+.. |+++||||||++||+..+..+.++|+++ . .+..+|+|||
T Consensus 133 ~~~~~~LSgGe~Qrv~iA~aL~~~----p~illlDEPts~LD~~~~~~l~~~l~~l------------~-~g~tii~vsH 195 (538)
T 3ozx_A 133 NKDANILSGGGLQRLLVAASLLRE----ADVYIFDQPSSYLDVRERMNMAKAIREL------------L-KNKYVIVVDH 195 (538)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHSC----CSEEEEESTTTTCCHHHHHHHHHHHHHH------------C-TTSEEEEECS
T ss_pred cCChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHH------------h-CCCEEEEEEe
Confidence 467899999999999999999998 9999999999999999999999999999 3 3677999999
Q ss_pred chhHH-HhccceEEE
Q 036401 1134 KDSFY-DKAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV 1147 (1154)
+...+ ..||+++-.
T Consensus 196 dl~~~~~~~d~i~vl 210 (538)
T 3ozx_A 196 DLIVLDYLTDLIHII 210 (538)
T ss_dssp CHHHHHHHCSEEEEE
T ss_pred ChHHHHhhCCEEEEe
Confidence 96555 589988633
No 78
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.11 E-value=5e-11 Score=139.96 Aligned_cols=80 Identities=26% Similarity=0.265 Sum_probs=69.5
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||.+|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||
T Consensus 396 ~~~~~~LSGGe~qrv~lAraL~~~----p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~-----------~~g~tvi~vsH 460 (538)
T 1yqt_A 396 DREVNELSGGELQRVAIAATLLRD----ADIYLLDEPSAYLDVEQRLAVSRAIRHLME-----------KNEKTALVVEH 460 (538)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHTSC----CSEEEEECTTTTCCHHHHHHHHHHHHHHHH-----------HHTCEEEEECS
T ss_pred cCChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEeC
Confidence 367889999999999999999987 999999999999999999999999999831 13567999999
Q ss_pred chhHHH-hccceEEEe
Q 036401 1134 KDSFYD-KAEALVGVY 1148 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~ 1148 (1154)
+...+. .||+++-+.
T Consensus 461 d~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 461 DVLMIDYVSDRLMVFE 476 (538)
T ss_dssp CHHHHHHHCSEEEEEE
T ss_pred CHHHHHHhCCEEEEEe
Confidence 976664 899997554
No 79
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.10 E-value=6.1e-11 Score=144.67 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=68.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||||++||++|+.. ...|+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 539 ~~~~~LSgG~~qrv~iAraL~~~-p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~------------~~g~tvi~vtHd 605 (670)
T 3ux8_A 539 QPATTLSGGEAQRVKLAAELHRR-SNGRTLYILDEPTTGLHVDDIARLLDVLHRLV------------DNGDTVLVIEHN 605 (670)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHSC-CCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECCC
T ss_pred CCchhCCHHHHHHHHHHHHHhhC-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 56889999999999999999875 11246999999999999999999999999994 246679999999
Q ss_pred hhHHHhccceE
Q 036401 1135 DSFYDKAEALV 1145 (1154)
Q Consensus 1135 ~~~~~~~d~~~ 1145 (1154)
..++..||+++
T Consensus 606 ~~~~~~~d~i~ 616 (670)
T 3ux8_A 606 LDVIKTADYII 616 (670)
T ss_dssp HHHHTTCSEEE
T ss_pred HHHHHhCCEEE
Confidence 88888999995
No 80
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.09 E-value=1.1e-10 Score=143.05 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=69.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCC--eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSP--FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~--~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
+.+.+|||||+||++||.+|+.. |+ ++||||||++||+..+..+.++|+.+. ..+..+|+||
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~~----p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~------------~~G~TvivVt 523 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGSG----LTGVIYVLDEPTIGLHPRDTERLIKTLKKLR------------DLGNTVIVVE 523 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTT----CCSCEEEEECTTTTCCGGGHHHHHHHHHHTT------------TTTCEEEEEC
T ss_pred CCcccCCHHHHHHHHHHHHHhhC----CCCcEEEEECCccCCCHHHHHHHHHHHHHHH------------hcCCEEEEEe
Confidence 56889999999999999999976 54 999999999999999999999999993 3577899999
Q ss_pred echhHHHhccceEEE
Q 036401 1133 LKDSFYDKAEALVGV 1147 (1154)
Q Consensus 1133 ~~~~~~~~~d~~~GV 1147 (1154)
|+..++..||+++-+
T Consensus 524 Hd~~~~~~aD~ii~l 538 (916)
T 3pih_A 524 HDEEVIRNADHIIDI 538 (916)
T ss_dssp CCHHHHHTCSEEEEE
T ss_pred CCHHHHHhCCEEEEE
Confidence 999999899999644
No 81
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.09 E-value=1e-10 Score=141.63 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=69.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCC-CCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKP-SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p-~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
+.+..|||||+|+++||.+|+.. | |.+|||||||++||+..+..++++|+.|. ..+..+|+|||
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~~---~~~~llILDEPTagLdp~~~~~L~~~L~~Lr------------~~G~TVIvVeH 564 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGSR---LTGVLYVLDEPSIGLHQRDNDRLIATLKSMR------------DLGNTLIVVEH 564 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTC---CCSCEEEEECTTTTCCGGGHHHHHHHHHHHH------------TTTCEEEEECC
T ss_pred CccccCCHHHHHHHHHHHHHhhC---CCCCEEEEeCcccCCCHHHHHHHHHHHHHHH------------hCCCEEEEEec
Confidence 67889999999999999999865 2 48999999999999999999999999994 35677999999
Q ss_pred chhHHHhccceEE
Q 036401 1134 KDSFYDKAEALVG 1146 (1154)
Q Consensus 1134 ~~~~~~~~d~~~G 1146 (1154)
+..++..||+++-
T Consensus 565 dl~~i~~ADrIi~ 577 (972)
T 2r6f_A 565 DEDTMLAADYLID 577 (972)
T ss_dssp CHHHHHSCSEEEE
T ss_pred CHHHHHhCCEEEE
Confidence 9989999999953
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.06 E-value=1e-10 Score=143.21 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..|||||+||++||.+|+.. -.+|+++||||||+|||+..+..+.+.|..+. ..+..+|+|||+
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~-p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~------------~~G~TVIvI~Hd 867 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKR-DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV------------DRGNTVIVIEHN 867 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSC-CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECCC
T ss_pred CCccCCCHHHHHHHHHHHHHhhC-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 56789999999999999999854 12257999999999999999999999999994 246679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
..++..||+++-+
T Consensus 868 L~~i~~ADrIivL 880 (916)
T 3pih_A 868 LDVIKNADHIIDL 880 (916)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHHhCCEEEEe
Confidence 9999999999643
No 83
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.05 E-value=1.5e-10 Score=140.86 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCC-CCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKP-SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p-~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
+.+..|||||+|+++||.+|+.. | +++|||||||++||+..+..+.++|+.|. ..+..+|||||
T Consensus 517 r~~~tLSGGEkQRV~LA~aL~~~---~~~~llILDEPTagLdp~~~~~L~~~L~~Lr------------~~G~TVIvVeH 581 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLATQIGSG---LVGVLYVLDEPSIGLHQRDNRRLIETLTRLR------------DLGNTLIVVEH 581 (993)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTTC---CCSCEEEEECTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHhhC---CCCcEEEEeCcccCCCHHHHHHHHHHHHHHH------------HcCCEEEEECC
Confidence 56889999999999999999865 3 47999999999999999999999999994 34667999999
Q ss_pred chhHHHhccceEEE
Q 036401 1134 KDSFYDKAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV 1147 (1154)
+..++..||+++-+
T Consensus 582 dl~~i~~ADrIi~L 595 (993)
T 2ygr_A 582 DEDTIEHADWIVDI 595 (993)
T ss_dssp CHHHHHTCSEEEEE
T ss_pred CHHHHHhCCEEEEe
Confidence 99899999999533
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.04 E-value=1.8e-10 Score=140.84 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=68.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..||||||++++||++|+.. |+++||||||++||+.++..+.+.|.++ +..+|+|||+
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~----P~LLLLDEPT~gLD~~s~~~L~~~L~~~---------------g~tVIiISHD 957 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQR----PHLIVLDEPTNYLDRDSLGALSKALKEF---------------EGGVIIITHS 957 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTC----CSEEEEECGGGTCCHHHHHHHHHHHHSC---------------SSEEEEECSC
T ss_pred CCccccCHHHHHHHHHHHHHHhC----CCEEEEECCccCCCHHHHHHHHHHHHHh---------------CCEEEEEECC
Confidence 56889999999999999999987 9999999999999999999999999877 2369999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
.+.+ ..||++| .+.+|+
T Consensus 958 ~e~v~~l~DrVi--vL~~G~ 975 (986)
T 2iw3_A 958 AEFTKNLTEEVW--AVKDGR 975 (986)
T ss_dssp HHHHTTTCCEEE--CCBTTB
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 8776 4899995 456665
No 85
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.03 E-value=1.4e-10 Score=140.42 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=68.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..|||||+|+++||.+|+.. -..|+++||||||+|||+..+..+.++|..+. ..+..+|+|||+
T Consensus 841 ~~~~~LSGGekQRv~LAraL~~~-p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~------------~~G~TVIvisHd 907 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLAAELHRR-SNGRTLYILDEPTTGLHVDDIARLLDVLHRLV------------DNGDTVLVIEHN 907 (972)
T ss_dssp CCGGGCCHHHHHHHHHHHHHSSC-CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECCC
T ss_pred CchhhCCHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEcCC
Confidence 56789999999999999999864 11258999999999999999999999999994 246679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
...+..||+++-+
T Consensus 908 l~~i~~aDrIivL 920 (972)
T 2r6f_A 908 LDVIKTADYIIDL 920 (972)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHHhCCEEEEE
Confidence 8888899999543
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.03 E-value=2.3e-10 Score=139.96 Aligned_cols=79 Identities=29% Similarity=0.383 Sum_probs=68.2
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|... +..+|+|||
T Consensus 543 ~~~~~~LSGGqkQRvaLArAL~~~----P~lLLLDEPTs~LD~~~~~~l~~~L~~~---------------g~tvIivSH 603 (986)
T 2iw3_A 543 AMPISALSGGWKMKLALARAVLRN----ADILLLDEPTNHLDTVNVAWLVNYLNTC---------------GITSITISH 603 (986)
T ss_dssp HSBGGGCCHHHHHHHHHHHHHHTT----CSEEEEESTTTTCCHHHHHHHHHHHHHS---------------CSEEEEECS
T ss_pred cCCcccCCHHHHHHHHHHHHHhcC----CCEEEEECCccCCCHHHHHHHHHHHHhC---------------CCEEEEEEC
Confidence 467889999999999999999988 9999999999999999999999999862 356999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++- +++|+
T Consensus 604 dl~~l~~~adrii~--L~~G~ 622 (986)
T 2iw3_A 604 DSVFLDNVCEYIIN--YEGLK 622 (986)
T ss_dssp CHHHHHHHCSEEEE--EETTE
T ss_pred CHHHHHHhCCEEEE--EECCe
Confidence 97766 48999863 44553
No 87
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.01 E-value=1.8e-09 Score=118.86 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCC--CCCCCccc----------ceeec
Q 036401 981 KQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENE--DDPFLHGI----------KYTAM 1048 (1154)
Q Consensus 981 ~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~ 1048 (1154)
+.+...+..+-......-..++..++..+..+|..++ . ...+.+.+... .+.|...+ .++..
T Consensus 173 ~~~d~qla~~g~~i~~~R~~~~~~l~~~~~~~~~~~~-~-----~e~l~l~y~~~~~~~~~~~~L~~~r~~d~~~g~T~~ 246 (359)
T 2o5v_A 173 HVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLG-S-----RKTLALTLTESTSPETYAADLRGRRAEELARGSTVT 246 (359)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C-----CSCEEEEEECSSCTTTHHHHHHHTHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-----CCcEEEEEecCCCHHHHHHHHHHhHHHHHHcCCCCC
Confidence 3345555555555555666677777788888888874 1 11223322111 11111000 00111
Q ss_pred CCCC-------cccccc-cCchhhHHHHHHHHHHhhcc-----cCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCC
Q 036401 1049 PPTK-------RFRDME-QLSGGEKTVAALALLFSIHS-----YKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTR 1115 (1154)
Q Consensus 1049 ~~~~-------~~~~~~-~lSgGek~~~~la~~~a~~~-----~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~ 1115 (1154)
-|.+ ..+++. .|||||+++++||++||-.. ...||+++||||+++||+..+..+.++|..+
T Consensus 247 GPHRdDl~~~~~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~------ 320 (359)
T 2o5v_A 247 GPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV------ 320 (359)
T ss_dssp SGGGCEEEEEETTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS------
T ss_pred CCcccCCeeccCCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc------
Confidence 1111 135677 89999999999999999311 1459999999999999999999999999988
Q ss_pred CCCCCCCCCCeeEEEEEechhHHHhccceEEE
Q 036401 1116 GNQDADEGNGFQSIVISLKDSFYDKAEALVGV 1147 (1154)
Q Consensus 1116 ~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV 1147 (1154)
. ..||++||... .||+++-|
T Consensus 321 ------~---qt~i~~th~~~---~~~~i~~l 340 (359)
T 2o5v_A 321 ------P---QAIVTGTELAP---GAALTLRA 340 (359)
T ss_dssp ------S---EEEEEESSCCT---TCSEEEEE
T ss_pred ------C---cEEEEEEeccc---cCCEEEEE
Confidence 2 45778888433 88988655
No 88
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.00 E-value=3e-10 Score=147.92 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=71.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||+|||++|.-. ||++|||||||+||+.+-..+.+.|.++ . .+.++|+||||..
T Consensus 1215 G~~LSgGQrQriaiARAllr~----~~ILiLDEaTSaLD~~tE~~Iq~~l~~~------------~-~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRN----PKILLLDEATSALDTESEKVVQEALDRA------------R-EGRTCIVIAHRLN 1277 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSC----CSEEEEESCCCSTTSHHHHHHHHHHTTT------------S-SSSEEEEECSSSS
T ss_pred CcccCHHHHHHHHHHHHHHhC----CCEEEEeCccccCCHHHHHHHHHHHHHH------------c-CCCEEEEeccCHH
Confidence 358999999999999999766 9999999999999999999999999988 3 6889999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.|++|+
T Consensus 1278 Ti~~aD~I--~Vld~G~ 1292 (1321)
T 4f4c_A 1278 TVMNADCI--AVVSNGT 1292 (1321)
T ss_dssp TTTTCSEE--EEESSSS
T ss_pred HHHhCCEE--EEEECCE
Confidence 99999999 6688886
No 89
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.99 E-value=2.5e-10 Score=138.84 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=68.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..|||||+|+++||.+|+.. -..|+++||||||+|||+..+..+.++|..+. ..+..+|+|||+
T Consensus 859 ~~~~~LSGGekQRv~LAraL~~~-p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~------------~~G~TVIvisHd 925 (993)
T 2ygr_A 859 QPAPTLSGGEAQRVKLASELQKR-STGRTVYILDEPTTGLHFDDIRKLLNVINGLV------------DKGNTVIVIEHN 925 (993)
T ss_dssp CCGGGSCHHHHHHHHHHHHHSSC-CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECCC
T ss_pred CccccCCHHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEcCC
Confidence 46789999999999999999864 11258999999999999999999999999994 246679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
..++..||+++-+
T Consensus 926 l~~i~~aDrIivL 938 (993)
T 2ygr_A 926 LDVIKTSDWIIDL 938 (993)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHHhCCEEEEE
Confidence 8888899999644
No 90
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.99 E-value=3.9e-10 Score=136.85 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=69.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCC--CeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPS--PFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~--~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
+.+..|||||+|+++||.+|+.. | .+|||||||++||+..+..+.++|..|. ..+..+|+||
T Consensus 375 r~~~tLSGGe~QRV~LA~aL~~~----p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~------------~~G~TVIvVe 438 (842)
T 2vf7_A 375 RSTPTLSPGELQRLRLATQLYSN----LFGVVYVLDEPSAGLHPADTEALLSALENLK------------RGGNSLFVVE 438 (842)
T ss_dssp CBGGGSCHHHHHHHHHHHHTTTC----CCSCEEEEECTTTTCCGGGHHHHHHHHHHHH------------TTTCEEEEEC
T ss_pred CCcCcCCHHHHHHHHHHHHHhhC----CCCeEEEeeCccccCCHHHHHHHHHHHHHHH------------HcCCEEEEEc
Confidence 56889999999999999999976 4 5999999999999999999999999994 3567799999
Q ss_pred echhHHHhccceEEE
Q 036401 1133 LKDSFYDKAEALVGV 1147 (1154)
Q Consensus 1133 ~~~~~~~~~d~~~GV 1147 (1154)
|+..++..||+++-+
T Consensus 439 Hdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 439 HDLDVIRRADWLVDV 453 (842)
T ss_dssp CCHHHHTTCSEEEEE
T ss_pred CCHHHHHhCCEEEEe
Confidence 999899999999543
No 91
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.97 E-value=4.1e-06 Score=90.70 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036401 413 KNLEANLQQLSNREHELDA 431 (1154)
Q Consensus 413 ~~l~~~i~~~~~~~~~l~~ 431 (1154)
..+...+..+...+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~ 195 (284)
T 1c1g_A 177 ERAEERAELSEGKCAELEE 195 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 92
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.97 E-value=2.5e-10 Score=138.57 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=68.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..|||||+|+++||.+|+.. ..+|+++||||||++||+..+..+.++|..+. ..+..+|+|||+
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~-p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~------------~~G~tVIvisHd 792 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRS-GRGGTVYVLDEPTTGLHPADVERLQRQLVKLV------------DAGNTVIAVEHK 792 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSC-CSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH------------HTTCEEEEECCC
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEcCC
Confidence 56789999999999999988764 11279999999999999999999999999994 246679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
..++..||+++-+
T Consensus 793 l~~i~~aDrii~L 805 (842)
T 2vf7_A 793 MQVVAASDWVLDI 805 (842)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHHhCCEEEEE
Confidence 8888999999543
No 93
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.95 E-value=5.1e-10 Score=145.82 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=70.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||+++.-. ||++||||||++||+.+...+.+.|..+ . .+.++|+|||+..
T Consensus 552 G~~LSGGQkQRiaiARAl~~~----~~IliLDE~tSaLD~~te~~i~~~l~~~------------~-~~~T~iiiaHrls 614 (1321)
T 4f4c_A 552 GTQLSGGQKQRIAIARALVRN----PKILLLDEATSALDAESEGIVQQALDKA------------A-KGRTTIIIAHRLS 614 (1321)
T ss_dssp SCCCCHHHHHHHHHHHHHTTC----CSEEEEESTTTTSCTTTHHHHHHHHHHH------------H-TTSEEEEECSCTT
T ss_pred CCCCCHHHHHHHHHHHHHccC----CCEEEEecccccCCHHHHHHHHHHHHHH------------h-CCCEEEEEcccHH
Confidence 458999999999999999766 9999999999999999999999999998 2 6788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ |.|++|+
T Consensus 615 ~i~~aD~I--ivl~~G~ 629 (1321)
T 4f4c_A 615 TIRNADLI--ISCKNGQ 629 (1321)
T ss_dssp TTTTCSEE--EEEETTE
T ss_pred HHHhCCEE--EEeeCCe
Confidence 99999999 5567775
No 94
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.94 E-value=5.5e-10 Score=145.08 Aligned_cols=79 Identities=28% Similarity=0.331 Sum_probs=70.7
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||||++||++|+.. ||++||||||++||+.+...+.+.|..+ . .+..+|+|||+.
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~----p~iLiLDEpTs~lD~~~~~~i~~~l~~~------------~-~~~tvi~isH~l 1230 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQ----PHILLLDEATSALDTESEKVVQEALDKA------------R-EGRTCIVIAHRL 1230 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHC----CSSEEEESCSSSCCHHHHHHHHHHHHHH------------S-SSSCEEEECSCT
T ss_pred CCCccCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHh------------C-CCCEEEEEecCH
Confidence 3568999999999999999988 9999999999999999999999999987 2 467799999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||++ +.|++|+
T Consensus 1231 ~~i~~~dri--~vl~~G~ 1246 (1284)
T 3g5u_A 1231 STIQNADLI--VVIQNGK 1246 (1284)
T ss_dssp TGGGSCSEE--EEEETBE
T ss_pred HHHHcCCEE--EEEECCE
Confidence 999999999 4566664
No 95
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.93 E-value=7.5e-10 Score=143.85 Aligned_cols=79 Identities=29% Similarity=0.316 Sum_probs=71.5
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||||++||+++... ||++||||||++||+.+...+.+.|..+ . .+..+|+|||+.
T Consensus 523 ~g~~LSgGq~QriaiARal~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~------------~-~~~t~i~itH~l 585 (1284)
T 3g5u_A 523 RGAQLSGGQKQRIAIARALVRN----PKILLLDEATSALDTESEAVVQAALDKA------------R-EGRTTIVIAHRL 585 (1284)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHC----CSEEEEESTTCSSCHHHHHHHHHHHHHH------------H-TTSEEEEECSCH
T ss_pred CCCccCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHH------------c-CCCEEEEEecCH
Confidence 4669999999999999999988 9999999999999999999999999887 2 577899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||++ +.|++|+
T Consensus 586 ~~i~~~d~i--~vl~~G~ 601 (1284)
T 3g5u_A 586 STVRNADVI--AGFDGGV 601 (1284)
T ss_dssp HHHTTCSEE--EECSSSC
T ss_pred HHHHcCCEE--EEEECCE
Confidence 999999999 5577775
No 96
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.87 E-value=4.1e-09 Score=135.85 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=5.2
Q ss_pred HHHHHhcCCcc
Q 036401 127 NAKLRSLGILV 137 (1154)
Q Consensus 127 ~~~l~~~~i~~ 137 (1154)
..+|..++++.
T Consensus 753 ~~lL~~l~l~~ 763 (1184)
T 1i84_S 753 ILMIKALELDP 763 (1184)
T ss_dssp HHHHHTTTCCT
T ss_pred HHHHHHcCCCc
Confidence 33455555543
No 97
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.80 E-value=2.1e-09 Score=106.37 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=60.7
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhH----------------HHHHHHHHhcccCCCCCCCCCCC
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNV----------------AKVAGFIRSKSCEGTRGNQDADE 1122 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~----------------~~~~~~l~~~~~~~~~~~~~a~~ 1122 (1154)
..|||+|++++||.+++.. |++++||||+++||+.|. ..+.++|..+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~----p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~----------- 147 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCF----PVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR----------- 147 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCE----EEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-----------
T ss_pred CCHHHHHHHHHHHHHcCCc----EEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-----------
Confidence 4599999999999999988 999999999999999954 788888888743
Q ss_pred CCCeeEEEEEechhHHHhccceE
Q 036401 1123 GNGFQSIVISLKDSFYDKAEALV 1145 (1154)
Q Consensus 1123 ~~~~q~i~it~~~~~~~~~d~~~ 1145 (1154)
.+..+|+|||+...+..+++++
T Consensus 148 -~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 148 -EGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp -HTCSEEEEECSHHHHHHEEEEE
T ss_pred -cCCcEEEEeCCHHHhhhhhhcc
Confidence 3555999999988888777764
No 98
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.74 E-value=5.5e-08 Score=125.46 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=8.6
Q ss_pred ceeEEEEecceecc
Q 036401 9 KIHRLELENFKSYK 22 (1154)
Q Consensus 9 ~i~~l~l~nFks~~ 22 (1154)
.|-=|.|.||=+|.
T Consensus 459 ~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 459 FLGILDIAGFEIFE 472 (1184)
T ss_dssp EEEEEECCCCCCCS
T ss_pred eEEEeecCCcCCCC
Confidence 45556677776554
No 99
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.71 E-value=1.3e-08 Score=100.83 Aligned_cols=78 Identities=8% Similarity=-0.058 Sum_probs=61.3
Q ss_pred ccccccCchhhHHHHHHHHH-----HhhcccCCCCeEEeec--cccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCe
Q 036401 1054 FRDMEQLSGGEKTVAALALL-----FSIHSYKPSPFFILDE--VDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGF 1126 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~-----~a~~~~~p~~~~~lDE--~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 1126 (1154)
.+.+..||||||++++||.+ ++.. |+++|||| |+++||+.....+.++|.+. +.
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~----p~llilDEigp~~~ld~~~~~~l~~~l~~~---------------~~ 131 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDR----RKVIIIDEIGKMELFSKKFRDLVRQIMHDP---------------NV 131 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCT----TCEEEECCCSTTGGGCHHHHHHHHHHHTCT---------------TS
T ss_pred cccccCcCHHHHHHHHHHhhccccccccC----CCEEEEeCCCCcccCCHHHHHHHHHHHhcC---------------CC
Confidence 45677899999999999996 7776 99999999 99999999999999988753 34
Q ss_pred eEEEEEe---chhHHH-hccc----eEEEeec
Q 036401 1127 QSIVISL---KDSFYD-KAEA----LVGVYRD 1150 (1154)
Q Consensus 1127 q~i~it~---~~~~~~-~~d~----~~GV~~~ 1150 (1154)
.+|++|| +..++. .|++ +|-|+..
T Consensus 132 ~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~ 163 (178)
T 1ye8_A 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCTT
T ss_pred eEEEEEccCCCchHHHHHHhcCCcEEEEecCc
Confidence 5888886 444443 6776 5554443
No 100
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.46 E-value=6.8e-08 Score=110.34 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=57.9
Q ss_pred cccCchhhHHHHHHHHH--HhhcccCCCCe----EEeec-cccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1057 MEQLSGGEKTVAALALL--FSIHSYKPSPF----FILDE-VDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~--~a~~~~~p~~~----~~lDE-~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
+..|||||+++++||++ |+.. |++ +|||| |+++||+. ...+.+++.++ +..+|
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~----p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---------------~~tvi 292 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLD----PQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---------------NVNIM 292 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC----HHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---------------TCCEE
T ss_pred hhhhhHHHHHHHHHHHHHHhccC----cccCcceEEEeCCcccccChh-HHHHHHHHHHh---------------CCCEE
Confidence 77999999999999999 9988 999 99999 99999999 77778887776 23499
Q ss_pred EEEechh--HH-----Hhccc
Q 036401 1130 VISLKDS--FY-----DKAEA 1143 (1154)
Q Consensus 1130 ~it~~~~--~~-----~~~d~ 1143 (1154)
+|||+.. +. ..||+
T Consensus 293 iVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 293 LVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp EEECCSSCTHHHHHHHHHHHH
T ss_pred EEEccCchhhhHHHHHHhccc
Confidence 9999865 32 68998
No 101
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.05 E-value=1.7e-05 Score=90.09 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=60.0
Q ss_pred ccccCchhhHHHHHHHHHHhhccc-------------CCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCC
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSY-------------KPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADE 1122 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~-------------~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~ 1122 (1154)
....+||||++-.-+|++-|+... .+..|+||||. +-||+.+....+++++.+
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------------- 441 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------------- 441 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT-------------
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc-------------
Confidence 477899999986655555554321 24478999999 999999999999999988
Q ss_pred CCCeeEEEEEechhHHHhccceEEEee
Q 036401 1123 GNGFQSIVISLKDSFYDKAEALVGVYR 1149 (1154)
Q Consensus 1123 ~~~~q~i~it~~~~~~~~~d~~~GV~~ 1149 (1154)
+.|+||+||. .+...+|..|-|++
T Consensus 442 --glQliiatP~-~i~p~v~~~~~~~r 465 (483)
T 3euj_A 442 --DMQLLIAAPE-NISPERGTTYKLVR 465 (483)
T ss_dssp --TCEEEEEESS-SCCCSSSEEEECCE
T ss_pred --CCEEEEECcc-hhhhccCceEEEEE
Confidence 7899999999 55557888887765
No 102
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.99 E-value=3.5e-06 Score=88.66 Aligned_cols=45 Identities=22% Similarity=0.574 Sum_probs=32.4
Q ss_pred EEEecc-eeccCceee-----cCCCC-eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 13 LELENF-KSYKGLQII-----GPFSD-FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~~~~~-~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|++.|. ++|.+..++ ....| +++|+|||||||||++.+|+-.+-.
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 677776 577665433 11234 9999999999999999998755433
No 103
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.99 E-value=3.4e-06 Score=89.11 Aligned_cols=48 Identities=35% Similarity=0.519 Sum_probs=34.4
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
|++.|+ ++|.+..++ . +...+++|+|||||||||++.+|+-.+-..++
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred EEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 677776 667766543 1 12349999999999999999998765544443
No 104
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.96 E-value=7.7e-07 Score=90.18 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1063 GEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1063 Gek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|||++++||++|+.. |+++||||||++ ++..+.++|.++ . .+..+| |||+...+.
T Consensus 108 Gq~qrv~lAraL~~~----p~lllLDEPts~----~~~~l~~~l~~l------------~-~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 VEVAPLAYMRGRTLN----DAFVILDEAQNT----TPAQMKMFLTRL------------G-FGSKMV-VTGDITQVD 162 (208)
T ss_dssp EEEEEGGGGTTCCBC----SEEEEECSGGGC----CHHHHHHHHTTB------------C-TTCEEE-EEEC-----
T ss_pred chHHHHHHHHHHhcC----CCEEEEeCCccc----cHHHHHHHHHHh------------c-CCCEEE-EECCHHHHh
Confidence 999999999999988 999999999999 899999999988 2 356688 999976654
No 105
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.91 E-value=6.1e-06 Score=87.12 Aligned_cols=43 Identities=30% Similarity=0.617 Sum_probs=31.2
Q ss_pred EEEecc-eeccCceee-----cCCCC-eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 13 LELENF-KSYKGLQII-----GPFSD-FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~~~~~-~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|++.|. ++|.+..++ ....| +++|+|||||||||++.+|+-.+
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 677776 567654433 12234 99999999999999999976544
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.90 E-value=7.7e-06 Score=96.48 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=63.8
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchh-----hHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNL-----NVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
++..||||+++++++|.+++.. |+++|+| |+++||.. .+..+..++..+. ..+..+|+
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~----p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~------------~~g~tvil 412 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFK----PARIAID-SLSALARGVSNNAFRQFVIGVTGYAK------------QEEITGLF 412 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTC----CSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH------------HTTCEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhC----CCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH------------hCCCEEEE
Confidence 3568999999999999999877 9999999 99999999 9999999999884 24667999
Q ss_pred EEech----------hHH-HhccceEEE
Q 036401 1131 ISLKD----------SFY-DKAEALVGV 1147 (1154)
Q Consensus 1131 it~~~----------~~~-~~~d~~~GV 1147 (1154)
|||.. ..+ ..||+++-+
T Consensus 413 vsh~~~~~~~~~~~~~~l~~~~D~vi~L 440 (525)
T 1tf7_A 413 TNTSDQFMGAHSITDSHISTITDTIILL 440 (525)
T ss_dssp EEECSSSSCCCSSCSSCCTTTCSEEEEE
T ss_pred EECcccccCcccccCcccceeeeEEEEE
Confidence 99986 444 479998633
No 107
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.86 E-value=7.3e-06 Score=85.42 Aligned_cols=45 Identities=31% Similarity=0.566 Sum_probs=31.6
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||++.+|+-.+-.
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 667775 567664333 1 12349999999999999999998654433
No 108
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.84 E-value=8.3e-06 Score=85.98 Aligned_cols=46 Identities=39% Similarity=0.597 Sum_probs=32.8
Q ss_pred EEEecc-eeccCceee---c---CCCCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 13 LELENF-KSYKGLQII---G---PFSDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i---~---~~~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||++.+|+-.+-..
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 677776 577665443 1 123499999999999999999987555433
No 109
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.83 E-value=7.8e-06 Score=86.94 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=32.6
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||++.+|+-.+-..
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 677776 567665433 1 123499999999999999999987555433
No 110
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.79 E-value=1e-05 Score=85.63 Aligned_cols=47 Identities=30% Similarity=0.468 Sum_probs=32.7
Q ss_pred EEEecc-eeccCce-ee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 13 LELENF-KSYKGLQ-II-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 13 l~l~nF-ks~~~~~-~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
|++.|. ++|.+.. ++ . +...+++|+|||||||||++.+|+-.+-..+
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 677775 6775432 22 1 1234999999999999999999876554433
No 111
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.75 E-value=1.8e-05 Score=86.49 Aligned_cols=43 Identities=23% Similarity=0.470 Sum_probs=31.7
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|++.|. ++|.+..++ . +...|++|+|||||||||++.+|+-.+
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 677775 677766543 1 223499999999999999999876544
No 112
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.75 E-value=1.3e-05 Score=82.43 Aligned_cols=44 Identities=34% Similarity=0.616 Sum_probs=31.0
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||++.+|+-.+-
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 666775 567654333 1 1234999999999999999999865443
No 113
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.75 E-value=1.5e-05 Score=80.96 Aligned_cols=44 Identities=30% Similarity=0.568 Sum_probs=30.6
Q ss_pred EEEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 12 RLELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 12 ~l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.|++.|. ++|.+ .++ . +...+++|+|||||||||++.+|+-.+-
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3566665 56655 433 1 1234999999999999999999865543
No 114
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.72 E-value=2.8e-05 Score=96.06 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=59.7
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHH-HHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKV-AGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
....+|+|+..+..+|.++.. +.+|+++|||||++|+|+.....+ ..++..+.. ..+..+||+||.
T Consensus 718 l~~~lStf~~e~~~~a~il~~--a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-----------~~g~~vl~aTH~ 784 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRS--ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-----------KIGAFCMFATHF 784 (934)
T ss_dssp -----CHHHHHHHHHHHHHHH--CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-----------TTCCEEEEEESC
T ss_pred HHHhHhhhHHHHHHHHHHHHh--ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-----------cCCCEEEEEcCc
Confidence 345788888888888888843 456899999999999999988777 666676631 136679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
.++...||++++|
T Consensus 785 ~el~~lad~~~~v 797 (934)
T 3thx_A 785 HELTALANQIPTV 797 (934)
T ss_dssp GGGGGGGGTCTTE
T ss_pred HHHHHHhccccee
Confidence 9999999988665
No 115
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.71 E-value=2e-05 Score=82.55 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=31.3
Q ss_pred EEEecc-eeccCceee-----cCCCC-eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 13 LELENF-KSYKGLQII-----GPFSD-FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~~~~~-~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|++.|. ++|.+..++ ....| +++|+|||||||||++.+|+-.+-.
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 556665 567654433 11234 9999999999999999998655433
No 116
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.66 E-value=2.2e-05 Score=96.60 Aligned_cols=75 Identities=8% Similarity=0.062 Sum_probs=58.4
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHH-HHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVA-GFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~-~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
...++.+|||+++++.++.. +.+|++++||||++|||+.....++ .++..+.. ..+..+|++|
T Consensus 730 ~~~~stfs~em~~~~~il~~-----a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~-----------~~g~tvl~vT 793 (918)
T 3thx_B 730 YKGRSTFMEELTDTAEIIRK-----ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR-----------DVKSLTLFVT 793 (918)
T ss_dssp ----CCHHHHHHHHHHHHHH-----CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH-----------TTCCEEEEEC
T ss_pred HHhHHHhhHHHHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-----------hcCCeEEEEe
Confidence 35578899999999888776 4569999999999999999988887 67777621 1366799999
Q ss_pred echhHHHhccce
Q 036401 1133 LKDSFYDKAEAL 1144 (1154)
Q Consensus 1133 ~~~~~~~~~d~~ 1144 (1154)
|..++...||++
T Consensus 794 H~~el~~l~~~~ 805 (918)
T 3thx_B 794 HYPPVCELEKNY 805 (918)
T ss_dssp SCGGGGGHHHHT
T ss_pred CcHHHHHHHhhc
Confidence 998888877754
No 117
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.63 E-value=3e-05 Score=81.29 Aligned_cols=42 Identities=38% Similarity=0.590 Sum_probs=29.9
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||++.+|+-.
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566665 567654433 1 12349999999999999999997754
No 118
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.61 E-value=3.8e-05 Score=84.54 Aligned_cols=43 Identities=28% Similarity=0.543 Sum_probs=32.1
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|++.|. ++|.+..++ . +...|++|+|||||||||++.+|+-.+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 778886 788766543 1 223499999999999999999976433
No 119
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.60 E-value=4.3e-05 Score=80.89 Aligned_cols=42 Identities=31% Similarity=0.520 Sum_probs=30.3
Q ss_pred EEEecc-eeccCceee-----cCCC-CeEEEEcCCCCCHHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQII-----GPFS-DFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~~~~-~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
|++.|. ++|.+..++ .... .+++|+|||||||||++.+|+-.
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 666675 567654433 1123 49999999999999999998754
No 120
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.60 E-value=5.3e-05 Score=83.56 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=31.1
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||+|.+|+-.+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 677775 677665433 1 223499999999999999999976443
No 121
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.59 E-value=3.4e-05 Score=80.52 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
.+++|+|||||||||++.+|+-.+-..++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 39999999999999999998755543333
No 122
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.59 E-value=3.5e-05 Score=79.98 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|+-.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 499999999999999999976443
No 123
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.56 E-value=3.9e-05 Score=80.16 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=32.1
Q ss_pred eEEEEecc-eec--cCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 11 HRLELENF-KSY--KGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 11 ~~l~l~nF-ks~--~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.-|++.|. ++| .+..++ . +...+++|+|||||||||++.+|+-.+-..
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34667775 567 233332 1 223499999999999999999976555333
No 124
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.52 E-value=4.8e-05 Score=80.61 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=31.9
Q ss_pred EEEecc-eeccC---ceee-----cCCC-CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 13 LELENF-KSYKG---LQII-----GPFS-DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 13 l~l~nF-ks~~~---~~~i-----~~~~-~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
|++.|. ++|.+ ..++ .... .+++|+|||||||||++.+|+-.+-..+
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~ 73 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 667775 46654 3222 1223 4999999999999999999866554333
No 125
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.52 E-value=6.4e-05 Score=82.43 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=30.3
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||+|.+|+-.
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 567775 677654433 1 22349999999999999999997643
No 126
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.51 E-value=7e-05 Score=82.23 Aligned_cols=41 Identities=34% Similarity=0.644 Sum_probs=29.9
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||+|.+|+-
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 667775 677654433 1 2234999999999999999999764
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=4.8e-05 Score=75.57 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=23.1
Q ss_pred cCCCC-eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 28 GPFSD-FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 28 ~~~~~-~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
||+.| +++|+|||||||||++.+|.-.+
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56666 99999999999999999987655
No 128
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.47 E-value=4.1e-05 Score=79.88 Aligned_cols=26 Identities=35% Similarity=0.672 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
..+++|+|||||||||++.+|+-.+-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34999999999999999999765543
No 129
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.47 E-value=1.3e-05 Score=81.04 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
..+++|+|||||||||++.+|+-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 349999999999999999998765
No 130
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.45 E-value=7.1e-05 Score=79.21 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++.+|+-.+-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4999999999999999999865443
No 131
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.44 E-value=7.2e-05 Score=81.78 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=29.9
Q ss_pred EEEecc-eec-cCceee---c---CCCCeEEEEcCCCCCHHHHHHHHHH
Q 036401 13 LELENF-KSY-KGLQII---G---PFSDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 13 l~l~nF-ks~-~~~~~i---~---~~~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
|++.|. ++| .+..++ . +...+++|+|||||||||+|.+|+-
T Consensus 15 l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 677776 677 544332 1 1234999999999999999999763
No 132
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.44 E-value=6.9e-05 Score=78.91 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=29.5
Q ss_pred EEEecc-eeccCc---eee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 13 LELENF-KSYKGL---QII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 13 l~l~nF-ks~~~~---~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|++.|. ++|.+. .++ . +...+++|+|||||||||++.+|+-.+
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 566665 466542 122 1 223499999999999999999986543
No 133
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.44 E-value=8.3e-05 Score=82.19 Aligned_cols=41 Identities=22% Similarity=0.480 Sum_probs=30.3
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
|++.|. ++|.+..++ . +...+++|+|||||||||+|.+|+-
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 677775 677665433 1 1234999999999999999999764
No 134
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.44 E-value=8.1e-05 Score=71.42 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
.+++|+|||||||||++.+|+-.+ +..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 399999999999999999999988 4443
No 135
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.43 E-value=1.8e-05 Score=88.47 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=58.3
Q ss_pred Cchh--hHHHHHHHHHHhhccc------CCCCeEEeeccccccchhhHHHHHHHHHhcc-----cCCCCCCCCCCCCCCe
Q 036401 1060 LSGG--EKTVAALALLFSIHSY------KPSPFFILDEVDAALDNLNVAKVAGFIRSKS-----CEGTRGNQDADEGNGF 1126 (1154)
Q Consensus 1060 lSgG--ek~~~~la~~~a~~~~------~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~-----~~~~~~~~~a~~~~~~ 1126 (1154)
|||| ++++++||.+|+.+.. ..|++++||||+++||+.++..+.++|.++. ..|. . ...
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~-------~-~~~ 226 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI-------A-EPP 226 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC-------S-SCC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC-------C-CCc
Confidence 9999 9999999999988211 1378999999999999999999999999883 1121 1 223
Q ss_pred eEEEEEechh---HHHhccceE
Q 036401 1127 QSIVISLKDS---FYDKAEALV 1145 (1154)
Q Consensus 1127 q~i~it~~~~---~~~~~d~~~ 1145 (1154)
-|+|.||... +-..||.+.
T Consensus 227 iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 227 IFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp EEECCTTCTTSTTHHHHHHHHH
T ss_pred EEEEecCcCCccCHHHHHHHHH
Confidence 4667788643 555777764
No 136
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.42 E-value=6.6e-05 Score=76.68 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 29 PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 29 ~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|...+++|+||||||||||+.+|+-.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 445699999999999999999987665
No 137
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.40 E-value=0.00015 Score=82.33 Aligned_cols=58 Identities=26% Similarity=0.249 Sum_probs=46.4
Q ss_pred CCCCCCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc
Q 036401 3 SLLSPGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ 61 (1154)
Q Consensus 3 ~~~~~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~ 61 (1154)
||...|.+.++.+.||..+.+.+.--+. .+++|+|||||||||++.+|+-.+-...+.
T Consensus 2 ~M~~~~~l~~l~~~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 2 HMIARGKFRSLTLINWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp -CCCCCEEEEEEEEEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred CcccccceeEEEEeccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 4565678999999999988876633334 899999999999999999999888665543
No 138
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.39 E-value=0.0001 Score=80.56 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+|||||||||++.+|+-.+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3499999999999999999887544
No 139
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.39 E-value=7.1e-05 Score=78.68 Aligned_cols=29 Identities=45% Similarity=0.730 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
..+++|+|||||||||++.+|+-.+ ..++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 4499999999999999999987666 5443
No 140
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.39 E-value=7.8e-05 Score=78.07 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=30.8
Q ss_pred EEEecc-eecc-Cceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 13 LELENF-KSYK-GLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 13 l~l~nF-ks~~-~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
|++.|. ++|. +..++ . +...+++|+|||||||||++.+|+-.+-
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 666775 5665 54333 1 1234999999999999999999765443
No 141
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.38 E-value=7.4e-05 Score=81.67 Aligned_cols=40 Identities=28% Similarity=0.633 Sum_probs=28.0
Q ss_pred EEEecc-eeccCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
|++.|. ++|.+. ++ . +...+++|+|||||||||+|.+|+-
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 455564 566553 22 1 2234999999999999999999753
No 142
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.37 E-value=5.7e-05 Score=78.24 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
..+++|+|||||||||++.+|+-.+-..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 59 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 34999999999999999999875554433
No 143
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.36 E-value=9.1e-05 Score=76.44 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=29.2
Q ss_pred EEEecc-eecc--Cceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 13 LELENF-KSYK--GLQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 13 l~l~nF-ks~~--~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|++.|. ++|. +..++ . +...+++|+|||||||||++.+|+-.+
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 667775 4663 22222 1 223499999999999999999976444
No 144
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.34 E-value=6.2e-05 Score=82.68 Aligned_cols=41 Identities=29% Similarity=0.475 Sum_probs=28.9
Q ss_pred EEEecc-eeccCce--ee-----c-CCCCeEEEEcCCCCCHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQ--II-----G-PFSDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 13 l~l~nF-ks~~~~~--~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
|++.|. ++|.+.. ++ . +...+++|+|||||||||+|.+|+-
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 566664 5665543 22 1 2234999999999999999999764
No 145
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.33 E-value=0.017 Score=60.23 Aligned_cols=24 Identities=4% Similarity=0.303 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 036401 425 REHELDAQEDQMRKRQKNILDASG 448 (1154)
Q Consensus 425 ~~~~l~~~~~~l~~~~~~l~~~l~ 448 (1154)
.+..+..++..+..+...+...+.
T Consensus 151 ~~~e~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 151 EVKNIKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444555555555555555554
No 146
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.27 E-value=0.06 Score=55.97 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=5.6
Q ss_pred HHHHHHHHHhh
Q 036401 504 KLSQAVETLKR 514 (1154)
Q Consensus 504 ~~~~~l~~l~~ 514 (1154)
.+...+..+..
T Consensus 176 ~lL~~Yerir~ 186 (256)
T 3na7_A 176 KIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555554
No 147
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.27 E-value=9.7e-05 Score=78.81 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+|||||||||++.+|+-.+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3499999999999999999976443
No 148
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.27 E-value=0.00016 Score=80.38 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=29.4
Q ss_pred EEEEecc-eec--cCceee-----c-CCCCeEEEEcCCCCCHHHHHHHHH
Q 036401 12 RLELENF-KSY--KGLQII-----G-PFSDFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 12 ~l~l~nF-ks~--~~~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~ 52 (1154)
.|++.|. ++| .+..++ . +...|++|+|||||||||+|.+|+
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 3678885 677 333322 1 223499999999999999999875
No 149
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.26 E-value=0.00012 Score=75.15 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+|||||||||++.+|+-.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3499999999999999999987655
No 150
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.26 E-value=0.00013 Score=75.71 Aligned_cols=28 Identities=32% Similarity=0.669 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.+++|+|||||||||++.+|+-.+-..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDR 52 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 8999999999999999999876554333
No 151
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.23 E-value=0.00016 Score=73.74 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+|||||||||++.+|+-.+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3499999999999999999998765
No 152
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.22 E-value=0.00011 Score=78.83 Aligned_cols=48 Identities=29% Similarity=0.484 Sum_probs=31.9
Q ss_pred EEEEecc-eeccC-ceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 12 RLELENF-KSYKG-LQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 12 ~l~l~nF-ks~~~-~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.|++.|. .+|.+ ..++ . +...+++|||||||||||++.+|+-.+-...
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~ 108 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 3777775 56743 3322 1 2234999999999999999988765443333
No 153
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.18 E-value=0.00018 Score=70.88 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+++|+|||||||||++.+|+-.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998775
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.11 E-value=0.00024 Score=72.36 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|+-.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999987654
No 155
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.11 E-value=0.00025 Score=69.53 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCCHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDA 50 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildA 50 (1154)
.+++|+|||||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4999999999999999996
No 156
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00022 Score=71.88 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++..|+-.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 488999999999999999987543
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.08 E-value=0.00027 Score=70.02 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=23.1
Q ss_pred eecCCCC-eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 26 IIGPFSD-FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 26 ~i~~~~~-~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+.|+.| +++|+||+|||||||+.+|+--+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3455566 99999999999999999987544
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.07 E-value=0.00024 Score=70.96 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++.+|+-.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3789999999999999999886653
No 159
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.02 E-value=0.00022 Score=77.92 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhc
Q 036401 1062 GGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKA 1141 (1154)
Q Consensus 1062 gGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~ 1141 (1154)
||++++.+||.+|... ||+++||||++. .+.++|..+. ..+..+|++||...+...|
T Consensus 225 gg~~~r~~la~aL~~~----p~ilildE~~~~-------e~~~~l~~~~------------~g~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 225 GNITSADCLKSCLRMR----PDRIILGELRSS-------EAYDFYNVLC------------SGHKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp TTBCHHHHHHHHTTSC----CSEEEECCCCST-------HHHHHHHHHH------------TTCCCEEEEEECSSHHHHH
T ss_pred CChhHHHHHHHHhhhC----CCEEEEcCCChH-------HHHHHHHHHh------------cCCCEEEEEEcccHHHHHh
Confidence 8999999999998776 999999999982 2566777772 2344699999998888899
Q ss_pred cceEE
Q 036401 1142 EALVG 1146 (1154)
Q Consensus 1142 d~~~G 1146 (1154)
|+++.
T Consensus 282 dri~~ 286 (330)
T 2pt7_A 282 IRLAN 286 (330)
T ss_dssp HHHHH
T ss_pred hhhee
Confidence 99853
No 160
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.02 E-value=0.00065 Score=73.61 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=51.7
Q ss_pred cCchhh-HHHHHHHHHHhhcccCCCCeEEeecccc---c---cch-hhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1059 QLSGGE-KTVAALALLFSIHSYKPSPFFILDEVDA---A---LDN-LNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1059 ~lSgGe-k~~~~la~~~a~~~~~p~~~~~lDE~d~---~---lD~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
.+|.|+ ++++. |++++.. |+++|+|||++ + +|+ ..+..+...|+.++++ .+..+|+
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~----p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~-----------~~~~vi~ 192 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLG----CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS-----------TGVVLVV 192 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTC----CSEEEEEEEC-----------CHHHHHHHHHHHHHHHH-----------HCCEEEE
T ss_pred CCCHHHHHHHHH-HHHHhcC----CCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH-----------hCCeEEE
Confidence 466676 55555 6666655 99999999999 4 454 5667888888888321 3567999
Q ss_pred EEech-----------------------hHHHhccceEEEeec
Q 036401 1131 ISLKD-----------------------SFYDKAEALVGVYRD 1150 (1154)
Q Consensus 1131 it~~~-----------------------~~~~~~d~~~GV~~~ 1150 (1154)
|||.. .+...||.++.++..
T Consensus 193 vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 193 ICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp EEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred EEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 99984 344589999877543
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.00 E-value=0.00035 Score=71.16 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++.+|.-.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3999999999999999999988875
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.99 E-value=0.0003 Score=73.98 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.++++|+|||||||||++.+|.-.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4599999999999999999987655
No 163
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.98 E-value=0.0014 Score=68.20 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=58.2
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCC--eEEeecccccc--chhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSP--FFILDEVDAAL--DNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~--~~~lDE~d~~l--D~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..|+|+......+++.... |+ ++|+|||++++ |+..+..++..|+.+.+ ..+..+|++||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~----~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~-----------~~~~~vi~~~h~ 167 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLG----YGKARLVIDSVSALFLDKPAMARKISYYLKRVLN-----------KWNFTIYATSQY 167 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHC----SSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHH-----------HTTEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHhhC----CCceEEEEECchHhhcCCHHHHHHHHHHHHHHHH-----------hCCCeEEEEecc
Confidence 3488988777777666554 77 99999999988 99999999999998831 246789999998
Q ss_pred h--------h-HHHhccceEEEeec
Q 036401 1135 D--------S-FYDKAEALVGVYRD 1150 (1154)
Q Consensus 1135 ~--------~-~~~~~d~~~GV~~~ 1150 (1154)
. . +...||.++-+...
T Consensus 168 ~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 168 AITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp ----------CHHHHCSEEEEEEEE
T ss_pred CcccccccccchheeeeEEEEEEEE
Confidence 6 2 45589999776543
No 164
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.95 E-value=0.00038 Score=72.96 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+++|+|||||||||++..|+-.+|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhch
Confidence 8999999999999999999887764
No 165
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.94 E-value=0.00044 Score=73.83 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 30 FSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 30 ~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
...+++|||||||||||++.+|.-.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34599999999999999999998766
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.89 E-value=0.00056 Score=69.16 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
..+++|+|||||||||++.+|.-.+|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 348999999999999999999877764
No 167
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.88 E-value=0.00031 Score=78.37 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=27.9
Q ss_pred ceeEEEEecceeccCceee-----cCCCC-e--EEEEcCCCCCHHHHHHHHHHH
Q 036401 9 KIHRLELENFKSYKGLQII-----GPFSD-F--TAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~~~i-----~~~~~-~--~~IvG~NGsGKS~ildAi~~~ 54 (1154)
.+..|.+.|-++|++.. + ....| + ++|||||||||||++.+|+-.
T Consensus 13 ~~~~l~~~~~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 13 GCRTVPLAGHVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp ----CCCCCCC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEEEeeEEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34556677777776643 2 22234 6 899999999999999997643
No 168
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.86 E-value=0.00068 Score=82.22 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=53.7
Q ss_pred ccCchhhHHHHHHHHHHhhcccCCCCeEEeecc---ccccchhhH-HHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1058 EQLSGGEKTVAALALLFSIHSYKPSPFFILDEV---DAALDNLNV-AKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1058 ~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~---d~~lD~~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
..+|+|++.++.++.++.. +.+|++++|||| |++||+... ..+.++|.+. +..+|++||
T Consensus 634 ~g~S~~~~e~~~la~il~~--a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~---------------g~~vl~~TH 696 (765)
T 1ewq_A 634 GGKSTFMVEMEEVALILKE--ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER---------------RAYTLFATH 696 (765)
T ss_dssp -CCSHHHHHHHHHHHHHHH--CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH---------------TCEEEEECC
T ss_pred hcccHHHHHHHHHHHHHHh--ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhC---------------CCEEEEEeC
Confidence 4589999999999888742 466999999999 999999886 5677777653 456999999
Q ss_pred chhHHHhc
Q 036401 1134 KDSFYDKA 1141 (1154)
Q Consensus 1134 ~~~~~~~~ 1141 (1154)
+.++...|
T Consensus 697 ~~~l~~~~ 704 (765)
T 1ewq_A 697 YFELTALG 704 (765)
T ss_dssp CHHHHTCC
T ss_pred CHHHHHhh
Confidence 98877655
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.83 E-value=0.0005 Score=70.29 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++..|+-.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3899999999999999999988776
No 170
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.80 E-value=0.00053 Score=72.36 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
..+++|+|||||||||++.+|+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34999999999999999999883
No 171
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.00065 Score=67.39 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+++|+|||||||||++..|+-.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 67899999999999999988877
No 172
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.79 E-value=0.00057 Score=83.42 Aligned_cols=76 Identities=9% Similarity=0.048 Sum_probs=52.9
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHH-HHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKV-AGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+.+|+|++.++.+ +. .+.+|+++|||||++|+|+.....+ ..++..+.. ..+..+|++||+
T Consensus 666 ~~stf~~e~~~~~~i-l~----~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~-----------~~g~~vl~~TH~ 729 (800)
T 1wb9_A 666 GRSTFMVEMTETANI-LH----NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN-----------KIKALTLFATHY 729 (800)
T ss_dssp ----CHHHHHHHHHH-HH----HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH-----------TTCCEEEEECSC
T ss_pred hhhhhhHHHHHHHHH-HH----hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh-----------ccCCeEEEEeCC
Confidence 345678887654332 22 2567999999999999999877665 677777731 136679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
.++...||++.+|
T Consensus 730 ~el~~l~d~~~~v 742 (800)
T 1wb9_A 730 FELTQLPEKMEGV 742 (800)
T ss_dssp GGGGGHHHHSTTE
T ss_pred HHHHHHhhhhhce
Confidence 8888888876554
No 173
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.76 E-value=0.0006 Score=68.41 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|+-.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 388999999999999999986543
No 174
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.74 E-value=0.00076 Score=84.62 Aligned_cols=74 Identities=8% Similarity=0.110 Sum_probs=54.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhh-HHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLN-VAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
...+.+|||++. +++|+.+|.. |+++|||||++|+|+.. ...++.+|..+.. ..+..+||+||
T Consensus 847 ~~~stf~~em~~-~a~al~la~~----~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~-----------~~g~~vl~~TH 910 (1022)
T 2o8b_B 847 SGESTFFVELSE-TASILMHATA----HSLVLVDELGRGTATFDGTAIANAVVKELAE-----------TIKCRTLFSTH 910 (1022)
T ss_dssp ---CHHHHHHHH-HHHHHHHCCT----TCEEEEECTTTTSCHHHHHHHHHHHHHHHHH-----------TSCCEEEEECC
T ss_pred hchhhhHHHHHH-HHHHHHhCCC----CcEEEEECCCCCCChHHHHHHHHHHHHHHHh-----------cCCCEEEEEeC
Confidence 445678888775 6666666654 99999999999999988 4667888888831 12567999999
Q ss_pred chhHHH-hccce
Q 036401 1134 KDSFYD-KAEAL 1144 (1154)
Q Consensus 1134 ~~~~~~-~~d~~ 1144 (1154)
..+... .||++
T Consensus 911 ~~el~~~~~d~~ 922 (1022)
T 2o8b_B 911 YHSLVEDYSQNV 922 (1022)
T ss_dssp CHHHHHHTSSCS
T ss_pred CHHHHHHhCCcc
Confidence 977775 56654
No 175
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.73 E-value=0.00046 Score=71.67 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHH-HHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAIS-FVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~-~~l 55 (1154)
.+++|+|||||||||++.+|+ -.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999987 443
No 176
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.68 E-value=0.0001 Score=75.17 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=45.4
Q ss_pred CCCCeEEeecccccc----chhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh-HHHhccceEEEeecCCC
Q 036401 1080 KPSPFFILDEVDAAL----DNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1080 ~p~~~~~lDE~d~~l----D~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.+||+.+||||++++ |+..+..+.+++.++.. ..+..+|+|||+.. ++..||+++-. ..+|+
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~-----------~~g~tvi~vtHdl~~~~~~~d~i~~l-~~p~~ 206 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAA-----------QGDFDKVVVNRRLESACAELVSLLVG-TAPGS 206 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG-----------GGGSSEEEECSSHHHHHHHHHHHHC-------
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-----------hccCcEEEECCCHHHHHHHHHHHHHh-ccCCC
Confidence 459999999999998 78899999999999842 12456999999954 55689999743 34554
No 177
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.66 E-value=0.00088 Score=72.38 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++.+|+-.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3999999999999999999998774
No 178
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.66 E-value=0.00095 Score=67.86 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+.+++|+|||||||||++.+|+-.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999886654
No 179
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.62 E-value=0.001 Score=66.55 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+++|+|||||||||++.+|.-.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 788999999999999999975443
No 180
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.61 E-value=0.0011 Score=71.26 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+++|||||||||||++.+|+..+-..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 499999999999999999999877443
No 181
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.61 E-value=0.00081 Score=69.85 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 499999999999999999988754
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.61 E-value=0.0011 Score=69.59 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+++|+|||||||||++.+|+--+|..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 489999999999999999999767653
No 183
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.60 E-value=0.00097 Score=73.32 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.++++|+|||||||||++.||+-.+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45999999999999999999876653
No 184
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.59 E-value=0.51 Score=65.57 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=10.9
Q ss_pred HHHHHH--HhCCeEecCCh
Q 036401 561 IKAVLF--AVGNTLVCDGL 577 (1154)
Q Consensus 561 i~ai~~--~lg~~lvve~~ 577 (1154)
+..++. -+|..|+++|.
T Consensus 2220 ~~~LE~ai~fG~pvLienv 2238 (3245)
T 3vkg_A 2220 MKNLESALRFGCPLLVQDV 2238 (3245)
T ss_dssp HHHHHHHHHHTCCEECCCC
T ss_pred HHHHHHHHHcCCeEEEccc
Confidence 334444 35888888876
No 185
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.58 E-value=0.00083 Score=71.01 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.++|||||||||||++.+|+-.+-..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 468999999999999999987765444
No 186
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.58 E-value=0.002 Score=67.89 Aligned_cols=57 Identities=5% Similarity=-0.045 Sum_probs=43.5
Q ss_pred CCCeEEeeccccccc-----hhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH----------Hhc-cce
Q 036401 1081 PSPFFILDEVDAALD-----NLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY----------DKA-EAL 1144 (1154)
Q Consensus 1081 p~~~~~lDE~d~~lD-----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~----------~~~-d~~ 1144 (1154)
.|++++||||+++|| +..+..+..++..+. ..+..+|+|||..... ..| |.+
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~------------~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~v 202 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL------------EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGV 202 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH------------HHCCEEEEEECCC----CCSSSSSCGGGGCSEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH------------HCCCeEEEEECCCCCCcccccccChhhEeeeEE
Confidence 499999999999998 666777889998883 2466799999995553 577 999
Q ss_pred EEEee
Q 036401 1145 VGVYR 1149 (1154)
Q Consensus 1145 ~GV~~ 1149 (1154)
+-+..
T Consensus 203 i~l~~ 207 (251)
T 2ehv_A 203 IVLDL 207 (251)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 76643
No 187
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.53 E-value=0.0013 Score=64.61 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+|||||||||+..+|.-.+|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37889999999999999999988875
No 188
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0011 Score=71.20 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+++|||||||||||++..|+..+-.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 38889999999999999888877643
No 189
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.49 E-value=0.0016 Score=70.70 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+++|+|||||||||++.+|+-.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998776
No 190
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.49 E-value=0.0016 Score=77.57 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=33.4
Q ss_pred EEEEecc-eeccC--ceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 12 RLELENF-KSYKG--LQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 12 ~l~l~nF-ks~~~--~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
.|+++|. .+|.+ ..++ . +...+++|||||||||||++.+|+-.+-...+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 4777775 56753 2222 1 22349999999999999999998765544443
No 191
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.47 E-value=0.0014 Score=66.59 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++..|.-.+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999987655
No 192
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.40 E-value=0.0018 Score=72.84 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.++++|+|||||||||++.||.-.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 4599999999999999999988776443
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.39 E-value=0.0019 Score=67.86 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.+++|+||||||||||+..|.--||...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 4889999999999999999998887643
No 194
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.39 E-value=0.0016 Score=70.67 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+++|+|||||||||++..|+..+-.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 39999999999999999999987743
No 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.39 E-value=0.002 Score=63.37 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+++|+|||||||||+..+|.-.+|.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 8899999999999999999876764
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.36 E-value=0.0054 Score=62.90 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=53.1
Q ss_pred ccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhh--------HHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1058 EQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLN--------VAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1058 ~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~--------~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
..+|+|+.....++.+.++..- +|+++|+|||++++|+.. ...++..|+.+.++ .+..+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~-----------~~~~vi 150 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARK-----------HNIPVI 150 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHH-----------HTCCEE
T ss_pred EecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHH-----------cCCEEE
Confidence 3456776655555554444432 689999999999999743 23444556666311 245699
Q ss_pred EEEechh--------------HHHhccceEEEeec
Q 036401 1130 VISLKDS--------------FYDKAEALVGVYRD 1150 (1154)
Q Consensus 1130 ~it~~~~--------------~~~~~d~~~GV~~~ 1150 (1154)
+++|... ....||.++-+...
T Consensus 151 ~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 151 VINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp EEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred EEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999643 34589999888765
No 197
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.35 E-value=0.0017 Score=65.54 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+.+++|+|||||||||+..+|.-.|+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999988774
No 198
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.34 E-value=0.0015 Score=72.66 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.++++|+|||||||||++.+|.-.+-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34999999999999999999887653
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.31 E-value=0.0019 Score=69.53 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+++|+|||||||||++.+|...++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 899999999999999999998886
No 200
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.31 E-value=0.0015 Score=73.05 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
++++|+|||||||||++.+|+-.+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 399999999999999999987544
No 201
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0019 Score=70.75 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|||||||||||++..|+..+-
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3888888888888888888877663
No 202
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.29 E-value=0.002 Score=61.22 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
...++|+||||||||+++.||+-.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999999998876
No 203
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.24 E-value=0.0032 Score=67.39 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=45.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeecccc--ccchhhH---HHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDA--ALDNLNV---AKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~--~lD~~~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
.++..||||+.+++ ..++. .|+++|||||++ ++|+... ..++..|..+.+ ..+..+|
T Consensus 114 ~~~~~ls~g~~~~i---~~l~~----~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~-----------~~g~tvi 175 (279)
T 1nlf_A 114 SLPNIMAPEWFDGL---KRAAE----GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAA-----------DTGCSIV 175 (279)
T ss_dssp SCCCTTSHHHHHHH---HHHHT----TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHH-----------HHCCEEE
T ss_pred CCcccCCHHHHHHH---HHhcC----CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHH-----------HcCCEEE
Confidence 35678999997654 23333 489999999999 8998654 777888887731 1356799
Q ss_pred EEEechhH
Q 036401 1130 VISLKDSF 1137 (1154)
Q Consensus 1130 ~it~~~~~ 1137 (1154)
+|||....
T Consensus 176 ~i~H~~~~ 183 (279)
T 1nlf_A 176 FLHHASKG 183 (279)
T ss_dssp EEEEC---
T ss_pred EEecCCCc
Confidence 99997544
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.23 E-value=0.002 Score=63.79 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
...+|+||||||||+++.+|+..+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988774
No 205
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.19 E-value=0.0016 Score=70.57 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=27.1
Q ss_pred cceeccCceeecCCCC-eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 17 NFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 17 nFks~~~~~~i~~~~~-~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
||..+.+.. .+...| +++|+|||||||||++..|+..+
T Consensus 21 g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 21 GCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444444433 343444 99999999999999999887654
No 206
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.18 E-value=0.0024 Score=72.20 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|||||||||||++.+|+..+-
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhh
Confidence 3999999999999999999987764
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.16 E-value=0.0024 Score=68.84 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.+++|+|||||||||++.+|. .+-..+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~ 192 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRT 192 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcc
Confidence 489999999999999999999 554333
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.14 E-value=0.00011 Score=75.44 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=54.6
Q ss_pred ccCchhhHHHHHH-----HHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1058 EQLSGGEKTVAAL-----ALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1058 ~~lSgGek~~~~l-----a~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..||||++++++| +++| +.|||+.+||||++++|......+...|..+... .. .+.. ....+|+++
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~l----l~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~-~~---~~h~-~~~d~iiv~ 191 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIF----IKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE-LH---EANL-LNFNLSIIN 191 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEE----EECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH-HH---HHTT-SCCSEEEEC
T ss_pred ecHHHHHHHHHHhcCCCcEEEE----EeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HH---hhcc-cCCCEEEEC
Confidence 4789999999888 3333 4579999999999999999888888877654210 00 0000 234578999
Q ss_pred ec-hhHHHhccceE
Q 036401 1133 LK-DSFYDKAEALV 1145 (1154)
Q Consensus 1133 ~~-~~~~~~~d~~~ 1145 (1154)
|+ .+.+..++.++
T Consensus 192 ~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 192 DDLTLTYQQLKNYL 205 (218)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 98 56666777664
No 209
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0024 Score=72.88 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+|||||||||++.+|+-.+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3599999999999999999987544
No 210
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.10 E-value=0.0018 Score=70.65 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
..+++|+|||||||||++.+|.-.+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35999999999999999999775543
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.10 E-value=0.0023 Score=71.02 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
..+++|+|||||||||++.+|+-.+-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35999999999999999999876543
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.08 E-value=0.00033 Score=74.15 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=44.3
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..||||+++++++|++++ .+++||||+.+||+.. ..+++.+. .. ..+|+|.|+.
T Consensus 95 ~~~~LS~G~~qrv~iaRal~-------~lllldep~~gL~~lD----~~~l~~L~------------~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 95 LKEEVNIARKKRIPDTRVHC-------CLYFISPTGHSLRPLD----LEFMKHLS------------KV-VNIIPVIAKA 150 (270)
T ss_dssp HHHHSCTTCCSSCCCCSCCE-------EEEEECCCSSSCCHHH----HHHHHHHH------------TT-SEEEEEETTG
T ss_pred hHHhcCcccchhhhhheeee-------eeEEEecCCCcCCHHH----HHHHHHHH------------hc-CcEEEEEecc
Confidence 46689999999999998754 4999999999999987 34455552 12 5588888775
Q ss_pred hHH
Q 036401 1136 SFY 1138 (1154)
Q Consensus 1136 ~~~ 1138 (1154)
..+
T Consensus 151 D~l 153 (270)
T 3sop_A 151 DTM 153 (270)
T ss_dssp GGS
T ss_pred ccC
Confidence 433
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0016 Score=63.30 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+++||||+||||||++.+|.-.+-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999998877643
No 214
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.00 E-value=0.0021 Score=66.52 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
.|++|+|||||||||++.+|.-.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 39999999999999999987644
No 215
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.99 E-value=0.0019 Score=69.41 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=44.3
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCC--eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSP--FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~--~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
...+..|| +++++||.+++.. |+ +++|| |+++||+.+.. ..+-.. .+..+|++
T Consensus 199 ~~~~~eLS---kqr~~iaral~~~----P~e~lLvLD-ptsglD~~~~~--~~~~~~---------------~g~t~iii 253 (302)
T 3b9q_A 199 YSLMEELI---ACKKAVGKIVSGA----PNEILLVLD-GNTGLNMLPQA--REFNEV---------------VGITGLIL 253 (302)
T ss_dssp HHHHHHHH---HHHHHHHTTSTTC----CSEEEEEEE-GGGGGGGHHHH--HHHHHH---------------TCCCEEEE
T ss_pred hHHHHHHH---HHHHHHHHhhccC----CCeeEEEEe-CCCCcCHHHHH--HHHHHh---------------cCCCEEEE
Confidence 35678899 9999999988877 99 99999 99999998653 222112 24569999
Q ss_pred Eechh
Q 036401 1132 SLKDS 1136 (1154)
Q Consensus 1132 t~~~~ 1136 (1154)
||-+.
T Consensus 254 ThlD~ 258 (302)
T 3b9q_A 254 TKLDG 258 (302)
T ss_dssp ECCSS
T ss_pred eCCCC
Confidence 99554
No 216
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.99 E-value=0.0023 Score=76.20 Aligned_cols=49 Identities=29% Similarity=0.548 Sum_probs=32.9
Q ss_pred EEEEecc-eeccC--ceee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 12 RLELENF-KSYKG--LQII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 12 ~l~l~nF-ks~~~--~~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
.|+++|. .+|.+ ..++ . +...+++|||||||||||++.+|+-.+-..++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 3777775 56753 2222 1 23349999999999999999997655543333
No 217
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.97 E-value=0.0036 Score=66.44 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
++|+||||||||+++.||+-.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC
Confidence 7899999999999999999887753
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.97 E-value=0.0034 Score=68.53 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|+-.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 489999999999999999987433
No 219
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.95 E-value=0.003 Score=70.53 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
....+|+|||||||||++.+|+-.+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45889999999999999999987775543
No 220
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.94 E-value=1.9 Score=60.14 Aligned_cols=27 Identities=30% Similarity=0.536 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
|-.++||..||||.++..-.+|..|-.
T Consensus 1647 GhaLLVGvgGSGkqSLtrLAa~i~~~~ 1673 (3245)
T 3vkg_A 1647 GHALLIGVSGGGKSVLSRFVAWMNGLS 1673 (3245)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHTTCE
T ss_pred CCeEEecCCCCcHHHHHHHHHHHhCCe
Confidence 344577777777777777777766654
No 221
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.94 E-value=0.0041 Score=62.72 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|.-.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999998765
No 222
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.93 E-value=0.0037 Score=64.88 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=27.5
Q ss_pred ecceeccCceeec-CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 16 ENFKSYKGLQIIG-PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 16 ~nFks~~~~~~i~-~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.||..+.+...=+ |...+++|+|||||||||++.+|+..+
T Consensus 7 tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 7 TGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3555554432101 233499999999999999999998654
No 223
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.92 E-value=0.0033 Score=63.82 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+|||||||||+...|.- +|.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 578999999999999999865 664
No 224
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.92 E-value=0.93 Score=40.99 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 279 LAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSKIKSSKKELERKREERRKHANDIKELQK 347 (1154)
Q Consensus 279 ~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~ 347 (1154)
...+..++..-...+.........+......+...+..+..++.........+......+...+..++.
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344444444444444444444443333333333333333
No 225
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=95.92 E-value=1.2 Score=45.23 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=32.4
Q ss_pred HHHHhhhcCCcc-eecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHH
Q 036401 509 VETLKRLFQGVH-GRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKEC 560 (1154)
Q Consensus 509 l~~l~~~~~gv~-g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~ 560 (1154)
|..+...|.||. .-+.|=|.+.+..| +++.+|+...+|||+|...++..
T Consensus 113 L~~LAe~~GGvlLseiYDDI~ieDApy---fsAlyGpar~AIVV~Dl~~~~~~ 162 (302)
T 3ibp_A 113 LNALAERFGGVLLSEIYDDVSLEDAPY---FSALYGPSRHAIVVPDLSQVTEH 162 (302)
T ss_dssp HHHHHHHSSSEEHHHHSTTCCTTTHHH---HHHHTGGGGSEEECSSCHHHHHH
T ss_pred HHHHHHHhCCEehhhhhcCCChhhHHH---HHHHhcccceeeEeCCHHHHHHH
Confidence 344455666652 22333245545455 88999999999999999887653
No 226
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.91 E-value=0.003 Score=75.38 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=32.0
Q ss_pred EEEEecc-eeccCc-eee-----c-CCCCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 12 RLELENF-KSYKGL-QII-----G-PFSDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 12 ~l~l~nF-ks~~~~-~~i-----~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.|+++|. .+|.+. .++ . +...+++|||||||||||++.+|+-.+-...
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 409 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCC
Confidence 4778885 466432 222 1 2234999999999999999998765443333
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.91 E-value=0.0037 Score=63.32 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+|||||||||+...|.- +|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~ 27 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAY 27 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCE
Confidence 468999999999999999988 7643
No 228
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.90 E-value=0.0027 Score=75.96 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=32.1
Q ss_pred EEEecc-eeccCc---eee------cCCCCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 13 LELENF-KSYKGL---QII------GPFSDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 13 l~l~nF-ks~~~~---~~i------~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
|+++|. ++|.+. .++ -+...+++|||||||||||++.+|+-.+-...
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 398 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 398 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 778885 567531 222 12334999999999999999999765543333
No 229
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.89 E-value=0.004 Score=68.25 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|.-.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 499999999999999999998665
No 230
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.89 E-value=0.0019 Score=76.92 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=31.6
Q ss_pred EEEEecc-eeccCc--eee------cCCCCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 12 RLELENF-KSYKGL--QII------GPFSDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 12 ~l~l~nF-ks~~~~--~~i------~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.|+++|. .+|.+. .++ -+...+++|||||||||||++.+|.-.+-...
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 4778875 466431 122 12334999999999999999988664443333
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.88 E-value=0.0048 Score=62.37 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+.+|+||+||||||+..+|.-.++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4889999999999999999987664
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.85 E-value=0.003 Score=69.19 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=44.8
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCC--eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSP--FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~--~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
...+..|| +++++||.+++.. |+ ++||| |+++||+.+... .+-.. .+..+|++
T Consensus 256 ~~~~~eLS---kqr~~iaral~~~----P~e~lLvLD-pttglD~~~~~~--~~~~~---------------~g~t~iii 310 (359)
T 2og2_A 256 YSLMEELI---ACKKAVGKIVSGA----PNEILLVLD-GNTGLNMLPQAR--EFNEV---------------VGITGLIL 310 (359)
T ss_dssp HHHHHHHH---HHHHHHHHHSTTC----CSEEEEEEE-GGGGGGGHHHHH--HHHHH---------------TCCCEEEE
T ss_pred hhHHHHHH---HHHHHHHHHHhcC----CCceEEEEc-CCCCCCHHHHHH--HHHHh---------------cCCeEEEE
Confidence 35678899 9999999999877 99 99999 999999987632 22112 24569999
Q ss_pred Eechh
Q 036401 1132 SLKDS 1136 (1154)
Q Consensus 1132 t~~~~ 1136 (1154)
||-+.
T Consensus 311 ThlD~ 315 (359)
T 2og2_A 311 TKLDG 315 (359)
T ss_dssp ESCTT
T ss_pred ecCcc
Confidence 99644
No 233
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.82 E-value=0.0033 Score=68.84 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+++|+|||||||||++..|+-.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 49999999999999999998877643
No 234
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.74 E-value=0.0056 Score=67.64 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 30 FSDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 30 ~~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+++|+|||||||||++.+|+-.+++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 34599999999999999999999877654
No 235
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.74 E-value=0.0041 Score=69.76 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=25.4
Q ss_pred EEEecc-eeccCceeecCCCCe-EEEEcCCCCCHHHHHHHHHH
Q 036401 13 LELENF-KSYKGLQIIGPFSDF-TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i~~~~~~-~~IvG~NGsGKS~ildAi~~ 53 (1154)
|.+.|. ++|.+..++..+ +| .+|||||||||||++.+|+-
T Consensus 12 l~~~~l~~~y~~~~vl~~v-sf~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGF-EFTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp ---CCCCCCTTTTTCC-CC-CEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEecceeECCEEEecCC-CEEEEEECCCCCcHHHHHHHHhC
Confidence 566665 566655444211 22 38999999999999998764
No 236
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.72 E-value=0.0046 Score=70.11 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.+++|+|||||||||++.+|+-.+....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 4999999999999999999887764433
No 237
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.71 E-value=0.0054 Score=63.33 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||+||||||+...|.--+|..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 68899999999999999998777643
No 238
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.70 E-value=0.0062 Score=60.07 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+.+|+||+||||||+..+|.-.|
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 88899999999999999998776
No 239
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.64 E-value=0.0038 Score=68.02 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
++++|+|||||||||++..|.-
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHh
Confidence 4899999999999999988764
No 240
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.62 E-value=0.0035 Score=74.54 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=31.9
Q ss_pred EEEEecc-eeccC--ceee------cCCCCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 12 RLELENF-KSYKG--LQII------GPFSDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 12 ~l~l~nF-ks~~~--~~~i------~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
.|+++|. .+|.+ ..++ -+...+++|||||||||||++.+|.-.+-...
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~ 397 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER 397 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 4778885 56632 2222 12334999999999999999998755443333
No 241
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.60 E-value=0.0037 Score=74.45 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
-|.++|||||||||||++.+|.-.+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3679999999999999999998655
No 242
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.60 E-value=0.005 Score=61.54 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
.++|+|||||||||++.+++-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5689999999999999997654
No 243
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.57 E-value=0.0031 Score=74.20 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=43.6
Q ss_pred CCeEEeeccccc-----cchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhH---------HH-hccceEE
Q 036401 1082 SPFFILDEVDAA-----LDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSF---------YD-KAEALVG 1146 (1154)
Q Consensus 1082 ~~~~~lDE~d~~-----lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~---------~~-~~d~~~G 1146 (1154)
+.+++||||++. ||+..+..+.+++..+. ..+..+|+|||+... +. .||+++-
T Consensus 139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~------------~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~ 206 (525)
T 1tf7_A 139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK------------QIGATTVMTTERIEEYGPIARYGVEEFVSDNVVI 206 (525)
T ss_dssp CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH------------HHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEE
T ss_pred CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH------------HCCCEEEEEecCCCCccccccccceeeeeeEEEE
Confidence 789999999984 58999999999999994 245679999999655 33 4999964
Q ss_pred E
Q 036401 1147 V 1147 (1154)
Q Consensus 1147 V 1147 (1154)
.
T Consensus 207 L 207 (525)
T 1tf7_A 207 L 207 (525)
T ss_dssp E
T ss_pred E
Confidence 3
No 244
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.57 E-value=0.0078 Score=60.54 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||+||||||+..+|.-.||..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 488999999999999999999888754
No 245
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.56 E-value=0.0058 Score=74.62 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
..+++|+|||||||||+|.+|+..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 349999999999999999998765
No 246
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.48 E-value=0.0066 Score=64.88 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+|||||||||++-.|+..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999888654
No 247
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.46 E-value=0.006 Score=65.82 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++.+|.-.+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 489999999999999999976433
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.46 E-value=0.0073 Score=60.94 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||+||||||+...|.-.+|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 488999999999999999998888743
No 249
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.46 E-value=0.0063 Score=61.26 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
-.+|+|||||||||++.+|+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4689999999999999998753
No 250
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.42 E-value=0.007 Score=73.37 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+|||||||||+|.+|+...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3599999999999999999988654
No 251
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.34 E-value=0.0058 Score=65.85 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=17.5
Q ss_pred eeccCceeecCCCCeEEEEcCCCCCHHHHHHHHH
Q 036401 19 KSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 19 ks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~ 52 (1154)
++|.+..++....=-.+|+|||||||||++.+|.
T Consensus 6 ~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp ------------CEEEEEEEETTSSHHHHHHHHH
T ss_pred ceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHh
Confidence 3455544442221122799999999999999965
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.32 E-value=0.0084 Score=62.60 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
..+++|+|||||||||++..|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 359999999999999999998874
No 253
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.31 E-value=0.0095 Score=65.48 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.++|+|||||||||++.+|+-.+|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 57889999999999999999998865
No 254
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.27 E-value=0.0064 Score=74.95 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+++|+|||||||||+|..|..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4999999999999999999864
No 255
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.25 E-value=0.01 Score=60.80 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
..+++|+|||||||||++..|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34999999999999999999887
No 256
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.25 E-value=0.0035 Score=67.01 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+++|+|||||||||++.+|.-
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4999999999999999999753
No 257
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.24 E-value=0.0071 Score=69.95 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++.||+-.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3789999999999999999876663
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.23 E-value=0.011 Score=61.29 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||+||||||+...|.--||..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 88999999999999999998878743
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.20 E-value=0.01 Score=63.45 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++..|+..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999987764
No 260
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.13 E-value=0.01 Score=62.38 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
++|+||||||||+++.||+-.++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998776
No 261
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.12 E-value=0.0099 Score=73.56 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~ 52 (1154)
.+++|+|||||||||+|..|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999984
No 262
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.10 E-value=1.3 Score=37.93 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 036401 414 NLEANLQQL 422 (1154)
Q Consensus 414 ~l~~~i~~~ 422 (1154)
.++..+...
T Consensus 27 ~~e~~~k~~ 35 (101)
T 3u1c_A 27 QAEADKKAA 35 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.09 E-value=0.011 Score=63.27 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++..|+..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHH
Confidence 4899999999999999999988774
No 264
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.09 E-value=0.0099 Score=60.22 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+++|+||+||||||+...|.-.+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 88999999999999999987655
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.08 E-value=0.019 Score=60.09 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceE
Q 036401 1067 VAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALV 1145 (1154)
Q Consensus 1067 ~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~ 1145 (1154)
+++|+.+|+.. |++++||||+ |+.....+.. .. . .+..+|++||.......||+++
T Consensus 88 ~~~la~aL~~~----p~illlDEp~---D~~~~~~~l~---~~------------~-~g~~vl~t~H~~~~~~~~dri~ 143 (261)
T 2eyu_A 88 ADALRAALRED----PDVIFVGEMR---DLETVETALR---AA------------E-TGHLVFGTLHTNTAIDTIHRIV 143 (261)
T ss_dssp HHHHHHHHHHC----CSEEEESCCC---SHHHHHHHHH---HH------------H-TTCEEEEEECCSSHHHHHHHHH
T ss_pred HHHHHHHHhhC----CCEEEeCCCC---CHHHHHHHHH---HH------------c-cCCEEEEEeCcchHHHHHHHHh
Confidence 67888888876 9999999999 8887655443 22 1 3556999999987777788764
No 266
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.06 E-value=1.9 Score=38.97 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 254 EKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSKIKSSKKELERKRE 333 (1154)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~l~~ 333 (1154)
...++..+...+...+.....+...+..+..+...+...+..-...+.........+......++..+..+..+++....
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444445455555444444444444444334444444444444444444444444333
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 036401 334 ERRKHANDIKELQKGIQDL 352 (1154)
Q Consensus 334 ~~~~~~~~l~~l~~~l~~l 352 (1154)
....+......+...+..+
T Consensus 98 ~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 267
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.00 E-value=0.013 Score=60.77 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
..+.+|+||+||||||+..+|.-.||..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 3488999999999999999999888764
No 268
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.00 E-value=0.011 Score=74.34 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+++|+|||||||||+|.+|.+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5999999999999999999843
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.99 E-value=0.0028 Score=62.76 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=35.2
Q ss_pred cccCchhhHHHHH-HHHHHhhcccCCCCeEEeec--cccccchhhHHHHHHHHHhc
Q 036401 1057 MEQLSGGEKTVAA-LALLFSIHSYKPSPFFILDE--VDAALDNLNVAKVAGFIRSK 1109 (1154)
Q Consensus 1057 ~~~lSgGek~~~~-la~~~a~~~~~p~~~~~lDE--~d~~lD~~~~~~~~~~l~~~ 1109 (1154)
...+||||+..+. |+. +|.....+|+++|||| |+..+|+.....+.+++...
T Consensus 81 ~~~ls~~er~~~~~l~~-~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRN-ADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp EECHHHHHTTTTTTTCC-CCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred EEcchHHHHHHHHHHhh-hhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 4469999996542 221 1111256799999999 67678888777777777644
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.94 E-value=0.015 Score=56.47 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
++++|+||+||||||++.+|.-.|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 588999999999999999988665
No 271
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.93 E-value=0.013 Score=62.64 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
++|+||||||||+++.||+..++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 78999999999999999998875
No 272
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.87 E-value=0.018 Score=58.40 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=15.1
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
.++|+|||||||||++.+|+
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57788888888888877753
No 273
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.85 E-value=0.015 Score=57.02 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
..+|+||+|||||||..+|.-.||..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46799999999999999999888754
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.81 E-value=0.012 Score=64.77 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++-.|+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999998887654
No 275
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.77 E-value=0.008 Score=61.06 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=43.1
Q ss_pred ccccCchhhHHH-HHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccC
Q 036401 1056 DMEQLSGGEKTV-AALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCE 1112 (1154)
Q Consensus 1056 ~~~~lSgGek~~-~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~ 1112 (1154)
.+..+|||++++ +..+..++.. +++.++|||++++|+.++..+++.|.++..+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLA----FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGG----GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCchhHHHHHHHHHHHHHh----cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 355799999998 6677766654 5677899999999999999999999988533
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.76 E-value=0.016 Score=60.65 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||+||||||+..+|+--+|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5689999999999999999877774
No 277
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.75 E-value=0.014 Score=64.30 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.++++|+||+||||||++.+|.-.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998654
No 278
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.74 E-value=0.011 Score=63.81 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
.++.+|+||+|+||||++.+|+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35899999999999999999863
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.69 E-value=0.017 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.-.||..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 67899999999999999998877753
No 280
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.66 E-value=0.018 Score=58.69 Aligned_cols=26 Identities=38% Similarity=0.675 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||+||||||+..+|.--||..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 78899999999999999998877754
No 281
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.61 E-value=0.051 Score=55.93 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=40.2
Q ss_pred cCCCCeEEeeccccccchhh------------HHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe----chhHH-Hhc
Q 036401 1079 YKPSPFFILDEVDAALDNLN------------VAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL----KDSFY-DKA 1141 (1154)
Q Consensus 1079 ~~p~~~~~lDE~d~~lD~~~------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~----~~~~~-~~~ 1141 (1154)
...|++++||||++++|+.. ...++..|..+.+ ..+..+|+||| ....+ ..|
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~-----------~~g~tvi~vtH~~~~~g~~~~~~~ 191 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN-----------LYDIAVFVTNQVQANGGHILAHSA 191 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHH-----------HHTCEEEEEEECC---------CC
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHH-----------HCCCeEEEEeecccCcchhhHhhc
Confidence 45689999999999999842 2366677776631 13667999999 43334 478
Q ss_pred cceEEEee
Q 036401 1142 EALVGVYR 1149 (1154)
Q Consensus 1142 d~~~GV~~ 1149 (1154)
|.++-+..
T Consensus 192 d~~l~l~~ 199 (231)
T 4a74_A 192 TLRVYLRK 199 (231)
T ss_dssp SEEEEEEE
T ss_pred eEEEEEEe
Confidence 99877665
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.59 E-value=0.019 Score=61.16 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+++|+||+||||||+...|.-.|+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 8999999999999999999888764
No 283
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.58 E-value=0.02 Score=56.77 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||+||||||+...|.--||.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6789999999999999999866764
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.50 E-value=0.019 Score=56.26 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+|+||.|||||||+.+|+--+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 35799999999999999986543
No 285
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.45 E-value=0.018 Score=55.75 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
..+|+||+|+|||||+.+++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999985
No 286
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.42 E-value=9 Score=48.33 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=6.1
Q ss_pred eeEEEEecceecc
Q 036401 10 IHRLELENFKSYK 22 (1154)
Q Consensus 10 i~~l~l~nFks~~ 22 (1154)
|-=|.|.||=+|.
T Consensus 433 IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 433 IGVLDIYGFETFE 445 (1080)
T ss_dssp EEEEEECCCCCCS
T ss_pred EEeeccCCccccC
Confidence 3334555555443
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.33 E-value=0.024 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||.||||||+..+| --+|..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 36789999999999999999 666654
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.30 E-value=0.027 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||.||||||+..+|.-.||.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 37889999999999999999877764
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.28 E-value=0.00082 Score=71.71 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=40.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||+| |++|+ ++||++| |++||+.+...+. . +||+..
T Consensus 198 g~~LSgGqkQR---ARAll----~~p~iLl----Ts~LD~~~~~~i~----~----------------------ltH~~~ 240 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQI----KAPPLLV----TSNIDVQAEDRYL----Y----------------------LHSRVQ 240 (305)
T ss_dssp TCCEECCCSSC---CCCEE----CCCCEEE----EESSCSTTCGGGG----G----------------------GTTTEE
T ss_pred ccCcCHHHHHH---HHHHh----CCCCEEE----ECCCCHHHHHHHH----H----------------------HhCCHH
Confidence 67999999999 55444 4599999 9999998876653 1 267777
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ .+++|+
T Consensus 241 ~~~~aD~i---vl~~G~ 254 (305)
T 2v9p_A 241 TFRFEQPC---TDESGE 254 (305)
T ss_dssp EEECCCCC---CCC---
T ss_pred HHHhCCEE---EEeCCE
Confidence 77788887 355554
No 290
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.27 E-value=0.022 Score=59.44 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..+++|+||||||||+++-.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999977665543
No 291
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.24 E-value=0.025 Score=57.81 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||+||||||+...|.- +|.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCC
Confidence 788999999999999999976 764
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.24 E-value=0.024 Score=56.19 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+|++||||||+..+|.-.|+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 38899999999999999999887754
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.22 E-value=0.028 Score=53.92 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
++.+|+||.||||||++.+|.-.|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4788999999999999999987774
No 294
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.18 E-value=0.032 Score=57.28 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|.+|.||+||||||++..|.-.|+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 8899999999999999999988864
No 295
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.12 E-value=0.026 Score=61.02 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++..|...+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999988774
No 296
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.07 E-value=0.016 Score=67.51 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+++|+||||||||||+.+|.-.|+..
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHHhhccc
Confidence 88999999999999999999888643
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.05 E-value=0.021 Score=56.23 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=36.5
Q ss_pred CCCeEEeecccc-ccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1081 PSPFFILDEVDA-ALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1081 p~~~~~lDE~d~-~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.|+++|||||++ ++|+.....+..+|.... ..+..+|++||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRY------------NNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCC
Confidence 589999999996 899999999999998873 2466799999974
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.03 E-value=0.026 Score=62.97 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 29 PFSDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 29 ~~~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+...+++|+|||||||||++-.|+...
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
No 299
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.96 E-value=0.028 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+.+|+||+||||||+...|.-.|+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3889999999999999999987775
No 300
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.84 E-value=0.026 Score=55.04 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+|++|+|||||+.+++
T Consensus 6 ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999986
No 301
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.83 E-value=0.038 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||.|||||||..+|.-.||.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 37789999999999999999988874
No 302
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.82 E-value=0.01 Score=67.23 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=50.1
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCC--CCCe-----eEE
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADE--GNGF-----QSI 1129 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~--~~~~-----q~i 1129 (1154)
+..||||+ ++++|| +..||+ +++||+.....+.+++..+.+ . ..++ .++
T Consensus 256 l~~lS~g~-qrvslA-------l~~p~~------t~glD~~~~~~l~~ll~r~~~----------~~~~~GsiT~~~tVl 311 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA-------IGEPPA------TKGYPPSVFAKLPALVERAGN----------GIHGGGSITAFYTVL 311 (438)
T ss_dssp HHHHHHHH-HHHHHH-------TTCCCC------SSSCCTTHHHHHHHHHTTCSC----------CSTTSCEEEEEEEEE
T ss_pred HHHHHHHH-HHHHHH-------hCCCcc------cccCCHHHHHHHHHHHHHHHh----------ccCCCCcccceeEEE
Confidence 66899999 889888 334787 999999999999999999821 0 1243 789
Q ss_pred EEEechhHHHhccceE
Q 036401 1130 VISLKDSFYDKAEALV 1145 (1154)
Q Consensus 1130 ~it~~~~~~~~~d~~~ 1145 (1154)
++||+.. ...||.++
T Consensus 312 v~tHdl~-~~iad~v~ 326 (438)
T 2dpy_A 312 TEGDDQQ-DPIADSAR 326 (438)
T ss_dssp CSSSCSC-CHHHHHHH
T ss_pred EeCCCcc-chhhceEE
Confidence 9999976 56777774
No 303
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.75 E-value=0.035 Score=61.01 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHHhhccc----CCCCeEEeeccccccchhh------------HHHHHHHHHhcccCCCCCCCCCCCCC
Q 036401 1061 SGGEKTVAALALLFSIHSY----KPSPFFILDEVDAALDNLN------------VAKVAGFIRSKSCEGTRGNQDADEGN 1124 (1154)
Q Consensus 1061 SgGek~~~~la~~~a~~~~----~p~~~~~lDE~d~~lD~~~------------~~~~~~~l~~~~~~~~~~~~~a~~~~ 1124 (1154)
|+++.+++.++..+.- .+ .+|+++|+|||++++|+.. ...++..|..+.+ ..
T Consensus 208 ~~~~~~~l~~~~~~~~-~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~-----------~~ 275 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIK-ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN-----------LY 275 (349)
T ss_dssp HHHHHHHHHHHHHHHH-HSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHH-----------HT
T ss_pred hHHHHHHHHHHHHHHH-HhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHH-----------Hc
Confidence 6777887777665542 12 4699999999999999863 4566666666621 13
Q ss_pred CeeEEEEEechh
Q 036401 1125 GFQSIVISLKDS 1136 (1154)
Q Consensus 1125 ~~q~i~it~~~~ 1136 (1154)
+..+|+|+|...
T Consensus 276 ~~tvii~~h~~~ 287 (349)
T 1pzn_A 276 DIAVFVTNQVQA 287 (349)
T ss_dssp TCEEEEEEECC-
T ss_pred CcEEEEEccccc
Confidence 667999999743
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.75 E-value=0.039 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||.||||||+..+|.-.||..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 467799999999999999999888764
No 305
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.75 E-value=0.031 Score=61.87 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
...+||||||+||||++.+|+-
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3789999999999999999875
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.73 E-value=0.037 Score=55.77 Aligned_cols=26 Identities=46% Similarity=0.535 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.--||..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 57899999999999999999888753
No 307
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.72 E-value=0.027 Score=58.94 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||+||||||+..+|.--+|.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 37889999999999999999887763
No 308
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.68 E-value=0.031 Score=55.42 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+||+|+|||||+.+++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56899999999999999985
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.65 E-value=0.044 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH-hCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFV-LGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~-lg~ 57 (1154)
...+|+||.||||||+..+|.-. +|.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 37789999999999999999887 564
No 310
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.63 E-value=0.047 Score=57.38 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
-.+|+||+|||||+++.||.-.++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 46799999999999999999888753
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.63 E-value=0.035 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHH-HhC
Q 036401 33 FTAIIGPNGAGKSNLMDAISF-VLG 56 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~-~lg 56 (1154)
+.+|+||.||||||+..+|.- .+|
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCC
Confidence 678999999999999999886 444
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.55 E-value=0.036 Score=55.12 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+...|.--||.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7889999999999999999988873
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.53 E-value=0.043 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||.||||||+..+|.-.+|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 367799999999999999998888753
No 314
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.52 E-value=0.037 Score=59.16 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++..|+..+-
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3889999999999999999998874
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.46 E-value=0.034 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+|+.||||||+...|.-.||..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 78899999999999999998777753
No 316
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.44 E-value=0.034 Score=60.67 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+|||||||||++-+++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999887653
No 317
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.42 E-value=0.047 Score=55.16 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+..+|.--||..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 78899999999999999998878753
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.40 E-value=0.0024 Score=68.90 Aligned_cols=38 Identities=11% Similarity=-0.047 Sum_probs=32.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccch
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDN 1096 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~ 1096 (1154)
..+..||||+++++++|.+++. +|+++|||||++++|+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~----~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVR----HPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEEC----SCSEEEEECTTTTCCC
T ss_pred CCcccCChhhhhhhhhHHHhcc----CCCEEEECCccccCCc
Confidence 4567999999999998776554 4999999999999985
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.34 E-value=0.039 Score=58.80 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+.+|+||+||||||+..+|.--+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88899999999999999997666
No 320
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.30 E-value=0.034 Score=54.93 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+||+|||||||+.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999865
No 321
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.29 E-value=0.042 Score=60.31 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+++|+||||+||||++.+|+..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998776
No 322
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.25 E-value=0.043 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
++.+|+||+|||||+|..+|+-.+++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 47789999999999999999887765
No 323
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.23 E-value=0.047 Score=60.63 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 036401 34 TAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+|+|||||||||++.+|+-.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999854
No 324
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.21 E-value=0.014 Score=64.01 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=51.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCe-----eEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGF-----QSI 1129 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~-----q~i 1129 (1154)
.++..||||+ +++++| +.. ||+ ++|||+.....+.+++..+.+ ...++ .++
T Consensus 167 d~~~~lS~g~-r~v~la---l~~----p~~------t~Gldp~~~~~l~~ller~~~----------~~~GsiT~~~tVl 222 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGE----PDV------RGGFPPSVFSSLPKLLERAGP----------APKGSITAIYTVL 222 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTC----CCC------BTTBCHHHHHHHHHHHTTCEE----------CSSSEEEEEEEEE
T ss_pred hhHHHHHHHH-HHHHHH---cCC----CCc------ccCCCHHHHHHHHHHHHHHhC----------CCCCCeeeEEEEE
Confidence 3578999999 788888 233 666 999999999999999999831 02355 789
Q ss_pred EEEechhHHHhccceEE
Q 036401 1130 VISLKDSFYDKAEALVG 1146 (1154)
Q Consensus 1130 ~it~~~~~~~~~d~~~G 1146 (1154)
++||+.. ...||++++
T Consensus 223 ~~thdl~-~~i~d~v~~ 238 (347)
T 2obl_A 223 LESDNVN-DPIGDEVRS 238 (347)
T ss_dssp CCSSCCC-CHHHHHHHH
T ss_pred EeCCCCC-ChhhhheEE
Confidence 9999966 557888754
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.16 E-value=0.051 Score=54.24 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||.||||||+...|.-.||..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 488899999999999999998777753
No 326
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.14 E-value=0.052 Score=57.28 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+.+|+||+|||||+|..+|.-.+++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 347889999999999999999887765
No 327
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.13 E-value=0.047 Score=64.06 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCccccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRTGQ 61 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~~~ 61 (1154)
++++|+||||||||+++.+|.-.++.....
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 488999999999999999999998765433
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.10 E-value=0.053 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+...|.-.+|.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7889999999999999999877774
No 329
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.08 E-value=0.044 Score=61.44 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+.+|+|||||||||++..|+..|-
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998773
No 330
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.07 E-value=0.064 Score=59.49 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1080 KPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1080 ~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
.+++++||||||+ ||+.....+.++|.+. . .+..||++||+..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~------------~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKY------------S-KNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHS------------T-TTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhh------------c-CCCEEEEEeCCHH
Confidence 3588999999999 9999999999999988 3 5789999999853
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.07 E-value=0.053 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
|.+|+||.||||||+...|.-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998877
No 332
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.76 E-value=0.024 Score=57.61 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||++..|.-.|+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999877753
No 333
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.68 E-value=0.054 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+..+|.-.||.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999988874
No 334
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.68 E-value=0.064 Score=52.22 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.-.||..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 67899999999999999998888753
No 335
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.63 E-value=5.8 Score=36.04 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=34.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036401 657 SGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLER 721 (1154)
Q Consensus 657 ~~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~ 721 (1154)
..++-.++.+...+..++..+...+..++.++..++..++.+..++..+..++..++.++..++.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555444444444443
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.59 E-value=0.068 Score=54.62 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||.||||||+...|.--||.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37789999999999999999888875
No 337
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.52 E-value=0.071 Score=52.56 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
++.+|+||.||||||+-.+|.--||..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 367899999999999999998888754
No 338
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.40 E-value=0.075 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+...|.--||.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4679999999999999999877764
No 339
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.40 E-value=0.076 Score=56.78 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||+||||||+..+|.-.+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36789999999999999999888874
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.38 E-value=0.09 Score=52.70 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.5
Q ss_pred CCC-eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 30 FSD-FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 30 ~~~-~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
..+ +.+|+||.||||||+...|.--||..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 335 88899999999999999998877754
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.37 E-value=0.063 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
+.+|+||.||||||+...|.-.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7889999999999999998765
No 342
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.36 E-value=0.073 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||+||||||+..+|.-.||.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCC
Confidence 6789999999999999999988874
No 343
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.31 E-value=0.044 Score=61.38 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~ 52 (1154)
..++|||||||||||+|.+|+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 378999999999999999875
No 344
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.18 E-value=0.052 Score=58.60 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHH
Q 036401 29 PFSDFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 29 ~~~~~~~IvG~NGsGKS~ildAi~ 52 (1154)
|.+||.+|+|+.|+||||++.+|.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 345799999999999999999975
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.17 E-value=0.083 Score=52.82 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||.||||||+...|.--||..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 488999999999999999998877743
No 346
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.11 E-value=0.089 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
...+|+||+|+|||+++.||+-.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999987743
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.10 E-value=0.1 Score=57.25 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=39.9
Q ss_pred HHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEE
Q 036401 1069 ALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVG 1146 (1154)
Q Consensus 1069 ~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~G 1146 (1154)
+||.+|... |++++||||+ |+..... +..+. ..+..+|++||..+....+|+++.
T Consensus 188 ~La~aL~~~----PdvillDEp~---d~e~~~~----~~~~~------------~~G~~vl~t~H~~~~~~~~dRli~ 242 (356)
T 3jvv_A 188 ALRSALRED----PDIILVGEMR---DLETIRL----ALTAA------------ETGHLVFGTLHTTSAAKTIDRVVD 242 (356)
T ss_dssp HHHHHTTSC----CSEEEESCCC---SHHHHHH----HHHHH------------HTTCEEEEEESCSSHHHHHHHHHH
T ss_pred HHHHHhhhC----cCEEecCCCC---CHHHHHH----HHHHH------------hcCCEEEEEEccChHHHHHHHHhh
Confidence 677777666 9999999999 6554333 33331 135669999999888888998853
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.08 E-value=0.08 Score=52.63 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||.||||||+...|.--||.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37789999999999999999877774
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.08 E-value=0.091 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+|+.||||||+...|.-.||..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45799999999999999998888754
No 350
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.06 E-value=0.084 Score=54.67 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+..+|+||.|||||+++.+|.-.++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4577899999999999999998877643
No 351
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.06 E-value=0.066 Score=59.05 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
+++|+|||||||||++.+|+
T Consensus 181 ~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999976
No 352
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.05 E-value=0.067 Score=57.09 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+++|+|||||||||++..|...+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999999998874
No 353
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.04 E-value=0.08 Score=54.30 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||.||||||+...|.--||..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 378899999999999999998777753
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.03 E-value=0.086 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+...|.--+|.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 7889999999999999999877775
No 355
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.99 E-value=0.031 Score=58.27 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=39.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||||+++++++ . ..+.||+++||||||.++|+. +..+ .+..++++||.
T Consensus 112 ~~~~~ls~g~~~r~~~----~-~~~~~~~~lilDg~~~~~~~~--------l~~~--------------~~~~i~v~th~ 164 (245)
T 2jeo_A 112 VEVPTYDFVTHSRLPE----T-TVVYPADVVLFEGILVFYSQE--------IRDM--------------FHLRLFVDTDS 164 (245)
T ss_dssp EEECCEETTTTEECSS----C-EEECCCSEEEEECTTTTTSHH--------HHTT--------------CSEEEEEECCH
T ss_pred eecccccccccCccCc----e-EEecCCCEEEEeCccccccHH--------HHHh--------------cCeEEEEECCH
Confidence 4567899999998865 1 234578999999999998863 3344 25669999997
Q ss_pred h
Q 036401 1135 D 1135 (1154)
Q Consensus 1135 ~ 1135 (1154)
.
T Consensus 165 ~ 165 (245)
T 2jeo_A 165 D 165 (245)
T ss_dssp H
T ss_pred H
Confidence 4
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.97 E-value=0.089 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.-.||..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 77899999999999999998887753
No 357
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.95 E-value=0.078 Score=59.32 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+++|+|||||||||++..|+..+..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 48899999999999999999988854
No 358
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.94 E-value=0.088 Score=57.92 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+++||+|||||+++.+|+-.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999988754
No 359
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.91 E-value=0.1 Score=56.25 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
...+|+||+|||||++..||.-.++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 467899999999999999999888743
No 360
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.90 E-value=0.092 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
..++|+||+|||||+++-.+.+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5889999999999998776554
No 361
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.89 E-value=0.076 Score=55.02 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+|++|+||||++.+|+
T Consensus 31 ~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 45799999999999999976
No 362
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.89 E-value=0.075 Score=57.32 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
..+|+||+||||||+..+|+-.||.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4789999999999999998887764
No 363
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.73 E-value=0.1 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+|+-||||||+...+.-.+|..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 66799999999999999998877754
No 364
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.71 E-value=0.098 Score=51.38 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 29 PFSDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 29 ~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
|..+..+|.||.|+|||++..||+-.++++.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3345678999999999999999988887654
No 365
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.49 E-value=0.08 Score=56.01 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+||+||||||++.+|+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999984
No 366
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.48 E-value=0.11 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+...|. .+|.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCC
Confidence 78999999999999999998 5764
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.41 E-value=0.11 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.-.||..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCce
Confidence 77899999999999999998888753
No 368
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.41 E-value=0.098 Score=57.99 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q 036401 30 FSDFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 30 ~~~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
.-+..+|||++||||||++.+|+-
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999875
No 369
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.41 E-value=0.11 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+.+|+||.||||||+...|.--|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999998766
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.37 E-value=0.11 Score=54.46 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+.+|+||.||||||+..+|.-.|
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378899999999999999998763
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.27 E-value=0.099 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
-.+|+|+.||||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998653
No 372
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.24 E-value=0.12 Score=51.84 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+.+|+||.||||||+...|.-.|
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998877
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.24 E-value=0.12 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+|+||.||||||+...|.--+|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 5699999999999999997777753
No 374
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.21 E-value=0.11 Score=57.02 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
..++.|+|||||||||+.-.++..+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999987766543
No 375
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.19 E-value=0.091 Score=60.01 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+||||||||||||+.+|+
T Consensus 182 kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999875
No 376
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.13 E-value=0.1 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
++|+||||||||+++.||+..++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998776
No 377
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.10 E-value=0.11 Score=58.31 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+.++|+||+|||||+++..|...+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999999998877554
No 378
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.09 E-value=0.013 Score=63.18 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=40.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccc-cchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAA-LDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~-lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
..+..+|||+|+++++|.++ .+++||||+++ ||+... ++++.+. ...+.-+|+.+|
T Consensus 109 ~~~~~~sgg~rqrv~~ara~--------~ll~ldePt~~~Ld~~~~----~~l~~l~-----------~~~~iilV~~K~ 165 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVH--------CCFYFISPFGHGLKPLDV----AFMKAIH-----------NKVNIVPVIAKA 165 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCC--------EEEEEECSSSSSCCHHHH----HHHHHHT-----------TTSCEEEEECCG
T ss_pred HHHHHhCHHhhhhhhhhhhh--------heeeeecCcccCCCHHHH----HHHHHHH-----------hcCCEEEEEEeC
Confidence 45778999999987665544 28999999985 999874 5666662 112455666678
Q ss_pred ch
Q 036401 1134 KD 1135 (1154)
Q Consensus 1134 ~~ 1135 (1154)
+.
T Consensus 166 Dl 167 (301)
T 2qnr_A 166 DT 167 (301)
T ss_dssp GG
T ss_pred CC
Confidence 74
No 379
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.07 E-value=0.078 Score=60.86 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=27.5
Q ss_pred cceeccCceeecCCCC-eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 17 NFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 17 nFks~~~~~~i~~~~~-~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
||..+.... -|+.+| +++|+||+|+|||+++-.|+..+
T Consensus 189 G~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 189 GFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 555555433 244444 99999999999999988877654
No 380
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.04 E-value=0.11 Score=57.04 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
++.+|+||+|||||+|..+|.-.+++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 47789999999999999999888875
No 381
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.98 E-value=0.11 Score=58.08 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
.+.+|+||+||||||++..|+..|-
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH
Confidence 4889999999999999999988773
No 382
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.92 E-value=4.1 Score=48.45 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 036401 349 IQDLTGKLEE 358 (1154)
Q Consensus 349 l~~l~~~~~~ 358 (1154)
+.....++..
T Consensus 479 l~~~~~~i~~ 488 (597)
T 3oja_B 479 LQGLHAEIDT 488 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 3333333333
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.92 E-value=0.11 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||.||||||+...|.-.||.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 37889999999999999999876654
No 384
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.83 E-value=0.092 Score=57.99 Aligned_cols=18 Identities=33% Similarity=0.772 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAI 51 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi 51 (1154)
.+||||+|+||||++.+|
T Consensus 40 I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSL 57 (361)
T ss_dssp EEECCCTTSCHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 479999999999999997
No 385
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.81 E-value=0.12 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.069 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
....+|+||.|||||++.-++.--++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 34788999999999999877654443
No 386
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.80 E-value=0.16 Score=54.66 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
...+|+||+|||||++..||+-.+|..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 467899999999999999999888754
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.79 E-value=0.16 Score=49.12 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
+.+|+|+-||||||+...|.--||...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 667999999999999999988888643
No 388
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.75 E-value=2.1 Score=51.01 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 036401 324 SKKELERKREERRKHANDIKELQKGIQDLTGKLEELN 360 (1154)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~ 360 (1154)
++++...++..++..++.+.+++++...+..++.++.
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444443333
No 389
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=90.75 E-value=0.11 Score=57.30 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
.++|||+||+||||++.+|+
T Consensus 24 kvgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999986
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.66 E-value=0.14 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+|+||.||||||+...|.--+|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 5689999999999999997777653
No 391
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.64 E-value=0.14 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.-.||..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 78899999999999999998888854
No 392
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.58 E-value=0.13 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+...|.-.||.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7889999999999999999876653
No 393
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.58 E-value=0.11 Score=49.07 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCee-EEEEEec
Q 036401 1081 PSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQ-SIVISLK 1134 (1154)
Q Consensus 1081 p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q-~i~it~~ 1134 (1154)
.++++|||||++ +|+.....++.+|..+. ..+.+ +|++||.
T Consensus 83 ~~~lLilDE~~~-~~~~~~~~l~~li~~~~------------~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEK-LGNEEQALLFSIFNRFR------------NSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTC-CCSHHHHHHHHHHHHHH------------HHTCCEEEEEESS
T ss_pred CCCEEEEeCccc-cChHHHHHHHHHHHHHH------------HcCCcEEEEECCC
Confidence 489999999998 66666888999998873 23455 6776764
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.54 E-value=0.11 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||.|||||+|.-+|.-.||+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 37889999999999999999888875
No 395
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.39 E-value=0.13 Score=49.39 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.||||||++.++.-
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 46999999999999999864
No 396
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.38 E-value=0.14 Score=48.90 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999874
No 397
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.37 E-value=0.12 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~ 53 (1154)
-.+|+|++|+|||+++.+++-
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999998764
No 398
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.36 E-value=0.17 Score=49.97 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+..+|+||.|+|||+++.++...+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999887743
No 399
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.34 E-value=0.12 Score=50.72 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+|++|+|||+++.+++
T Consensus 18 ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56899999999999999864
No 400
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.29 E-value=0.13 Score=55.22 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~ 52 (1154)
++.+|||+.|+|||||+.+|+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999986
No 401
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.27 E-value=0.17 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+..+|+||.|+|||+++.++.-.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47889999999999999999877754
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.25 E-value=0.14 Score=54.02 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
..+|+|++|||||||+.+++
T Consensus 5 kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999985
No 403
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.22 E-value=0.15 Score=56.45 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~ 52 (1154)
..++|+|+||+||||++.+++
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999874
No 404
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.19 E-value=0.19 Score=56.48 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
..+|+||+|+|||+++.+++-.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999999999999998876643
No 405
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.12 E-value=0.16 Score=52.01 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|.+|.||.||||||++..|.-.|+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999877743
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.10 E-value=0.16 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 34 TAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+|+||.||||||+...|.-.+|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 479999999999999999877764
No 407
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.95 E-value=0.15 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
-.+|+|+.||||||++.+++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3579999999999999998653
No 408
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.93 E-value=0.16 Score=48.77 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+||||++.++..
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47999999999999998764
No 409
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.92 E-value=0.16 Score=49.02 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|||||+++.++.-
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999763
No 410
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.89 E-value=0.18 Score=51.34 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.-.+|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 67899999999999999998888753
No 411
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.88 E-value=0.15 Score=60.73 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
..++|+|||||||||++.+|.-.++..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 478999999999999999999988654
No 412
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.86 E-value=0.16 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.++..
T Consensus 9 i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 46999999999999999754
No 413
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.83 E-value=0.16 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~ 54 (1154)
.+|+|+.|+||||++.++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 469999999999999997643
No 414
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.77 E-value=0.18 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.++|+|+.||||||++.++...++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 47889999999999999999887654
No 415
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.72 E-value=0.0022 Score=65.48 Aligned_cols=64 Identities=6% Similarity=-0.022 Sum_probs=45.8
Q ss_pred ccccCchhhH----HHHHHHHHHhhcccCCCCeEEeeccccc-------cchhhHHHHHHHHHhcccCCCCCCCCCCCCC
Q 036401 1056 DMEQLSGGEK----TVAALALLFSIHSYKPSPFFILDEVDAA-------LDNLNVAKVAGFIRSKSCEGTRGNQDADEGN 1124 (1154)
Q Consensus 1056 ~~~~lSgGek----~~~~la~~~a~~~~~p~~~~~lDE~d~~-------lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 1124 (1154)
++..+|+|++ ++++++.++.+. +|++++|||+++ ||+.....+...+..... ..
T Consensus 86 ~~~~~s~g~~~~~~~~~~~~~~li~~----~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~-----------~~ 150 (211)
T 3asz_A 86 PVYDFRAYTRSPRRTPVRPAPVVILE----GILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVL-----------ER 150 (211)
T ss_dssp CCEETTTTEECSSCEEECCCSEEEEE----STTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHH-----------HS
T ss_pred CcccCcccCCCCCeEEeCCCcEEEEe----ehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHH-----------Hh
Confidence 3456888864 455555555555 899999999999 999999888888876411 12
Q ss_pred CeeEEEEEec
Q 036401 1125 GFQSIVISLK 1134 (1154)
Q Consensus 1125 ~~q~i~it~~ 1134 (1154)
+..+++++|+
T Consensus 151 g~t~~~~~~~ 160 (211)
T 3asz_A 151 GRSLEGVVAQ 160 (211)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4457888887
No 416
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.70 E-value=0.11 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+|++|+||||++.+++
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56799999999999998864
No 417
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.69 E-value=0.15 Score=49.07 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.++..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 47999999999999999863
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.69 E-value=0.18 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+...|.--||..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCce
Confidence 67899999999999999998888753
No 419
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.66 E-value=0.19 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+..+|+||+|+|||+++.+|.-.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 466799999999999999999877
No 420
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.63 E-value=0.17 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+++.+|+||+|+|||+++.++.-.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588899999999999999988766
No 421
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.61 E-value=0.11 Score=55.44 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+.+|.||.||||||+...|.-.||
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 788999999999999999988776
No 422
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.60 E-value=0.17 Score=49.04 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+|||+|+.+++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 5799999999999999875
No 423
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.60 E-value=0.17 Score=48.80 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+||||++.++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999876
No 424
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.59 E-value=0.17 Score=49.18 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.||||||++.++..
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999864
No 425
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.58 E-value=0.17 Score=48.56 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.||||||++.++..
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999764
No 426
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.56 E-value=0.23 Score=53.04 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
..++.||.|||||++..||+-.+|...-
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i 65 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPI 65 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5668899999999999999999986543
No 427
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.54 E-value=0.13 Score=51.35 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+||+|+|||+|+.+++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56899999999999999864
No 428
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.54 E-value=0.16 Score=57.16 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.+.+|+||+||||||++.+|...+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998876
No 429
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.53 E-value=0.17 Score=48.51 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.++.-
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999874
No 430
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.52 E-value=0.16 Score=48.57 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.||||||++.++..
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999864
No 431
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.50 E-value=0.17 Score=48.67 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+|||+++.+++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999975
No 432
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.40 E-value=0.19 Score=49.41 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+..+|+||.|+|||+++.++...+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346689999999999999999887743
No 433
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.33 E-value=0.18 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~ 53 (1154)
-.+|+|+.|+|||+++.+++.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999854
No 434
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.30 E-value=0.24 Score=52.82 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
+-.+|+||.|||||++..||+-.+|...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~~~~ 79 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETNATF 79 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 4578999999999999999998887643
No 435
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.30 E-value=0.23 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 30 FSDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 30 ~~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
...+++++|+-|+||||++..|.+.|.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998886
No 436
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.29 E-value=0.24 Score=48.21 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~ 53 (1154)
.-.+|+|+.||||||++.+++.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999863
No 437
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.23 E-value=0.21 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
..+|+||+|||||++..+|.-.++..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 67899999999999999999888543
No 438
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.13 E-value=0.18 Score=55.45 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~ 54 (1154)
++|||++||||||++.+|+-.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999999865
No 439
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.07 E-value=0.2 Score=48.28 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.+++-
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999764
No 440
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.06 E-value=0.22 Score=50.17 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|.+|.||.||||||++..|.-.|+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999877754
No 441
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.06 E-value=0.19 Score=49.74 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+|+.+++.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 47999999999999998765
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.04 E-value=0.23 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
+.+|+||.||||||+..+|.--||..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 77899999999999999998888753
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.00 E-value=0.2 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
+.+|+||.||||||+..+|.--
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6789999999999999998764
No 444
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.98 E-value=0.31 Score=48.19 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+|+.||||||++.++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999875
No 445
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.97 E-value=0.19 Score=48.95 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.||||||++.++.
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999874
No 446
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.93 E-value=0.19 Score=48.95 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|||||+++.+++.
T Consensus 17 i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57999999999999999863
No 447
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.92 E-value=0.28 Score=48.60 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~ 52 (1154)
-.+|+|+.|+||||++.++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56899999999999999975
No 448
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.84 E-value=0.29 Score=51.26 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
+-.+|+||.|||||++..||+-.+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~~ 67 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVPF 67 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3567999999999999999999887654
No 449
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.83 E-value=0.25 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
.++.|+||+|||||++.-.|+..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 39999999999999998887764
No 450
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.80 E-value=0.22 Score=46.67 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
-.+|+||.|||||++..||....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 45799999999999999987654
No 451
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.78 E-value=0.18 Score=49.71 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+||||++.+++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4799999999999999875
No 452
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.76 E-value=0.21 Score=47.74 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~ 54 (1154)
.+|+|+.|+|||+++.+++..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999998754
No 453
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=88.75 E-value=14 Score=33.87 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHhhhchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchh
Q 036401 296 RNNRLDKSQPELLKLNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDT 375 (1154)
Q Consensus 296 ~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 375 (1154)
++..+.-+..++.....++.....++..+.+..+........+...-..-...+..+..++.....
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~-------------- 66 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH-------------- 66 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH--------------
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 036401 376 QLTEYFQIKEEAGMKTAKLRDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELT 455 (1154)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 455 (1154)
........+....+.+.-+...+.....+.......+..+..++......+..++..-......-.
T Consensus 67 --------------~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~ 132 (147)
T 2b9c_A 67 --------------IAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNY 132 (147)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred --------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 036401 456 KLKKELRSM 464 (1154)
Q Consensus 456 ~~~~~l~~l 464 (1154)
....+|..+
T Consensus 133 ~yee~I~~L 141 (147)
T 2b9c_A 133 HLENEVARL 141 (147)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
No 454
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.70 E-value=0.22 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
=.+|+|+.|+|||+|+..++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999887643
No 455
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.70 E-value=0.2 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
-.+|+|+.|+||||++.++...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3579999999999999997653
No 456
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.65 E-value=0.24 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
..++|+|+.|+||||++.+|...+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998873
No 457
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.60 E-value=0.24 Score=56.41 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
-.+|+||+|||||+++.||+--+|..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 36799999999999999999877654
No 458
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.57 E-value=0.23 Score=56.56 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+..+|+||+|+|||+++.||...+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4667999999999999999998773
No 459
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.54 E-value=0.2 Score=48.09 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+|||+++.+++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 4799999999999999874
No 460
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.52 E-value=0.22 Score=48.93 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+||||++.++..
T Consensus 7 i~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999874
No 461
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.50 E-value=0.22 Score=49.24 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~ 53 (1154)
-.+|+|+.|+|||+|+.+++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999865
No 462
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.50 E-value=0.38 Score=49.67 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=28.4
Q ss_pred CCCCeEEeeccccccchh-------h-----HHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1080 KPSPFFILDEVDAALDNL-------N-----VAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1080 ~p~~~~~lDE~d~~lD~~-------~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+|+++|+|||++.+|+. . ...++..|..+.+ ..+..+|+|+|.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~-----------~~~~tvi~~~h~ 173 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLAD-----------EFGVAVVITNQV 173 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHH-----------HHCCEEEEEC--
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH-----------HcCCEEEEEeee
Confidence 468999999999999975 2 3455555665521 135679999995
No 463
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.50 E-value=0.23 Score=48.33 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.+++.
T Consensus 9 i~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 57999999999999999763
No 464
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.46 E-value=0.22 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
.-.+|+||.|+||||++.+++-..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999987544
No 465
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.43 E-value=0.27 Score=50.83 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
+.+|+||.||||||+...|.--+|.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7789999999999999999766664
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.42 E-value=0.23 Score=61.29 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
...+|+||+|||||+++.||+-.++..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 367899999999999999998777643
No 467
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.38 E-value=0.26 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|.+|.|+.||||||+...|.-.|+.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999877765
No 468
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.32 E-value=0.27 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|.+|.||.||||||++..|.-.|..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999877743
No 469
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.31 E-value=0.31 Score=48.97 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
.+.+|+||.||||+|+-.-|+--+|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 377899999999999999998888764
No 470
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.25 E-value=0.22 Score=48.87 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~ 53 (1154)
-.+|+|+.|+|||+++.++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999998764
No 471
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.22 E-value=0.24 Score=48.90 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~~ 54 (1154)
.+|+|+.||||||++.+++..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 479999999999999998743
No 472
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.21 E-value=0.24 Score=48.16 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
-.+|+|+.|+|||+++.+++-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3569999999999999998643
No 473
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.14 E-value=0.25 Score=56.55 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+..+|+|++|||||+++.+|...|
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 577899999999999999988765
No 474
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.11 E-value=0.21 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 33 FTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
|.+|.||.||||||++..|.-.|+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999877743
No 475
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.11 E-value=0.23 Score=48.78 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|||||+++.+++.
T Consensus 13 i~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999764
No 476
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.09 E-value=0.25 Score=48.40 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~ 53 (1154)
-.+|+|+.|+|||+++.++.-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 347999999999999999873
No 477
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.03 E-value=0.017 Score=61.47 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=30.6
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchh
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNL 1097 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~ 1097 (1154)
....+||||++++++|...++ |||++|||||++++|+.
T Consensus 131 y~~~~sgGq~~R~~~a~~~~~----~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 131 YDKSQFKGEGDRCPTGQKIKL----PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp EETTHHHHTCEECSSCEEEES----SCSEEEEEESSTTCCCC
T ss_pred CccccCCccccccccccceEc----CCCEEEEeCccccCCcc
Confidence 346899999999887633333 79999999999999984
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.03 E-value=0.25 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
.+.+|+||.||||||+..+|.--+|.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 48889999999999999998765553
No 479
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.03 E-value=0.26 Score=48.09 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.+++.
T Consensus 15 i~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 57999999999999999764
No 480
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.02 E-value=0.25 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
-.+|+|+.|+|||+++.++...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3579999999999999997643
No 481
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.02 E-value=0.25 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.||||||++.+++.
T Consensus 21 i~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 57999999999999999774
No 482
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.00 E-value=6.8 Score=31.37 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 653 ESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEI 726 (1154)
Q Consensus 653 ~~~l~~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~~l 726 (1154)
+..|+.+|..+-..|.-++-++..++..-..+..+...+....+.+..+...+..+.......+..+-.++..+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 483
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.93 E-value=0.25 Score=51.28 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~ 53 (1154)
-.+|||+.|+||||++.+|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999753
No 484
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=87.88 E-value=0.25 Score=59.41 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 32 DFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
..++|+||||+|||||+++|+...|.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCC
Confidence 37899999999999999999987764
No 485
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.85 E-value=67 Score=40.52 Aligned_cols=11 Identities=18% Similarity=-0.000 Sum_probs=5.1
Q ss_pred HHHHHhcCCcc
Q 036401 127 NAKLRSLGILV 137 (1154)
Q Consensus 127 ~~~l~~~~i~~ 137 (1154)
..+|..++++.
T Consensus 729 ~~il~~~~~~~ 739 (1080)
T 2dfs_A 729 KNVLEKLILDK 739 (1080)
T ss_dssp HHHHTTTSCCG
T ss_pred HHHHHHhcCCh
Confidence 33444555444
No 486
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.85 E-value=0.26 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISFV 54 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~~ 54 (1154)
-.+|+|+.|+||||++.+++-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3579999999999999998754
No 487
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.81 E-value=0.25 Score=48.94 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+++.+++-
T Consensus 26 i~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 47999999999999999864
No 488
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.80 E-value=0.26 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 036401 33 FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 33 ~~~IvG~NGsGKS~ildAi~~ 53 (1154)
=.+|+|+.||||||++.++..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999764
No 489
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.79 E-value=0.26 Score=48.56 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~~ 53 (1154)
.+|+|+.|+|||+|+.+++.
T Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999764
No 490
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.66 E-value=0.29 Score=54.02 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=0.0
Q ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHHHhC
Q 036401 28 GPFSDFTAIIGPNGAGKSNLMDAISFVLG 56 (1154)
Q Consensus 28 ~~~~~~~~IvG~NGsGKS~ildAi~~~lg 56 (1154)
+..++ .+|+||+|+|||+++.+|.-.++
T Consensus 56 ~~~~~-~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 56 ANLPH-MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCCHHHHHHHHHHHhC
No 491
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=87.65 E-value=0.26 Score=53.75 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|||++|+||||++.+|+
T Consensus 5 I~IVG~pnvGKSTL~n~Lt 23 (363)
T 1jal_A 5 CGIVGLPNVGKSTLFNALT 23 (363)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 492
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.63 E-value=0.25 Score=49.33 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+|||||+.+++
T Consensus 29 i~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
No 493
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=87.60 E-value=0.24 Score=52.61 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCcc
Q 036401 29 PFSDFTAIIGPNGAGKSNLMDAISFVLGVR 58 (1154)
Q Consensus 29 ~~~~~~~IvG~NGsGKS~ildAi~~~lg~~ 58 (1154)
|..++++|.||.|||||++.-+++...|.+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~ 150 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGK 150 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCC
No 494
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.56 E-value=0.28 Score=48.11 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+|||+++.+++
T Consensus 8 i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 495
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.54 E-value=0.28 Score=49.20 Aligned_cols=19 Identities=37% Similarity=0.707 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+||||++.++.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.44 E-value=0.28 Score=51.67 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccch
Q 036401 29 PFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKD 69 (1154)
Q Consensus 29 ~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~ 69 (1154)
+.+.-.+|+||.|||||++..||+..++...-...+..+.+
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
No 497
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.40 E-value=0.32 Score=57.17 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=0.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Q 036401 31 SDFTAIIGPNGAGKSNLMDAISFVL 55 (1154)
Q Consensus 31 ~~~~~IvG~NGsGKS~ildAi~~~l 55 (1154)
+++++|+||+|+|||+++.+|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
No 498
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.39 E-value=0.27 Score=48.02 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 036401 34 TAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 34 ~~IvG~NGsGKS~ildAi~ 52 (1154)
.+|+|+.|+|||+++.++.
T Consensus 9 i~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
No 499
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=87.27 E-value=0.28 Score=53.19 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=0.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q 036401 32 DFTAIIGPNGAGKSNLMDAIS 52 (1154)
Q Consensus 32 ~~~~IvG~NGsGKS~ildAi~ 52 (1154)
+..+|||+.||||||++.+|.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
No 500
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.26 E-value=0.21 Score=53.99 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred ecceeccCceeecCCCC-eEEEEcCCCCCHHHHHHHHHH
Q 036401 16 ENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISF 53 (1154)
Q Consensus 16 ~nFks~~~~~~i~~~~~-~~~IvG~NGsGKS~ildAi~~ 53 (1154)
.||..+.... -|+.+| +++|.||.|+|||++.-.|++
T Consensus 53 TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 53 SGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Done!