BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036402
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TDX|A Chain A, Crystal Structure Of Hsc L82v
pdb|3TDX|B Chain B, Crystal Structure Of Hsc L82v
pdb|3TDX|C Chain C, Crystal Structure Of Hsc L82v
pdb|3TDX|D Chain D, Crystal Structure Of Hsc L82v
pdb|3TDX|E Chain E, Crystal Structure Of Hsc L82v
Length = 268
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 164 SIALCLSIAKIFSHRKIKGNLMVMKA-----GVDVASSKKIWHAFQALGNIAFAYTYSMM 218
S A+ LS+ + GN MVM A GV + + KIW A+ +GN+ A ++
Sbjct: 70 SFAIALSLVIMTGTEVFTGNNMVMSAGMLNKGVSIKDTSKIW-AYSWVGNLIGALVLGII 128
Query: 219 LLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC 256
+ K P E S ++ TALF+ + C
Sbjct: 129 FVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILC 166
>pdb|3TE0|A Chain A, Crystal Structure Of Hsc K148e
pdb|3TE0|B Chain B, Crystal Structure Of Hsc K148e
pdb|3TE0|C Chain C, Crystal Structure Of Hsc K148e
pdb|3TE0|D Chain D, Crystal Structure Of Hsc K148e
pdb|3TE0|E Chain E, Crystal Structure Of Hsc K148e
Length = 268
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 164 SIALCLSIAKIFSHRKIKGNLMVMKA-----GVDVASSKKIWHAFQALGNIAFAYTYSMM 218
S A+ LS+ + GN MVM A GV + + KIW A+ +GN+ A ++
Sbjct: 70 SFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIW-AYSWVGNLIGALVLGII 128
Query: 219 LLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC 256
+ K P E S ++ TALF+ + C
Sbjct: 129 FVGTGLVDKGPVAEFFANTAASEASMPFTALFFRGILC 166
>pdb|3TDP|A Chain A, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|B Chain B, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|C Chain C, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|D Chain D, Crystal Structure Of Hsc At Ph 4.5
pdb|3TDP|E Chain E, Crystal Structure Of Hsc At Ph 4.5
Length = 257
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 164 SIALCLSIAKIFSHRKIKGNLMVMKA-----GVDVASSKKIWHAFQALGNIAFAYTYSMM 218
S A+ LS+ + GN MVM A GV + + KIW A+ +GN+ A ++
Sbjct: 68 SFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIW-AYSWVGNLIGALVLGII 126
Query: 219 LLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC 256
+ K P E S ++ TALF+ + C
Sbjct: 127 FVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILC 164
>pdb|3TDS|E Chain E, Crystal Structure Of Hsc F194i
pdb|3TDS|A Chain A, Crystal Structure Of Hsc F194i
pdb|3TDS|B Chain B, Crystal Structure Of Hsc F194i
pdb|3TDS|C Chain C, Crystal Structure Of Hsc F194i
pdb|3TDS|D Chain D, Crystal Structure Of Hsc F194i
Length = 268
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 164 SIALCLSIAKIFSHRKIKGNLMVMKA-----GVDVASSKKIWHAFQALGNIAFAYTYSMM 218
S A+ LS+ + GN MVM A GV + + KIW A+ +GN+ A ++
Sbjct: 70 SFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIW-AYSWVGNLIGALVLGII 128
Query: 219 LLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC 256
+ K P E S ++ TALF+ + C
Sbjct: 129 FVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILC 166
>pdb|3TE2|A Chain A, Crystal Structure Of Hsc K16s
pdb|3TE2|B Chain B, Crystal Structure Of Hsc K16s
pdb|3TE2|C Chain C, Crystal Structure Of Hsc K16s
pdb|3TE2|D Chain D, Crystal Structure Of Hsc K16s
pdb|3TE2|E Chain E, Crystal Structure Of Hsc K16s
Length = 268
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 164 SIALCLSIAKIFSHRKIKGNLMVMKA-----GVDVASSKKIWHAFQALGNIAFAYTYSMM 218
S A+ LS+ + GN MVM A GV + + KIW A+ +GN+ A ++
Sbjct: 70 SFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIW-AYSWVGNLIGALVLGII 128
Query: 219 LLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC 256
+ K P E S ++ TALF+ + C
Sbjct: 129 FVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILC 166
>pdb|3TDO|A Chain A, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|B Chain B, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|C Chain C, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|D Chain D, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDO|E Chain E, Crystal Structure Of Hsc At Ph 9.0
pdb|3TDR|A Chain A, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|B Chain B, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|C Chain C, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|D Chain D, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|E Chain E, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|F Chain F, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|G Chain G, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|H Chain H, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|I Chain I, Crystal Structure Of Hsc At Ph 7.5
pdb|3TDR|J Chain J, Crystal Structure Of Hsc At Ph 7.5
Length = 268
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 164 SIALCLSIAKIFSHRKIKGNLMVMKA-----GVDVASSKKIWHAFQALGNIAFAYTYSMM 218
S A+ LS+ + GN MVM A GV + + KIW A+ +GN+ A ++
Sbjct: 70 SFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIW-AYSWVGNLIGALVLGII 128
Query: 219 LLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC 256
+ K P E S ++ TALF+ + C
Sbjct: 129 FVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILC 166
>pdb|3TE1|A Chain A, Crystal Structure Of Hsc T84a
pdb|3TE1|B Chain B, Crystal Structure Of Hsc T84a
pdb|3TE1|C Chain C, Crystal Structure Of Hsc T84a
pdb|3TE1|D Chain D, Crystal Structure Of Hsc T84a
pdb|3TE1|E Chain E, Crystal Structure Of Hsc T84a
Length = 268
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 164 SIALCLSIAKIFSHRKIKGNLMVMKA-----GVDVASSKKIWHAFQALGNIAFAYTYSMM 218
S A+ LS+ + GN MVM A GV + + KIW A+ +GN+ A ++
Sbjct: 70 SFAIALSLVIMTGTELFAGNNMVMSAGMLNKGVSIKDTSKIW-AYSWVGNLIGALVLGII 128
Query: 219 LLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC 256
+ K P E S ++ TALF+ + C
Sbjct: 129 FVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILC 166
>pdb|2C45|A Chain A, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|2C45|B Chain B, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|2C45|C Chain C, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|2C45|D Chain D, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|2C45|E Chain E, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|2C45|F Chain F, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|2C45|G Chain G, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|2C45|H Chain H, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
Length = 139
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 1 MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAI------TYYTAILLSDCYRTP 53
+++A T GSG++ + + A L L+IL+A+A + TY I+ D Y P
Sbjct: 56 VTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNKP 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,340,311
Number of Sequences: 62578
Number of extensions: 407280
Number of successful extensions: 824
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 14
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)