Query 036402
Match_columns 440
No_of_seqs 131 out of 1279
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 8.3E-56 1.8E-60 441.7 28.1 392 1-427 66-465 (467)
2 KOG1303 Amino acid transporter 100.0 4.5E-54 9.7E-59 417.0 31.5 392 1-429 44-437 (437)
3 KOG1304 Amino acid transporter 100.0 2.8E-53 6.1E-58 403.9 25.7 380 2-426 54-449 (449)
4 PF01490 Aa_trans: Transmembra 100.0 4.3E-53 9.2E-58 420.4 -6.4 393 2-423 10-408 (409)
5 PLN03074 auxin influx permease 100.0 1.6E-47 3.5E-52 380.2 29.4 386 2-438 53-463 (473)
6 KOG1305 Amino acid transporter 100.0 2.8E-45 6E-50 354.1 22.5 390 1-429 12-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 9.9E-46 2.2E-50 331.7 4.1 396 2-435 124-523 (524)
8 COG0814 SdaC Amino acid permea 100.0 3.6E-32 7.7E-37 266.7 28.9 360 1-398 15-387 (415)
9 PRK10483 tryptophan permease; 99.9 1.2E-25 2.6E-30 216.9 27.9 341 3-394 19-373 (414)
10 PRK15132 tyrosine transporter 99.9 2.9E-25 6.3E-30 215.4 28.1 340 2-395 10-363 (403)
11 PRK09664 tryptophan permease T 99.9 6.4E-25 1.4E-29 211.7 27.7 342 3-394 17-374 (415)
12 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.7E-24 3.6E-29 211.2 29.6 344 3-397 11-368 (394)
13 TIGR00837 araaP aromatic amino 99.9 6.4E-24 1.4E-28 208.7 25.2 342 2-394 4-359 (381)
14 PRK13629 threonine/serine tran 99.9 1.1E-21 2.4E-26 189.3 29.5 364 2-398 26-419 (443)
15 TIGR00814 stp serine transport 99.9 1.9E-20 4E-25 182.4 27.6 358 2-398 10-383 (397)
16 PRK10655 potE putrescine trans 99.6 8.2E-12 1.8E-16 125.2 30.2 229 3-259 16-245 (438)
17 TIGR03810 arg_ornith_anti argi 99.5 2E-11 4.4E-16 123.2 30.1 357 3-394 11-380 (468)
18 PRK10435 cadB lysine/cadaverin 99.5 4E-11 8.7E-16 119.9 30.6 232 3-262 15-246 (435)
19 PRK11021 putative transporter; 99.5 8.6E-11 1.9E-15 116.8 31.8 223 3-257 9-231 (410)
20 TIGR01773 GABAperm gamma-amino 99.5 8.6E-11 1.9E-15 118.3 32.0 233 4-261 23-259 (452)
21 TIGR00905 2A0302 transporter, 99.5 5.3E-11 1.1E-15 120.4 30.5 237 3-262 17-257 (473)
22 PRK10644 arginine:agmatin anti 99.5 1.1E-10 2.3E-15 117.4 30.6 228 3-260 18-248 (445)
23 PRK10197 gamma-aminobutyrate t 99.5 1.3E-10 2.9E-15 116.5 31.1 352 4-393 3-367 (446)
24 PRK10238 aromatic amino acid t 99.5 9.7E-11 2.1E-15 117.8 29.9 353 4-394 23-386 (456)
25 TIGR00909 2A0306 amino acid tr 99.5 3.9E-11 8.5E-16 120.1 26.2 286 4-311 14-309 (429)
26 PRK10249 phenylalanine transpo 99.5 2.2E-10 4.8E-15 115.3 31.4 231 4-258 32-264 (458)
27 PRK15049 L-asparagine permease 99.4 2.9E-10 6.3E-15 115.4 32.0 354 4-393 39-405 (499)
28 PRK10746 putative transport pr 99.4 4.7E-10 1E-14 112.9 31.6 354 4-394 21-388 (461)
29 TIGR00913 2A0310 amino acid pe 99.4 5.5E-10 1.2E-14 113.3 31.8 233 4-257 13-251 (478)
30 TIGR00908 2A0305 ethanolamine 99.4 2.2E-10 4.8E-15 115.0 28.3 224 6-256 20-244 (442)
31 PRK11049 D-alanine/D-serine/gl 99.4 9.9E-10 2.1E-14 111.0 32.8 233 4-259 31-267 (469)
32 PRK10580 proY putative proline 99.4 1.3E-09 2.9E-14 109.8 33.3 230 4-257 20-253 (457)
33 PRK11387 S-methylmethionine tr 99.4 1.1E-09 2.3E-14 110.8 31.7 236 4-263 25-266 (471)
34 PF13520 AA_permease_2: Amino 99.4 4.2E-10 9.2E-15 112.5 27.7 355 4-397 10-378 (426)
35 PRK10836 lysine transporter; P 99.4 2.4E-09 5.3E-14 108.8 32.2 235 4-261 26-263 (489)
36 TIGR00912 2A0309 spore germina 99.4 2.9E-10 6.3E-15 111.0 24.0 276 3-312 11-297 (359)
37 KOG1287 Amino acid transporter 99.3 4.9E-10 1.1E-14 109.1 23.0 356 2-395 21-387 (479)
38 TIGR00930 2a30 K-Cl cotranspor 99.3 6.8E-09 1.5E-13 111.8 32.8 239 5-257 89-334 (953)
39 PRK11357 frlA putative fructos 99.3 2.3E-09 5E-14 107.7 27.0 228 5-258 20-250 (445)
40 COG1113 AnsP Gamma-aminobutyra 99.3 3.3E-09 7.1E-14 101.9 25.6 351 5-393 25-388 (462)
41 TIGR00906 2A0303 cationic amin 99.3 2.7E-09 5.9E-14 109.5 26.7 356 4-393 39-410 (557)
42 TIGR00911 2A0308 L-type amino 99.2 9.9E-09 2.1E-13 104.7 26.4 232 4-259 53-291 (501)
43 TIGR03813 put_Glu_GABA_T putat 99.1 1.1E-07 2.4E-12 96.3 30.6 232 12-263 18-254 (474)
44 PRK15238 inner membrane transp 99.1 3.2E-07 6.9E-12 93.5 32.6 240 5-258 19-266 (496)
45 COG0531 PotE Amino acid transp 99.0 2.2E-07 4.8E-12 94.0 27.7 272 4-300 24-306 (466)
46 TIGR00907 2A0304 amino acid pe 99.0 5.2E-07 1.1E-11 91.7 29.6 221 16-252 37-266 (482)
47 TIGR00910 2A0307_GadC glutamat 99.0 5.9E-07 1.3E-11 91.5 29.3 221 11-256 20-247 (507)
48 TIGR03428 ureacarb_perm permea 98.9 6E-06 1.3E-10 83.8 32.8 237 8-258 29-268 (475)
49 PF03845 Spore_permease: Spore 98.9 3.1E-07 6.8E-12 88.1 21.8 273 3-312 10-293 (320)
50 KOG3832 Predicted amino acid t 98.9 6.2E-09 1.4E-13 88.4 8.4 214 4-229 21-302 (319)
51 PF00324 AA_permease: Amino ac 98.8 1.4E-08 3E-13 103.1 10.0 290 5-310 7-318 (478)
52 KOG1286 Amino acid transporter 98.7 7.4E-07 1.6E-11 90.3 18.4 295 5-313 42-353 (554)
53 COG0833 LysP Amino acid transp 98.6 1.4E-05 3E-10 78.9 23.7 351 5-392 56-426 (541)
54 COG3949 Uncharacterized membra 98.4 0.0001 2.2E-09 68.2 21.0 132 5-157 13-147 (349)
55 KOG1289 Amino acid transporter 98.2 0.00033 7.2E-09 69.3 22.2 236 16-264 73-313 (550)
56 PRK11375 allantoin permease; P 98.0 0.0045 9.8E-08 62.7 26.6 239 62-311 89-341 (484)
57 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.002 4.3E-08 64.7 23.5 192 63-265 77-273 (442)
58 TIGR02358 thia_cytX probable h 98.0 0.011 2.3E-07 58.3 27.3 250 23-311 26-276 (386)
59 PRK12488 acetate permease; Pro 97.8 0.054 1.2E-06 56.0 31.5 128 13-162 88-217 (549)
60 PF00474 SSF: Sodium:solute sy 97.8 0.0041 9E-08 61.8 21.0 136 5-161 18-156 (406)
61 COG0591 PutP Na+/proline sympo 97.8 0.06 1.3E-06 54.8 29.5 131 10-160 56-190 (493)
62 PRK09442 panF sodium/panthothe 97.7 0.088 1.9E-06 53.6 31.7 87 61-161 107-194 (483)
63 TIGR00813 sss transporter, SSS 97.6 0.037 8E-07 55.0 25.1 130 11-161 22-152 (407)
64 COG1457 CodB Purine-cytosine p 97.6 0.018 3.8E-07 56.8 21.2 213 66-310 85-300 (442)
65 COG4147 DhlC Predicted symport 97.5 0.11 2.4E-06 51.0 27.3 185 61-261 103-294 (529)
66 PRK11017 codB cytosine permeas 97.5 0.043 9.3E-07 54.4 23.3 173 62-264 71-244 (404)
67 TIGR02711 symport_actP cation/ 97.5 0.18 3.8E-06 52.2 30.1 128 11-160 86-215 (549)
68 COG1953 FUI1 Cytosine/uracil/t 97.4 0.14 3.1E-06 50.8 24.3 210 61-279 102-322 (497)
69 TIGR00796 livcs branched-chain 97.3 0.11 2.4E-06 50.7 22.7 72 3-85 3-77 (378)
70 TIGR02119 panF sodium/pantothe 97.3 0.26 5.6E-06 50.0 31.9 87 61-161 106-193 (471)
71 PRK09395 actP acetate permease 97.3 0.3 6.6E-06 50.5 31.7 129 12-161 89-218 (551)
72 PF01566 Nramp: Natural resist 96.2 1.3 2.9E-05 43.0 22.2 79 63-155 43-123 (358)
73 PF05525 Branch_AA_trans: Bran 96.1 1.7 3.6E-05 43.1 22.1 40 4-43 12-54 (427)
74 PRK15419 proline:sodium sympor 96.0 2.2 4.8E-05 43.6 26.8 87 61-161 107-196 (502)
75 PF02133 Transp_cyt_pur: Perme 95.9 0.014 3E-07 58.7 6.2 182 63-261 72-259 (440)
76 COG1914 MntH Mn2+ and Fe2+ tra 95.9 2.1 4.6E-05 42.3 29.5 75 63-151 78-152 (416)
77 PF02554 CstA: Carbon starvati 95.8 0.1 2.3E-06 49.8 10.7 96 5-105 62-157 (376)
78 TIGR03648 Na_symport_lg probab 95.7 3.3 7.1E-05 43.0 34.0 85 62-160 95-180 (552)
79 TIGR02121 Na_Pro_sym sodium/pr 95.6 3.1 6.7E-05 42.4 30.5 87 61-161 103-192 (487)
80 KOG1288 Amino acid transporter 95.6 0.35 7.6E-06 49.5 14.1 55 201-258 295-349 (945)
81 KOG2082 K+/Cl- cotransporter K 95.4 4.3 9.3E-05 42.4 22.3 140 16-160 137-284 (1075)
82 TIGR00796 livcs branched-chain 94.6 0.56 1.2E-05 45.8 12.2 80 62-155 255-334 (378)
83 PF05525 Branch_AA_trans: Bran 94.2 0.53 1.1E-05 46.6 11.0 119 18-155 222-340 (427)
84 PRK15015 carbon starvation pro 93.9 0.46 1E-05 48.8 10.1 95 5-104 93-187 (701)
85 TIGR00835 agcS amino acid carr 93.8 1.2 2.7E-05 44.0 12.9 77 4-83 56-138 (425)
86 COG1114 BrnQ Branched-chain am 93.5 1.3 2.9E-05 43.0 12.1 119 18-155 224-342 (431)
87 KOG2083 Na+/K+ symporter [Inor 92.6 0.35 7.5E-06 48.9 6.9 217 14-255 51-275 (643)
88 PRK15433 branched-chain amino 91.6 2.4 5.2E-05 42.1 11.4 117 19-155 227-343 (439)
89 PRK00701 manganese transport p 91.4 17 0.00037 36.5 30.1 43 63-105 95-137 (439)
90 PRK10484 putative transporter; 91.2 20 0.00043 36.9 30.4 93 61-161 100-197 (523)
91 COG1966 CstA Carbon starvation 89.9 10 0.00022 38.4 13.9 96 5-105 62-157 (575)
92 COG0733 Na+-dependent transpor 89.5 23 0.00051 35.1 26.3 98 5-109 19-118 (439)
93 PRK15433 branched-chain amino 86.8 36 0.00077 34.0 20.8 57 4-71 17-77 (439)
94 COG1114 BrnQ Branched-chain am 84.7 43 0.00092 33.0 17.2 62 4-77 14-79 (431)
95 KOG2349 Na+:iodide/myo-inosito 83.9 44 0.00096 34.5 15.0 184 63-264 109-303 (585)
96 KOG2466 Uridine permease/thiam 78.4 62 0.0013 32.5 13.2 203 61-274 117-331 (572)
97 COG0814 SdaC Amino acid permea 73.8 11 0.00024 37.5 7.2 51 343-393 324-375 (415)
98 PF00209 SNF: Sodium:neurotran 69.5 1.4E+02 0.0031 30.7 23.1 108 136-252 190-298 (523)
99 TIGR01197 nramp NRAMP (natural 60.5 1.8E+02 0.0039 28.7 27.4 42 63-104 65-106 (390)
100 KOG1289 Amino acid transporter 59.2 1.9E+02 0.0042 29.6 12.4 46 63-108 326-371 (550)
101 PRK12768 CysZ-like protein; Re 54.2 1.1E+02 0.0024 27.9 9.1 28 223-255 9-36 (240)
102 PRK04949 putative sulfate tran 51.7 1.3E+02 0.0028 27.7 9.2 69 222-296 17-86 (251)
103 PF05805 L6_membrane: L6 membr 49.6 38 0.00081 29.6 5.0 65 364-428 43-117 (195)
104 PF02447 GntP_permease: GntP f 45.1 3.4E+02 0.0073 27.3 12.3 83 348-430 236-322 (441)
105 cd08766 Cyt_b561_ACYB-1_like P 44.8 90 0.002 25.9 6.5 68 234-303 37-104 (144)
106 PLN02680 carbon-monoxide oxyge 43.3 1.1E+02 0.0023 27.8 7.1 68 234-303 76-143 (232)
107 PRK13183 psbN photosystem II r 42.3 36 0.00078 21.9 2.8 30 238-267 6-35 (46)
108 TIGR00909 2A0306 amino acid tr 41.6 3E+02 0.0064 27.2 11.1 47 63-109 265-311 (429)
109 PRK09928 choline transport pro 39.6 4.8E+02 0.011 27.8 12.2 87 88-175 415-502 (679)
110 CHL00020 psbN photosystem II p 38.5 34 0.00075 21.7 2.3 29 239-267 4-32 (43)
111 PF01235 Na_Ala_symp: Sodium:a 38.3 3.7E+02 0.0081 26.8 10.7 148 9-169 234-387 (416)
112 cd08764 Cyt_b561_CG1275_like N 38.1 3E+02 0.0064 24.6 10.6 70 234-303 54-123 (214)
113 PLN02810 carbon-monoxide oxyge 36.6 3.2E+02 0.007 24.7 9.9 75 223-304 69-144 (231)
114 PF02028 BCCT: BCCT family tra 34.5 5.2E+02 0.011 26.4 21.7 136 13-163 121-257 (485)
115 COG0591 PutP Na+/proline sympo 34.1 5.1E+02 0.011 26.4 11.4 91 16-107 267-357 (493)
116 PF02468 PsbN: Photosystem II 31.5 47 0.001 21.1 2.1 28 240-267 5-32 (43)
117 COG1292 BetT Choline-glycine b 30.0 3.6E+02 0.0078 27.7 9.1 88 87-177 410-497 (537)
118 COG5052 YOP1 Protein involved 29.0 3.8E+02 0.0082 23.1 7.9 20 374-393 61-80 (186)
119 COG2233 UraA Xanthine/uracil p 27.9 6E+02 0.013 25.6 10.2 93 201-294 246-339 (451)
120 PRK09950 putative transporter; 26.8 7.1E+02 0.015 25.6 13.3 155 25-185 350-506 (506)
121 KOG1619 Cytochrome b [Energy p 25.3 5.2E+02 0.011 23.5 9.6 81 217-303 71-152 (245)
122 PF00324 AA_permease: Amino ac 25.0 3.5E+02 0.0077 27.2 8.5 47 63-109 275-321 (478)
123 COG4145 PanF Na+/panthothenate 24.5 6.9E+02 0.015 24.6 24.8 185 62-267 106-301 (473)
124 cd08763 Cyt_b561_CYB561 Verteb 22.9 3.8E+02 0.0082 22.2 6.7 67 234-303 37-104 (143)
125 PF03134 TB2_DP1_HVA22: TB2/DP 22.7 2.2E+02 0.0049 21.3 5.0 38 369-406 2-41 (94)
126 COG3152 Predicted membrane pro 21.7 4.3E+02 0.0094 21.3 7.7 53 338-392 21-74 (125)
127 PF02028 BCCT: BCCT family tra 20.8 5.2E+02 0.011 26.4 8.5 68 89-158 399-466 (485)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=8.3e-56 Score=441.74 Aligned_cols=392 Identities=16% Similarity=0.213 Sum_probs=307.5
Q ss_pred CcchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeeh
Q 036402 1 MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVC 80 (440)
Q Consensus 1 ~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~ 80 (440)
++|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.+++++.+ ..+|+|++++++||++++++
T Consensus 66 ~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~------~~sY~~la~~~~G~~g~~~v 139 (467)
T PTZ00206 66 AFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN------IRTYEGVARVLLGPWGSYYV 139 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHhCHHHHHHH
Confidence 479999999999999999999999999999999999999999999999876522 23999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
++.+.+.++|+|++|+++++|.++.+++....+.. ......++..+.++..++++|++++|++++++++|.+++.+.+
T Consensus 140 ~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~--~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~ 217 (467)
T PTZ00206 140 AATRAFHGFSACVAYVISVGDILSATLKGTNAPDF--LKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMV 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch--hhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753111000 0000112233444556788999999999999999999987766
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceeccc----cccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhh
Q 036402 161 VYSSIALCLSIAKIFSHRKIKGNLMVMKAGV----DVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMM 236 (440)
Q Consensus 161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 236 (440)
+..+.+++.......++ +.++.+.++ +........+.+.++++++|||.||.++|++++|||||++ +|+
T Consensus 218 ~~vi~ivi~~~~~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~--~~~ 290 (467)
T PTZ00206 218 YLVIVIVVHSCMNGLPE-----NIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV--GKF 290 (467)
T ss_pred HHHhhhhhhhhcccCcc-----cccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch--hHH
Confidence 43333322222111111 111111110 1111112236889999999999999999999999999844 899
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhcC
Q 036402 237 KKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGF-YNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRW 315 (440)
Q Consensus 237 ~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~~ 315 (440)
.+++..++.+++++|..+|+.||+.||+++++++++|+ |.++....+++++..+.++.+||++.+|+|+.+++.+..
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~-- 368 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGW-- 368 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--
Confidence 99999999999999999999999999999999999999 456777888999999999999999999999999987632
Q ss_pred CCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHHHh---
Q 036402 316 PTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQA--- 392 (440)
Q Consensus 316 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~--- 392 (440)
+.++ .+ .+++...+..+++.+.++|+++|+++.+++++||++++.++|++|+++|++..
T Consensus 369 ~~~~--------~~----------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~ 430 (467)
T PTZ00206 369 DARK--------VA----------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFT 430 (467)
T ss_pred Cccc--------Cc----------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence 2211 11 14455556666777889999999999999999999999999999999999842
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036402 393 KIKRGSLKWFMLQILGLICLVVTLVSAIGSIADIS 427 (440)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii 427 (440)
.++.++.+|...+.++++|++.+++||+.|+++.+
T Consensus 431 ~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 431 WQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 22223344555678888999999999999999876
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-54 Score=417.04 Aligned_cols=392 Identities=37% Similarity=0.654 Sum_probs=346.6
Q ss_pred CcchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeeh
Q 036402 1 MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVC 80 (440)
Q Consensus 1 ~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~ 80 (440)
++|.+|+++|.|+|++|||++|.||..|+++++..++++.||..+|.+|.+..+++.++|.++|.|+++++||+++++++
T Consensus 44 ~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~~~~iv 123 (437)
T KOG1303|consen 44 AFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPKGRLLV 123 (437)
T ss_pred hhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCCceEee
Confidence 47899999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
...+.+..+|.|+.|++..+|++..+.+..+.+.. ..+.+.|+++++++.+|++++|+++.++++|..+.+.++
T Consensus 124 ~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~ 197 (437)
T KOG1303|consen 124 SVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMST 197 (437)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999988765421 233678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhH-HHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhH
Q 036402 161 VYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHA-FQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKV 239 (440)
Q Consensus 161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 239 (440)
.+..+.+..++....+......+..... .... +++++++.|+|++|..+|+++++||+| ++++|+
T Consensus 198 ~~a~~~~~~g~~~g~~~~~~~~~~~~~~----------~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~ 263 (437)
T KOG1303|consen 198 LYAVILIVLGIADGVGFCAPSGGYLDLG----------TIPTVFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKA 263 (437)
T ss_pred HHHHHHHHHhhccccccCCcccCcccCC----------CCcchhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhH
Confidence 8888877766665444322211111110 0111 899999999999999999999999999 889999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhcCCCCC
Q 036402 240 SLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSS 319 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~~~~~~ 319 (440)
+..++.+++++|+..++.||++|||+++++++.|+.++.|....+++++.+|++.++.+...|..+.+|+....++++
T Consensus 264 ~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~-- 341 (437)
T KOG1303|consen 264 LLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD-- 341 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--
Confidence 999999999999999999999999999999999997688999999999999999999999999999999988654332
Q ss_pred CCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHHHhccccchH
Q 036402 320 FNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSL 399 (440)
Q Consensus 320 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~ 399 (440)
+ +.+....|.+.|+.+++.+.++|..+|.|+++++++||....++++++|+++|++.+|.++...
T Consensus 342 ~---------------~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~ 406 (437)
T KOG1303|consen 342 F---------------KKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSP 406 (437)
T ss_pred c---------------cccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 1 0123468999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhHHHHHHh
Q 036402 400 KWFMLQIL-GLICLVVTLVSAIGSIADISDL 429 (440)
Q Consensus 400 ~~~~~~~~-~~~~~~~~v~g~~~si~~ii~~ 429 (440)
+|+..+.. .+++.++++...++++++++.+
T Consensus 407 ~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 407 KWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 88888877 6889999999999999888754
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-53 Score=403.92 Aligned_cols=380 Identities=21% Similarity=0.277 Sum_probs=327.0
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHH----------
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRAL---------- 71 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~---------- 71 (440)
+|++|+++|+|+|++|+||+++||+.|.+..++++.++.||++.+++|.++...+.+....+|++.++.+
T Consensus 54 ~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r~ 133 (449)
T KOG1304|consen 54 IHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLRK 133 (449)
T ss_pred HHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHHh
Confidence 5899999999999999999999999999999999999999999999998754444444457888888764
Q ss_pred cCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHH
Q 036402 72 LGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFL 151 (440)
Q Consensus 72 ~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~ 151 (440)
+|+++|.+++..+.++++|.|++|+++++++++++.+.. ....++.+.++.+..+..+|++++|+++.++.+
T Consensus 134 ~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~ 205 (449)
T KOG1304|consen 134 YGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLNLIRNLKILSPF 205 (449)
T ss_pred hcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHH
Confidence 778899999999999999999999999999999998621 122667789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCc
Q 036402 152 SIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPP 231 (440)
Q Consensus 152 s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 231 (440)
|.+++++.+.- ++...++..++.+..+ |.+...+..+....+|+.+|||+++.++.|+.++||+|
T Consensus 206 Sl~Anv~~~~g----~~ii~~y~~~~~~~~~---------~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-- 270 (449)
T KOG1304|consen 206 SLFANVFILVG----LAIIMYYLVQDLPPTS---------DLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-- 270 (449)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhccCCcc---------ccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh--
Confidence 99999988743 3333444445443111 12223345578899999999999999999999999999
Q ss_pred cchhhh---hHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 036402 232 ENKMMK---KVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHE 308 (440)
Q Consensus 232 ~~~~~~---~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~ 308 (440)
++++ +++..++.+++++|+.+|.+||+.||+++++.+++|+|+ +++...+++++++.++.+||++++|..+.+|
T Consensus 271 --~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~ 347 (449)
T KOG1304|consen 271 --QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIE 347 (449)
T ss_pred --hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHH
Confidence 9999 999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHH
Q 036402 309 KWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMY 388 (440)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~ 388 (440)
+.+.++..+. ++++..+..|+.++++++.+|..+||++.+++++||++++.+.+++|++++
T Consensus 348 ~~i~~k~~~~-------------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~lie 408 (449)
T KOG1304|consen 348 PGIRKKFSEN-------------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIE 408 (449)
T ss_pred HhHHHhcCcc-------------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHH
Confidence 9876643211 345888999999999999999999999999999999999999999999999
Q ss_pred HHHhccc---cchHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 036402 389 IEQAKIK---RGSLKWFMLQILGLICLVVTLVSAIGSIADI 426 (440)
Q Consensus 389 l~~~~~~---~~~~~~~~~~~~~~~~~~~~v~g~~~si~~i 426 (440)
++.+.++ +.+++++.+.+++++|++..+.|||.|+.++
T Consensus 409 l~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 409 LITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9986543 3345666667888899999999999988763
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=4.3e-53 Score=420.37 Aligned_cols=393 Identities=29% Similarity=0.418 Sum_probs=315.2
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
+|++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++.+ ++++..+|+|++++.+||+++++++
T Consensus 10 ~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~G~~~~~~~~ 87 (409)
T PF01490_consen 10 FNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAFGPKGKWFVD 87 (409)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--ccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999987543 2334569999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
+++.+.++|.+++|++..+|.+.++++..+.+ ...++..+.++..++++|++++|+++++++.|.+++++.+.
T Consensus 88 ~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~ 160 (409)
T PF01490_consen 88 ICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFY 160 (409)
T ss_pred chheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHhhhhhhccce
Confidence 99999999999999999999999988653221 24566788888888999999999999999999999887764
Q ss_pred HHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccc-hhhhhHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPEN-KMMKKVS 240 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~-~~~~~~~ 240 (440)
.+.+.+.. ...... .+..+.+. ++.....+.++++.++|+++|||.||+++|++++|||+| ++ +|++++.
T Consensus 161 ~~~~~~~~----~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~ 231 (409)
T PF01490_consen 161 FIVIVVIY----IISYGP--GEPSGVPS-PPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVL 231 (409)
T ss_pred eeeeecce----eeeeec--cccccccc-ccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccccccceee
Confidence 21122211 111111 11111110 011223445689999999999999999999999999998 22 3555999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhcCCCCCC
Q 036402 241 LYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSF 320 (440)
Q Consensus 241 ~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~ 320 (440)
..++.+++++|+.+|..||+.||+++++|+++|++++++...++++++.++++.+||++.+|.++.+++.+.++.+..+
T Consensus 232 ~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~- 310 (409)
T PF01490_consen 232 SISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSR- 310 (409)
T ss_pred eehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccc-
Confidence 9999999999999999999999999999999999988888999999999999999999999999999998854200000
Q ss_pred CccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHHHhccccchHH
Q 036402 321 NNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLK 400 (440)
Q Consensus 321 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~ 400 (440)
++.+. +...+++|...|+.+++.++++|..+||++++++++|+++++.++|++|+++|+|.+++++++++
T Consensus 311 ---~~~~~-------~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~ 380 (409)
T PF01490_consen 311 ---DSPKN-------TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFG 380 (409)
T ss_pred ---ccccc-------ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccc
Confidence 00000 12344788999999999999999999999999999999999999999999999999877664444
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHhH
Q 036402 401 WFM-----LQILGLICLVVTLVSAIGSI 423 (440)
Q Consensus 401 ~~~-----~~~~~~~~~~~~v~g~~~si 423 (440)
|.. .+.++++|++..+.|++.++
T Consensus 381 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 381 WWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred eeehhhccceEEEEEeeehhHHhHHHHc
Confidence 432 23445556666666666553
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.6e-47 Score=380.18 Aligned_cols=386 Identities=17% Similarity=0.195 Sum_probs=306.3
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccC---CCCCCCC--C--cccHHHHHHHHcCC
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRT---PDPINGS--R--NYTYMDAVRALLGP 74 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~---~~~~~~~--~--~~~y~~l~~~~~G~ 74 (440)
+|+++..+|.|+|+||++|+++||++|++.+++.+.++.||.+++.+++.+ .+++.+. + ..+|.|+++..+||
T Consensus 53 ~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~ 132 (473)
T PLN03074 53 FSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGP 132 (473)
T ss_pred HHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcCh
Confidence 579999999999999999999999999999999999999999999976421 1222221 1 13789999999999
Q ss_pred CceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHH
Q 036402 75 KNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSII 154 (440)
Q Consensus 75 ~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~ 154 (440)
+++.+..+...+++++.|+.|++..++.+..+- ...+.+.|++++.++.+|++++|++++++++|.+
T Consensus 133 ~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~i 199 (473)
T PLN03074 133 YWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-------------DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 199 (473)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------------CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999998887765431 1456688889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccch
Q 036402 155 AAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENK 234 (440)
Q Consensus 155 ~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 234 (440)
|+.+++.....++...+. .+. +++.+ .+...+...++.++++++|||++|..+|++++||||| +
T Consensus 200 g~~~tl~~av~i~i~~i~---~~~--~~~~~-------~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~ 263 (473)
T PLN03074 200 GLLMTTYTAWYMTIAALS---HGQ--VEGVK-------HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----Q 263 (473)
T ss_pred HHHHHHHHHHHHHHHHHh---hcC--CCCCC-------CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----h
Confidence 988665432222221111 111 01111 0111234467788889999999999999999999999 8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCC--ccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHh
Q 036402 235 MMKKVSLYAIGATALFYISLGCMGYAAYGTEAPG--NILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLE 312 (440)
Q Consensus 235 ~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~ 312 (440)
|++++...+....+.+|+.+|+.||+.|||++++ +.+.|+|++. ...+++++..++.+.+||++..|..+..|+...
T Consensus 264 ~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~ 342 (473)
T PLN03074 264 KFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIG 342 (473)
T ss_pred cccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 9999999999999999999999999999998764 5566787554 468999999999999999999999999888753
Q ss_pred hcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHHHh
Q 036402 313 SRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQA 392 (440)
Q Consensus 313 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~ 392 (440)
. ++ .+....|+..|+.+++.++++|..+|+|+.+++++||++++.+++++|+++|++.+
T Consensus 343 ~--~~-------------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~ 401 (473)
T PLN03074 343 V--HD-------------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY 401 (473)
T ss_pred c--cc-------------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 11 12336789999999999999999999999999999999999999999999999855
Q ss_pred ccc-------------cchHHH--HHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhccccccc
Q 036402 393 KIK-------------RGSLKW--FMLQILGLICLVV-TLVSAIGSIADISDLLKHAKLLHI 438 (440)
Q Consensus 393 ~~~-------------~~~~~~--~~~~~~~~~~~~~-~v~g~~~si~~ii~~~~~~~~~~~ 438 (440)
+++ ..+++| +.+..+++++.++ .+.|+|+|+.+++++.++|+.|++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~ 463 (473)
T PLN03074 402 RSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAK 463 (473)
T ss_pred cchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhh
Confidence 332 111222 3444555444455 479999999999999999998875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-45 Score=354.13 Aligned_cols=390 Identities=22% Similarity=0.332 Sum_probs=311.6
Q ss_pred CcchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeeh
Q 036402 1 MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVC 80 (440)
Q Consensus 1 ~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~ 80 (440)
++|+.|+++|+|++++|++|++.|.+.|++++..++.++.++.+++.+|+++. +++ +|++++++.+|+.++...
T Consensus 12 v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~----~~~--ty~~l~~~~~g~~g~~~~ 85 (411)
T KOG1305|consen 12 VFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS----GER--TYSSLGDLIFGKLGKVDA 85 (411)
T ss_pred HHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc----CCC--CHHHHHHHHcCCCceeee
Confidence 47999999999999999999999999999999999999999999999998753 233 999999999999998888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccch-hhHhhhHHHHHhhcCCCCchhhHHHHHHHHHH
Q 036402 81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHL-YMLTYGAIETILSQCPNLEKATFLSIIAAVTS 159 (440)
Q Consensus 81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 159 (440)
.+.......| |++|+++++|.++.+.......++.. .. +.+++. +++....++.||++.|+++++++.|.++..++
T Consensus 86 ~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~ 162 (411)
T KOG1305|consen 86 AVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASV 162 (411)
T ss_pred hhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-cc-cccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888777778 89999999999997765422111111 11 233333 45666788999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhH
Q 036402 160 LVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKV 239 (440)
Q Consensus 160 ~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 239 (440)
....++++ ++....+...++... +.++....++.+.++|+++|||.||.|..++++||||| +++|++++
T Consensus 163 ~~fv~~vv----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v 231 (411)
T KOG1305|consen 163 VYFVVLVV----YKYFQGPCALGRLSY-----LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRV 231 (411)
T ss_pred HHHHHHHH----HHHHhcccccCCccc-----ccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHH
Confidence 75544444 333332211111110 11222223689999999999999999999999999999 56999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchH------HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhh
Q 036402 240 SLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLW------LVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLES 313 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~------~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~ 313 (440)
...+...+.++|...|..||+.|||++.+|++.++++.+. .....+..+.++++..+|+..+|+|..+++.+.+
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~ 311 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFP 311 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcc
Confidence 9999999999999999999999999999999999976543 2478999999999999999999999998887754
Q ss_pred cCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHHHhc
Q 036402 314 RWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAK 393 (440)
Q Consensus 314 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~~ 393 (440)
..++++ .....++++++..++..+.+.|+++||++++++++||+++..++|++|+++|++.+|
T Consensus 312 ~~~~~~-----------------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~ 374 (411)
T KOG1305|consen 312 YQPGLT-----------------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASK 374 (411)
T ss_pred cCCCCC-----------------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeec
Confidence 333221 011257778888899999999999999999999999999999999999999999877
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 036402 394 IKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDL 429 (440)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~~ 429 (440)
++.+ +....+...++++...+.|++.-+.++..+
T Consensus 375 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 375 KKSR--EPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred cccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6222 333445666778888888888777776653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-46 Score=331.72 Aligned_cols=396 Identities=20% Similarity=0.229 Sum_probs=336.4
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---CcccHHHHHHHHcCCC-ce
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGS---RNYTYMDAVRALLGPK-NV 77 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~---~~~~y~~l~~~~~G~~-~~ 77 (440)
.|+.|++-|.=+++||+|....||. ++..++.++.+++|++.+|++|..+++| .|+ ...+|.++++.++++. |.
T Consensus 124 WNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYvaIA~~C~~P~lGg 201 (524)
T KOG4303|consen 124 WNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYVAIADFCYKPGLGG 201 (524)
T ss_pred hhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHHHHHHHhcCCCcch
Confidence 6899999999999999999999998 9999999999999999999999987665 344 2469999999988876 66
Q ss_pred eehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHH
Q 036402 78 VVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAV 157 (440)
Q Consensus 78 ~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~ 157 (440)
+.+.+.+.+.+.++|+.|++..||.++.-+++. ..+.+-|+++..+.++|.+++|+++..+.+|+++.+
T Consensus 202 r~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~ 270 (524)
T KOG4303|consen 202 RWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTI 270 (524)
T ss_pred heeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998755431 456788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhh
Q 036402 158 TSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMK 237 (440)
Q Consensus 158 ~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 237 (440)
..+..-.+++.+|+...-+.. +..+.+ ..+..+++.++|+++|+|..|..+|++..+|++| .+|+
T Consensus 271 sH~viN~i~v~YCLs~~~dW~-----wskv~F------sidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn 335 (524)
T KOG4303|consen 271 SHLVINLIMVLYCLSFVSDWS-----WSKVTF------SIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-----ceeEEE------EEEcccCceEEEEEEEeeeceeeccccccccCCh----hHhe
Confidence 999888888888877654432 222221 1222357789999999999999999999999999 8999
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhcCCC
Q 036402 238 KVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPT 317 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~~~~ 317 (440)
.++.++-+...++-..+|.+||++|++.+++.+++|+|+.+ .....+++++...+.|||+-++...+.+|+-+.+..|+
T Consensus 336 ~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs-fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~ 414 (524)
T KOG4303|consen 336 VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS-FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQ 414 (524)
T ss_pred eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc-hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCC
Confidence 99999999999999999999999999999999999998654 47889999999999999999999999999887665555
Q ss_pred CCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHHHhccccc
Q 036402 318 SSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRG 397 (440)
Q Consensus 318 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~ 397 (440)
.+|..-+. | +.+.+-+....|..+++.+.++|+++|.+..+++++|++++..++|++|++||++.+.+...
T Consensus 415 t~Fpscys---~------Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~ 485 (524)
T KOG4303|consen 415 TPFPSCYS---P------DGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLN 485 (524)
T ss_pred CCCceeeC---C------CcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhh
Confidence 44321111 1 11223455678999999999999999999999999999999999999999999998776655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Q 036402 398 SLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKL 435 (440)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~~~~~~~~ 435 (440)
+.++.....+++.|..+++.|.|-|..++|+.++.-.+
T Consensus 486 ~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 486 NFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred hHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 55566677788889999999999999999999887544
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-32 Score=266.75 Aligned_cols=360 Identities=17% Similarity=0.230 Sum_probs=264.5
Q ss_pred CcchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeeh
Q 036402 1 MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVC 80 (440)
Q Consensus 1 ~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~ 80 (440)
+.++.++++|+|+|++|++++..|+.++++++++.+.+++++.+++.|+.++.+. + ..++.+++++.+||+++++.
T Consensus 15 vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~--~--~~~~~~~~~~~~G~~~~~li 90 (415)
T COG0814 15 VLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN--G--KASITSLVEDYLGKKGGILI 90 (415)
T ss_pred HHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--C--cccHHHHHHHHhCcchHHHH
Confidence 3578999999999999999999999999999999999999999999999876431 1 13899999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
++.+.+.+++.+.+|.+..||.+++.+++.. +.. ..+++...+++..++.++++.++...++..+.+......
T Consensus 91 ~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~-~~~------~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~ 163 (415)
T COG0814 91 GLSYFFALYGLLVAYIVGIGNLLASFLGNQF-GLN------PLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVI 163 (415)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHhhc-ccC------CcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987522 110 156677788888888899999999999999998877665
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHH
Q 036402 161 VYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVS 240 (440)
Q Consensus 161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 240 (440)
...+ +..+.....+.. +....+ +.+ .........++|+++|||+||+++|++.+|||++. +++.+|+.
T Consensus 164 ~~~~----l~~~~~~~~~~~--~l~~~~---~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~--~~~~~k~~ 231 (415)
T COG0814 164 YLVL----LVVYLIPHWNPA--NLFALP---SAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS--KKAVRKAI 231 (415)
T ss_pred HHHH----HHHHHhcccCHH--HHhccc---ccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch--hHHHHHHH
Confidence 3222 222322221111 111110 000 23334688999999999999999999999999883 34599999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchH-------------HHHHHHHHHHHHHHHhhhhcccchHHHH
Q 036402 241 LYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLW-------------LVDIANIAVIIHLIGAYQVFAQPIFAMH 307 (440)
Q Consensus 241 ~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~-------------~~~~~~~~~~~~~~~s~pl~~~p~~~~~ 307 (440)
..+..+..++|...+..+|..+|+.+.++++++.++++. .....+++..+.+..||--.....++..
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~ 311 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence 999999999999999999999999999999998865432 2233344444444444444444445555
Q ss_pred HHHHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHH
Q 036402 308 EKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRM 387 (440)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~ 387 (440)
++.+.+ .+++ + +| +..............+......+...++.+.+.+.+|+.....+.++.|...
T Consensus 312 ~~~~~~--~~~~---------~---~r-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~ 376 (415)
T COG0814 312 ADLFKK--SNSK---------P---GR-KKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKL 376 (415)
T ss_pred hHHHHh--ccCc---------c---cc-hhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554432 1111 0 00 0111122333344455566677788888999999999999889999999888
Q ss_pred HHHHhccccch
Q 036402 388 YIEQAKIKRGS 398 (440)
Q Consensus 388 ~l~~~~~~~~~ 398 (440)
+.|....++.+
T Consensus 377 ~~~~~~~~~~~ 387 (415)
T COG0814 377 IYKLPALKVYG 387 (415)
T ss_pred cCCCCceeecC
Confidence 77765444433
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=1.2e-25 Score=216.93 Aligned_cols=341 Identities=12% Similarity=0.098 Sum_probs=240.2
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-+..|++|+|+|++|.+.++.|..+++++++++|.++.||+.++.|...+.++ ..++.+++|+.+||+|+++..+
T Consensus 19 iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~~~LG~~g~~i~~~ 93 (414)
T PRK10483 19 IIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITKDLLGKGWNVVNGI 93 (414)
T ss_pred HHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHcChHHHHHHHH
Confidence 35678999999999999999999999999999999999999999998664321 2489999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
+..+..|+.+.+|+.-.||.+++.+++. + ...+++.-.++++++.-.+.+.. .+...+++..-....+..
T Consensus 94 s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~-------~~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n~~l~~~~i~~ 163 (414)
T PRK10483 94 SIAFVLYILTYAYISASGSILHHTFAEM--S-------LNVPARAAGFGFALLVAFVVWLS-TKAVSRMTAIVLGAKVIT 163 (414)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHhc--C-------CCCcHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988641 1 02233344455555544555542 244444443332222211
Q ss_pred HHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHH
Q 036402 163 SSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLY 242 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 242 (440)
.++.+.. ..++-.. .+..+.+ ..........+.++|++++||+.|+++|++.+++++. .||.+|++..
T Consensus 164 f~~~~~~----l~~~i~~-~~L~~~~----~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~i 231 (414)
T PRK10483 164 FFLTFGS----LLGHVQP-ATLFNVA----ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVY 231 (414)
T ss_pred HHHHHHH----HHhhcCH-HHHhccc----cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHH
Confidence 1111111 1111100 0111100 0001112247799999999999999999999998853 2799999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCC-------CCCcc--c-c---CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 036402 243 AIGATALFYISLGCMGYAAYGTE-------APGNI--L-T---GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEK 309 (440)
Q Consensus 243 a~~~~~~~Y~~~g~~gy~~fg~~-------~~~~i--l-~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~ 309 (440)
+..+..++|++.=..+...-+++ ..+|+ + . +..++.+...+..++..+.+.+||--.....+|.+.|
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996433333322211 11221 1 1 2223345667888999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhhcchhhhhhhhHHH
Q 036402 310 WLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPF-FNAILGLLGSISFWPLTVHLPLRMY 388 (440)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~l~~ilP~l~~ 388 (440)
.++.+ +++ ..|.....+..+++.++|+..|+ |-..+++.|.. +..+..++|+++.
T Consensus 312 ~~k~~--~~~---------------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~ 367 (414)
T PRK10483 312 LFGFD--DSA---------------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLA 367 (414)
T ss_pred HhCCC--Ccc---------------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 88542 211 12333445677899999999998 88999999976 6688889999999
Q ss_pred HHHhcc
Q 036402 389 IEQAKI 394 (440)
Q Consensus 389 l~~~~~ 394 (440)
+|.||+
T Consensus 368 ~~~Rk~ 373 (414)
T PRK10483 368 RASRKR 373 (414)
T ss_pred HHHHhc
Confidence 999875
No 10
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=2.9e-25 Score=215.37 Aligned_cols=340 Identities=16% Similarity=0.194 Sum_probs=239.5
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
+.+..|++|+|+|+||.+.++.|..++++++++++.+..|+++++.|+..+.++ ..++.+++++.+||+|+++..
T Consensus 10 ~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-----~~~~~~~a~~~LG~~g~~i~~ 84 (403)
T PRK15132 10 FIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-----DTGLGTLAKRYLGRYGQWLTG 84 (403)
T ss_pred HHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhChHHHHHHH
Confidence 357789999999999999999999999999999999999999999997554321 238999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
++..+..+..+.+|....|+.+.+.+++...+ ..+.....+++.++.-...+. ..+...+++..-....+.
T Consensus 85 ~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii 155 (403)
T PRK15132 85 FSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKII 155 (403)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888653211 112223333443332223333 223334443332222221
Q ss_pred HHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
..+..+ ....++-..+ +....+ ... ...+.++|++.+||+.|+++|++.+.+++. .||.+|++.
T Consensus 156 ~~~~~~----~~l~p~~~~~-~L~~~~------~~~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~ 219 (403)
T PRK15132 156 FLVVML----ALMMPHIHKV-NLLTLP------LQQ--GLALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFI 219 (403)
T ss_pred HHHHHH----HHHHHhcCHH-HHhcCC------ccc--cHHHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHH
Confidence 111111 1112211110 111100 000 137899999999999999999999999753 289999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCC-----CCCc-----ccc---CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 036402 242 YAIGATALFYISLGCMGYAAYGTE-----APGN-----ILT---GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHE 308 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~gy~~fg~~-----~~~~-----il~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~ 308 (440)
.+..+..++|+..-..+...-+.+ .+++ +++ +..+..+...+..++..+.+.+||--.....+|.+.
T Consensus 220 ~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 299 (403)
T PRK15132 220 IGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLA 299 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996555544443322 1111 222 222345677888999999999999999999999999
Q ss_pred HHHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhhcchhhhhhhhHH
Q 036402 309 KWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPF-FNAILGLLGSISFWPLTVHLPLRM 387 (440)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~l~~ilP~l~ 387 (440)
+.++++ +++ ..|.....+..+++.++|...|+ +...+++.|.. .+.+.+++|+++
T Consensus 300 d~~~~~--~~~---------------------~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m 355 (403)
T PRK15132 300 DLFQRR--NTV---------------------GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLL 355 (403)
T ss_pred HHHccC--ccc---------------------cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 988531 110 22444566778899999999997 78899998864 679999999999
Q ss_pred HHHHhccc
Q 036402 388 YIEQAKIK 395 (440)
Q Consensus 388 ~l~~~~~~ 395 (440)
.+|.|+++
T Consensus 356 ~~~~r~~~ 363 (403)
T PRK15132 356 VWQSRKQN 363 (403)
T ss_pred HHHHhhcC
Confidence 99988654
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=6.4e-25 Score=211.66 Aligned_cols=342 Identities=12% Similarity=0.082 Sum_probs=238.0
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-+..|++|+|+|++|.+.++.|+.++++.++++|.++.||+.++.|+..+.++ ..++.+++|+.+||+|+++..+
T Consensus 17 iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~LG~~g~~i~~~ 91 (415)
T PRK09664 17 VIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLIGNTWNIISGI 91 (415)
T ss_pred HhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHcChHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998765421 3489999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
+..+..++.+++|+.-.|+.+++.++... + ...+++...++++++.-++.+..+ +...+.+.+-....+..
T Consensus 92 ~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~-------~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~~~~ii~ 162 (415)
T PRK09664 92 TVAFVLYILTYAYISANGAIISETISMNL-G-------YHANPRIVGICTAIFVASVLWISS-LAASRITSLFLGLKIIS 162 (415)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhc-c-------CCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999885411 0 022233333455555555555432 44444443332222211
Q ss_pred HHHHHHHHHHHhhhcccccccccceeccccccchhh-hhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 163 SSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKK-IWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
.++.+.....+...+ ...+.++ ...... ....+.++|++.+||+.|+++|++.+.+++. .||.+|++.
T Consensus 163 f~~~~~~l~~~i~~~-----~L~~~~~---~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl 231 (415)
T PRK09664 163 FVIVFGSFFFQVDYS-----ILRDATS---TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVV 231 (415)
T ss_pred HHHHHHHHhhcccHH-----HHhcCcc---ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHH
Confidence 111111111111001 1111000 000011 1246789999999999999999999998853 288999999
Q ss_pred HHHHHHHHHHHH--hhhhcccc---------cCCCCCCc---cccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 036402 242 YAIGATALFYIS--LGCMGYAA---------YGTEAPGN---ILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMH 307 (440)
Q Consensus 242 ~a~~~~~~~Y~~--~g~~gy~~---------fg~~~~~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~ 307 (440)
.+..+..++|.+ ..+.|-.. .|++.++. ...+ .++.+......++..+.+.+||--.....+|.+
T Consensus 232 ~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 232 FGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888863 23333221 22222221 1112 234567788899999999999999999999999
Q ss_pred HHHHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhhcchhhhhhhhH
Q 036402 308 EKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPF-FNAILGLLGSISFWPLTVHLPLR 386 (440)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~l~~ilP~l 386 (440)
.+.++. ++++ ..|.....+..+++.+.+++.|+ |-..+++.|.. .+.+..++|++
T Consensus 311 ~D~~~~--~~~~---------------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~l 366 (415)
T PRK09664 311 ADLFKI--DNSH---------------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAV 366 (415)
T ss_pred HHHhCC--CCcc---------------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 998854 2211 12333455677899999999998 88999999996 66888999999
Q ss_pred HHHHHhcc
Q 036402 387 MYIEQAKI 394 (440)
Q Consensus 387 ~~l~~~~~ 394 (440)
+.+|.||+
T Consensus 367 M~~~~Rk~ 374 (415)
T PRK09664 367 LAIKARKK 374 (415)
T ss_pred HHHHHhcc
Confidence 99999875
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=1.7e-24 Score=211.18 Aligned_cols=344 Identities=18% Similarity=0.234 Sum_probs=242.1
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-+..+++|+|+|+||.+.+..|..++++.+++++.++++++.++.|...+.++ ..++.+++++.+||+++++..+
T Consensus 11 li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~lG~~g~~~~~~ 85 (394)
T PF03222_consen 11 LIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYLGKKGGIVIGI 85 (394)
T ss_pred HHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhChHHHHHHHH
Confidence 46789999999999999999999999999999999999999999997654322 2399999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
...+..++.+++|....++.+++.++.... ...+++.-.+++.++...+... ..+...+.+..-+...+.
T Consensus 86 ~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~- 155 (394)
T PF03222_consen 86 SYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMII- 155 (394)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999875321 1223333333443333333322 222333333332222221
Q ss_pred HHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHH
Q 036402 163 SSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLY 242 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 242 (440)
....+... ...+. +.+.... ..+...+....+.++|++++||+.|+.+|++.+.+++. +||.+|++..
T Consensus 156 --~~~~l~~~-~~p~~----~~~~L~~--~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~ 223 (394)
T PF03222_consen 156 --SFIILVVY-LIPHW----NPSNLLD--APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIII 223 (394)
T ss_pred --HHHHHHHH-Hhhhc----CHHHhhc--cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHH
Confidence 11111112 12211 1111110 01112233467899999999999999999999999953 2899999999
Q ss_pred HHHHHHHHHHHhhh--hcccc---------cCCCCCC--ccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 036402 243 AIGATALFYISLGC--MGYAA---------YGTEAPG--NILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEK 309 (440)
Q Consensus 243 a~~~~~~~Y~~~g~--~gy~~---------fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~ 309 (440)
+..+..++|++.-. .|-.. -+++.++ ..+.+..++.+......++..+.+.+||--....++|.+++
T Consensus 224 Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 224 GSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888886533 33221 1111111 12234445566788899999999999999999999999999
Q ss_pred HHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhhcchhhhhhhhHHH
Q 036402 310 WLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPF-FNAILGLLGSISFWPLTVHLPLRMY 388 (440)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~l~~ilP~l~~ 388 (440)
.++. +++ +.+|.....+..+++.++|...|+ +...+++.| ...+.+..++|+++.
T Consensus 304 ~~k~--~~~---------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~ 359 (394)
T PF03222_consen 304 LFKL--KNN---------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMV 359 (394)
T ss_pred HHcC--Ccc---------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHH
Confidence 8853 111 123444455566778888998887 889999999 888999999999999
Q ss_pred HHHhccccc
Q 036402 389 IEQAKIKRG 397 (440)
Q Consensus 389 l~~~~~~~~ 397 (440)
+|.|++++.
T Consensus 360 ~~~r~~~~~ 368 (394)
T PF03222_consen 360 WKARKRKPK 368 (394)
T ss_pred HHHHcccCC
Confidence 998865543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=6.4e-24 Score=208.75 Aligned_cols=342 Identities=14% Similarity=0.131 Sum_probs=247.1
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
+.++++++|+|++++|..+++.|...+.+.+++.+..+.++..++.|..++. |+ ..++.+.+++.+||+++++..
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-p~----~~~~~~~~~~~~G~~~g~~~~ 78 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-PG----GASFNTIAKDLLGKTGNIIAG 78 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----CCCHHHHHHHHhCHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999976543 22 238999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
+...+.++..+.+|.+..++.+..+++..... ..+++...+++.+++.++. .+..+...+++.+.+...+.
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987642110 1222333333344444444 34567777777776665553
Q ss_pred HHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
...+.+...+.+. + . .+..+.. .......+...+++...++|++|.+++++.+|+++++ ||.+|++.
T Consensus 150 ~l~~~ii~~~~~~---~-~-~~~~~~~-----~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii 216 (381)
T TIGR00837 150 AFALVFSGLLPHV---K-G-DLLLDVA-----LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSIL 216 (381)
T ss_pred HHHHHHHHHHhhc---c-H-HHHhcCc-----cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHHH
Confidence 3322222222211 1 0 0111100 0011233678899999999999999999999998552 89999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCC-------Cc------cccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 036402 242 YAIGATALFYISLGCMGYAAYGTEAP-------GN------ILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHE 308 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~gy~~fg~~~~-------~~------il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~ 308 (440)
.+..+++++|...........+.+.- ++ ...+..++.+...+..++..+.+.+|+.....+.++.+.
T Consensus 217 ~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~ 296 (381)
T TIGR00837 217 IGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA 296 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887766655543321 11 111211334567788899999999999999999999988
Q ss_pred HHHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchH-HHHHHHhhhhcchhhhhhhhHH
Q 036402 309 KWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFN-AILGLLGSISFWPLTVHLPLRM 387 (440)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~-~i~~l~Ga~~~~~l~~ilP~l~ 387 (440)
+.+++. +++ .+|+....+..+++.++|.+.|+.. ..++..| +.+..+.+++|+++
T Consensus 297 ~~~~~~--~~~---------------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~ 352 (381)
T TIGR00837 297 DLFKFD--DSK---------------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALL 352 (381)
T ss_pred HHhCCC--ccc---------------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 877531 110 1234455666678888899999866 9999999 88889999999999
Q ss_pred HHHHhcc
Q 036402 388 YIEQAKI 394 (440)
Q Consensus 388 ~l~~~~~ 394 (440)
++|.||+
T Consensus 353 ~~~~r~~ 359 (381)
T TIGR00837 353 AWKARKK 359 (381)
T ss_pred HHHHHhc
Confidence 9998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.91 E-value=1.1e-21 Score=189.30 Aligned_cols=364 Identities=11% Similarity=0.079 Sum_probs=245.4
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
..+..+++|+|+|+||......|..++++.+++++.+++++.+.+.|...+.++ +..++.+++++.+||+++.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~----~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN----PSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CCCCHHHHHHHHcChhHHHHHH
Confidence 357889999999999999999999999999999999999999999996543222 1238999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
++.++..+..+.+|...+.+.+++.+.+. .+.. ..++....+++.+++....... -+...+++..-+...+
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~q-l~~~------~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~i- 172 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQ-LGFA------PLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPFI- 172 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcC------CccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHH-
Confidence 99999999999999999999888866432 1110 1233333344444443443332 2333333333222222
Q ss_pred HHHHHHHHHHHHhhhcccccccccceecc--ccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCC-----cc--
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAG--VDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPP-----PE-- 232 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-----~~-- 232 (440)
...+...++- +++...+ +....+++ ++..+.......+.++|++++||+.|+++|++...+|+.. ++
T Consensus 173 --~~l~~l~~~L-iP~w~~~-~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a 248 (443)
T PRK13629 173 --ASLVLISLSL-IPYWNSA-VIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFT 248 (443)
T ss_pred --HHHHHHHHHH-HHHcCHH-HHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchH
Confidence 1222222222 2211110 11111100 0000001113478899999999999999999998854331 13
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhhhcccccCCCC-----CCccc--c---C-CCC---c-----hHHHHHHHHHHHHHHH
Q 036402 233 NKMMKKVSLYAIGATALFYISLGCMGYAAYGTEA-----PGNIL--T---G-FYN---V-----LWLVDIANIAVIIHLI 293 (440)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-----~~~il--~---~-~~~---~-----~~~~~~~~~~~~~~~~ 293 (440)
.||.+|++..+..+..++|+..-..+...-+++. ++|.. . | +++ . .+......++..+.+.
T Consensus 249 ~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~ 328 (443)
T PRK13629 249 ERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIF 328 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHH
Confidence 5899999999999999999977777666655432 23322 1 1 222 1 3467778888888999
Q ss_pred HhhhhcccchHHHHHHHHhh-c-CCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 036402 294 GAYQVFAQPIFAMHEKWLES-R-WPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLL 371 (440)
Q Consensus 294 ~s~pl~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~ 371 (440)
+||--.....+|.++.+..+ . .++++ + ...+..+......+.+.+..++..-|++-++++-.
T Consensus 329 TSFlGv~LGl~E~l~gl~~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~ 392 (443)
T PRK13629 329 KSFFGHYLGTLEGLNGLILKFGYKGDKT-------K---------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM 392 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-------c---------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHh
Confidence 99999999999999988832 1 11110 1 12234455666678888999999999999999988
Q ss_pred hhhhcchhhhhhhhHHHHHHhccccch
Q 036402 372 GSISFWPLTVHLPLRMYIEQAKIKRGS 398 (440)
Q Consensus 372 Ga~~~~~l~~ilP~l~~l~~~~~~~~~ 398 (440)
|+-..+.+.|++|.+.-.|...-++.|
T Consensus 393 ~gPiia~il~l~P~y~i~kvp~l~~yr 419 (443)
T PRK13629 393 GAPIIASLLCLLPMYAIRKAPSLAKYR 419 (443)
T ss_pred hhHHHHHHHHHHHHHHHHccHHHHHhC
Confidence 888888999999999988865444433
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.88 E-value=1.9e-20 Score=182.44 Aligned_cols=358 Identities=9% Similarity=0.054 Sum_probs=248.0
Q ss_pred cchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCCCCcccHHHHHHHHcCCCceeeh
Q 036402 2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYR-TPDPINGSRNYTYMDAVRALLGPKNVVVC 80 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~-~~~~~~~~~~~~y~~l~~~~~G~~~~~l~ 80 (440)
..+..+++|+|+|++|...++.||...++..++...+++++.+++.|... +.+| ..++.|++++.+||+++.+.
T Consensus 10 ~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p-----~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 10 LGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP-----CEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CCCHHHHHHHHcCHHHHHHH
Confidence 45788999999999999999999999999999999999999999999532 2222 23899999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
.+...+..+..+.+|....++.+.+.+..... . ..+.++...+..++++-.......+.+.+++.+-....+
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~-~-------~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i 156 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLG-T-------APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV 156 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-------CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865211 0 111122222222222222233456777777666554433
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHH----hhhCCCCccchhh
Q 036402 161 VYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQ----DTLKSPPPENKMM 236 (440)
Q Consensus 161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~p~~~~~~~ 236 (440)
...++... .. .++. +.+.....| .......+...+.+++++||.+|+++|++. +|.+||..+.||.
T Consensus 157 i~l~~l~~---~l-ip~~----~~~~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 157 LILVLLSL---YL-IPHW----NGANLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHHHHHH---HH-HHHc----CHHHHhcCC--cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 22222222 21 1111 111111000 011123468899999999999999999998 3344332235899
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccccCCCC-----CCccc--c---CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHH
Q 036402 237 KKVSLYAIGATALFYISLGCMGYAAYGTEA-----PGNIL--T---GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAM 306 (440)
Q Consensus 237 ~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-----~~~il--~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~ 306 (440)
+|+...+..+..++|+..-..+....+++. ++|+. . |..+..+...+..++..+.+.+||--.....+|.
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999988777777766542 22221 1 1223345677888888899999999999999999
Q ss_pred HHHHHhhc-CCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhh
Q 036402 307 HEKWLESR-WPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPL 385 (440)
Q Consensus 307 ~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~ 385 (440)
+++.+.+. .++++ + ..++..+......+.+.+..++..-|++-++++-.|+-..+.+.|++|.
T Consensus 307 l~~l~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~ 370 (397)
T TIGR00814 307 LNGIVLNSLKMKGK-------K---------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPM 370 (397)
T ss_pred HHHHHHHHhccccc-------c---------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 99988321 11111 1 1223445556667778888999999999999998888888899999999
Q ss_pred HHHHHHhccccch
Q 036402 386 RMYIEQAKIKRGS 398 (440)
Q Consensus 386 l~~l~~~~~~~~~ 398 (440)
+.-.|...-++.|
T Consensus 371 ~~~~~v~~l~~~~ 383 (397)
T TIGR00814 371 YAIYKVPALKKYR 383 (397)
T ss_pred HHHHccHHHHHhC
Confidence 9888865444443
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.55 E-value=8.2e-12 Score=125.22 Aligned_cols=229 Identities=13% Similarity=0.040 Sum_probs=140.2
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-.+++++|+|++.+|..+++.|- .+++..++.+++.......+.|.... .|+.| ....-+++.+||+..++...
T Consensus 16 l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~G----G~y~y~~~~~G~~~gf~~gw 89 (438)
T PRK10655 16 LTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSG----GMGGYAEYAFGKSGNFMANY 89 (438)
T ss_pred HHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCC----chHHHHHHHcCcchHHHHHH
Confidence 35689999999999999998886 47888888888888888888885543 33333 33445678899998888888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhh-HHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYG-AIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
..++........+.....+++..+++. . ......+.+... +...-....+..+....++.+.....+.
T Consensus 90 ~~~~~~~~~~~~~a~~~~~y~~~~~~~-----~------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~ 158 (438)
T PRK10655 90 TYGVSLLIANVAIAISAVGYGTELFGA-----T------LSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVII 158 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-----c------cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 776666655555554555565554321 0 000111211111 1122222334455555554444333332
Q ss_pred HHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
..++++...... .+..... + .+++ .......++..++....|+|.+-.....+.+|+|||+ |+.+|++.
T Consensus 159 ~l~~~~i~~~~~-~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~ 227 (438)
T PRK10655 159 PVVGLSIIGWFW-FSPSLYV---A--AWNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHH-hCccccc---C--CcCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHH
Confidence 222222222221 1111000 0 1111 1111224577788899999999999999999999995 79999999
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 036402 242 YAIGATALFYISLGCMGY 259 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~gy 259 (440)
.+..+..++|++......
T Consensus 228 ~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998665443
No 17
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.52 E-value=2e-11 Score=123.23 Aligned_cols=357 Identities=12% Similarity=0.086 Sum_probs=192.1
Q ss_pred chhhhhhhhhhchHHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 3 HAFTAIVGSGILALPWSVAQ-LGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~-~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
..+++++|+|++.+|....+ .|....++..++.++........+.|.... .|+.+- ...+-+++.+||...++..
T Consensus 11 l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~-~P~~gG---G~y~y~~~~fG~~~gf~~g 86 (468)
T TIGR03810 11 LVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANK-KPELDG---GVYSYAKAGFGPFMGFISA 86 (468)
T ss_pred HHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC---ChhhhHHhHcCcHHHHHHH
Confidence 45789999999999887664 453334556778888888888888885544 233211 2233378899999999988
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccch--hhHh-hhHHHHHhhcCCCCchhhHHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHL--YMLT-YGAIETILSQCPNLEKATFLSIIAAVT 158 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~ii-~~~~~~pl~~~~~l~~l~~~s~~~~~~ 158 (440)
...++.......++.....+.+....+.. + ...+. +.+. ..+..+-....+..+...+++.+....
T Consensus 87 w~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----~------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 87 WGYWLSAWLGNVAYATLLFSTLGYFFPIF-----G------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc-----c------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 88877766666666666655555443221 0 01111 1111 111122222345666666666555544
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhh
Q 036402 159 SLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKK 238 (440)
Q Consensus 159 ~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 238 (440)
.+...++.+...+... +.+....+..+.. .+..+......++..++....|+|.+-.....+.+|.||+ |+.+|
T Consensus 156 ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ 229 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAF-KGDTFTNDFWGNA-NGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHh-cHhhcCccccccc-cccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchH
Confidence 4333323332222211 1111111100000 0000111122356678899999999999999999999986 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCC----CCc----cccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHH
Q 036402 239 VSLYAIGATALFYISLGCMGYAAYGTEA----PGN----ILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKW 310 (440)
Q Consensus 239 ~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~~----il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~ 310 (440)
.+..+.....++|.......+...+++. ++. +.++.. .++...+..+...++.+.+.--......+.....
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ 308 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM 308 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876655443221 111 111221 1344556666666666666655544444444433
Q ss_pred HhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHhhhhcchhhhhhhhHHHH
Q 036402 311 LESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMM-FPFFNAILGLLGSISFWPLTVHLPLRMYI 389 (440)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l 389 (440)
-.++.-.+.+.+.++.+.|. .-......+..+..+.... -+.++.+.++.+. ...+.|.++++.++
T Consensus 309 ardg~lP~~f~k~~~~~tP~-----------~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~ 375 (468)
T TIGR03810 309 AKDKLMPKYFGKENANGAPT-----------NALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQV 375 (468)
T ss_pred HhCCCccHHHHhhCCCCCCH-----------HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 32211011111111122331 2222222222111111111 1345566665443 34688899999888
Q ss_pred HHhcc
Q 036402 390 EQAKI 394 (440)
Q Consensus 390 ~~~~~ 394 (440)
|.+++
T Consensus 376 ~l~~~ 380 (468)
T TIGR03810 376 KLSWR 380 (468)
T ss_pred HHHHh
Confidence 87644
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.50 E-value=4e-11 Score=119.95 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=139.3
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-.+++++|+|++.+|...++.|-. .+...++.++........+.|.... .|+.| ...+-+++ +|+...+.+..
T Consensus 15 l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-~P~~G----G~y~y~~~-~g~~~gf~~gw 87 (435)
T PRK10435 15 VVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATK-NPQQG----GPIAYAGE-ISPAFGFQTGV 87 (435)
T ss_pred HHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----ChhHHHHH-HCcHHHHHHHH
Confidence 357899999999999999988764 6777777888888888888885543 23333 22333466 79988888887
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..+...+....++.+..++++..+++.. ++ .... ....+..+.++-+...+..+....++.+..+..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~~----~~~~-~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~ 157 (435)
T PRK10435 88 LYYHANWIGNLAIGITAVSYLSTFFPVL-----ND----PIPA-GIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIP 157 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc-----CC----hHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7666555555566566666666554320 00 1110 111111111222223344555555544443332221
Q ss_pred HHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHH
Q 036402 163 SSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLY 242 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 242 (440)
++...+......++ + +.. .++. .+......++..++....|+|.+-..+....+|+|||+ |+++|.+..
T Consensus 158 ---~~~~~i~g~~~~~~-~-~~~-~~~~--~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~ 226 (435)
T PRK10435 158 ---VVGTAIVGWHWFDA-A-TYA-ANWN--TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATML 226 (435)
T ss_pred ---HHHHHHHHHHHcCH-H-hhc-cccc--CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHH
Confidence 11111111111110 0 000 0010 11123356788999999999999999999999999994 789999999
Q ss_pred HHHHHHHHHHHhhhhccccc
Q 036402 243 AIGATALFYISLGCMGYAAY 262 (440)
Q Consensus 243 a~~~~~~~Y~~~g~~gy~~f 262 (440)
+...+.++|.+.........
T Consensus 227 ~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999998777654443
No 19
>PRK11021 putative transporter; Provisional
Probab=99.49 E-value=8.6e-11 Score=116.77 Aligned_cols=223 Identities=15% Similarity=0.086 Sum_probs=134.0
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-.+++++|+|++.+|-...+.+-..++...++.++........+.|...+. |+.| ....-+++.+||+..++...
T Consensus 9 l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~-P~aG----G~y~y~~~~~G~~~gf~~gw 83 (410)
T PRK11021 9 LLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHF-PHAG----GPAHFVGMAFGPRLGRVTGW 83 (410)
T ss_pred HHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC----CHHHhHHHHhCchhHHHHHH
Confidence 367899999999987766655334678888888999999999999965543 3333 34456678899999888887
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..+........+......+++...++. + ... .+...+..+.++-+...+..+...+++....+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~-- 149 (410)
T PRK11021 84 LFLSVIPVGLPAALQIAAGFGQALFGW------S-----SWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIALLIV-- 149 (410)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCC------C-----Cch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--
Confidence 776543333333333344444433211 0 111 11111112222223334455555555444322211
Q ss_pred HHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHH
Q 036402 163 SSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLY 242 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 242 (440)
.++..... ..+. ...+. ++. .....+..++..++....|+|.+........+|+|||+ |+++|.+..
T Consensus 150 --~i~~~~~~--~~~~-~~~~~---~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~ 216 (410)
T PRK11021 150 --ALVVAIWW--AGDI-KPADI---PFP--APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMI 216 (410)
T ss_pred --HHHHHHHH--HcCC-chhcC---CCC--CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHH
Confidence 11111111 1111 01111 110 01112344678899999999999999999999999985 789999999
Q ss_pred HHHHHHHHHHHhhhh
Q 036402 243 AIGATALFYISLGCM 257 (440)
Q Consensus 243 a~~~~~~~Y~~~g~~ 257 (440)
+...+.++|.+....
T Consensus 217 ~~~~~~~lYil~~~~ 231 (410)
T PRK11021 217 GLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 20
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.49 E-value=8.6e-11 Score=118.29 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=143.4
Q ss_pred hhhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALP-WSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+++++|+|++..| .+.++.|- .+++..++.+++.......+.|..... |..| +..+.+++.+||...+++..
T Consensus 23 ~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~-P~~G----g~~~~~~~~~g~~~gf~~gw 96 (452)
T TIGR01773 23 SIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVAN-PDTG----SFSTYADDAIGRWAGFTIGW 96 (452)
T ss_pred HHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC----CHHHHHHHHhCcHHHHHHHH
Confidence 46789999999998 67778886 478888889999999999999965432 3322 55667889999999999888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhh-hHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTY-GAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
..++.....+.+.....+++++...+. . ..+.... .+.+.-+...+..+....+........+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~ 161 (452)
T TIGR01773 97 LYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVI 161 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 888777766766666666666544311 1 1122221 21222222334455555554443333322
Q ss_pred HHHHHHHHHHHHhhhcccccccccce-ecccccc-chhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVM-KAGVDVA-SSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKV 239 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 239 (440)
..+..++..+.......+. .+..+. ++.++.. ..+...++..++....|+|.+-.......+|+|||+ |+.+|+
T Consensus 162 ~l~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrA 237 (452)
T TIGR01773 162 AIIAFIILGAVAIFGFAPG-SEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRA 237 (452)
T ss_pred HHHHHHHHHHHHHHcCCCC-CCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHH
Confidence 2222222222111111111 111111 0000000 112234688999999999999999999999999994 789999
Q ss_pred HHHHHHHHHHHHHHhhhhcccc
Q 036402 240 SLYAIGATALFYISLGCMGYAA 261 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~gy~~ 261 (440)
+..+.....++|+.........
T Consensus 238 i~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 238 TNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHeeE
Confidence 9888888888898765544433
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.49 E-value=5.3e-11 Score=120.41 Aligned_cols=237 Identities=12% Similarity=0.100 Sum_probs=146.2
Q ss_pred chhhhhhhhhhchHHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCCcccHHHHHHHHcCCCceeeh
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWI-LGLMILVAFAAITYYTAILLSDCYRTPDPI-NGSRNYTYMDAVRALLGPKNVVVC 80 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~-~gii~li~~~~~~~~s~~~l~~~~~~~~~~-~~~~~~~y~~l~~~~~G~~~~~l~ 80 (440)
..+++++|+|++.+|....+.|-. ..++..++.++........+.|..... |+ .| ...+..++.+||+..++.
T Consensus 17 l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~-P~~sG----G~y~y~~~~~G~~~gf~~ 91 (473)
T TIGR00905 17 LVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKK-PELDG----GIYAYAREGFGPYIGFMS 91 (473)
T ss_pred HHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCC----ChhhhHHhHcccccHHHH
Confidence 457899999999999998865533 345667778888888888888865442 33 23 233455889999999998
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhh-hHHHHHhhcCCCCchhhHHHHHHHHHH
Q 036402 81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTY-GAIETILSQCPNLEKATFLSIIAAVTS 159 (440)
Q Consensus 81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~pl~~~~~l~~l~~~s~~~~~~~ 159 (440)
....+.........+.....+++..+++.. +. ..+...+.... .+...-....+.++...++..+.....
T Consensus 92 gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-----~~----~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~ 162 (473)
T TIGR00905 92 GWGYWLSAWIGNVAYAVLLFSALGYFFPLF-----GS----GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAK 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 888877666666666666666666655421 00 00001111111 112222334456666666666655544
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccceeccccccc-hhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhh
Q 036402 160 LVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVAS-SKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKK 238 (440)
Q Consensus 160 ~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 238 (440)
+...++++...+.. .+.+....+..+. +.+. .....++..++....|+|.+-.....+.+|+||+ |+.+|
T Consensus 163 l~~l~~~ii~~~~~-~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPr 233 (473)
T TIGR00905 163 LIPLFLFIIIGWFW-FKLDLFTADFWGH----DVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGK 233 (473)
T ss_pred HHHHHHHHHHHHHH-hCchhcccccCcc----CCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchH
Confidence 43333333222222 1111111111000 0111 1123457788899999999999999999999993 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccc
Q 036402 239 VSLYAIGATALFYISLGCMGYAAY 262 (440)
Q Consensus 239 ~~~~a~~~~~~~Y~~~g~~gy~~f 262 (440)
.+..+..++.++|++.........
T Consensus 234 ai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 234 ATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999998776544433
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.47 E-value=1.1e-10 Score=117.36 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=136.4
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
..+++++|+|++.+|....+.|.. .+...++.++........+.|.... .|+.| ....-+++.+||...+++..
T Consensus 18 l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~-~P~aG----G~y~~~~~~~g~~~gf~~gw 91 (445)
T PRK10644 18 MVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSL-DPSPG----GSYAYARRCFGPFLGYQTNV 91 (445)
T ss_pred HHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----ChhHHHHHHcCchHHHHHHH
Confidence 357899999999999998887743 5566666777777777788885443 23333 22233788999999888887
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchh-hHhhhHH--HHHhhcCCCCchhhHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLY-MLTYGAI--ETILSQCPNLEKATFLSIIAAVTS 159 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~--~~pl~~~~~l~~l~~~s~~~~~~~ 159 (440)
..++.......+......++...+.+. ....+. .++..++ .+-....+..+...++..+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~ 158 (445)
T PRK10644 92 LYWLACWIGNIAMVVIGVGYLSYFFPI-------------LKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 777665555555554555555443321 001111 1111111 222223344555555555444333
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhH
Q 036402 160 LVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKV 239 (440)
Q Consensus 160 ~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 239 (440)
+..+.+.+...+.. .+.+.....+ + .+......++..++....|+|.+-.......+|+|||+ |+.+|+
T Consensus 159 ~i~l~~~~~~~~~~-~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPra 227 (445)
T PRK10644 159 LIPIVGIAVFGWFW-FRGETYMAAW---N----VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHH-hCchhccCCc---c----ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHH
Confidence 32212122111111 1111000000 0 11112234566788899999999999999999999995 789999
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 036402 240 SLYAIGATALFYISLGCMGYA 260 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~gy~ 260 (440)
+..+..+++++|.+.......
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~ 248 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMG 248 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987776433
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.47 E-value=1.3e-10 Score=116.52 Aligned_cols=352 Identities=12% Similarity=0.089 Sum_probs=191.2
Q ss_pred hhhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALPW-SVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP~-~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-+++++|+|++..|- +.++.|- .+++..++.+++....+..+.|.... .|+.| ...+-+++.+||...+++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~-~P~~G----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVA-TPDTG----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHHHHHcChHHHHHHHH
Confidence 367899999998776 7778886 48888899999999999999996544 23333 56667788999999998888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..++.....+.......+..+....+ ..+...+ .+..+.++-+...++.+....+..+.....+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GIPIWLF-SLVITLALTGSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cCcHHHH-HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 88776655555444444443332210 1111111 111222222223344555545444444333322
Q ss_pred HHHHHHHHHHHhhhcccccccccce-e-ccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHH
Q 036402 163 SSIALCLSIAKIFSHRKIKGNLMVM-K-AGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVS 240 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 240 (440)
.+..+...+... .+.....+..+. + ++++....+...++..++....|+|.+-..+....+|+|||+ |+.+|++
T Consensus 143 li~~ii~~~~~~-~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai 218 (446)
T PRK10197 143 ILAFIFLGAVAI-SGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRAT 218 (446)
T ss_pred HHHHHHHHHHHh-cCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHH
Confidence 222222222211 111000111110 0 000001112334788999999999999999999999999994 7899999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCC-----C---ccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHh
Q 036402 241 LYAIGATALFYISLGCMGYAAYGTEAP-----G---NILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLE 312 (440)
Q Consensus 241 ~~a~~~~~~~Y~~~g~~gy~~fg~~~~-----~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~ 312 (440)
..+.....++|+............+.. + ...++. ...+...+.++...+..+.+.--......+.+...-.
T Consensus 219 ~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 219 NSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL-NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999755543222221111 1 111222 1223445556666666666666555555555554432
Q ss_pred hcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHhhhhcchhhhhhhhHHHHH
Q 036402 313 SRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFP--FFNAILGLLGSISFWPLTVHLPLRMYIE 390 (440)
Q Consensus 313 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~~ilP~l~~l~ 390 (440)
++.-.+.+.+.+..+.| ..-.........+..+.....| .++.++++.+... .+.|.++.+.+++
T Consensus 298 dg~lP~~~~~~~~~~~P-----------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~ 364 (446)
T PRK10197 298 RGDAPAVMGKINRSKTP-----------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLR 364 (446)
T ss_pred CCCcCHHHHhhCcCCCc-----------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 21111111111111223 1222222222222223322223 3667777666544 5888888888888
Q ss_pred Hhc
Q 036402 391 QAK 393 (440)
Q Consensus 391 ~~~ 393 (440)
.||
T Consensus 365 lr~ 367 (446)
T PRK10197 365 MRK 367 (446)
T ss_pred HHH
Confidence 765
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.46 E-value=9.7e-11 Score=117.82 Aligned_cols=353 Identities=10% Similarity=0.079 Sum_probs=184.2
Q ss_pred hhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 4 AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
-+++++|+|++..|-...+.+-...++..++.+++.+.....+.|.... .|..| ++.+-+++.+||...+++...
T Consensus 23 ~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~-~P~aG----g~y~~~~~~~g~~~gf~~Gw~ 97 (456)
T PRK10238 23 ALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVE-EPVAG----SFSHFAYKYWGSFAGFASGWN 97 (456)
T ss_pred HhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHHHHHcCcHHHHHHHHH
Confidence 4678999999887665554433356677888888888888888885443 23333 555567788999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYS 163 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 163 (440)
.++.....+.+.....+++++...+. .+...+..++. .+.-.......+....++.......+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~-~~~~~lN~~gv~~~~~~~~~~~~iki~~i 163 (456)
T PRK10238 98 YWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFF-VVINAINLTNVKVFGEMEFWFAIIKVIAV 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 98888777777777777776543211 11111111211 12222223344445455444433333222
Q ss_pred HHHHHHHHHHhhhccc-ccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHH
Q 036402 164 SIALCLSIAKIFSHRK-IKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLY 242 (440)
Q Consensus 164 ~i~v~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 242 (440)
+++++..+.......+ .+....+. ++.+........++..+++...|+|.+-.......+|+|||+ |+.+|++..
T Consensus 164 ~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~ 239 (456)
T PRK10238 164 VAMIIFGGWLLFSGNGGPQATVSNL-WDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQ 239 (456)
T ss_pred HHHHHHHHHHHHcCCCCCCcccccc-CCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHH
Confidence 2222222221111111 11111110 000000012233566788889999999999999999999994 789999988
Q ss_pred HHHHHHHHHHHhhhh--cccccCCCC--CCcc---ccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhc-
Q 036402 243 AIGATALFYISLGCM--GYAAYGTEA--PGNI---LTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESR- 314 (440)
Q Consensus 243 a~~~~~~~Y~~~g~~--gy~~fg~~~--~~~i---l~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~- 314 (440)
+.....+.|...-.. +.....+-. .+.. ..+. ...+...+.+....+..+.+.--......+.+...-.++
T Consensus 240 ~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~-g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~ 318 (456)
T PRK10238 240 VIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL-GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGN 318 (456)
T ss_pred HHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888777777653222 111121111 1111 1122 112334445555555555555444444444444332211
Q ss_pred CCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHhhhhcchhhhhhhhHHHHHHh
Q 036402 315 WPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFP--FFNAILGLLGSISFWPLTVHLPLRMYIEQA 392 (440)
Q Consensus 315 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~ 392 (440)
.| +.+.+.++.+.| ..-......+..+..+.....| .++.+.++.+ .+..+.|.+|.+.+++.|
T Consensus 319 lP-~~f~kv~~~~~P-----------~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r 384 (456)
T PRK10238 319 AP-KALASVDKRGVP-----------VNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFR 384 (456)
T ss_pred cc-HHHHhhCcCCCc-----------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 11 111111111222 1222222222222222222223 2555555533 344689999999999876
Q ss_pred cc
Q 036402 393 KI 394 (440)
Q Consensus 393 ~~ 394 (440)
|+
T Consensus 385 ~~ 386 (456)
T PRK10238 385 RA 386 (456)
T ss_pred HH
Confidence 53
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.45 E-value=3.9e-11 Score=120.06 Aligned_cols=286 Identities=9% Similarity=0.022 Sum_probs=170.9
Q ss_pred hhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 4 AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
.+++++|+|++.+|......+-..+++..++.++........+.|..++. |+.| ...+..++.+||+.+++....
T Consensus 14 ~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~~~~G~~~g~~~gw~ 88 (429)
T TIGR00909 14 GIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAML-PVAG----SPYTYAYEAMGELTAFIIGWS 88 (429)
T ss_pred HHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC----cceeeHHHHhCcHHHHHHHHH
Confidence 46788999999998665544323355667777888888888888865542 3332 233445678999999999988
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCccc-ccccchh--hHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKC-HVSGHLY--MLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~--~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
..+.....+..+....++++..+++....+. +..... ......+ ..+..+++.-....+..+...+++.+.....+
T Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i 167 (429)
T TIGR00909 89 LWLEYGVAVAAVAVGWGGYLQEFLPGVGLDL-PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKV 167 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccC-chhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 8888877888888888888887765311000 000000 0001111 11222222233344567777777776665555
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHH
Q 036402 161 VYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVS 240 (440)
Q Consensus 161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 240 (440)
...++.+...+.+. + ..+..+. . .....++..++....|+|.+........+|+|||+ |+.+|++
T Consensus 168 ~~l~~~~~~~~~~~-~----~~~~~~~-----~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai 232 (429)
T TIGR00909 168 AALLLFAALGAIHF-A----SNNYTPF-----M--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAI 232 (429)
T ss_pred HHHHHhhhHHHhhC-c----HHhcCCC-----C--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHH
Confidence 43322222222211 1 0111110 1 12234678889999999999999999999999984 7899999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCC--CCC-----ccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 036402 241 LYAIGATALFYISLGCMGYAAYGTE--APG-----NILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWL 311 (440)
Q Consensus 241 ~~a~~~~~~~Y~~~g~~gy~~fg~~--~~~-----~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 311 (440)
..+..+..++|+..........+.+ .++ .+..+. ..++...+..+...+..+.+.--......+.+...-
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL-GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998776544332211 111 011111 223445566677777777766655555555555443
No 26
>PRK10249 phenylalanine transporter; Provisional
Probab=99.45 E-value=2.2e-10 Score=115.32 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=136.5
Q ss_pred hhhhhhhhhhchHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALPWSV-AQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f-~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.++.++|+|++..|-.. ++.|- ..++..++.+++....+..+.|.... .|..| +..+.+++.+|+...+++..
T Consensus 32 ~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~-~P~~G----g~~~y~~~~~g~~~gf~~gw 105 (458)
T PRK10249 32 ALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVE-EPVSG----SFAHFAYKYWGPFAGFLSGW 105 (458)
T ss_pred hhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHHHHHhChHHHHHHHH
Confidence 46789999999876554 45565 47788888999999999999995554 23333 56667889999999999888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..++.......+.....+.+++.+.+ ..+...+.+++ +.+.-....++.+..+.+........+..
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~-~~l~~~lN~~gv~~~~~i~~~~~~ikv~~ 171 (458)
T PRK10249 106 NYWVMFVLVGMAELTAAGIYMQYWFP-------------DVPTWIWAAAF-FIIINAVNLVNVRLYGETEFWFALIKVLA 171 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-------------cCcHHHHHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 87776655555555555555543321 01111111111 22222233344555444433332222221
Q ss_pred HHHHHHHHHHHhhhcc-cccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 163 SSIALCLSIAKIFSHR-KIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
++..++..+....... +.+.+.++. +++.........++..++....|+|.+-..+....+|+|||+ |+.+|++.
T Consensus 172 i~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~ 247 (458)
T PRK10249 172 IIGMIGFGLWLLFSGHGGEKASIDNL-WRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHHHcCCCCCCCChhhc-cCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHH
Confidence 1222222222111111 111111110 000000112233578899999999999999999999999984 78999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 036402 242 YAIGATALFYISLGCMG 258 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~g 258 (440)
.+.....++|.......
T Consensus 248 ~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 248 QVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998654443
No 27
>PRK15049 L-asparagine permease; Provisional
Probab=99.44 E-value=2.9e-10 Score=115.43 Aligned_cols=354 Identities=14% Similarity=0.112 Sum_probs=181.6
Q ss_pred hhhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALPW-SVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP~-~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+..++|+|++..|- +.++.|- .+++..++.+++....+..+.|.... .|..| ....-+++.+|++..+++..
T Consensus 39 ~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~-~P~aG----g~y~y~~~~~G~~~gf~~GW 112 (499)
T PRK15049 39 AIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLH-RPSSG----SFVSYAREFLGEKAAYVAGW 112 (499)
T ss_pred hhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHHHHHhCcHhHHHHHH
Confidence 467899999998766 6666775 56788888899999999999995543 23333 55666788999998888877
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhh-hHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTY-GAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
..++........-....+.+.... + ..+ .. ..|.... .+++.-+...+..+....+........+.
T Consensus 113 ~~~l~~~~~~~~~~~a~~~~~~~~-~-----~~~-----~~--~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~ 179 (499)
T PRK15049 113 MYFINWAMTGIVDITAVALYMHYW-G-----AFG-----GV--PQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVL 179 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-c-----cCC-----CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654433333333333332211 0 000 01 1222111 12222222233344444444333322222
Q ss_pred HHHHHHHHHHHHhhhccccccccccee-c-cccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMK-A-GVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKV 239 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 239 (440)
.++..++..+.......+.+.+..++. + ++.........+.+.++....|+|.+-..+....+|+|||+ |+.+|+
T Consensus 180 ~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrA 256 (499)
T PRK15049 180 AIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKA 256 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHH
Confidence 222222222221111111111100110 0 00001112233556677889999999999999999999994 789999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCC----Ccc---ccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHh
Q 036402 240 SLYAIGATALFYISLGCMGYAAYGTEAP----GNI---LTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLE 312 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~i---l~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~ 312 (440)
+..++....++|+..........+.+.. +.. .+.. ...+...+.++...+..+.+.--..+...+.+...-.
T Consensus 257 i~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ar 335 (499)
T PRK15049 257 INSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-GVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAM 335 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888765544433332211 111 1111 1123344555566666665554444444444444332
Q ss_pred hcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHhhhhcchhhhhhhhHHHHH
Q 036402 313 SRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPF--FNAILGLLGSISFWPLTVHLPLRMYIE 390 (440)
Q Consensus 313 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~--~~~i~~l~Ga~~~~~l~~ilP~l~~l~ 390 (440)
++.-.+.+.+.+..+.| ..-.+....+.++..++....|+ ++.++++.+ .+..+.|++|.+.+++
T Consensus 336 dg~lP~~f~kv~k~~~P-----------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~ 402 (499)
T PRK15049 336 GGSAPSFMAKMSRQHVP-----------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMR 402 (499)
T ss_pred cCCcCHHHHHhCCCCCC-----------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 21101111111122233 22222222222222223323332 555566544 4557899999999988
Q ss_pred Hhc
Q 036402 391 QAK 393 (440)
Q Consensus 391 ~~~ 393 (440)
.|+
T Consensus 403 ~R~ 405 (499)
T PRK15049 403 LRK 405 (499)
T ss_pred HHH
Confidence 765
No 28
>PRK10746 putative transport protein YifK; Provisional
Probab=99.42 E-value=4.7e-10 Score=112.91 Aligned_cols=354 Identities=9% Similarity=0.050 Sum_probs=188.0
Q ss_pred hhhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALP-WSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+.+++|+|++..| .+.+.+|- ..++..++.+++.+.....+.|.... .|+.| ++.+-+++.+|+...+++..
T Consensus 21 ~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~sG----g~~~y~~~~~g~~~Gf~~gw 94 (461)
T PRK10746 21 ALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPVTG----SFAVYAHRYMSPFFGYLTAW 94 (461)
T ss_pred HHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHHHHHhCcHHHHHHHH
Confidence 35788999999865 45556665 46677888888888888999985543 23333 67778899999999998888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..++.....+.......+.+++...+. .+...+..+.. .++-....+..+....+........+..
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~-~~~~~lN~~gv~~~~~~e~~~~~~ki~~ 160 (461)
T PRK10746 95 SYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAV-ALVALANLAAVRLYGEIEFWFAMIKVTT 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888776666666666666665543211 11112222221 2222222333343333332222222111
Q ss_pred HHHHHHHHHHH---hhhcccccccccceeccccc-cchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhh
Q 036402 163 SSIALCLSIAK---IFSHRKIKGNLMVMKAGVDV-ASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKK 238 (440)
Q Consensus 163 ~~i~v~~~i~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 238 (440)
+++.+...+.. ...+.+.....++. .++. .......++..++....|+|.+-..+....+|+|||+ |+++|
T Consensus 161 i~~~ii~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~ 235 (461)
T PRK10746 161 IIVMIVIGLGVIFFGFGNGGQSIGFSNL--TEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccc--cCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHH
Confidence 11112111111 11111000011111 1111 1112234677999999999999999999999999995 89999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCC----cc---ccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 036402 239 VSLYAIGATALFYISLGCMGYAAYGTEAPG----NI---LTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWL 311 (440)
Q Consensus 239 ~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~----~i---l~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 311 (440)
++..+.....++|...........+.+..+ .. ..+. .......+.+....+..+.+.--.++...+.+...-
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~-g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a 314 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI-GITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALA 314 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888887554433333322111 11 1111 112233455555556666555544444555554443
Q ss_pred hhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhh--cchhhhhhhhHHHH
Q 036402 312 ESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSIS--FWPLTVHLPLRMYI 389 (440)
Q Consensus 312 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~--~~~l~~ilP~l~~l 389 (440)
.++.-.+.+.+.+..+.| ..-.........+........|+-+.+++..-+++ +..+.++++++.++
T Consensus 315 ~~g~lP~~~~~~~~~g~P-----------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i 383 (461)
T PRK10746 315 KNRQLPAAMAKVSRHGVP-----------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQL 383 (461)
T ss_pred hCCCcCHHHHHhCCCCCc-----------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111111111111223 12222222222333334444566555555544433 34788888888888
Q ss_pred HHhcc
Q 036402 390 EQAKI 394 (440)
Q Consensus 390 ~~~~~ 394 (440)
|.||+
T Consensus 384 ~~r~~ 388 (461)
T PRK10746 384 RFRRA 388 (461)
T ss_pred HHHHh
Confidence 87654
No 29
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.42 E-value=5.5e-10 Score=113.31 Aligned_cols=233 Identities=12% Similarity=0.079 Sum_probs=141.9
Q ss_pred hhhhhhhhhhchH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILAL-PWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~l-P~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+.+++|+|++.. ..+.++.|-...+...++.+++.......+.|........+| .|.+.+++.+|+...+++..
T Consensus 13 ~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG----~~~~~~~~~~g~~~gf~~gw 88 (478)
T TIGR00913 13 ALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG----SFATYASRFVDPAFGFAVGW 88 (478)
T ss_pred HHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHcCcHHHHHHHH
Confidence 4678999999975 566667774434666888888888888889996544221222 57778899999999999988
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..++.....+.+.....+..+....+ ..+...+..+.. ++.-+...+..+...+++.......+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~~~~~~~ki~~ 154 (478)
T TIGR00913 89 NYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFY-VFIVIINLFGVKGYGEAEFWFSSIKILA 154 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 88887777766767666666653211 111122222222 2222233445566555554443322222
Q ss_pred HHHHHHHHHHHhhhccccccc--ccceeccccccch---hhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhh
Q 036402 163 SSIALCLSIAKIFSHRKIKGN--LMVMKAGVDVASS---KKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMK 237 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 237 (440)
++..+...+.....+.+.+.. ..+....++.++. ....++..++....|+|.+-.......+|+|||+ |+++
T Consensus 155 l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iP 231 (478)
T TIGR00913 155 IIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIP 231 (478)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHH
Confidence 222222222221111111100 0000000001111 1245678899999999999999999999999985 8899
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 036402 238 KVSLYAIGATALFYISLGCM 257 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~ 257 (440)
|++..+...+.++|.+....
T Consensus 232 rai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 232 RAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986544
No 30
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.41 E-value=2.2e-10 Score=115.01 Aligned_cols=224 Identities=12% Similarity=0.023 Sum_probs=132.7
Q ss_pred hhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHH
Q 036402 6 TAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQY 85 (440)
Q Consensus 6 ~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~ 85 (440)
..++|......+.++++.|+..-+...++.+++....+..+.|..... |+.| .....+++.+||..+++.....+
T Consensus 20 ~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~-P~~G----g~y~~~~~~~G~~~gf~~gw~~~ 94 (442)
T TIGR00908 20 GYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMI-PTAG----GGYGFARRAFGPWGGFLAGTAIL 94 (442)
T ss_pred HHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC----CHHHHHHHHhCcHHHHHHHHHHH
Confidence 456664444568888999997555566667777777777888855432 3333 44456688999999999888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 036402 86 SLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSI 165 (440)
Q Consensus 86 ~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i 165 (440)
+........+....++++..+++. .. .+...+..+.++-+...+..+...++.....+..+..+.+
T Consensus 95 ~~~~~~~~~~a~~~~~~l~~~~p~-------------~~-~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i 160 (442)
T TIGR00908 95 IEFAFAPPAIACFIGAYCESLFPV-------------GP-GWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGV 160 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------------Cc-hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 877777778888888887765432 01 1111111112222223334455555444333322211111
Q ss_pred HHHHHHHHhhhcccccccccceeccc-cccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHHH
Q 036402 166 ALCLSIAKIFSHRKIKGNLMVMKAGV-DVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAI 244 (440)
Q Consensus 166 ~v~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~ 244 (440)
.+ .. ...+.. ..+.....+.+ +........++..++....|+|.+........+|+|||+ |+.+|++..+.
T Consensus 161 ~~---~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~ 232 (442)
T TIGR00908 161 FI---GA-MVPHFD-SANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAI 232 (442)
T ss_pred HH---HH-HhccCC-HHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHH
Confidence 11 11 111100 00110000000 001111234678888999999999999999999999995 78999999999
Q ss_pred HHHHHHHHHhhh
Q 036402 245 GATALFYISLGC 256 (440)
Q Consensus 245 ~~~~~~Y~~~g~ 256 (440)
.++.++|...-.
T Consensus 233 ~~~~~~~~~~~~ 244 (442)
T TIGR00908 233 LTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHH
Confidence 988888876544
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.41 E-value=9.9e-10 Score=111.01 Aligned_cols=233 Identities=12% Similarity=0.060 Sum_probs=136.0
Q ss_pred hhhhhhhhhhchH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILAL-PWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~l-P~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+++++|+|++-. +.+++++|. ..+...++.+++.......+.|.... .+. ..++.+.+++.+||...+++..
T Consensus 31 ~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~----~~~~~~ya~~~~g~~~gf~~gW 104 (469)
T PRK11049 31 AIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLE----YKSFSDFASDLLGPWAGYFTGW 104 (469)
T ss_pred HHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC----CCcHHHHHHHHhCcHHHHHHHH
Confidence 4688999999986 557778887 45667777888888888888885432 111 1256678899999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..++.......+.....+.++....+. .. .+......+.++-+......+....+..+.....+..
T Consensus 105 ~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~-~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~ 170 (469)
T PRK11049 105 TYWFCWVVTGIADVVAITAYAQFWFPD-------------LS-DWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVA 170 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-------------Cc-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888776555555555555555443211 11 1111111222222223344555555554443333322
Q ss_pred HHHHHHHHHHHhhhcc-cccccccce-eccccccc-hhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhH
Q 036402 163 SSIALCLSIAKIFSHR-KIKGNLMVM-KAGVDVAS-SKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKV 239 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 239 (440)
.++.++..+.....+. ..+...... ++.++... .....++..++....|+|.+-..+....+|+|||+ |+++|+
T Consensus 171 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPra 247 (469)
T PRK11049 171 IVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRA 247 (469)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHH
Confidence 2222222222111110 000000000 00000001 12234588999999999999999999999999994 789999
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 036402 240 SLYAIGATALFYISLGCMGY 259 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~gy 259 (440)
+..+.....++|.+......
T Consensus 248 i~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 248 INSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHe
Confidence 98777777888886655443
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.40 E-value=1.3e-09 Score=109.77 Aligned_cols=230 Identities=13% Similarity=0.062 Sum_probs=134.0
Q ss_pred hhhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALPWS-VAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~-f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+.+++|+|++.+|-. .+.+|- ..++..++.++........+.|...+ .|..| ...+.+++.+||...+++..
T Consensus 20 ~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~-~P~~G----g~y~y~~~~~G~~~gf~~gw 93 (457)
T PRK10580 20 ALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVH-NPAAS----SFSRYAQENLGPLAGYITGW 93 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CHHHHHHHHcCcHHHHHHHH
Confidence 4678999999998665 455565 46888888999999999999996543 23333 44446788999999998888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..++.....+.......+.++....+ ..+...+.+.. +++.-....+..+....+........+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~l~~~ln~~gv~~~~~~~~~~~~~~~~~ 159 (457)
T PRK10580 94 TYCFEILIVAIADVTAFGIYMGVWFP-------------TVPHWIWVLSV-VLIICAVNLMSVKVFGELEFWFSFFKVAT 159 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCChHHHHHHH-HHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 87766555555444445555443321 11111222222 22222333445555555544333332222
Q ss_pred HHHHHHHHHHH---hhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhH
Q 036402 163 SSIALCLSIAK---IFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKV 239 (440)
Q Consensus 163 ~~i~v~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 239 (440)
.++.+...+.. ...+.....+..+ .++++........++..++....|+|.+-.......+|+|||+ |+.+|+
T Consensus 160 l~~~ii~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrA 235 (457)
T PRK10580 160 IIIMIVAGIGIIIWGIGNGGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRA 235 (457)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHH
Confidence 22222111111 1111100001110 0110011112233677889999999999999999999999994 779999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 036402 240 SLYAIGATALFYISLGCM 257 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~ 257 (440)
+..+.....++|......
T Consensus 236 i~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 236 INSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988887788888766544
No 33
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.39 E-value=1.1e-09 Score=110.82 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=133.4
Q ss_pred hhhhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALPWS-VAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~-f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+++++|+|++..|-. .+.+|-...++..++.+++.......+.|.... .|+.| .+..-+++.+|+...+++..
T Consensus 25 ~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~aG----G~y~y~~~~~g~~~gf~~gw 99 (471)
T PRK11387 25 SLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPETG----AFHVYAARYLGPATGYTVAW 99 (471)
T ss_pred HHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CHHHHHHHhcChHHHHHHHH
Confidence 4678999999977655 466675445677888888888888888885543 23333 45567788899998888877
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..++.....+.......+..++...+ ..+...+.++..+ ++-+...+..+.............+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~~~~-~~~~in~~gvk~~~~~~~~~~~~ki~~ 165 (471)
T PRK11387 100 LYWLTWTVALGSSLTAAGFCMQYWFP-------------QVPVWPWCLLFCA-LIFGLNVVSTRFFAEGEFWFSLIKVVT 165 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-------------cCcHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77766555444434344433322111 0011111122222 222223344444444433332222221
Q ss_pred HHHHHHHHHHHhhhc----cc-ccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhh
Q 036402 163 SSIALCLSIAKIFSH----RK-IKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMK 237 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 237 (440)
++..+...+...... .+ .....++.+ .++. ......++..++....|+|.+-..+....+|+|||+ |+++
T Consensus 166 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iP 240 (471)
T PRK11387 166 ILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT-AEGW-FPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIP 240 (471)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCcccccC-CCCC-CcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHH
Confidence 112222222111110 00 000011110 0000 011234677888889999999999999999999994 7899
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccC
Q 036402 238 KVSLYAIGATALFYISLGCMGYAAYG 263 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~gy~~fg 263 (440)
|++..+.....++|+..........+
T Consensus 241 rAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 241 VAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999987665433333
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.38 E-value=4.2e-10 Score=112.51 Aligned_cols=355 Identities=14% Similarity=0.125 Sum_probs=198.1
Q ss_pred hhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAIT-YYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+++++|+|+...| ...+.|.. +++..++.+.+. ........|..+. .|++| ...+..++.+||+.+++...
T Consensus 10 ~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G----G~y~~~~~~~g~~~g~~~~~ 82 (426)
T PF13520_consen 10 VIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAG----GIYVWVSRAFGPFWGFIVGW 82 (426)
T ss_dssp HHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST----THHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC----eeeehhhhcccccchhcccc
Confidence 46788999999999 77777765 565555655555 6777777786553 33333 55567788899999999988
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH-H
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL-V 161 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~-~ 161 (440)
...+.....+..+....++.+...+... .. +..+ ....+.+..+...-....+..+..++++.......+ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~-~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 83 LYWVAYILSLASVASSFASYLLSLFGPD----LN---PSPW-PQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTGG----GT---CSHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEeeccccccccchhhhhhhccccc----cc---cccc-hheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 8888888878777777777775543210 00 0000 011111222222233334556666776666655554 2
Q ss_pred HHHHHHHHHHHHhhhccccccc-ccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGN-LMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVS 240 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 240 (440)
.+.+.+...+..... ++.+.. ....+..|+ .....+.+++...|+|.+-...+...+|+|| |+.+|.+
T Consensus 155 ~l~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai 223 (426)
T PF13520_consen 155 PLLVLIILGIVSFSF-SGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHSTTC-CHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHH
T ss_pred hhhhheeEEEeeecc-cccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc-----hhheeec
Confidence 322333333332211 111110 000011111 1113678899999999999999999999774 7899999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCC---CCccc---c---CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 036402 241 LYAIGATALFYISLGCMGYAAYGTEA---PGNIL---T---GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWL 311 (440)
Q Consensus 241 ~~a~~~~~~~Y~~~g~~gy~~fg~~~---~~~il---~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 311 (440)
..+..++.++|.+.........+++. .++.. . +....++...+..+...+..+.+.........+.+...-
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 99999999999998776665555431 12211 0 111112455666677777777777766666666666655
Q ss_pred hhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHhhhhcchhhhhhhhHHHH
Q 036402 312 ESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFP--FFNAILGLLGSISFWPLTVHLPLRMYI 389 (440)
Q Consensus 312 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~~ilP~l~~l 389 (440)
.++.-.+.+.+.+..+.|. .-......+..+..++....| ++..+.+... ....+.++++.+.++
T Consensus 304 ~d~~lP~~~~~~~k~~~P~-----------~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 370 (426)
T PF13520_consen 304 RDGVLPKWFAKVNKFGTPY-----------NAIILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVL 370 (426)
T ss_dssp HTTSSSGGGGTTSSSSSCH-----------HHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHH
T ss_pred cccchhhhhhhccccCCce-----------eeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4332122232222222331 111111111111111112233 4555555433 334677778887777
Q ss_pred HHhccccc
Q 036402 390 EQAKIKRG 397 (440)
Q Consensus 390 ~~~~~~~~ 397 (440)
+.+++++.
T Consensus 371 ~~~~~~~~ 378 (426)
T PF13520_consen 371 FLRRKRPD 378 (426)
T ss_dssp HTHHHSCS
T ss_pred HHhhhcCC
Confidence 76655443
No 35
>PRK10836 lysine transporter; Provisional
Probab=99.36 E-value=2.4e-09 Score=108.75 Aligned_cols=235 Identities=10% Similarity=0.054 Sum_probs=125.0
Q ss_pred hhhhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 4 AFTAIVGSGILALPW-SVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 4 l~~~~iG~GiL~lP~-~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.+++++|+|++..|- +.++.|-...++..++.++++...+..+.|..... |+.| ....-+++.+|+..++++..
T Consensus 26 ~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~-P~sG----g~y~y~~~~~g~~~gf~~Gw 100 (489)
T PRK10836 26 AIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM-PVSG----SFATYGQNYVEEGFGFALGW 100 (489)
T ss_pred HHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC----CHHHHHHHHcChHHHHHHHH
Confidence 568899999999885 66677764468888999999999999999955442 3333 44555667888887777766
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
..+.... .+.+.....++.+ .... .+ ..+...+.. ..++++-.......+............-+..
T Consensus 101 ~~~~~~~-~~~a~~~~a~~~~---~~~~-~~--------~~~~~~~~~-~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~ 166 (489)
T PRK10836 101 NYWYNWA-VTIAVDLVAAQLV---MSWW-FP--------DTPGWIWSA-LFLGVIFLLNYISVRGFGEAEYWFSLIKVTT 166 (489)
T ss_pred HHHHHHH-HHHHHHHHHHHHH---hhhc-CC--------CCchHHHHH-HHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 6554322 2222222222221 1110 10 011111111 1111222222233333333322222211111
Q ss_pred HHHHHHHHHHH--hhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHH
Q 036402 163 SSIALCLSIAK--IFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVS 240 (440)
Q Consensus 163 ~~i~v~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 240 (440)
.+..+...+.. ....++.+....+...+ +.+.......+..+.....|+|.+-..+....+|+|||+ |+.+|++
T Consensus 167 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi 242 (489)
T PRK10836 167 VIVFIIVGVLMIIGIFKGAEPAGWSNWTIG-DAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAV 242 (489)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCccccCCCC-CCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHH
Confidence 11111111111 11111100111111100 011112233455566667899999999999999999994 8899999
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 036402 241 LYAIGATALFYISLGCMGYAA 261 (440)
Q Consensus 241 ~~a~~~~~~~Y~~~g~~gy~~ 261 (440)
..++..+.++|..........
T Consensus 243 ~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 243 RQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 999999999999776544333
No 36
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.35 E-value=2.9e-10 Score=110.95 Aligned_cols=276 Identities=14% Similarity=0.088 Sum_probs=172.5
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.++.+++|+|++.+|....+.+--.+.+..++.++........+.+..++. |+ .+..|..++.+||+.+++..+
T Consensus 11 l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~-p~-----~~~~~~~~~~~Gk~~g~~~~~ 84 (359)
T TIGR00912 11 LISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF-PE-----KNFSEILSKYLGKILGRLLSI 84 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC-CC-----CCHHHHHHHHhhHHHHHHHHH
Confidence 467899999999999998775555566777888888888888888866542 21 278899999999999988888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
....+....+.......+|.+.... .+ ..+ .+...+..++..-....+.++...+++.+.....+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~----l~--------~tp-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 85 LFILYFFLIAAYLIRIFADFIKTYL----LP--------RTP-IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cC--------CCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 8777777776666666666665432 11 111 1222222222223334467888888777765544322
Q ss_pred HHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHH-HHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 163 SSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQAL-GNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 163 ~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
.+ ...... ..++. +.++.. | . ...+..+...+. +...++|.+.........++||| ||.+|...
T Consensus 152 ~~--~il~~~-~~~~~----~~~~l~--P-~-~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~ 216 (359)
T TIGR00912 152 FI--LVLILL-APKLG----NIKNLL--P-V-LENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSII 216 (359)
T ss_pred HH--HHHHHH-hcccc----cHHHcc--C-c-cccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHH
Confidence 10 111111 11111 111110 0 0 011223444443 47889999888888888999988 89999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCcc-------ccCCCCch---HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 036402 242 YAIGATALFYISLGCMGYAAYGTEAPGNI-------LTGFYNVL---WLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWL 311 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~gy~~fg~~~~~~i-------l~~~~~~~---~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 311 (440)
.+..++.++|...-......+|.+..++. .+..+-++ ..-.+.-.......+.+.-+..+.....+.+.+
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~ 296 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLF 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888888886532211 11111111 122344455666666777777777777777776
Q ss_pred h
Q 036402 312 E 312 (440)
Q Consensus 312 ~ 312 (440)
+
T Consensus 297 ~ 297 (359)
T TIGR00912 297 K 297 (359)
T ss_pred C
Confidence 4
No 37
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.32 E-value=4.9e-10 Score=109.13 Aligned_cols=356 Identities=15% Similarity=0.113 Sum_probs=205.0
Q ss_pred cchhhhhhhhhhchHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceee
Q 036402 2 SHAFTAIVGSGILALPWSVAQLG--WILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVV 79 (440)
Q Consensus 2 ~~l~~~~iG~GiL~lP~~f~~~G--~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l 79 (440)
..++++++|+|+...|.+..+-+ ...+++.-+++++++..+.....|..... |++|- +|.=+ .++||+....+
T Consensus 21 ~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~i-pksGg---d~ayi-~~afg~~~aF~ 95 (479)
T KOG1287|consen 21 SLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSI-PKSGG---DYAYI-SEAFGPFPAFL 95 (479)
T ss_pred eEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCc---chhhH-HHHhccchhHH
Confidence 34677899999999999887655 33567777889999999999999977653 34443 33333 44788887765
Q ss_pred hHHHHHHHHHhhH-HHHHHHHHHH-HHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHH
Q 036402 80 CGIMQYSLLWGTM-IGYTITTAIS-VANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAV 157 (440)
Q Consensus 80 ~~~~~~~~~~g~~-i~y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~ 157 (440)
....-.+....+. ..+.+..+++ +++.++ . |..++.....+.++++..+. ..+....++.+.+..+
T Consensus 96 ~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----------c~~p~~~~~lla~~~l~~lt-~~n~~~V~~a~~vq~~ 163 (479)
T KOG1287|consen 96 FLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----------CDVPRVASKLLAAALLVLLT-LINSFSVKWATRVQIV 163 (479)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----------CCCchHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHH
Confidence 5554444444433 6667777776 554432 1 23333333333333333333 3355556666666665
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhh
Q 036402 158 TSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMK 237 (440)
Q Consensus 158 ~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 237 (440)
.+..=++......+..... ....+.++.+..+-.....+..++..++-.-.|||.+=..+-.+.+|+|||+ |+++
T Consensus 164 ft~~Kl~al~lIii~G~~~--~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP 238 (479)
T KOG1287|consen 164 FTIAKLLALLLIIITGLYL--LFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLP 238 (479)
T ss_pred HHHHHHHHHHHHHHhchhe--eEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcc---ccch
Confidence 5554333333332222211 0111111111000001123344678899999999999999999999999996 8999
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccC--CCCCCcccc-CCC---CchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 036402 238 KVSLYAIGATALFYISLGCMGYAAYG--TEAPGNILT-GFY---NVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWL 311 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~gy~~fg--~~~~~~il~-~~~---~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 311 (440)
|++..++.++++.|++.=+..+..-. +...++... .+. ..++ .....++..++.+.++--.++...+.+....
T Consensus 239 ~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~-~~~ip~~ValS~~G~~n~~ifs~SR~~~~~a 317 (479)
T KOG1287|consen 239 RAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVF-AWAIPFSVALSLIGSLNSVIFSSSRLFYAGA 317 (479)
T ss_pred HHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccch-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999987665554432 222221111 111 1122 3566667777777766655554444433322
Q ss_pred hhc-CCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHH
Q 036402 312 ESR-WPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIE 390 (440)
Q Consensus 312 ~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~ 390 (440)
.+. .|+.-...+.+...|. ...+......++..+.+|+..++++++=.-.......+=+++++|
T Consensus 318 reG~LP~~~s~i~~~~~TP~---------------~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR 382 (479)
T KOG1287|consen 318 REGHLPAFFSMISVRRFTPR---------------PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLR 382 (479)
T ss_pred HccCccHHHHhhcCCCCCCh---------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1110000000111121 233344444555566678999999888777666777777888888
Q ss_pred Hhccc
Q 036402 391 QAKIK 395 (440)
Q Consensus 391 ~~~~~ 395 (440)
.++++
T Consensus 383 ~k~p~ 387 (479)
T KOG1287|consen 383 WKHPP 387 (479)
T ss_pred hhCCC
Confidence 77654
No 38
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.30 E-value=6.8e-09 Score=111.82 Aligned_cols=239 Identities=19% Similarity=0.162 Sum_probs=147.1
Q ss_pred hhhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 5 FTAIVGSGILA-LPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 5 ~~~~iG~GiL~-lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
+.+++|+|+.- +++...++|...+++.+++.++++..+...+.+......++.|- .|. ..++.+|+..+..+.+.
T Consensus 89 ~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yisralGp~~Gf~iG~~ 164 (953)
T TIGR00930 89 LLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LISRSLGPEFGGSIGLI 164 (953)
T ss_pred hHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HHHHHhCcHHHHHHHHH
Confidence 57899999985 78999999988889999999999999999999966542344332 343 45678999988888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYS 163 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 163 (440)
.++.....+..|.+..++++..+++..+... . .....+.+.+.++..+++..+. ....+...++..+..++.+.
T Consensus 165 ~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~-~--~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~q~vl~vi~ll-- 238 (953)
T TIGR00930 165 FAFANAVAVAMYVVGFAETVLDLLRENGSKI-M--VDPINDIRIYGTVTVVVLLGIS-FAGMEWENKAQVLFLVIVLL-- 238 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccc-c--cCccccchHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH--
Confidence 8888888899999999999988775311100 0 0001111222222222222222 23344444444333322221
Q ss_pred HHHHHHHHHHhhhc-cccccccccee---cccc-ccchhhhh-hHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhh
Q 036402 164 SIALCLSIAKIFSH-RKIKGNLMVMK---AGVD-VASSKKIW-HAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMK 237 (440)
Q Consensus 164 ~i~v~~~i~~~~~~-~~~~~~~~~~~---~~~~-~~~~~~~~-~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 237 (440)
.++...+...... +.......+.. +..+ .+..+... +++..++++.+||.+-.....+..|+|||+ |+++
T Consensus 239 -~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IP 314 (953)
T TIGR00930 239 -SILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIP 314 (953)
T ss_pred -HHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhH
Confidence 1111111111110 00000000000 0000 01111122 367788888899999999999999999995 8899
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 036402 238 KVSLYAIGATALFYISLGCM 257 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~ 257 (440)
|.+..++.+++++|+++.+.
T Consensus 315 ratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 315 KGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.29 E-value=2.3e-09 Score=107.73 Aligned_cols=228 Identities=13% Similarity=0.131 Sum_probs=130.2
Q ss_pred hhhhhhhhhchHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 5 FTAIVGSGILALPWSV-AQLGWI-LGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 5 ~~~~iG~GiL~lP~~f-~~~G~~-~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
+++++|+|++..|... .+.|-. ..+...++.+++.........|........+|. +.| .++.+||...+++..
T Consensus 20 vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~--y~y---~~~~~g~~~gf~~gw 94 (445)
T PRK11357 20 VGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGAD--YVY---LKNAGSRPLAFLSGW 94 (445)
T ss_pred HHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc--eee---HHHhcCChhHHHHHH
Confidence 4678999999988764 445643 355667778888888888888865543222332 355 356789988777766
Q ss_pred HHHH-HHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 83 MQYS-LLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 83 ~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
..+. ........+....++++....+ . . ... .....+..+..+-....+..+...++..+.....+.
T Consensus 95 ~~~~~~~~~~~a~~a~~~~~y~~~~~~-----~----~--~~~-~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~ 162 (445)
T PRK11357 95 ASFWANDAPSLSIMALAIVSNLGFLTP-----I----D--PLL-GKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKII 162 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----C----c--hHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5432 2233344455556665543221 0 0 000 011111111222222345555555555555444433
Q ss_pred HHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
..++++...+.. ..+...+.+.+. + ........++..++....|+|.+-.......+|+|||+ |+++|++.
T Consensus 163 ~l~~~ii~g~~~-~~~~~~~~~~~~-~----~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~ 233 (445)
T PRK11357 163 PFTIVIGLGIFW-FKAENFAAPTTT-A----IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALI 233 (445)
T ss_pred HHHHHHHHHHHH-cCCccccCCCcc-c----ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHH
Confidence 222222222221 111111110000 0 00111234677888999999999999999999999994 78999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 036402 242 YAIGATALFYISLGCMG 258 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~g 258 (440)
.+..+++++|.+.....
T Consensus 234 ~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 234 GSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999776643
No 40
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.28 E-value=3.3e-09 Score=101.89 Aligned_cols=351 Identities=14% Similarity=0.144 Sum_probs=207.6
Q ss_pred hhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 5 FTAIVGSGIL-ALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 5 ~~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
+...||+|.. .-..+.+.+|-- -++..+++|.+.++-++.+.|...+ +|.. -++.+.+++.+|++.+.+....
T Consensus 25 iGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~~----gSF~~~a~~~lG~~Agf~tgW~ 98 (462)
T COG1113 25 IGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPVS----GSFSDYARKYLGPWAGFLTGWT 98 (462)
T ss_pred HhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCC----CcHHHHHHHHhcchHHHHHHHH
Confidence 4567888876 567777777754 3556788999999999999996654 3332 2999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhH--HHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGA--IETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
.++.-...+++-+..++.+++..+++ .+...+.++..+ ..+=+...|...++.+.-.+--+..+.
T Consensus 99 YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi 165 (462)
T COG1113 99 YWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAII 165 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887643 111222222222 223334456666665543322222221
Q ss_pred HHHHHHHHH-HHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHH
Q 036402 162 YSSIALCLS-IAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVS 240 (440)
Q Consensus 162 ~~~i~v~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 240 (440)
.. ++++.. +.....+++....+.+.. +..-.-.+...+++.++-+.+|||.+...+---..|-|||. |..+|++
T Consensus 166 ~~-Iv~G~~ll~~g~~~~~~~~g~snl~-~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAi 240 (462)
T COG1113 166 AF-IVVGIVLLFGGFGGGGGAAGFSNLW-DHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAI 240 (462)
T ss_pred HH-HHHHHHHHhhccCCCCCCccccccc-cCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHH
Confidence 11 222221 222222221111111111 00011234455889999999999999999999999999995 6677766
Q ss_pred HHHHHHHHHHHH-----HhhhhcccccCCCCCCcccc--CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhh
Q 036402 241 LYAIGATALFYI-----SLGCMGYAAYGTEAPGNILT--GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLES 313 (440)
Q Consensus 241 ~~a~~~~~~~Y~-----~~g~~gy~~fg~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~ 313 (440)
..-..=..++|. +..+..+-.++++.++.+.. .+ +-.+...+.|.......+++.---.+...+.+..+-.+
T Consensus 241 n~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~i-Gi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~ 319 (462)
T COG1113 241 NSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLI-GIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQ 319 (462)
T ss_pred hhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHc-CCcccccceeEEEeechhhcccccccccchHHHHHhhc
Confidence 655444455554 56666666666655543322 11 11223445555555555555554455555565555432
Q ss_pred cCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcc--hhhhhhhhHHHHHH
Q 036402 314 RWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFW--PLTVHLPLRMYIEQ 391 (440)
Q Consensus 314 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~--~l~~ilP~l~~l~~ 391 (440)
....+.+.+.....+| ..-.........++.++.+..| +.++.++-+..+. ...+.+=.+.|+|.
T Consensus 320 g~APk~~~klsk~gVP-----------~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~ 386 (462)
T COG1113 320 GDAPKAFAKLSKRGVP-----------VNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKL 386 (462)
T ss_pred CcccHhHhhccccCCC-----------HHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111222222233 4555666777778888888888 4444444333322 34444556778887
Q ss_pred hc
Q 036402 392 AK 393 (440)
Q Consensus 392 ~~ 393 (440)
||
T Consensus 387 rk 388 (462)
T COG1113 387 RK 388 (462)
T ss_pred Hh
Confidence 76
No 41
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.27 E-value=2.7e-09 Score=109.55 Aligned_cols=356 Identities=10% Similarity=0.007 Sum_probs=192.4
Q ss_pred hhhhhhhhhhchHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 4 AFTAIVGSGILALPWSV--AQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f--~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
-+.+++|+|+..+|-.. ...|-. .++.+++.++.+........|..... |+.|. .+.|. ++.+|+...+++.
T Consensus 39 ~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~-P~sGg-~Y~y~---~~~~G~~~gfi~G 112 (557)
T TIGR00906 39 GIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARV-PKAGS-AYLYS---YVTVGELWAFITG 112 (557)
T ss_pred HhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCc-ceeeH---HHHhCcHHHHHHH
Confidence 35789999999998543 346754 56677888888888888899855442 33332 23444 4568999999888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCC----CCCcccccccc-hhhHhhhHHHHHhhcCCCCchhhHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKK----GENAKCHVSGH-LYMLTYGAIETILSQCPNLEKATFLSIIAA 156 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~----~~~~~~~~~~~-~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~ 156 (440)
....+.......+.....++++..++........ +...+ ..... ....+..++++-+...+..+..++++.+..
T Consensus 113 W~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~ 191 (557)
T TIGR00906 113 WNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFT 191 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 8888777666666666677777776642100000 00000 01111 111122222222334466777777776665
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccce-eccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchh
Q 036402 157 VTSLVYSSIALCLSIAKIFSHRKIKGNLMVM-KAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKM 235 (440)
Q Consensus 157 ~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 235 (440)
...+..+.++++..+.+. +. .++... ..+++........+++.+.....|+|.+-..+....+|+|||+ |+
T Consensus 192 ~iki~~l~~~iv~g~~~~---~~--~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~ 263 (557)
T TIGR00906 192 AINILVLLFVIIAGFTKA---DV--ANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RA 263 (557)
T ss_pred HHHHHHHHHhhhHHHhhC---Cc--hhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---cc
Confidence 555433333333322221 11 111100 0000011112334688899999999999999999999999995 78
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcccccCCC---CCCc---cccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Q 036402 236 MKKVSLYAIGATALFYISLGCMGYAAYGTE---APGN---ILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEK 309 (440)
Q Consensus 236 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~---~~~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~ 309 (440)
++|.+..++.+++++|.++...-...-+.+ .++. ..... ..++...+..+......+.+....+....+.+..
T Consensus 264 iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~-g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~a 342 (557)
T TIGR00906 264 IPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV-GWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYA 342 (557)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766543332211 1111 11111 2234445555555555555555444455555544
Q ss_pred HHhhc-CCCCCCCccc-cccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHH
Q 036402 310 WLESR-WPTSSFNNIY-TIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRM 387 (440)
Q Consensus 310 ~~~~~-~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~ 387 (440)
.-.++ .|+ .+.+.+ ..+.| .+-++ +..+++.+++.. .+++.+.++.. .+..+.|.+++..
T Consensus 343 marDGlLP~-~fakv~~r~~tP------------~~Ail--~~~iv~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~ 404 (557)
T TIGR00906 343 MARDGLLFK-WLAQINSKTKTP------------INATV--VSGAIAALMAFL-FDLKALVDLLS--IGTLLAYSLVAAC 404 (557)
T ss_pred HHcCCCccH-HHhccCCCCCCc------------HHHHH--HHHHHHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33211 111 111111 11122 11111 112222333333 35666666543 3347888888877
Q ss_pred HHHHhc
Q 036402 388 YIEQAK 393 (440)
Q Consensus 388 ~l~~~~ 393 (440)
.+.+|+
T Consensus 405 ~l~lR~ 410 (557)
T TIGR00906 405 VLILRY 410 (557)
T ss_pred HHHhhc
Confidence 776653
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.20 E-value=9.9e-09 Score=104.73 Aligned_cols=232 Identities=15% Similarity=0.152 Sum_probs=130.4
Q ss_pred hhhhhhhhhhchHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 4 AFTAIVGSGILALPWS-VAQLGWI-LGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~-f~~~G~~-~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
.+++++|+|++..|.. ..+.|-. ..++..++.+++.......+.|..... |+.| ....-.++.+||...++..
T Consensus 53 ~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~-P~sG----G~y~~~~~~~g~~~gf~~g 127 (501)
T TIGR00911 53 IVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI-PKSG----GEYNYILEVFGPLLAFLRL 127 (501)
T ss_pred heeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC----chhhhHHhHhCCHHHHHHH
Confidence 3567899999988765 4556643 123455677777888888888865542 3333 2333456688998877766
Q ss_pred HHHHHH-HHhhHHHHHHHHHHHHHH-HHHhhcccCCCCCcccccccchhhHhh--hHHHHHhhcCCCCchhhHHHHHHHH
Q 036402 82 IMQYSL-LWGTMIGYTITTAISVAN-LKRSTCYHKKGENAKCHVSGHLYMLTY--GAIETILSQCPNLEKATFLSIIAAV 157 (440)
Q Consensus 82 ~~~~~~-~~g~~i~y~i~~~~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~ii~--~~~~~pl~~~~~l~~l~~~s~~~~~ 157 (440)
...... ..+.+..+....++++.. +.+. ...+.....++. .+.+.-....+..+...+++.+...
T Consensus 128 w~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----------~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~ 196 (501)
T TIGR00911 128 WIELLVIRPGSQAVNALNFAIYILTPVFPD-----------CEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTA 196 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 544332 223344444545555422 2111 001111111111 1222222334456666666655554
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccceeccccccc-hhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhh
Q 036402 158 TSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVAS-SKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMM 236 (440)
Q Consensus 158 ~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 236 (440)
..+...++.++..+.....++..+.+... ..+. .....++..++....|+|.+-.....+.+|+|||+ |+.
T Consensus 197 ~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~i 268 (501)
T TIGR00911 197 CKLLALLLIIITGWVQLGKGGVESLNPKN-----AFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTL 268 (501)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccCccc-----ccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhh
Confidence 44433222222222222111111111000 0111 12345677889999999999999999999999994 789
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcc
Q 036402 237 KKVSLYAIGATALFYISLGCMGY 259 (440)
Q Consensus 237 ~~~~~~a~~~~~~~Y~~~g~~gy 259 (440)
+|++..+..++.++|.+....-.
T Consensus 269 PrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 269 PIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865543
No 43
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.14 E-value=1.1e-07 Score=96.34 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=112.6
Q ss_pred hhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHh
Q 036402 12 GILALPWSVAQLGWILGLMILVAFAAITY-YTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWG 90 (440)
Q Consensus 12 GiL~lP~~f~~~G~~~gii~li~~~~~~~-~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g 90 (440)
++-.+|.+ ++.|.. +++..++.+++.. -......|.... .|+.| ...+-+++.+|++.+.+.....++....
T Consensus 18 ~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~-~P~~G----G~y~~~~~a~G~~~gf~~gw~~w~~~~~ 90 (474)
T TIGR03813 18 SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATA-WPEKG----GVFRWVGEAFGARWGFLAIFMLWAQVTI 90 (474)
T ss_pred HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCC----CceeeHhhhcChhHHHHHHHHHHHHHHH
Confidence 45556755 677854 4444444444333 366666775543 23322 3445568899999988887777665533
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhH-H--HHHhhcCCCCchhhHHHHHHHHH-HHHHHHHH
Q 036402 91 TMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGA-I--ETILSQCPNLEKATFLSIIAAVT-SLVYSSIA 166 (440)
Q Consensus 91 ~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~--~~pl~~~~~l~~l~~~s~~~~~~-~~~~~~i~ 166 (440)
....-+...+..+....+. . .. .+......+......+ + .+-+...+.++....++...... .+...+++
T Consensus 91 ~~p~~~~~~~~~~~~~~~~----~-~~-~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ 164 (474)
T TIGR03813 91 WFPTVLTFGAVSLAFIGPE----A-TV-DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAIL 164 (474)
T ss_pred HHHHHHHHHHHHHHHhcCc----c-cc-CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111122222111100 0 00 0001112222222211 1 22333455666665555443221 12111222
Q ss_pred HHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHHHHH
Q 036402 167 LCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGA 246 (440)
Q Consensus 167 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~ 246 (440)
+...+.....+.+...+ .++++-.++.....+...+ ..+.|+|.+-.......+|+|||+ |+++|++..+..+
T Consensus 165 ii~~~~~~~~g~~~~~~---~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~ 237 (474)
T TIGR03813 165 VILGISYLLTGGESQIP---LRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALG 237 (474)
T ss_pred HHHHHHHHHcCCCCCCC---CCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHH
Confidence 22222221111111111 0110001111112223322 345789999999999999999995 8899999999999
Q ss_pred HHHHHHHhhhhcccccC
Q 036402 247 TALFYISLGCMGYAAYG 263 (440)
Q Consensus 247 ~~~~Y~~~g~~gy~~fg 263 (440)
+.++|.+....-....+
T Consensus 238 ~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 238 TVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999876655443333
No 44
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.11 E-value=3.2e-07 Score=93.50 Aligned_cols=240 Identities=13% Similarity=0.065 Sum_probs=119.8
Q ss_pred hhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCC-CCCCcccHHHHHHHHcCCCceeehHH
Q 036402 5 FTAIVGSGILALPWSVAQLGWILGLMILVAFAAIT-YYTAILLSDCYRTPDPI-NGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 5 ~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~-~~s~~~l~~~~~~~~~~-~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
+++++|.+ .+|.++++.|.. +++..++.+.+. .-....+.|.... .|+ .| .-..-.++++||+.+++...
T Consensus 19 ~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~-~P~~aG----G~Y~w~~~~~G~~~gf~~~w 90 (496)
T PRK15238 19 FTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSA-FKDEKG----GIYSWMNKSVGPKFAFIGTF 90 (496)
T ss_pred HHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCC----cHHHHHHHHcCchHHHHHHH
Confidence 35666754 579889888875 666666666554 3455667785443 232 22 33445677899998876554
Q ss_pred HHHHHHHhhHHHHHHHHHH-HHHHHHHhhcccCCCCCcccccccc-hhhHhh--hHHHHHhhcCCCCchhhHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAI-SVANLKRSTCYHKKGENAKCHVSGH-LYMLTY--GAIETILSQCPNLEKATFLSIIAAVT 158 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~-~~~ii~--~~~~~pl~~~~~l~~l~~~s~~~~~~ 158 (440)
..+................ ....++.. + ..........+.. ...++. .+.+.-....|.++..++++.++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~ 167 (496)
T PRK15238 91 MWFASYIIWMVSTASKIWIPFSTFIFGK--D-TTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSIGGIA 167 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc--c-hhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 4333322221111111000 00111110 0 0000000011111 111111 11123334456777777777665443
Q ss_pred HHHHHHHHHHHH-HHHhhhcccccccccceecccc-ccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhh
Q 036402 159 SLVYSSIALCLS-IAKIFSHRKIKGNLMVMKAGVD-VASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMM 236 (440)
Q Consensus 159 ~~~~~~i~v~~~-i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 236 (440)
.+...++.++.. +.....+...+.+....++.++ .+......+...++....|+|.+........+|+|||+ |++
T Consensus 168 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~ 244 (496)
T PRK15238 168 VMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNF 244 (496)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccc
Confidence 332211111111 1111111111111100001000 01111124567788889999999999999999999985 889
Q ss_pred hhHHHHHHHHHHHHHHHhhhhc
Q 036402 237 KKVSLYAIGATALFYISLGCMG 258 (440)
Q Consensus 237 ~~~~~~a~~~~~~~Y~~~g~~g 258 (440)
+|++..+...+.++|.+.....
T Consensus 245 p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 245 PKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999764433
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.03 E-value=2.2e-07 Score=93.97 Aligned_cols=272 Identities=16% Similarity=0.173 Sum_probs=162.6
Q ss_pred hhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 4 AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
....++|.|++.+|......+ .......++.+++.......+.|..+. .|+.| .+.+-.++.+||+..+.+...
T Consensus 24 ~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~~G----G~y~~~~~~~g~~~~~~~~~~ 97 (466)
T COG0531 24 GVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPSAG----GAYAYAKRALGPRLGFLAGWL 97 (466)
T ss_pred HHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC----CeeeehhhhcCcchHHHHHHH
Confidence 356788899999988888776 222333455666666667777776653 34443 445556888999988888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhh--hHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTY--GAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~--~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
.++.......+.....++.+..+.+... .. ......+..+. .....-+...+..+...+...+..+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~ 169 (466)
T COG0531 98 YLLAYVIALAAIAIGAASYLSYLFPGPG--LL------SIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKII 169 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcch--hh------cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887666654210 00 00101111111 22222333345566666666666555554
Q ss_pred HHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
..++.....+.....+. .+... +. .+......+...++....++|.+-....+..+|+|||. |+++|.+.
T Consensus 170 ~~i~~~i~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii 239 (466)
T COG0531 170 ILLIFIILGLFAFGFSN---GNLFA-PF---NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAII 239 (466)
T ss_pred HHHHHHHHHHHHhCccc---cccCC-Cc---ccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHH
Confidence 33333333233222211 11100 00 00112223678899999999999999999999999984 67899999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCC-CCCccccCCC--------CchHHHHHHHHHHHHHHHHhhhhcc
Q 036402 242 YAIGATALFYISLGCMGYAAYGTE-APGNILTGFY--------NVLWLVDIANIAVIIHLIGAYQVFA 300 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~gy~~fg~~-~~~~il~~~~--------~~~~~~~~~~~~~~~~~~~s~pl~~ 300 (440)
.+...+.++|...........+++ .... ..+.| ...+...+..+...+..+.+.....
T Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~ 306 (466)
T COG0531 240 LSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWI 306 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888777666642 1111 11111 1124455555666666666654333
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.02 E-value=5.2e-07 Score=91.73 Aligned_cols=221 Identities=11% Similarity=-0.042 Sum_probs=112.5
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCC----ceeehHHHHHHHHHhh
Q 036402 16 LPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPK----NVVVCGIMQYSLLWGT 91 (440)
Q Consensus 16 lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~----~~~l~~~~~~~~~~g~ 91 (440)
.+.+..+.|-...+...++.+++....+..+.|.... .|+.| ....-+++++|++ ..+++.....+.....
T Consensus 37 ~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~~G----g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~ 111 (482)
T TIGR00907 37 YNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPTSG----GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAG 111 (482)
T ss_pred HHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCCCc----cHHHHHHHhcccccccceeHHHHHHHHHHHHHH
Confidence 4566667777655777888888888899999995543 23333 3444556677654 3444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchh-hHhhh--HHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 036402 92 MIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLY-MLTYG--AIETILSQCPNLEKATFLSIIAAVTSLVYSSIALC 168 (440)
Q Consensus 92 ~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~ii~~--~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~ 168 (440)
+.+.....++++....... +... .+. ...+. ..+.. ....-+...+..|....+.....+..+...+++++
T Consensus 112 ~a~~~~~~~~~~~~~~~~~--~~~~---~~~-~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i 185 (482)
T TIGR00907 112 TASTDLSVAQLILGIVSLT--TPGR---EYI-PTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICI 185 (482)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCC---Ccc-ccCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555666665544211 1100 001 11111 11111 12222223334444444444433332221111111
Q ss_pred HHHHHhhhc-ccccccccceeccccc-cchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHHHHH
Q 036402 169 LSIAKIFSH-RKIKGNLMVMKAGVDV-ASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGA 246 (440)
Q Consensus 169 ~~i~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~ 246 (440)
..+.....+ +..+....+.. ++. ...+..+....++....|+|.+-.......+|+|||+ |+++|++..+..+
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~--~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i 260 (482)
T TIGR00907 186 TLLACKSPKFNDGKFVFTNFN--NSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAI 260 (482)
T ss_pred hhhccCCCCCCChhhhheeee--CCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHH
Confidence 111111000 00000111111 110 0011223455666778899999999999999999995 8899999998887
Q ss_pred HHHHHH
Q 036402 247 TALFYI 252 (440)
Q Consensus 247 ~~~~Y~ 252 (440)
..+++.
T Consensus 261 ~~~~~~ 266 (482)
T TIGR00907 261 GIVTGF 266 (482)
T ss_pred HHHHHH
Confidence 665443
No 47
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.00 E-value=5.9e-07 Score=91.53 Aligned_cols=221 Identities=10% Similarity=0.039 Sum_probs=109.5
Q ss_pred hhhchHHHHHHhhChhHHHHHHHHHHHHHHH--HHHHHHhcccCCC-CCCCCCcccHHHHHHHHcCCCceeehHHHHHHH
Q 036402 11 SGILALPWSVAQLGWILGLMILVAFAAITYY--TAILLSDCYRTPD-PINGSRNYTYMDAVRALLGPKNVVVCGIMQYSL 87 (440)
Q Consensus 11 ~GiL~lP~~f~~~G~~~gii~li~~~~~~~~--s~~~l~~~~~~~~-~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~ 87 (440)
.++-.+| .+++.|+ +.+...+++.+.+. ......|...... +.+ ....-+++++|++.+++..+..++.
T Consensus 20 ~~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-----G~y~wv~~a~G~~~Gf~~~~~~W~~ 91 (507)
T TIGR00910 20 LAVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-----GIFAWVSNTLGERFGFAAIFFGWFQ 91 (507)
T ss_pred HHHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-----CeeeehhhccCccHHHHHHHHHHHH
Confidence 3566778 5778884 44445555555433 6667777554321 222 3334458899999888776666665
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhh---HHHHHhhcCCCCchhhHHHHHHHHHHHHH-H
Q 036402 88 LWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYG---AIETILSQCPNLEKATFLSIIAAVTSLVY-S 163 (440)
Q Consensus 88 ~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~---~~~~pl~~~~~l~~l~~~s~~~~~~~~~~-~ 163 (440)
...............+...... .. .. .+.+...+.. +..+-+...+..+...+++.++.+..... .
T Consensus 92 ~~~~~~~~~~~~~~~~~y~~~~---~~------~~-~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~ 161 (507)
T TIGR00910 92 IAIGFIPMIYFILGALSYILKF---PA------LN-EDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPA 161 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---ch------hc-cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5432222221111111211110 00 00 1122222221 11223334455555555554433222111 1
Q ss_pred HHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHH
Q 036402 164 SIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYA 243 (440)
Q Consensus 164 ~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a 243 (440)
++++...+.....+++...+...-++.|+ ....+....+....|+|.+-.......+|+|||+ |+++|++..+
T Consensus 162 ~ili~l~~~~~~~g~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~ 234 (507)
T TIGR00910 162 FILFALAAAYFHGGAPIAIEIDSHAFFPD----FSKVGTLVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILL 234 (507)
T ss_pred HHHHHHHHHHHhCCCccccCCcHHhcCCC----cccccHHHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHH
Confidence 12222222221222111111100000011 1112334455557999999999999999999995 7899999999
Q ss_pred HHHHHHHHHHhhh
Q 036402 244 IGATALFYISLGC 256 (440)
Q Consensus 244 ~~~~~~~Y~~~g~ 256 (440)
..+..++|.+..+
T Consensus 235 ~i~~~~l~~l~~~ 247 (507)
T TIGR00910 235 MIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888876443
No 48
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.92 E-value=6e-06 Score=83.76 Aligned_cols=237 Identities=11% Similarity=-0.028 Sum_probs=126.3
Q ss_pred hhhhhhchH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHH
Q 036402 8 IVGSGILAL-PWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYS 86 (440)
Q Consensus 8 ~iG~GiL~l-P~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~ 86 (440)
.+|+|+.+. ..+..+.|- ..+...++.++........+.|.... .|+.| ....-+++.+||...+++.....+
T Consensus 29 ~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aG----G~Y~~~~~~~g~~~gf~~gW~~~~ 102 (475)
T TIGR03428 29 SILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISG----AIYQWSRRMGGEVIGWFAGWFMII 102 (475)
T ss_pred HHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----CHHHHHHHHcCccccHHHHHHHHH
Confidence 367888875 455556665 46677778888888888888885543 23333 334456778999998888888777
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhc-ccCCCCCcccccccchhhHhh-hHHHHHhhcCCCCchhhHHHHHHHHHHHHHHH
Q 036402 87 LLWGTMIGYTITTAISVANLKRSTC-YHKKGENAKCHVSGHLYMLTY-GAIETILSQCPNLEKATFLSIIAAVTSLVYSS 164 (440)
Q Consensus 87 ~~~g~~i~y~i~~~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~ii~-~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 164 (440)
................+..+.+... .+..+.........+.+.+.. .+.+.-+...+..|...++..+.....+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~ 182 (475)
T TIGR03428 103 AQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVL 182 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 6554444444444444444322110 000000000000001111111 11222223334556666665555444332222
Q ss_pred HHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHHH
Q 036402 165 IALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAI 244 (440)
Q Consensus 165 i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~ 244 (440)
++++..+... +++ ........ ..++. ......+..+.....|+|.+-.....+.+|+|||+ |+.+|.+..+.
T Consensus 183 ~iii~~~~~~-~~~-~~~~f~~~-~~~~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~ 254 (475)
T TIGR03428 183 AVIGVLFTHA-QRG-PGVVFDTS-VTGAS--PGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTAL 254 (475)
T ss_pred HHHHHHHHhc-CCC-cceeeecC-CCCCC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHH
Confidence 2222211111 111 00000000 00000 11123455677778899999999999999999995 88999999999
Q ss_pred HHHHHHHHHhhhhc
Q 036402 245 GATALFYISLGCMG 258 (440)
Q Consensus 245 ~~~~~~Y~~~g~~g 258 (440)
.+..++|.+.-+..
T Consensus 255 ~i~~~~~~~~~~~~ 268 (475)
T TIGR03428 255 SVSALGGGLMILGA 268 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 98877665544433
No 49
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.90 E-value=3.1e-07 Score=88.09 Aligned_cols=273 Identities=14% Similarity=0.076 Sum_probs=171.9
Q ss_pred chhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 3 HAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
-+..+++|+|++.+|....+.+- -|.+..++.+........+..+..++. | ..+..|..++.+||+.+++..+
T Consensus 10 l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~-p-----~~~l~~~~~~~~Gk~lg~ii~~ 82 (320)
T PF03845_consen 10 LLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRF-P-----GKTLVEISEKLFGKWLGKIINL 82 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHC-C-----CCCHHHHHHHHhCcHHHHHHHH
Confidence 35678999999999999876641 222334444444444444444433321 1 1289999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhH-hhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYML-TYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
......+......+...+|.+....-. +...+.+ ...+++.--+-.+.++.+...+.+-....+.
T Consensus 83 ~~~l~~l~~~~~~lr~~~~~i~~~~lp--------------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 83 LYILYFLLISALVLREFSEFIKTYLLP--------------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--------------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 998888888888888888888775411 1122222 2233333344467788888866555444432
Q ss_pred HHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHH
Q 036402 162 YSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241 (440)
Q Consensus 162 ~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 241 (440)
...++. ....++ .+++... +....+..+..++.....+.|.+-..+.-+...+|+| ||.+|...
T Consensus 149 ~~~~i~----~~~~~~----~~~~~l~----P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~ 212 (320)
T PF03845_consen 149 LLLLIL----LLSIPN----IDWDNLL----PVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLL 212 (320)
T ss_pred HHHHHH----HHhccc----CCHHHee----CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHH
Confidence 221111 111221 1122211 1123344577888888888898888888899999988 88999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCcccc-------CCCCc---hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 036402 242 YAIGATALFYISLGCMGYAAYGTEAPGNILT-------GFYNV---LWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWL 311 (440)
Q Consensus 242 ~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~-------~~~~~---~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 311 (440)
.+.....++|...-......||.+..++... ..+-+ +..-.+.-.......+.+..+..+...+.+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f 292 (320)
T PF03845_consen 213 IAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLF 292 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888888888653221111 11111 1223344555666666677777777777777766
Q ss_pred h
Q 036402 312 E 312 (440)
Q Consensus 312 ~ 312 (440)
+
T Consensus 293 ~ 293 (320)
T PF03845_consen 293 K 293 (320)
T ss_pred C
Confidence 3
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.90 E-value=6.2e-09 Score=88.41 Aligned_cols=214 Identities=15% Similarity=0.292 Sum_probs=131.4
Q ss_pred hhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccc-------------CCCCC--------------
Q 036402 4 AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYR-------------TPDPI-------------- 56 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~-------------~~~~~-------------- 56 (440)
++|-++|+|.|++|.+|+..||.+++.++.+.+++++.+....+++.. ..+++
T Consensus 21 mfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~dvli 100 (319)
T KOG3832|consen 21 MFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDDVLI 100 (319)
T ss_pred hhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCcEEE
Confidence 567899999999999999999999999999999999999999998540 00000
Q ss_pred -----------------CC-------CCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHh---
Q 036402 57 -----------------NG-------SRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRS--- 109 (440)
Q Consensus 57 -----------------~~-------~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~--- 109 (440)
.| .+..+.+|++...|.|.+--+..+++.++++|.+..|...+-....++.-.
T Consensus 101 ~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa~g 180 (319)
T KOG3832|consen 101 ADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAAIG 180 (319)
T ss_pred ecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhhcC
Confidence 00 012356778888899999999999999999999999987766655554421
Q ss_pred --hcc-cCC---CCCccccc-------ccchhhHhhhH-HHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036402 110 --TCY-HKK---GENAKCHV-------SGHLYMLTYGA-IETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIF 175 (440)
Q Consensus 110 --~~~-~~~---~~~~~~~~-------~~~~~~ii~~~-~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~ 175 (440)
-|- +.. +....|+- -++++++++.+ +.+|+.+. ++++.+++..+..+.-..- ......+....
T Consensus 181 ~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~--~~~g~~l~tmq 257 (319)
T KOG3832|consen 181 ADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAA--FILGISLATMQ 257 (319)
T ss_pred CccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHh--ccchhhhhhhh
Confidence 110 000 01112221 12455555544 34476654 3455555544443332211 11111111110
Q ss_pred hcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCC
Q 036402 176 SHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSP 229 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 229 (440)
.+ .+.. +..|+....-++-+.++...|+|.+|...|.....++.+
T Consensus 258 ae--edaa-------~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 258 AE--EDAA-------AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hc--cccc-------ccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 00 0110 011223334466778899999999999999888777643
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.83 E-value=1.4e-08 Score=103.11 Aligned_cols=290 Identities=14% Similarity=0.116 Sum_probs=166.4
Q ss_pred hhhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 5 FTAIVGSGILA-LPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 5 ~~~~iG~GiL~-lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
+.+++|+|++. .+.+..+.|.....+.+++.+++....+.-+.|..++.. +.| ++.+.+++.+|+..+..+.+.
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeHH
Confidence 56789999885 788999999977788899999999999999999766533 333 566777889999999988888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCc-ccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENA-KCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
.++.............+..++..-. ..+.. .+.+.. .+..+..+++..+.+ ...+........-....+..
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~ 153 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGY------FPGLPSTWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIA 153 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccc------cccccccccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhH
Confidence 7777776666666666655544300 00000 011100 122223222222222 22333333222221111111
Q ss_pred HHHHHHHH-HHHhhhcccccc-----ccc---ceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccc
Q 036402 163 SSIALCLS-IAKIFSHRKIKG-----NLM---VMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPEN 233 (440)
Q Consensus 163 ~~i~v~~~-i~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 233 (440)
.+..++.. +......++.+. +.. ..+-+++.+...+..+++.++....++|.+-......-+|.|||+
T Consensus 154 li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~--- 230 (478)
T PF00324_consen 154 LIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR--- 230 (478)
T ss_pred hhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch---
Confidence 11111111 111111111111 000 011000001122345789999999999999999999999999995
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccc---------c--CCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q 036402 234 KMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNIL---------T--GFYNVLWLVDIANIAVIIHLIGAYQVFAQP 302 (440)
Q Consensus 234 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il---------~--~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 302 (440)
|+++|.+..++....++|.......-...+.+..+..- . +.....+...+.++....+.+.+.--..+.
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 89999999999999999998888766666654322111 1 111223345555666666666555544455
Q ss_pred hHHHHHHH
Q 036402 303 IFAMHEKW 310 (440)
Q Consensus 303 ~~~~~~~~ 310 (440)
..+.+..+
T Consensus 311 ~sR~l~am 318 (478)
T PF00324_consen 311 ASRLLYAM 318 (478)
T ss_pred cceeehhh
Confidence 54544443
No 52
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.73 E-value=7.4e-07 Score=90.33 Aligned_cols=295 Identities=12% Similarity=0.018 Sum_probs=178.8
Q ss_pred hhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CCCcccHHHHHHHHcCCCceeehHH
Q 036402 5 FTAIVGSGIL-ALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPIN-GSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 5 ~~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~-~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
+.+++|+|+. ....+.++.|-..-++..++.+...+.++..+.|-.-. -|+. | ++..-+.+..|+-...++..
T Consensus 42 iGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~-~P~~aG----s~~~ya~~~i~e~~aF~~gW 116 (554)
T KOG1286|consen 42 IGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVR-FPVSAG----SFYTYAYRFVGESLAFAIGW 116 (554)
T ss_pred ecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHhee-cccccc----cceeeeeeeeCcHHHHHHHH
Confidence 4678999998 46899999998888888999999999999999994433 2332 2 23333455778888888888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHh-h-hHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLT-Y-GAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii-~-~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
-..+.....+.+-....+.+++... . ....... ....+...|..+ . .++++.+.-.+-..+.++......+.+.
T Consensus 117 ny~l~y~i~~a~e~~a~s~~~~~w~-~-~~~~~~~--~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~ 192 (554)
T KOG1286|consen 117 NYLLEYVIGLAAEARAWSSYLDYWT-G-ASLIGIL--VDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTA 192 (554)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-c-ccccccc--ccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHH
Confidence 8888888888888888888888765 1 0000000 001111222222 2 2233344444443444444433333322
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceec-c-ccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhh
Q 036402 161 VYSSIALCLSIAKIFSHRKIKGNLMVMKA-G-VDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKK 238 (440)
Q Consensus 161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 238 (440)
.-.++...........+++. ++.+.++ . |.......+.+....+-+..|+|.+-..+-...+|-|||+ |..++
T Consensus 193 v~~~Il~iVi~~G~~~~d~~--~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ 267 (554)
T KOG1286|consen 193 VGFIILAIVIIAGGGPADVK--NWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPK 267 (554)
T ss_pred HHHHHhheeeecCCCcCCcC--CCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccH
Confidence 11111111101111121110 1222111 1 1111122256788999999999999999999999999995 89999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccc--cCCC-CCCcccc--------CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 036402 239 VSLYAIGATALFYISLGCMGYAA--YGTE-APGNILT--------GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMH 307 (440)
Q Consensus 239 ~~~~a~~~~~~~Y~~~g~~gy~~--fg~~-~~~~il~--------~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~ 307 (440)
++..++..++++|....+.--+. |.+. ..++... +.+.-.....+.++...+.+.++--..+++..+.+
T Consensus 268 ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l 347 (554)
T KOG1286|consen 268 AIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVL 347 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHH
Confidence 99999999999999877653332 2221 1111111 11111122237888888888888888888998888
Q ss_pred HHHHhh
Q 036402 308 EKWLES 313 (440)
Q Consensus 308 ~~~~~~ 313 (440)
..+.+.
T Consensus 348 ~amA~~ 353 (554)
T KOG1286|consen 348 YALAKD 353 (554)
T ss_pred HHHHhc
Confidence 877543
No 53
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.64 E-value=1.4e-05 Score=78.94 Aligned_cols=351 Identities=13% Similarity=0.097 Sum_probs=208.4
Q ss_pred hhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 5 FTAIVGSGIL-ALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 5 ~~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
+...||+|.+ +.-.+.+++|-...++..++.+.+.+..+..+.|.+... |..| +|...+.+..++-.+..+...
T Consensus 56 iGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~-P~sG----sF~~ya~rfvdpa~GFa~gWn 130 (541)
T COG0833 56 IGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY-PVSG----SFSTYATRFVDPAFGFALGWN 130 (541)
T ss_pred hccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC----chhhhhhhhcCchHHHHHHHH
Confidence 4678999987 799999999999999999999999999999999965542 3333 688888888888888888877
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhh--cCCCCchhhHHH-HHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILS--QCPNLEKATFLS-IIAAVTSL 160 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~--~~~~l~~l~~~s-~~~~~~~~ 160 (440)
.++.-.-++..-++..+..++...+. ..+...|..++.++++.+- -.|...+..+.- .+=++.++
T Consensus 131 Yw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii 198 (541)
T COG0833 131 YWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTII 198 (541)
T ss_pred HHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHH
Confidence 77777777777777777666654321 1344566666655554443 356666665543 33333222
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHH
Q 036402 161 VYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVS 240 (440)
Q Consensus 161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 240 (440)
.+.++.++ .+....++ +...-.--|..+-+-.+.+.++...+-+..|||.+...+---..|-+||+ |.++|++
T Consensus 199 ~Fii~gii-~~~Gg~~~---~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAi 271 (541)
T COG0833 199 GFIILGII-IICGGGPT---HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAI 271 (541)
T ss_pred HHHHHHHH-HhcCCCCC---CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHH
Confidence 22111111 11112222 11111100110112234466888999999999999999999999999985 7888988
Q ss_pred HHHHHHHHHHHHHhhh-hcccc-cCCC----------CCCccccCCC--CchHHHHHHHHHHHHHHHHhhhhcccchHHH
Q 036402 241 LYAIGATALFYISLGC-MGYAA-YGTE----------APGNILTGFY--NVLWLVDIANIAVIIHLIGAYQVFAQPIFAM 306 (440)
Q Consensus 241 ~~a~~~~~~~Y~~~g~-~gy~~-fg~~----------~~~~il~~~~--~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~ 306 (440)
.-.+-=..++|++.-+ +|... |.|. ..++...-+. +-.....+.|....++++.+=--.++...+.
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~ 351 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM 351 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence 8877777777774322 23332 3221 1111111111 1123567888888888888777777777788
Q ss_pred HHHHHhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHhhhhcchhhhhhh
Q 036402 307 HEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFP--FFNAILGLLGSISFWPLTVHLP 384 (440)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~~ilP 384 (440)
+..+-+++.-.+-+.+.+....| ..-+..+.+.-+++++-+..-. -++-++++.|... .++++-=
T Consensus 352 L~sLA~~g~APk~f~~~~r~GvP-----------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I 418 (541)
T COG0833 352 LYSLAKQGKAPKIFAKVDRRGVP-----------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSI 418 (541)
T ss_pred HHHHHhcCCCchHHHhhCCCCCc-----------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHH
Confidence 77766543222111111111112 2333344444444444444322 2555666655433 4555555
Q ss_pred hHHHHHHh
Q 036402 385 LRMYIEQA 392 (440)
Q Consensus 385 ~l~~l~~~ 392 (440)
++-|++-|
T Consensus 419 ~~shirFR 426 (541)
T COG0833 419 CLSHIRFR 426 (541)
T ss_pred HHHHHHHH
Confidence 67777754
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.39 E-value=0.0001 Score=68.22 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=94.1
Q ss_pred hhhhhhhhhch---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 5 FTAIVGSGILA---LPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 5 ~~~~iG~GiL~---lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
+.+++|+|.-+ +=.=|..-|+. |+.-.++++.+-..++..+.+..++.+ ..+|+|.-+..+||+..++.|
T Consensus 13 ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 13 IGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhhHHHHHHHH
Confidence 45788888776 34445556666 777778888888888888888766543 239999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAV 157 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~ 157 (440)
..+.+..+++++.-+-..|..+.+-+ ..+..+-.++...++..+.++++.+.+-.+..+-+-
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~--------------~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMF--------------GLPYWIGALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHh--------------CccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 99999999999988888887776643 122222224444455555566767777666544433
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.25 E-value=0.00033 Score=69.32 Aligned_cols=236 Identities=11% Similarity=0.031 Sum_probs=118.4
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHH
Q 036402 16 LPWSVAQLGWILGLMILVAFAAITYYTAILLSD-CYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIG 94 (440)
Q Consensus 16 lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~-~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~ 94 (440)
+++....+|-..-.=..++.+.++...+.-|.| |+..++ .|. -|-- +...-+|+.+.++....--..+...+.
T Consensus 73 m~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt--sGg---Ly~w-aa~lap~k~~~~~sw~~Gw~~~~g~~~ 146 (550)
T KOG1289|consen 73 MAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT--SGG---LYFW-AAVLAPPKYGPFASWVTGWLNYLGQAT 146 (550)
T ss_pred eeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC--CCc---HHHH-HHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 344444444443333356677788888888888 555433 232 2332 333447776666555443322222222
Q ss_pred HHHHHHHHHHHHHHh-hcccCCCCCccccccc-chhhHhhhH-HHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 036402 95 YTITTAISVANLKRS-TCYHKKGENAKCHVSG-HLYMLTYGA-IETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSI 171 (440)
Q Consensus 95 y~i~~~~~l~~i~~~-~~~~~~~~~~~~~~~~-~~~~ii~~~-~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i 171 (440)
..-.+.....+.+.. ...+ ++.+...+ +.+.+..++ ++.-+......+-+++++.+++...++..++..+...
T Consensus 147 ~~aSi~~S~A~~i~~~v~l~----np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~ll 222 (550)
T KOG1289|consen 147 GVASITYSLAQLILGAVSLT----NPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLL 222 (550)
T ss_pred hchhhhHHHHHHHHHHHhhc----CCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111122222222211 1111 11212222 233322222 2222222223466677776666666544444433322
Q ss_pred HHhhhccccccccc-ceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHH
Q 036402 172 AKIFSHRKIKGNLM-VMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALF 250 (440)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~ 250 (440)
...-++.+.+.+.. ..+++++....+..|++.-++-.-.+.+.|-....++.+|-||+. ++.+|.+..+..+.+++
T Consensus 223 a~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~ 299 (550)
T KOG1289|consen 223 AASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFIL 299 (550)
T ss_pred hccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHH
Confidence 22222211221111 111111112223667787888888899999999999999999985 88999999888888777
Q ss_pred HHHhhhhcccccCC
Q 036402 251 YISLGCMGYAAYGT 264 (440)
Q Consensus 251 Y~~~g~~gy~~fg~ 264 (440)
=..+-+.-...-++
T Consensus 300 gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 300 GWIIIIGIAYTIPD 313 (550)
T ss_pred HHHHHHHHHHhccc
Confidence 66555555555554
No 56
>PRK11375 allantoin permease; Provisional
Probab=98.04 E-value=0.0045 Score=62.69 Aligned_cols=239 Identities=8% Similarity=0.007 Sum_probs=125.0
Q ss_pred ccHHHHHHHHcCCCceeehHHHHH-HHHHhhHHHHHHHHHHHHHHHHHhhcccCC--CCC-cccccccchh--hHhhhHH
Q 036402 62 YTYMDAVRALLGPKNVVVCGIMQY-SLLWGTMIGYTITTAISVANLKRSTCYHKK--GEN-AKCHVSGHLY--MLTYGAI 135 (440)
Q Consensus 62 ~~y~~l~~~~~G~~~~~l~~~~~~-~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~--~~~-~~~~~~~~~~--~ii~~~~ 135 (440)
.++.-+.|..||++|..+..+... +..++-........++.+..++.....+.. +++ +....+...+ .+++.++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 388999999999999999888884 577777777788888888877654321111 100 0011111112 2344555
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhc-
Q 036402 136 ETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYT- 214 (440)
Q Consensus 136 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~- 214 (440)
..++.+ ...+.++++..++....+..........+... +........+-+ +.+.....+.+..++...+=++.
T Consensus 169 ~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~----g~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vig~~~~ 242 (484)
T PRK11375 169 NVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV----GIGPIFDYIPSG-IQKAENSGFLFLVVINAVVAVWAA 242 (484)
T ss_pred HHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchhhccCccc-ccCCcchHHHHHHHHHHHHHHHHH
Confidence 666654 45777777777776655432222222222221 111111000000 01112223455555544444444
Q ss_pred cchhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhc----ccccCCCCCC--ccccCCCCchHHHHHHHHHH
Q 036402 215 YSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMG----YAAYGTEAPG--NILTGFYNVLWLVDIANIAV 288 (440)
Q Consensus 215 ~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g----y~~fg~~~~~--~il~~~~~~~~~~~~~~~~~ 288 (440)
.-.+.|.+.|..|++ |+-.+....+..+...+...+|+.. ...+|+...+ +++.++ .+.....++-+..
T Consensus 243 ~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~-~~~~~~~~a~l~~ 317 (484)
T PRK11375 243 PAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRW-DSLFASFFAVLVI 317 (484)
T ss_pred HHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh-cchHHHHHHHHHH
Confidence 344889999999987 6555655556666655554444432 3345543222 333333 1223334444455
Q ss_pred HHHHHHh-hhhcccchHHHHHHHH
Q 036402 289 IIHLIGA-YQVFAQPIFAMHEKWL 311 (440)
Q Consensus 289 ~~~~~~s-~pl~~~p~~~~~~~~~ 311 (440)
.+....+ ..-+.+|.-..+.+.+
T Consensus 318 v~a~~~tN~~~N~ys~~~~l~~l~ 341 (484)
T PRK11375 318 LMTTISTNATGNIIPAGYQIAALA 341 (484)
T ss_pred HHHHHHHHHHhhcccHHHHHHHhC
Confidence 5555554 3356667767666655
No 57
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.03 E-value=0.002 Score=64.75 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=108.2
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcC
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQC 142 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 142 (440)
++..+.|..||++|..+..++..+...|-........++.+..++.....+..............+.+++..+.+++...
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 67788999999999999999999999999999999999999888765321100000000001112223444555565555
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHh-ccchhHHH
Q 036402 143 PNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAY-TYSMMLLE 221 (440)
Q Consensus 143 ~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~ 221 (440)
...+-.+.....+....+. ...+.+....+..+. .+....+ ++.+.....+++..+++..+=.+ ..-.+.+.
T Consensus 157 ~g~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~g~-~~~~~~~--~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~D 229 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVPPFA----AFGMLIWALSKAHGK-GPLGELT--GTLHGSTGAWAFLYALSLVIGSFATWATNAPD 229 (442)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCC-CccccCC--CCCCcchhHHHHHHHHHHHHHHHHHHHcCchh
Confidence 4445445555555433221 111111111111111 1110000 00111223455666655533332 55568999
Q ss_pred HHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccc----cCCC
Q 036402 222 IQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAA----YGTE 265 (440)
Q Consensus 222 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~----fg~~ 265 (440)
+.|.+|++ ++-.+....++.........+|+.+... +|+.
T Consensus 230 ysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 230 FTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred hhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999987 5555556677777777777777776655 7654
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.98 E-value=0.011 Score=58.25 Aligned_cols=250 Identities=16% Similarity=0.094 Sum_probs=137.5
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHH
Q 036402 23 LGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAIS 102 (440)
Q Consensus 23 ~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~ 102 (440)
.++..++...++-.++...-.-+...... +.| .++.-+.|..||++|..+..+...+...|-........++.
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~G---l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~ 98 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DTG---LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKA 98 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccC---cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444443333333333222 222 37888999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 036402 103 VANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKG 182 (440)
Q Consensus 103 l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~ 182 (440)
+..+.+... + .+ +...+.++..++..+.+. ...|.++++..++..+.....+..... ...+.+..
T Consensus 99 l~~~~~~~~-~---~~-----~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~- 163 (386)
T TIGR02358 99 ASLLGGRLF-G---EE-----SPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATLWLLVV----VFSKADLS- 163 (386)
T ss_pred HHHHHHHhc-C---CC-----chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccchh-
Confidence 999875421 1 10 112333444444555554 356777777777766554322221111 11111111
Q ss_pred cccceeccccccchhhhhhHHHHHHHHHHH-hccchhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccc
Q 036402 183 NLMVMKAGVDVASSKKIWHAFQALGNIAFA-YTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAA 261 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 261 (440)
+... .+.. .++..+++...-. -......+.+.|..|+| ||.-+....+..+...+-..+|......
T Consensus 164 ~~~~------~~~~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a 230 (386)
T TIGR02358 164 ELWN------RAGD---MSFAVAVELVIAMPLSWLPLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLA 230 (386)
T ss_pred hhcC------CCCC---ccHHHHHHHHHHHHHHHHHHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0111 2222233222111 12334588999998877 7777778888888888888888877666
Q ss_pred cCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Q 036402 262 YGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWL 311 (440)
Q Consensus 262 fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 311 (440)
.++..+.+++... +. ....-+...+....+-..+.++.-..+.+.+
T Consensus 231 ~~~~d~~~~~~~~---g~-~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 231 TGQTDIISILAGA---GL-GIPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred cCCCCHHHHHHhc---cH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5543222222211 11 1223334444444555555666666665554
No 59
>PRK12488 acetate permease; Provisional
Probab=97.84 E-value=0.054 Score=56.00 Aligned_cols=128 Identities=17% Similarity=0.191 Sum_probs=77.5
Q ss_pred hchHHHHHHhhChhHHHHHHHHHHHHHHHH-HHHHHhcccCCCCCCCCCcccHHHHHHHHcC-CCceeehHHHHHHHHHh
Q 036402 13 ILALPWSVAQLGWILGLMILVAFAAITYYT-AILLSDCYRTPDPINGSRNYTYMDAVRALLG-PKNVVVCGIMQYSLLWG 90 (440)
Q Consensus 13 iL~lP~~f~~~G~~~gii~li~~~~~~~~s-~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G-~~~~~l~~~~~~~~~~g 90 (440)
.++.|-...+.|+- +. .......+.+.- ..++.+-.++. + .+|..|.-++=|| |+.|.+..+...+....
T Consensus 88 flG~~G~~y~~G~~-~~-~~~~g~~~g~~~~~~~~a~~lr~~----g--~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~ 159 (549)
T PRK12488 88 FLGISAMMFMNGYD-GL-LYALGVLAGWPIILFLIAERLRNL----G--KYTFADVVSYRLAQGPVRLTAAFGTLTVVLM 159 (549)
T ss_pred HHHHHHHHHHhChh-HH-HHHHHHHHHHHHHHHHHHHHHHHC----C--CcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 45788777777764 22 111111122211 22233322221 1 3589998887777 56888887777777777
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 91 TMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 91 ~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
.....+...|..++.+. .++...-+++..+++..-+..-.++...+...+..+.++.-
T Consensus 160 yl~~q~~g~g~il~~l~--------------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~~ 217 (549)
T PRK12488 160 YLVAQMVGAGKLIELLF--------------GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLLSG 217 (549)
T ss_pred HHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 77777777887777664 22233444555666666677788999888888876655443
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.79 E-value=0.0041 Score=61.75 Aligned_cols=136 Identities=13% Similarity=0.159 Sum_probs=77.2
Q ss_pred hhhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCc--eeehH
Q 036402 5 FTAIVGS-GILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKN--VVVCG 81 (440)
Q Consensus 5 ~~~~iG~-GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~--~~l~~ 81 (440)
..+.+|+ .+++.|-...+.|+.. ....+..+.........+.+-.++. +..|..|.-++-+|++. +.+..
T Consensus 18 ~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~------~~~T~~e~~~~Ryg~~~~~~~~~~ 90 (406)
T PF00474_consen 18 VATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRS------GAVTIPEYLEKRYGSKALLRILAA 90 (406)
T ss_dssp HHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHT------T--SHHHHHHHHT-HHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhccc------chhhhhhhhhhhcCCchhhhhhcc
Confidence 3344444 4567888888888863 3333333333334444555544422 13499999999999998 66666
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
+...+.........+...+..++.+. .++....+++..++++.....-.++...+...+..+.++.
T Consensus 91 i~~i~~~~~~~~~q~~~~~~~~~~~~--------------gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~ 156 (406)
T PF00474_consen 91 IIIIVFMIPYLAAQLVGGGALLSVLF--------------GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMII 156 (406)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHT--------------T--HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHH
T ss_pred cccchhhhhhhhccccccccchhhcc--------------chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHH
Confidence 66666666777777777777777654 2333444455565666677777788888887777665543
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.78 E-value=0.06 Score=54.82 Aligned_cols=131 Identities=14% Similarity=0.043 Sum_probs=86.1
Q ss_pred hhhhchHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcC-CCceeehHHHHH
Q 036402 10 GSGILALPWSVAQLGWILGLMILV---AFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLG-PKNVVVCGIMQY 85 (440)
Q Consensus 10 G~GiL~lP~~f~~~G~~~gii~li---~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G-~~~~~l~~~~~~ 85 (440)
|...++.|-...+.|+....+... .......+-...+.+-.++ . +..|..|.-++-|| |..|.+..+...
T Consensus 56 ~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~----~--~~~T~~d~l~~Rf~s~~lr~l~ali~i 129 (493)
T COG0591 56 GWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA----R--GATTIPDFLEARFGSKILRILSALIII 129 (493)
T ss_pred HHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c--CCccHHHHHHHHcCChHHHHHHHHHHH
Confidence 366778888888888874333333 2333333344444443322 1 24599999999999 889999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 86 SLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 86 ~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
+..+.-+...+...++.++.... .+...-.++.+.++..-...-.+++..+...+-...+.
T Consensus 130 v~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~ 190 (493)
T COG0591 130 VFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIML 190 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 99999999999999988855432 12222233445555555666677788887776655544
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.67 E-value=0.088 Score=53.60 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=58.6
Q ss_pred cccHHHHHHHHcCCCc-eeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHh
Q 036402 61 NYTYMDAVRALLGPKN-VVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETIL 139 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~-~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl 139 (440)
..|..|..++-+|++. +.+..+...+..+......+...+..++.+. .++....+++..++++..
T Consensus 107 ~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------------gi~~~~~iii~~~iv~iY 172 (483)
T PRK09442 107 AVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------------GISYETGLLIFGITVALY 172 (483)
T ss_pred CccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHH
Confidence 3599999999888764 5555555555555666666777777777654 223344445556666677
Q ss_pred hcCCCCchhhHHHHHHHHHHHH
Q 036402 140 SQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 140 ~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
.....++...+...+..+..+.
T Consensus 173 t~~GGl~av~~TD~iQ~~i~~~ 194 (483)
T PRK09442 173 TAFGGFRAVVLTDALQGIVMLV 194 (483)
T ss_pred HHhccHHHHHHHHHHHHHHHHH
Confidence 7788888888888887665543
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.64 E-value=0.037 Score=55.01 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=80.0
Q ss_pred hhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCC-ceeehHHHHHHHHH
Q 036402 11 SGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPK-NVVVCGIMQYSLLW 89 (440)
Q Consensus 11 ~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~-~~~l~~~~~~~~~~ 89 (440)
...++.|....+-|+. +....+...........+..+..++. +..|..|..++-+|++ .+.+..+...+..+
T Consensus 22 ~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~ 94 (407)
T TIGR00813 22 SQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN------GAYTMPEYLEKRFGKRILRGLSVLSLILYIF 94 (407)
T ss_pred HHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc------CCCchhHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3445677777777753 22222222222333444444443321 1459999999999984 66666677777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 90 GTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 90 g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
......+...+..++.+.+ ++....+++..++++.....-.++...+...+..+.++.
T Consensus 95 ~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~ 152 (407)
T TIGR00813 95 LYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 8888888888888877652 222333444455555666777888888888887665543
No 64
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.018 Score=56.80 Aligned_cols=213 Identities=14% Similarity=0.093 Sum_probs=117.7
Q ss_pred HHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCC
Q 036402 66 DAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNL 145 (440)
Q Consensus 66 ~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l 145 (440)
.++|..||++|.++..+.+.+.+.|-...-.+..++...+. ...+..+++++..+++...+.. ..
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~--------------~~~~~~~~ili~g~l~~l~~if-G~ 149 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG--------------TGLPVWAGILIIGVLMTLVTIF-GY 149 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC--------------CCCcHHHHHHHHHHHHHHHHHH-hH
Confidence 46788999999999999999999999998888888762110 0334456666666666666655 23
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccceeccccccchhhhhhHHHHHHHHHHHh-ccchhHHHHH
Q 036402 146 EKATFLSIIAAVTSLVYSSIALCLSIAKIFS-HRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAY-TYSMMLLEIQ 223 (440)
Q Consensus 146 ~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~ 223 (440)
+.++.++..+....+. .....+..... ....+.... ....+..++..+++...=.+ ..-+....+.
T Consensus 150 r~l~~l~~~a~~~~~~----lf~~l~~~~~~~~~~~~~~~~--------~~~~~~~~fl~a~slv~g~~~sw~~~~aDys 217 (442)
T COG1457 150 RALHKLERIAVPLLLL----LFLYLLALLFRSKGGLDALWV--------KGPTSPLSFLSALSLVIGSFASWGPYAADYS 217 (442)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhcccccceeec--------cCCCcchhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4444444444333321 11111222222 221111111 00111123333333322222 5567788899
Q ss_pred hhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccccCCCC-CCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q 036402 224 DTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEA-PGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQP 302 (440)
Q Consensus 224 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 302 (440)
|.+|+|++ +|.-.....+......+-+.+|.....+-|+.. ..+....+.+ +...+-+...+....+--...++
T Consensus 218 Ry~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYs 292 (442)
T COG1457 218 RYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYS 292 (442)
T ss_pred hhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHH
Confidence 99998832 355556666677777777788888888877665 3333333311 34444445555555554455555
Q ss_pred hHHHHHHH
Q 036402 303 IFAMHEKW 310 (440)
Q Consensus 303 ~~~~~~~~ 310 (440)
..-.+.+.
T Consensus 293 a~ls~~~i 300 (442)
T COG1457 293 AGLSFANI 300 (442)
T ss_pred HHHHHHHh
Confidence 54444443
No 65
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.52 E-value=0.11 Score=50.96 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=107.4
Q ss_pred cccHHHHHH-HHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHh
Q 036402 61 NYTYMDAVR-ALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETIL 139 (440)
Q Consensus 61 ~~~y~~l~~-~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl 139 (440)
.+|++|... +.--++.|++..+...+..+.-.++.+.-.|..+..++. .+...-+++..+++..-
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------------v~~~vgv~ig~ilm~~Y 168 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------------VPYHVGVVIGGILMMVY 168 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------------CCceeehhhHhHHHHHH
Confidence 359999855 455566888888888888888888889999988888762 23344445556666677
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccceecccc-ccchhhhhhHHHHHHHHHHHhc
Q 036402 140 SQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKI----KGNLMVMKAGVD-VASSKKIWHAFQALGNIAFAYT 214 (440)
Q Consensus 140 ~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~ 214 (440)
.....++...|...+-.+..+....+...+...+...+... ..+.+...-+.+ .++-....+-...++...--..
T Consensus 169 vv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 169 VVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH
Confidence 77888999999987775544433333333322321111100 000000000000 0111111223333433333334
Q ss_pred cchhHHHHH-hhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccc
Q 036402 215 YSMMLLEIQ-DTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAA 261 (440)
Q Consensus 215 ~~~~~~~i~-~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 261 (440)
+..-+|++. |--.-| +.|+-||++.++......+|+..-+.|+.+
T Consensus 249 GTAgLPHil~RFfTvp--~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 249 GTAGLPHILMRFFTVP--DAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred ccCCCCeEEEEEEecC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566653 223333 558999999999999999999877766654
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=97.50 E-value=0.043 Score=54.39 Aligned_cols=173 Identities=16% Similarity=0.082 Sum_probs=93.5
Q ss_pred ccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhc
Q 036402 62 YTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQ 141 (440)
Q Consensus 62 ~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~ 141 (440)
.++.-+.|..||.+|..+..+...+...+-........++.+..+.+ .+...+.+++.++..+.+.
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------------~~~~~~~~i~~~l~~~~~~ 136 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------------LDINLLIVLSGLLMTVTAY 136 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999888888887776666666666555321 1112244555555555554
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHh-ccchhHH
Q 036402 142 CPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAY-TYSMMLL 220 (440)
Q Consensus 142 ~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~ 220 (440)
.. .+.++++...+........+.. ......+.+...+.... .+. ....+..++...+=.+ ..-.+.+
T Consensus 137 ~G-~~~i~~~~~~~~p~~~~~~~~~----~~~~~~~~~g~~~~~~~-----~~~--~~~~~~~a~~~~~g~~~~~~~~~~ 204 (404)
T PRK11017 137 FG-ISALTILSRIAVPAIALLGGYS----VWLAVNDVGGLDGLKAI-----VPA--EPLDFSAALTLVVGSFISGGTLTA 204 (404)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCchhhhhcC-----CCC--CcccHHHHHHHHHHHHHHhHhcCC
Confidence 42 4555555555544333211111 11122211111111110 000 1123444444433333 4456888
Q ss_pred HHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccccCC
Q 036402 221 EIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGT 264 (440)
Q Consensus 221 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~ 264 (440)
.+.|..|++ |+--.....+..+...+-..+|.......|+
T Consensus 205 DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 205 DFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred ChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888888876 5444455556666666666667665555554
No 67
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.47 E-value=0.18 Score=52.20 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=73.8
Q ss_pred hhhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhcccCCCCCCCCCcccHHHHHHHHcC-CCceeehHHHHHHHH
Q 036402 11 SGILALPWSVAQLGWILGLMILVAFAAITY-YTAILLSDCYRTPDPINGSRNYTYMDAVRALLG-PKNVVVCGIMQYSLL 88 (440)
Q Consensus 11 ~GiL~lP~~f~~~G~~~gii~li~~~~~~~-~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G-~~~~~l~~~~~~~~~ 88 (440)
...++.|-...+.|+- +....+ ...+.+ ....++.+-.|+. | .+|..|..++=|| |..|.+..+...+..
T Consensus 86 asflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr~----g--~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~ 157 (549)
T TIGR02711 86 ASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRNL----G--RYTFADVASYRLKQRPIRILSACGSLVVV 157 (549)
T ss_pred HHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHHc----C--CccHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 4566778777777764 222111 111111 2223334322221 2 3599998887776 446776666666666
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 89 WGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 89 ~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
.......+...+..++.++ .++...-+++..+++..-...-.++...+...+..+.++
T Consensus 158 ~~yl~~ql~g~g~il~~~~--------------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~ 215 (549)
T TIGR02711 158 ALYLIAQMVGAGKLIELLF--------------GLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVLLL 215 (549)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6666666777777766654 222333345555566666667778888888877765544
No 68
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.38 E-value=0.14 Score=50.83 Aligned_cols=210 Identities=13% Similarity=0.080 Sum_probs=108.4
Q ss_pred cccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCC--CCCc-ccccccchhhHhhhH-HH
Q 036402 61 NYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKK--GENA-KCHVSGHLYMLTYGA-IE 136 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~--~~~~-~~~~~~~~~~ii~~~-~~ 136 (440)
..+|+...|.-||-+|..+..+.-.+.-..---...-..+..+..++.....+.. +... ....+...++..+.. ++
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l 181 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVL 181 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHH
Confidence 4599999999999998876655554444443334455556666666655332211 1101 111122222211111 23
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHh-cc
Q 036402 137 TILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAY-TY 215 (440)
Q Consensus 137 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~ 215 (440)
-.++..+.++++|++-..+..++...+. .+.+....+.++. ....+.+ ....+.....|.+.......+=.| ..
T Consensus 182 ~~l~~~~g~~~Ir~~~~~a~p~~~~~~~---gl~Iw~~~~a~g~-~~~~~~p-~~~~~~~~~~w~~~~~~~~~v~~~Atl 256 (497)
T COG1953 182 QLLVLFKGMESIRKFETWAGPLVYIAML---GLAIWALVKAGGS-SILGELP-AGTVSGSNSSWAFLAGIAAWVGFWATL 256 (497)
T ss_pred HHHHHhcCHHHHHHHHHHhchHHHHHHH---HHHHHHHHhcCCc-CccccCC-CCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 3455567799999988777666553322 2223322222211 1111111 001222333444544444443333 34
Q ss_pred chhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhh----hhcccccCCCC--CCccccCCCCchH
Q 036402 216 SMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLG----CMGYAAYGTEA--PGNILTGFYNVLW 279 (440)
Q Consensus 216 ~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g----~~gy~~fg~~~--~~~il~~~~~~~~ 279 (440)
.-|.|.+.|.-|+| |.-.+--.++..+.+.+.-++| ..++..||+.. +.++.+++.+...
T Consensus 257 ~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~ 322 (497)
T COG1953 257 ALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFY 322 (497)
T ss_pred hcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchH
Confidence 55899999999987 4333333445555555555444 45777899884 4477777755433
No 69
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.30 E-value=0.11 Score=50.68 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=44.1
Q ss_pred chhhhhhhhhhchHHHHHH-hh--ChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceee
Q 036402 3 HAFTAIVGSGILALPWSVA-QL--GWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVV 79 (440)
Q Consensus 3 ~l~~~~iG~GiL~lP~~f~-~~--G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l 79 (440)
.++.-.+|+|.|-.|-... +. .|..+++.+++.++..-..+.. + -++.| -+|+++.++. ||+...+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----a---v~~~g---G~~~~l~~~~-g~~f~~l 71 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----A---LALVG---GGYDSLSARI-GKVFGIL 71 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----e---eeecC---CCHHHHHHHh-ChHHHHH
Confidence 4566778999999876665 33 3556677777776665555444 1 11222 1788888864 6766555
Q ss_pred hHHHHH
Q 036402 80 CGIMQY 85 (440)
Q Consensus 80 ~~~~~~ 85 (440)
....++
T Consensus 72 f~~~~~ 77 (378)
T TIGR00796 72 FTVILY 77 (378)
T ss_pred HHHHHH
Confidence 444444
No 70
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.29 E-value=0.26 Score=50.00 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=62.3
Q ss_pred cccHHHHHHHHcCCCc-eeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHh
Q 036402 61 NYTYMDAVRALLGPKN-VVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETIL 139 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~-~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl 139 (440)
..|.+|.-++-+|++. +++..+...+..++...+.+...+..++.+. .++....+++..+++...
T Consensus 106 ~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------------gi~~~~~iii~~~iv~iY 171 (471)
T TIGR02119 106 AITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------------GLSYLTALFIFSSSVLIY 171 (471)
T ss_pred CccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHH
Confidence 3499999999999664 6677777777777777777777777777664 233344455556666667
Q ss_pred hcCCCCchhhHHHHHHHHHHHH
Q 036402 140 SQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 140 ~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
.....++...+...+..+..+.
T Consensus 172 t~~GG~~av~~td~iQ~~v~~~ 193 (471)
T TIGR02119 172 TTFGGFRAVALTDAIQGIVMFT 193 (471)
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 7778888988888888665543
No 71
>PRK09395 actP acetate permease; Provisional
Probab=97.27 E-value=0.3 Score=50.54 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=74.2
Q ss_pred hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCC-CceeehHHHHHHHHHh
Q 036402 12 GILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGP-KNVVVCGIMQYSLLWG 90 (440)
Q Consensus 12 GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~-~~~~l~~~~~~~~~~g 90 (440)
..++.|-...+.|+.. ....+...+.......++.+-.|+. + .+|+.|..++=||+ +.|.+..+...+....
T Consensus 89 tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~----g--~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~ 161 (551)
T PRK09395 89 SFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNL----G--KYTFADVASYRLKQGPIRTLSACGSLVVVAL 161 (551)
T ss_pred HHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhC----C--CccHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 4457777777777642 2111111111111122233322221 2 35999998888884 5777777766666666
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 91 TMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 91 ~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
.....+...+..++.+. .++....+++..++++.-...-.++...+...+..+.++.
T Consensus 162 yl~~q~~g~g~il~~~~--------------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~ 218 (551)
T PRK09395 162 YLIAQMVGAGKLIQLLF--------------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 66666677777666654 2233444455566666666777888888888777655443
No 72
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.21 E-value=1.3 Score=43.04 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=50.5
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhc-
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQ- 141 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~- 141 (440)
+..|..++.+||+..+...+...+.+.....+-....+.-++.+. ..+...+.++..+..+-+.+
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------------g~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------------GIPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCcHHHHHHHHHHHHHHHHH
Confidence 778888888899988888887777777777776666666555443 22334555555544444444
Q ss_pred -CCCCchhhHHHHHH
Q 036402 142 -CPNLEKATFLSIIA 155 (440)
Q Consensus 142 -~~~l~~l~~~s~~~ 155 (440)
.++.+.+..+...-
T Consensus 109 ~~~~y~~~E~~~~~l 123 (358)
T PF01566_consen 109 SSGGYRRLERILKVL 123 (358)
T ss_pred HhccchHHHHHHHHH
Confidence 55666666665443
No 73
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.11 E-value=1.7 Score=43.15 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=28.0
Q ss_pred hhhhhhhhhhchHHHHHHh---hChhHHHHHHHHHHHHHHHHH
Q 036402 4 AFTAIVGSGILALPWSVAQ---LGWILGLMILVAFAAITYYTA 43 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~---~G~~~gii~li~~~~~~~~s~ 43 (440)
++.-..|+|=|-.|-...+ .-|..+.+-+++.++.--.-+
T Consensus 12 LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg 54 (427)
T PF05525_consen 12 LFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG 54 (427)
T ss_pred HHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 5566789999998877664 457778888887776543333
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.99 E-value=2.2 Score=43.62 Aligned_cols=87 Identities=8% Similarity=-0.013 Sum_probs=52.6
Q ss_pred cccHHHHHHHHcCCCceee---hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHH
Q 036402 61 NYTYMDAVRALLGPKNVVV---CGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIET 137 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~~~l---~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 137 (440)
..|..|.-++=||++.+.+ ..+...+.....+...+...+..++.+. .++....+++..++++
T Consensus 107 ~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------------gi~~~~~iii~~~iv~ 172 (502)
T PRK15419 107 ALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------------GMSYETALWAGAAATI 172 (502)
T ss_pred ceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHH
Confidence 3488888888888765443 3333333333444444455555555543 2233444555566676
Q ss_pred HhhcCCCCchhhHHHHHHHHHHHH
Q 036402 138 ILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 138 pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
.-...-.++...+.-.+..+.++.
T Consensus 173 iYt~~GGl~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 173 LYTFIGGFLAVSWTDTVQASLMIF 196 (502)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777788888888888888665543
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=95.95 E-value=0.014 Score=58.72 Aligned_cols=182 Identities=15% Similarity=0.076 Sum_probs=89.4
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCc--ccccccchhh--HhhhHHHHH
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENA--KCHVSGHLYM--LTYGAIETI 138 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~--~~~~~~~~~~--ii~~~~~~p 138 (440)
++..+.|..||.+|..+..+...+...|-...-....++.+..+.+....+.. ..+ ........++ ++..++..+
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ 150 (440)
T PF02133_consen 72 PTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFL-WIGNAIIGIALPLWVCFFIFWLIQTL 150 (440)
T ss_dssp -HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----------HHHHHHHHHHHH
T ss_pred CchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcch-hhhhhhhcchhhHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999998865311000 000 0001111111 222223333
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhh-hHHHHHHHHHHHh-ccc
Q 036402 139 LSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIW-HAFQALGNIAFAY-TYS 216 (440)
Q Consensus 139 l~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~faf-~~~ 216 (440)
... ..++.++.+.......... ..+........+.+. .+....+ ...... .+..++...+-.+ ..-
T Consensus 151 ~~~-~g~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~ 218 (440)
T PF02133_consen 151 FAI-YGMKALRRLAVIAAPILLV---VFIGMLIWALSKAGG--GPLLSAP------ASPSPSGSFLAAIALVIGSWISWA 218 (440)
T ss_dssp HHC-THHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHCT---HHHCCS--------S----S-HHHHHHHHHCCCHHHH
T ss_pred HHh-cCHHHHHhHHhhhhHHHHh---hhhheeEEEeecCCc--chhhhCc------ccchhHHHHHHHHHHHHhhhhhhh
Confidence 333 3456666665555443321 111222222222211 1111100 011111 2333333332222 223
Q ss_pred hhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccc
Q 036402 217 MMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAA 261 (440)
Q Consensus 217 ~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 261 (440)
.+.+.+.|.+|++ ++-.+....+..........+|+++...
T Consensus 219 ~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 219 PNASDYSRYAKSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp CCCHHHHTTC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHhhCCCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 4556889999976 6666667777766666666666655443
No 76
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.86 E-value=2.1 Score=42.30 Aligned_cols=75 Identities=13% Similarity=-0.049 Sum_probs=51.4
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcC
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQC 142 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 142 (440)
+..|..++.++|+..++..+...+....++++-.+..+--++.+. ..+..+-.++.++..+.+...
T Consensus 78 ~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~--------------~ip~~~g~iItav~~~iil~~ 143 (416)
T COG1914 78 GLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF--------------GIPLIIGAVITAVDVLIILLL 143 (416)
T ss_pred cHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHh
Confidence 788888889999999998888888888888888888877776654 223344445555554444444
Q ss_pred CCCchhhHH
Q 036402 143 PNLEKATFL 151 (440)
Q Consensus 143 ~~l~~l~~~ 151 (440)
|+.+.+..+
T Consensus 144 ~~~r~~E~~ 152 (416)
T COG1914 144 KGYRLLERV 152 (416)
T ss_pred cchHHHHHH
Confidence 434444444
No 77
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=95.78 E-value=0.1 Score=49.78 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=76.5
Q ss_pred hhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHH
Q 036402 5 FTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQ 84 (440)
Q Consensus 5 ~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~ 84 (440)
+.++-|+|-+-=|..-.+-||.++.+++++-+++.---.+...-.... |++-+ +.+|++++..||++|.+..+..
T Consensus 62 f~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv---R~~G~--Si~~i~~~~lG~~~~~lf~~f~ 136 (376)
T PF02554_consen 62 FASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV---RHKGK--SIGEIAGKYLGKRAKKLFLIFI 136 (376)
T ss_pred HHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh---cCCCc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999998999999999999999998877776666666553221 11122 9999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 036402 85 YSLLWGTMIGYTITTAISVAN 105 (440)
Q Consensus 85 ~~~~~g~~i~y~i~~~~~l~~ 105 (440)
++.+.....++....++.+..
T Consensus 137 ~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 137 FFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 998888888888777776644
No 78
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=95.65 E-value=3.3 Score=42.98 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=55.8
Q ss_pred ccHHHHHHHHcCCC-ceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhh
Q 036402 62 YTYMDAVRALLGPK-NVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILS 140 (440)
Q Consensus 62 ~~y~~l~~~~~G~~-~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~ 140 (440)
.|-.|.-++=||++ .+.+..+...+.........+...+..++.+. ..+....+++..++++.-.
T Consensus 95 ~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------------gi~~~~~iii~~~i~~iYt 160 (552)
T TIGR03648 95 YTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------------EVDFETGVFIGMAIVFFYA 160 (552)
T ss_pred ccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHHH
Confidence 48888888788855 56666666666666666666666777776654 2233344455555666666
Q ss_pred cCCCCchhhHHHHHHHHHHH
Q 036402 141 QCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 141 ~~~~l~~l~~~s~~~~~~~~ 160 (440)
..-.++...+.-.+..+.++
T Consensus 161 ~~GG~~aV~~TD~iQ~iim~ 180 (552)
T TIGR03648 161 VLGGMKGVTWTQVAQYIVLI 180 (552)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 77778888888777755444
No 79
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=95.62 E-value=3.1 Score=42.43 Aligned_cols=87 Identities=7% Similarity=-0.006 Sum_probs=50.3
Q ss_pred cccHHHHHHHHcCCCceee---hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHH
Q 036402 61 NYTYMDAVRALLGPKNVVV---CGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIET 137 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~~~l---~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 137 (440)
..|..|.-++=+|++.+.+ ..+...+.........+...+..++.+. ..+....+++..+++.
T Consensus 103 ~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------------gi~~~~~iii~~~i~~ 168 (487)
T TIGR02121 103 SITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------------GLDYKTGLLIGALIIV 168 (487)
T ss_pred CccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CccHHHHHHHHHHHHH
Confidence 4588999998899765544 2333333333334444455555555543 2222334445555565
Q ss_pred HhhcCCCCchhhHHHHHHHHHHHH
Q 036402 138 ILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 138 pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
.-...-.++...+...+..+.++.
T Consensus 169 ~Yt~~GGl~av~~TD~iQ~~i~~~ 192 (487)
T TIGR02121 169 IYTFFGGFLAVSWTDFVQGLLMFF 192 (487)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 666677788888888777665543
No 80
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.61 E-value=0.35 Score=49.55 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 036402 201 HAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMG 258 (440)
Q Consensus 201 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g 258 (440)
++...|+++.-+-.+...=-.+-.|+|+|+ |.++|-...++...+++|.++..+-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPS---KSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCcc---ccCCccchHHHHHHHHHHHHHHHHh
Confidence 455666666666666655566778999996 7899999999999999999877654
No 81
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=95.35 E-value=4.3 Score=42.44 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=82.8
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHH
Q 036402 16 LPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRT-PDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIG 94 (440)
Q Consensus 16 lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~-~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~ 94 (440)
|-|....+|...+.++.++|++.++.++.-+.-.+.. .-|.+| +|--+.+ .+|+--+-.+.++.++..-.....
T Consensus 137 LtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG----sYfmISR-sLGPEFGgAVGlcFYLgtT~AaaM 211 (1075)
T KOG2082|consen 137 LTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG----SYFMISR-SLGPEFGGAVGLCFYLGTTVAAAM 211 (1075)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC----eeEEEec-ccCccccceeeehhhhhhHHHHHH
Confidence 6788888999999999999999888888877764432 122223 5554444 567777777777887777777778
Q ss_pred HHHHHHHHHHH-HHHhhc-ccCCCCC---cccccccchhhHhhhHHHHHhhcC--CCCchhhHHHHHHHHHHH
Q 036402 95 YTITTAISVAN-LKRSTC-YHKKGEN---AKCHVSGHLYMLTYGAIETILSQC--PNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 95 y~i~~~~~l~~-i~~~~~-~~~~~~~---~~~~~~~~~~~ii~~~~~~pl~~~--~~l~~l~~~s~~~~~~~~ 160 (440)
|++..-+.+-. +++... ++.++.. ..-..+-|.+-.++.+++....+. |-.+.++.++..+++.++
T Consensus 212 YIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSI 284 (1075)
T KOG2082|consen 212 YILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSI 284 (1075)
T ss_pred HHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88877776554 444322 2221111 111234455555554444444333 334445555555544444
No 82
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.61 E-value=0.56 Score=45.84 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=62.3
Q ss_pred ccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhc
Q 036402 62 YTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQ 141 (440)
Q Consensus 62 ~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~ 141 (440)
.-..+++++.+|+.|+.+..+...+.|+.++++.....+|+..++.+ ..+++.|.++..+....++.
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999887642 25567777777666666655
Q ss_pred CCCCchhhHHHHHH
Q 036402 142 CPNLEKATFLSIIA 155 (440)
Q Consensus 142 ~~~l~~l~~~s~~~ 155 (440)
. .++++-..+.--
T Consensus 322 ~-Gl~~Ii~~~~Pv 334 (378)
T TIGR00796 322 L-GLTQIISISIPV 334 (378)
T ss_pred h-CHHHHHHHHHHH
Confidence 4 566665555444
No 83
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.19 E-value=0.53 Score=46.58 Aligned_cols=119 Identities=16% Similarity=0.259 Sum_probs=82.4
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHH
Q 036402 18 WSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTI 97 (440)
Q Consensus 18 ~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i 97 (440)
....++|.+.++.+.++.+.+.+.+...-... +...++..-..+++++.+|+.|..+..+...+.|+-++++...
T Consensus 222 ~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~-----~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~ 296 (427)
T PF05525_consen 222 KYTIKAGLIAGILLALIYGGLAYLGATSSGSF-----PDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLIS 296 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccc-----cCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677766666555555444433222111 1111222367788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHH
Q 036402 98 TTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIA 155 (440)
Q Consensus 98 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~ 155 (440)
..+|+.++..+ ..+++.|.++.+++...++.. .++++-..+.=-
T Consensus 297 a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~Pi 340 (427)
T PF05525_consen 297 ACAEYFSELFP-------------KISYKVWVIIFTIFSFIIANL-GLDQIIKISVPI 340 (427)
T ss_pred HHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 99999999763 456788888888888888776 355555555443
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=93.87 E-value=0.46 Score=48.75 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=72.6
Q ss_pred hhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHH
Q 036402 5 FTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQ 84 (440)
Q Consensus 5 ~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~ 84 (440)
+.++-|+|-+-=|..-.|.||.++.+++++=.++.---.++..--... |++-| |..|++++..||+++.+..+..
T Consensus 93 FasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~---R~~Gr--Sig~ia~~~iG~~~~~lfli~i 167 (701)
T PRK15015 93 FAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST---RRDGR--SLGELVKEEMGPTAGVIALVAC 167 (701)
T ss_pred HHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee---cCCCc--cHHHHHHHHhhHHHHHHHHHHH
Confidence 567889999999999999999999999988777766666555542211 11122 9999999999999999888888
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 036402 85 YSLLWGTMIGYTITTAISVA 104 (440)
Q Consensus 85 ~~~~~g~~i~y~i~~~~~l~ 104 (440)
++........+..++.+.+.
T Consensus 168 ~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 168 FMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777777666666666553
No 85
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=93.85 E-value=1.2 Score=44.02 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=46.3
Q ss_pred hhhhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccH-----HHHHHHHcCCCce
Q 036402 4 AFTAIVGSG-ILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTY-----MDAVRALLGPKNV 77 (440)
Q Consensus 4 l~~~~iG~G-iL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y-----~~l~~~~~G~~~~ 77 (440)
.+.+.+|+| ++.+|-+....| ..++.++-+.+++..-+.+.-.....+..+++++ .+| ..+-+...||+..
T Consensus 56 ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~--g~~~GGP~yyi~~gl~~k~lg 132 (425)
T TIGR00835 56 SLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDAD--GVFRGGPMYYIKKGLGMRWLA 132 (425)
T ss_pred HHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCC--CCEecChHHHHHHHhCccHHH
Confidence 467899998 999999976665 6577777777776665554443322211111111 135 6677777777644
Q ss_pred eehHHH
Q 036402 78 VVCGIM 83 (440)
Q Consensus 78 ~l~~~~ 83 (440)
.+..++
T Consensus 133 ~lfa~~ 138 (425)
T TIGR00835 133 VLFAVF 138 (425)
T ss_pred HHHHHH
Confidence 444444
No 86
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.53 E-value=1.3 Score=43.00 Aligned_cols=119 Identities=13% Similarity=0.232 Sum_probs=84.1
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHH
Q 036402 18 WSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTI 97 (440)
Q Consensus 18 ~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i 97 (440)
......|++.++.+-++...+.+.+ -.+++..+..++...=..+..++.||+.|+++..++..+.|.-++++...
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~ 298 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIV 298 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578887777766666666655 11111111111122256777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHH
Q 036402 98 TTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIA 155 (440)
Q Consensus 98 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~ 155 (440)
.++|+..++.+ ..+++.|.+++.+..+.++.. .++++-..|.=-
T Consensus 299 a~aefF~~~~p-------------~~SY~~~v~if~i~sflvan~-GL~~Ii~isvPv 342 (431)
T COG1114 299 ACAEFFSKLVP-------------KLSYKTWVIIFTLISFLVANL-GLEQIIKISVPV 342 (431)
T ss_pred HHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 99999998864 466788888888887777766 466666666544
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=92.63 E-value=0.35 Score=48.85 Aligned_cols=217 Identities=21% Similarity=0.178 Sum_probs=118.7
Q ss_pred chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHH
Q 036402 14 LALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMI 93 (440)
Q Consensus 14 L~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i 93 (440)
|=+++...|+|...|++++..+..++..|..--......-..+.|- .|.=+ .+-+|+.-+..+.+...+.+.-.+.
T Consensus 51 lrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yfli-s~slg~efggsigiIy~f~~aVa~a 126 (643)
T KOG2083|consen 51 LRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLI-SRSLGPEFGGSIGIIYAFANAVATA 126 (643)
T ss_pred hhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEE-EecccccccchhHHHHHHHHHHHHH
Confidence 3478999999999999888877766666555444322211222222 33322 3356777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036402 94 GYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAK 173 (440)
Q Consensus 94 ~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~ 173 (440)
.|.+..+|.+..++... + .+..+. .-.+..++.+-++ +-..+|.+.+..+..++ +.+.+.-.+..
T Consensus 127 m~~vgfaEsv~~l~~~~--s------~~~i~g--i~~vt~~ill~i~----~ag~~w~~k~q~~ll~i-l~iai~~f~~g 191 (643)
T KOG2083|consen 127 MYVVGFAESVAHLFETE--S------KEMIDG--IGSVTVLILLAIN----VAGVEWEAKLQIVLLLI-LLIAIADFLVG 191 (643)
T ss_pred HhhhhHHHHHHHHHHhc--c------HHHhcc--hhHHHHHHHHHhh----hccchhHHHHHHHHHHH-HHHHHHHhhhh
Confidence 99999999999988641 1 111111 1111122222232 33356666666443221 11222211111
Q ss_pred h-hhcccc-----cccccce--eccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHHHH
Q 036402 174 I-FSHRKI-----KGNLMVM--KAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIG 245 (440)
Q Consensus 174 ~-~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~ 245 (440)
. +..+.. ..+...+ +..||.. ....++.-|+++.=+..+.-.=..+..++|+|. +..++-...+..
T Consensus 192 s~~~~~~~~~g~~~~~a~~~~~n~~~~~~---~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq---~~IP~GaL~Ai~ 265 (643)
T KOG2083|consen 192 SFFSPNEFSSGFFGYRADIFVENLNPDID---PGYTFFSVFAVFFPAATGILAGANISGDLKDPQ---KAIPLGALLAIG 265 (643)
T ss_pred hccChhhhcccccccchhhcccCCCCCcC---CCCceEeeeeeecchhhhhhccccccCCCCCch---hhcccchhhhhh
Confidence 1 111100 0010000 0011111 112455666666666655555566778999986 778899999999
Q ss_pred HHHHHHHHhh
Q 036402 246 ATALFYISLG 255 (440)
Q Consensus 246 ~~~~~Y~~~g 255 (440)
..+.+|..+-
T Consensus 266 vst~~yl~~i 275 (643)
T KOG2083|consen 266 VSTLLYLIFI 275 (643)
T ss_pred hhhhhhhhhh
Confidence 9999996443
No 88
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=91.62 E-value=2.4 Score=42.08 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=80.0
Q ss_pred HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHH
Q 036402 19 SVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTIT 98 (440)
Q Consensus 19 ~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~ 98 (440)
...++|.+.++.+.++.+.+.+.+... .... +...++..=.....++.+|+.++.+..+...+.|+-++++-...
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~s----~~~~-~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a 301 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSDS----ASLV-DQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCA 301 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----cccc-cCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777776666666666555411 1101 11001222455667889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHH
Q 036402 99 TAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIA 155 (440)
Q Consensus 99 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~ 155 (440)
.+|...+.. ..+++.+.++.+++.++++... ++++-..+.=-
T Consensus 302 ~a~~f~~~~--------------~isY~~~v~i~~l~S~~lSn~G-~~~II~~s~Pi 343 (439)
T PRK15433 302 CAEFFAQYV--------------PLSYRTLVFILGGFSMVVSNLG-LSQLIQISVPV 343 (439)
T ss_pred HHHHHHhhc--------------CCcHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 999988754 2556788888888888888763 55555555443
No 89
>PRK00701 manganese transport protein MntH; Reviewed
Probab=91.41 E-value=17 Score=36.48 Aligned_cols=43 Identities=19% Similarity=0.030 Sum_probs=30.8
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHH
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVAN 105 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~ 105 (440)
+..|+.++-+||+..++..+...+.+.+....-.+-.+.-++.
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~l 137 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKL 137 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998887776666666666666655555544443
No 90
>PRK10484 putative transporter; Provisional
Probab=91.23 E-value=20 Score=36.94 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=46.4
Q ss_pred cccHHHHHHHHcCCCceeehHHHHHHHHHhhHH-HHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHh----hhHH
Q 036402 61 NYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMI-GYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLT----YGAI 135 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i-~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii----~~~~ 135 (440)
..|..|.-++-+|++.+.+......+....... ..+...+..++.++.- +. ....+....+.+ ..++
T Consensus 100 ~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~---~~-----~~gi~~~~~~~~~~~~~~~i 171 (523)
T PRK10484 100 ITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV---SE-----LLGISYGAAIWLLVWLIGII 171 (523)
T ss_pred CccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hh-----hcCCcHHHHHHHHHHHHHHH
Confidence 458999999999998777655544433332222 2222233333333210 00 001111221111 2233
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHHH
Q 036402 136 ETILSQCPNLEKATFLSIIAAVTSLV 161 (440)
Q Consensus 136 ~~pl~~~~~l~~l~~~s~~~~~~~~~ 161 (440)
...-...-.++...+.-.+..+.++.
T Consensus 172 ~~~Yt~~GGl~aV~~TD~iQ~vim~i 197 (523)
T PRK10484 172 GAIYAVFGGLKAVAVSDTINGIGLLI 197 (523)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34555667788888888887665543
No 91
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=89.87 E-value=10 Score=38.44 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=73.5
Q ss_pred hhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHH
Q 036402 5 FTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQ 84 (440)
Q Consensus 5 ~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~ 84 (440)
+.++-|+|-+-=|.--+|.||.+|.+++++=+++.---.+.+.--... |.+-+ |.+|++++.+|++.+.+..+..
T Consensus 62 FaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv---R~~G~--Si~~ia~~~lG~~a~~~~~~~~ 136 (575)
T COG1966 62 FASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV---RHGGK--SIGEIAGKYLGRTAKVFFLLLA 136 (575)
T ss_pred HHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee---ccCCc--cHHHHHHHHhhhhHHHHHHHHH
Confidence 457889999999999999999999999998888777666666652211 11222 9999999999999999888888
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 036402 85 YSLLWGTMIGYTITTAISVAN 105 (440)
Q Consensus 85 ~~~~~g~~i~y~i~~~~~l~~ 105 (440)
.+........+.....+.+.+
T Consensus 137 l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 137 LILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 777777766666666555543
No 92
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=89.52 E-value=23 Score=35.07 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=49.8
Q ss_pred hhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 5 FTAIVGSGIL-ALPWSVAQLGWILGLMILVAFAAITYYTAILLSD-CYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 5 ~~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~-~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
..+++|.|-. -.||...+-|-..-++.. ++..+..=--.++.| +.-+... ++...+|+.+.. +|+++ ....
T Consensus 19 ~GsAVGLGNiWrFPy~~~~nGGgAFll~y-li~~l~~GiPlli~Ef~iGr~~~--~~~~~a~~~l~~---~~~~~-~~G~ 91 (439)
T COG0733 19 AGSAVGLGNIWRFPYMAGENGGGAFLLPY-LIFLLLVGIPLLLAEFAIGRRGR--KNAVGAFRKLAP---KKKWE-WIGW 91 (439)
T ss_pred HHHHhcccccccCCeEeeecCcchHHHHH-HHHHHHHhHHHHHHHHHhhhhcC--CChhHHHHHhcc---Cccch-hhhh
Confidence 3456666644 578888877765333332 223333222333444 1111111 111236666654 34433 3444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRS 109 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~ 109 (440)
......+..+.-|.++.|=.+..+...
T Consensus 92 ~gv~~~~~i~sfYsvI~GWil~Y~~~s 118 (439)
T COG0733 92 FGVLGGFLILSFYSVIGGWILSYLVKS 118 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777888777777666644
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.83 E-value=36 Score=34.01 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=33.3
Q ss_pred hhhhhhhhhhchHHHHHHh---hChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCCCCCcccHHHHHHHH
Q 036402 4 AFTAIVGSGILALPWSVAQ---LGWILGLMILVAFAAIT-YYTAILLSDCYRTPDPINGSRNYTYMDAVRAL 71 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~---~G~~~gii~li~~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 71 (440)
++.--.|+|=|-.|-...+ .-|..+.+.+++.++.- ..+...+.+.. -+++|++++.
T Consensus 17 LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~-----------g~~~~l~~rv 77 (439)
T PRK15433 17 TFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVG-----------GGVDSLSTPI 77 (439)
T ss_pred HHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCHHHHhhhc
Confidence 4555679999988776653 33666777766666532 23333333321 1677777754
No 94
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=84.70 E-value=43 Score=32.97 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=32.7
Q ss_pred hhhhhhhhhhchHHHHHHh---hChhHHHHHHHHHHHHHHH-HHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCce
Q 036402 4 AFTAIVGSGILALPWSVAQ---LGWILGLMILVAFAAITYY-TAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNV 77 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~---~G~~~gii~li~~~~~~~~-s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 77 (440)
++.--.|+|=+-.|-...+ -.+..+..-+++.++.-=. +...+... |+ +++++.++. ||+..
T Consensus 14 LFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~--------g~---~~~~l~~~i-~~~fg 79 (431)
T COG1114 14 LFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALY--------GG---GVESLATRI-GPWFG 79 (431)
T ss_pred HHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhcc--------CC---CHHHHhhhc-cchHH
Confidence 4445678888887766543 2344555556555553222 22222221 11 688888765 55543
No 95
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=83.87 E-value=44 Score=34.55 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=85.0
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcC
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQC 142 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 142 (440)
+..|--++-||++.+.+..+...+..+--...++..-+-.+++... ++.....++..++..--...
T Consensus 109 ~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------------~~~~l~~~~~~~ic~~YT~~ 174 (585)
T KOG2349|consen 109 TMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------------INLYLIVVILGLICVFYTAL 174 (585)
T ss_pred ehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------------cCceeehHHHHHHHHHHHHh
Confidence 5555666677888666665555555444433333333333333221 11111112222222222334
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHH------hhhcccccccccce-eccccccchhhhhhHHHHHHHHHHHh-c
Q 036402 143 PNLEKATFLSIIAAVTSLVYSSIALCLSIAK------IFSHRKIKGNLMVM-KAGVDVASSKKIWHAFQALGNIAFAY-T 214 (440)
Q Consensus 143 ~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf-~ 214 (440)
..++..-|.=.+....++.-...+.+....+ ..+....+.+.... .+.+|+...+..|..+..-.....++ +
T Consensus 175 GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~ 254 (585)
T KOG2349|consen 175 GGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYG 254 (585)
T ss_pred cCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHh
Confidence 4555555555555554443222222111111 11111111222222 24445666777787655444444444 5
Q ss_pred cchhHHHHHhhhCCCCccchhhhhHHHHHHHHH---HHHHHHhhhhcccccCC
Q 036402 215 YSMMLLEIQDTLKSPPPENKMMKKVSLYAIGAT---ALFYISLGCMGYAAYGT 264 (440)
Q Consensus 215 ~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~---~~~Y~~~g~~gy~~fg~ 264 (440)
.+.+. ++|.+.-|+ .|+.++......... ..++...|++.|..|.|
T Consensus 255 vnQ~~--VQR~lsl~s--lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 255 VNQLI--VQRYLSLPS--LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred hhHHH--HhHHhcccc--HHHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 55555 455555442 277778776654444 34455667777777743
No 96
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=78.39 E-value=62 Score=32.55 Aligned_cols=203 Identities=15% Similarity=0.036 Sum_probs=98.1
Q ss_pred cccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccc---CCCCCcccccccchh--hHhhhHH
Q 036402 61 NYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYH---KKGENAKCHVSGHLY--MLTYGAI 135 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~---~~~~~~~~~~~~~~~--~ii~~~~ 135 (440)
+.+|+-..|.-||-++..+.-+.-.+....-.-...-+.|+.++.++++...+ ..+.-+........+ .+++-++
T Consensus 117 hIsFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~ 196 (572)
T KOG2466|consen 117 HISFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVA 196 (572)
T ss_pred ccceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHH
Confidence 35777777777887776544333332222222222445667777666654322 111111112222222 2455556
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHh-c
Q 036402 136 ETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAY-T 214 (440)
Q Consensus 136 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~ 214 (440)
.+|..+.| .+++|.+-......+....+-.+ ++...+..+ -+++.+-+ .+.+.....|.++.++...+=.| .
T Consensus 197 s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~L---Iw~l~kAhG-~G~l~~~~--st~~gs~~aWa~~~~i~~~~~~fst 269 (572)
T KOG2466|consen 197 SLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFL---IWLLKKAHG-LGHLFDSK--STVSGSAHAWAFVRSIMSCIANFST 269 (572)
T ss_pred hhheeecc-HHHhhhHHHHHHhhhHHHHHHHH---HHHHHhcCC-ccccccCC--CcccccchhHHHHHHHHHHHhccch
Confidence 66766664 67777766555444432222222 222222111 11111100 01334455676666665555555 4
Q ss_pred cchhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhh----hcccccCCCCC--CccccCC
Q 036402 215 YSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGC----MGYAAYGTEAP--GNILTGF 274 (440)
Q Consensus 215 ~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~----~gy~~fg~~~~--~~il~~~ 274 (440)
...|.|..-|--|+| .+....-..++.+.+.+-.++|+ .++..||.+-- -++++++
T Consensus 270 l~~N~pDFsRF~ksp----~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 270 LIVNAPDFSRFAKSP----NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred hhccCchhHhhcCCC----CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 456888888888887 33333333344444444444444 57777887742 2444443
No 97
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=73.85 E-value=11 Score=37.54 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhhhcchhhhhhhhHHHHHHhc
Q 036402 343 RLLLRTAFVIFTTGVAMMFPF-FNAILGLLGSISFWPLTVHLPLRMYIEQAK 393 (440)
Q Consensus 343 ~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~~ 393 (440)
|..........+.+.++..|. +....+.+|++.....+-+.|.+++++-++
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455566666666664 778888899899889999999999998754
No 98
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=69.53 E-value=1.4e+02 Score=30.71 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=48.2
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhc-
Q 036402 136 ETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYT- 214 (440)
Q Consensus 136 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~- 214 (440)
+.-++..|.+++..++.......-+..+++ +.+ +....++.....+.. +.||.+.-.+..-...|++-..|+.+
T Consensus 190 iv~~~i~kGi~~~~kv~~~~~~~p~v~l~i---l~i-r~ltl~ga~~Gl~~~-~~pd~~~l~~~~vW~~A~~Q~ffsl~i 264 (523)
T PF00209_consen 190 IVFFGIWKGIESIGKVMYPTLLLPFVLLII---LLI-RSLTLPGASEGLKFL-FTPDWSKLLDPKVWIAALGQVFFSLSI 264 (523)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHH---HHHHH---HHH-HHHT-EEHHHHHHHH-HSB-TTGTTSHHHHHHHHHHHHHHTTT
T ss_pred HHHHheEeccccccchhhhhhhhhhEEEEE---EEE-EEEcCCCCCCceEEE-ecCCcchhhHHHHHHHHHHHHhhccCC
Confidence 344556677887777766554322221112 212 222222111111111 11233222222234678888888884
Q ss_pred cchhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHH
Q 036402 215 YSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYI 252 (440)
Q Consensus 215 ~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~ 252 (440)
+.+.+..+-..+|+. ++..|...........+.+
T Consensus 265 g~G~~it~~Sy~~~~----~n~~~~a~~v~~~~~~~sl 298 (523)
T PF00209_consen 265 GFGIMITYGSYNKFK----NNIFRDALIVAFINTLVSL 298 (523)
T ss_dssp TSSHHHHHHTTS-TT----S-SHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEcCcCCCC----ccccccceEEEcCchhhhH
Confidence 455666666556654 6666655444444444443
No 99
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=60.47 E-value=1.8e+02 Score=28.71 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=26.1
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHH
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVA 104 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~ 104 (440)
+..|+.++.++|+.++...+.......++...-..-.+.-++
T Consensus 65 ~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ 106 (390)
T TIGR01197 65 DLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALN 106 (390)
T ss_pred CHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999877665555444444444444443443333
No 100
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=59.21 E-value=1.9e+02 Score=29.63 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=39.3
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKR 108 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~ 108 (440)
...++-....||++...+..+..+..+..+++-++..+..+..+-.
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 5777778899999999999999999999999988888888877653
No 101
>PRK12768 CysZ-like protein; Reviewed
Probab=54.24 E-value=1.1e+02 Score=27.92 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=19.8
Q ss_pred HhhhCCCCccchhhhhHHHHHHHHHHHHHHHhh
Q 036402 223 QDTLKSPPPENKMMKKVSLYAIGATALFYISLG 255 (440)
Q Consensus 223 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g 255 (440)
.+++.|| ++++++..+...+..++....
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4566664 688888888888777776653
No 102
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=51.68 E-value=1.3e+02 Score=27.68 Aligned_cols=69 Identities=6% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCC-chHHHHHHHHHHHHHHHHhh
Q 036402 222 IQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYN-VLWLVDIANIAVIIHLIGAY 296 (440)
Q Consensus 222 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~s~ 296 (440)
-.+.+++| ++++.+.....+..++|...-..+...+++.. +.++...|+ -+|...+......+..+.-+
T Consensus 17 g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p~wl~wl~~ll~~l~~l~~l~l~ 86 (251)
T PRK04949 17 GWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLPDWLSWLSYLLWPLAVLSVLLVF 86 (251)
T ss_pred HHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566654 68888888888888877766444444444322 333333332 23444444444444433333
No 103
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=49.57 E-value=38 Score=29.62 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=41.0
Q ss_pred hHHHHHHHhhhhcchhhhhhhhHHHHHHhcccc---------chH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 036402 364 FNAILGLLGSISFWPLTVHLPLRMYIEQAKIKR---------GSL-KWFMLQILGLICLVVTLVSAIGSIADISD 428 (440)
Q Consensus 364 ~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~---------~~~-~~~~~~~~~~~~~~~~v~g~~~si~~ii~ 428 (440)
++.-.-+.|++.++-+..++|+...+..++++. .++ +-....+...+|++.++.+.+.|..++.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556778888899999999999999876632 122 22223344455555556666666666554
No 104
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=45.10 E-value=3.4e+02 Score=27.32 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhccc---hHHHHHHHhhhhcchhhhhhhhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 036402 348 TAFVIFTTGVAMMFPF---FNAILGLLGSISFWPLTVHLPLRMYIEQAKI-KRGSLKWFMLQILGLICLVVTLVSAIGSI 423 (440)
Q Consensus 348 ~~~~~~~~~ia~~vp~---~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~v~g~~~si 423 (440)
.+++....+.....|+ ...+++++|.-..+.+.=.+=++..+..+|+ ++++...+....+--.+.++.+.|..++.
T Consensus 236 iiLI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGGaf 315 (441)
T PF02447_consen 236 IILILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGGAF 315 (441)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 3344445555555554 5668888887655444444433333332222 22222233345555666777777777777
Q ss_pred HHHHHhh
Q 036402 424 ADISDLL 430 (440)
Q Consensus 424 ~~ii~~~ 430 (440)
.+++++-
T Consensus 316 g~vl~~s 322 (441)
T PF02447_consen 316 GQVLKDS 322 (441)
T ss_pred HHHHHhC
Confidence 7777653
No 105
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=44.82 E-value=90 Score=25.90 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=48.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccch
Q 036402 234 KMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPI 303 (440)
Q Consensus 234 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 303 (440)
||.+|.+.+..-...++..++|+.....+-++. +..+-.+--+|.-.+.-+++.++.+..+....+|.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777888999998999999999986655555443 23222222367778888888888888877667765
No 106
>PLN02680 carbon-monoxide oxygenase
Probab=43.31 E-value=1.1e+02 Score=27.76 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccch
Q 036402 234 KMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPI 303 (440)
Q Consensus 234 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 303 (440)
|+.+|.+.+..-...++..++|+.....+-|+ .+..+-++--+|.-...-+++.++.+..+..+.+|.
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 77889999999999888889998765555443 333222223468788888888888888887777764
No 107
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=42.33 E-value=36 Score=21.92 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccCCCCC
Q 036402 238 KVSLYAIGATALFYISLGCMGYAAYGTEAP 267 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~ 267 (440)
.+...++.+..++..+.|..-|.+||+..+
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 355667777888888888888999997644
No 108
>TIGR00909 2A0306 amino acid transporter.
Probab=41.59 E-value=3e+02 Score=27.24 Aligned_cols=47 Identities=9% Similarity=-0.128 Sum_probs=39.9
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRS 109 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 109 (440)
...++.++..|+++..++.+...+..+++..+.+...+..+....+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677778888888889999999999999999999999988887643
No 109
>PRK09928 choline transport protein BetT; Provisional
Probab=39.62 E-value=4.8e+02 Score=27.83 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=51.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhcccCCC-CCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 036402 88 LWGTMIGYTITTAISVANLKRSTCYHKKG-ENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIA 166 (440)
Q Consensus 88 ~~g~~i~y~i~~~~~l~~i~~~~~~~~~~-~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 166 (440)
....+..+.+..+|.-...+...+-+..+ ...+..+.+-.|.++.+++.+-|.....++.++.++.++.+=. ..+.+.
T Consensus 415 ~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf-~~I~ll 493 (679)
T PRK09928 415 ATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPF-SFVIFF 493 (679)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHH
Confidence 33455668888888888887765544331 1223355666777777666666666677888888887765432 222333
Q ss_pred HHHHHHHhh
Q 036402 167 LCLSIAKIF 175 (440)
Q Consensus 167 v~~~i~~~~ 175 (440)
+..++.+..
T Consensus 494 ~~~sl~k~l 502 (679)
T PRK09928 494 VMAGLYKSL 502 (679)
T ss_pred HHHHHHHHH
Confidence 344445443
No 110
>CHL00020 psbN photosystem II protein N
Probab=38.50 E-value=34 Score=21.67 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCC
Q 036402 239 VSLYAIGATALFYISLGCMGYAAYGTEAP 267 (440)
Q Consensus 239 ~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~ 267 (440)
+...++.+..++..+.|..-|.+||+..+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 44566777777788888888889997643
No 111
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=38.28 E-value=3.7e+02 Score=26.77 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=84.7
Q ss_pred hhhhhchHHHHHHh------hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHH
Q 036402 9 VGSGILALPWSVAQ------LGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGI 82 (440)
Q Consensus 9 iG~GiL~lP~~f~~------~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~ 82 (440)
.|.|.-++..+-++ =|++..+-.++=.-++|..|...++-..........+...-.++.-+..+|.++.+++.+
T Consensus 234 AG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i 313 (416)
T PF01235_consen 234 AGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAI 313 (416)
T ss_pred CCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHH
Confidence 45555555555442 355544444444555666777766664331111111111112333344578889999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 036402 83 MQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 83 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
++.+..+.+.+++....-+.+..+.+. ......+-+++ +++.++....+++.+..++=+++.++...
T Consensus 314 ~l~lFafTTilg~~~yge~~~~yl~~~------------~~~~~~~ri~~-i~~~~~G~~~~~~~vW~~~Di~~~lmai~ 380 (416)
T PF01235_consen 314 ALFLFAFTTILGWYYYGEKCAEYLFGG------------KKAIWIYRILF-IAMVFIGAVIDLDLVWDLADIANGLMAIP 380 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC------------ceEEEeeeehh-hhhhhhhhcccchhHHHHHHHHHHHHHHH
Confidence 999999999999999888888877521 00111222222 23344444567787877877777776666
Q ss_pred HHHHHHH
Q 036402 163 SSIALCL 169 (440)
Q Consensus 163 ~~i~v~~ 169 (440)
.++.+.+
T Consensus 381 Nlial~l 387 (416)
T PF01235_consen 381 NLIALLL 387 (416)
T ss_pred HHHHHHH
Confidence 6555544
No 112
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=38.08 E-value=3e+02 Score=24.63 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=50.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchHHHHHHHHHHHHHHHHhhhhcccch
Q 036402 234 KMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPI 303 (440)
Q Consensus 234 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 303 (440)
|+..|.+.+..-...++..++|+.....+-|+.++++.+-++.-+|.-...-+++.++.+..+..+.+|.
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566888888888888888888777666655554444332323467778888888889888887766664
No 113
>PLN02810 carbon-monoxide oxygenase
Probab=36.63 E-value=3.2e+02 Score=24.65 Aligned_cols=75 Identities=24% Similarity=0.142 Sum_probs=54.4
Q ss_pred HhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCC-CchHHHHHHHHHHHHHHHHhhhhccc
Q 036402 223 QDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFY-NVLWLVDIANIAVIIHLIGAYQVFAQ 301 (440)
Q Consensus 223 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~~ 301 (440)
++..+.+ |+.+|.+.+..=...++..++|+.....|-++. .+ .|+. --+|.-.....++.++-+..+-.+.+
T Consensus 69 Yr~~~~~----k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i-~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~ 141 (231)
T PLN02810 69 YKSLPLK----KEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GI-ANLYSLHSWLGIGIISLYGIQWIYGFIVFFF 141 (231)
T ss_pred hhccccc----cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC-CceeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445544 778899999999999999999998877776554 23 3332 24687788888888888888877777
Q ss_pred chH
Q 036402 302 PIF 304 (440)
Q Consensus 302 p~~ 304 (440)
|..
T Consensus 142 P~~ 144 (231)
T PLN02810 142 PGG 144 (231)
T ss_pred CCC
Confidence 653
No 114
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=34.47 E-value=5.2e+02 Score=26.40 Aligned_cols=136 Identities=10% Similarity=-0.035 Sum_probs=66.0
Q ss_pred hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhH
Q 036402 13 ILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTM 92 (440)
Q Consensus 13 iL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~ 92 (440)
..++.+.+-+-|.. +-....+.++...|..+- .+ +|- .-+..-+.-++++.- ++.+.++|+...+...+..
T Consensus 121 ~~A~~~~~fHWG~~-~Wa~Y~~~~l~~ay~~y~----k~--~~~-~~ss~l~pl~g~~~~-g~~g~~ID~l~i~a~~~Gv 191 (485)
T PF02028_consen 121 EWAMAYSFFHWGFH-AWAIYALVGLAIAYFFYN----KG--KPL-RISSALYPLLGDRIN-GPLGKIIDILAIFATIFGV 191 (485)
T ss_dssp HHHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHT----S-----S-SGGGGCHHHHHHHHH-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHheeeee----cC--CCC-chhhhhhhhcCCccc-CcchhhhHHHHHHHHHHHH
Confidence 44566666666665 333444444443333322 11 111 001112333444333 3345778888887777777
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCc-hhhHHHHHHHHHHHHHH
Q 036402 93 IGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLE-KATFLSIIAAVTSLVYS 163 (440)
Q Consensus 93 i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~-~l~~~s~~~~~~~~~~~ 163 (440)
..-+-....++..-++... +. ++ ....+..+++...++.-.+-...++ .++++|.+.....+...
T Consensus 192 atslGlg~~qi~~gl~~~~-Gi-~~----~~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll 257 (485)
T PF02028_consen 192 ATSLGLGVPQISAGLSSLF-GI-PN----TFGLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALL 257 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TS-SS----THHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHc-CC-CC----chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766665431 11 10 1111222222333444555555663 37777776666555433
No 115
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=34.05 E-value=5.1e+02 Score=26.44 Aligned_cols=91 Identities=11% Similarity=-0.025 Sum_probs=56.6
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHH
Q 036402 16 LPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGY 95 (440)
Q Consensus 16 lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y 95 (440)
.|......|+...+.+++...++.....-...+..+ ....+.+.+.-+.++.+..++++..-+.-..+......+..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ 345 (493)
T COG0591 267 LPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPD-LSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQ 345 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667788887777766633333333333333211 0111112234789999999999988888777777777777777
Q ss_pred HHHHHHHHHHHH
Q 036402 96 TITTAISVANLK 107 (440)
Q Consensus 96 ~i~~~~~l~~i~ 107 (440)
+...+..+..-+
T Consensus 346 ll~~ss~~t~Di 357 (493)
T COG0591 346 LLVASSAITRDI 357 (493)
T ss_pred HHhhhHHHHHHH
Confidence 777766655544
No 116
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=31.48 E-value=47 Score=21.14 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCC
Q 036402 240 SLYAIGATALFYISLGCMGYAAYGTEAP 267 (440)
Q Consensus 240 ~~~a~~~~~~~Y~~~g~~gy~~fg~~~~ 267 (440)
...++.+..++-.+.|..-|.+||+...
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 3456677777777888888999996543
No 117
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=29.98 E-value=3.6e+02 Score=27.72 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 036402 87 LLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIA 166 (440)
Q Consensus 87 ~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 166 (440)
.....+..+.+...|....++...- ..+...+..+.+..|.++.+++-.-+.+...++.++..+.+..+ =+..+.++
T Consensus 410 ~~~~~i~~FfiTsaDS~s~vl~~~s--s~~~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al-PF~~vll~ 486 (537)
T COG1292 410 LALLVIAIFFVTSADSGSYVLAMIS--SRGGEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL-PFSLVLLV 486 (537)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHh--ccCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc-cHHHHHHH
Confidence 3445566777888888877776532 22222233455566766666655555556668888888766643 23333344
Q ss_pred HHHHHHHhhhc
Q 036402 167 LCLSIAKIFSH 177 (440)
Q Consensus 167 v~~~i~~~~~~ 177 (440)
++.++++....
T Consensus 487 ~~~sl~k~l~~ 497 (537)
T COG1292 487 MMFSLIKDLKQ 497 (537)
T ss_pred HHHHHHHHHHh
Confidence 55555655443
No 118
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=29.04 E-value=3.8e+02 Score=23.11 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=13.7
Q ss_pred hhcchhhhhhhhHHHHHHhc
Q 036402 374 ISFWPLTVHLPLRMYIEQAK 393 (440)
Q Consensus 374 ~~~~~l~~ilP~l~~l~~~~ 393 (440)
+......+.+|+-+-++..+
T Consensus 61 ilt~~~~~~lP~~~~l~a~~ 80 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFY 80 (186)
T ss_pred HHHHHHHHHccHHHHHHHHH
Confidence 44557778899877776543
No 119
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=27.90 E-value=6e+02 Score=25.61 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHhccchhHHHHHhhhCCCCcc-chhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCCchH
Q 036402 201 HAFQALGNIAFAYTYSMMLLEIQDTLKSPPPE-NKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLW 279 (440)
Q Consensus 201 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~-~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~ 279 (440)
.+....++.+-...=|.--.....|+-+++-+ +++.+|.+ .+-.+.+++-..+|-..+-+|++++----+....+...
T Consensus 246 ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~-~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V 324 (451)
T COG2233 246 AILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGL-LADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYV 324 (451)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccce-eeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHH
Confidence 44555555555554443333334444433222 25677765 46677778888899999999999876544444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 036402 280 LVDIANIAVIIHLIG 294 (440)
Q Consensus 280 ~~~~~~~~~~~~~~~ 294 (440)
....+-++..+.++.
T Consensus 325 ~~~aavili~lgl~p 339 (451)
T COG2233 325 IAGAAVILILLGLFP 339 (451)
T ss_pred HHHHHHHHHHHHhhH
Confidence 445555555555443
No 120
>PRK09950 putative transporter; Provisional
Probab=26.79 E-value=7.1e+02 Score=25.58 Aligned_cols=155 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHH
Q 036402 25 WILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVA 104 (440)
Q Consensus 25 ~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~ 104 (440)
.++++.+.+-.+++.-++.++..+..........+. +.++.....+...- ..-.........+..+.+...|...
T Consensus 350 ~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~--~~~~a~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~s 424 (506)
T PRK09950 350 LGSSVGCWFFFGVLESYAIHQFINGVINVPQILNTL--GGETAVQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAVA 424 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHcc--CcchHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHhhcccCCCCCcccccccc-hhhHhhhHHHHHhhcCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 036402 105 NLKRSTCYHKKGENAKCHVSGH-LYMLTYGAIETILSQCPN-LEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKG 182 (440)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~-~~~ii~~~~~~pl~~~~~-l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~ 182 (440)
..+....-++.+.+..+....| .|.+...++-.-+..... ++.++..+.++ ..=+..+.+.+..++.+..+++..|-
T Consensus 425 ~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~-alP~~~i~~l~~~s~~k~l~~d~~~~ 503 (506)
T PRK09950 425 YTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLT-ALPFLVILLIKVYGFIRWLKQDYADV 503 (506)
T ss_pred HHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhchhcC
Q ss_pred ccc
Q 036402 183 NLM 185 (440)
Q Consensus 183 ~~~ 185 (440)
+.+
T Consensus 504 ~~~ 506 (506)
T PRK09950 504 PAH 506 (506)
T ss_pred CCC
No 121
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=25.32 E-value=5.2e+02 Score=23.49 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=58.9
Q ss_pred hhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCC-CchHHHHHHHHHHHHHHHHh
Q 036402 217 MMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFY-NVLWLVDIANIAVIIHLIGA 295 (440)
Q Consensus 217 ~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~s 295 (440)
+...-+||--|+ ++|+.+|.+....=++.+...++|+.....+-+... ..|+. -.+|.-....+++.++-...
T Consensus 71 GeAiL~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfySLHSWlGl~~v~ly~~Q~v~G 144 (245)
T KOG1619|consen 71 GEAILIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYSLHSWLGLCVVILYSLQWVFG 144 (245)
T ss_pred cceeeeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceeeHHHHHHHHHHHHHHHHHHHH
Confidence 333345555443 339999999999999999999999998888766555 23332 24688888888888888888
Q ss_pred hhhcccch
Q 036402 296 YQVFAQPI 303 (440)
Q Consensus 296 ~pl~~~p~ 303 (440)
|--+.+|+
T Consensus 145 F~tfl~pg 152 (245)
T KOG1619|consen 145 FFTFLFPG 152 (245)
T ss_pred HHHHhcCC
Confidence 87766665
No 122
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=25.02 E-value=3.5e+02 Score=27.24 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=39.7
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRS 109 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 109 (440)
.+.+..++..++....+..+......+++..+.+...+..+..+-..
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 46778888888999999999999999999999998888888776643
No 123
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=24.53 E-value=6.9e+02 Score=24.63 Aligned_cols=185 Identities=11% Similarity=0.017 Sum_probs=95.1
Q ss_pred ccHHHHHHHH-cCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhh
Q 036402 62 YTYMDAVRAL-LGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILS 140 (440)
Q Consensus 62 ~~y~~l~~~~-~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~ 140 (440)
.+..|+-++= -++...++..+.+.+...+.+.+..+..++.++... ..++..-.++++..+..-.
T Consensus 106 ltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------------gidY~tgL~ifa~~V~iYt 171 (473)
T COG4145 106 LTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------------GIDYTTGLLIFAVSVAIYT 171 (473)
T ss_pred eeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------CCCchhhHHHHHHHHHHHH
Confidence 4777776654 566778888999999999999999999998888765 3444555566666555555
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccce-ecccc-----ccchhhhhhHHHHHHHH-HHHh
Q 036402 141 QCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVM-KAGVD-----VASSKKIWHAFQALGNI-AFAY 213 (440)
Q Consensus 141 ~~~~l~~l~~~s~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~-~faf 213 (440)
.....+.....-.+.-..++.-.++...-.++. .++.++..+.. +.||+ ..+..-..++..++-+. +++-
T Consensus 172 ~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~---~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gv 248 (473)
T COG4145 172 AFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYA---GGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGV 248 (473)
T ss_pred hhcceeeeehHHHHHHHHHHHHHHHHHHHHHHh---ccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHH
Confidence 555555554444333333332221211111121 11111111100 01111 11111112344444433 2333
Q ss_pred ccchhHHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHH---HhhhhcccccCCCCC
Q 036402 214 TYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYI---SLGCMGYAAYGTEAP 267 (440)
Q Consensus 214 ~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~---~~g~~gy~~fg~~~~ 267 (440)
.+++... .|.|.-+ +.|-.++...++..+..++-. +.|..|...+.|-++
T Consensus 249 lglP~t~--vr~ia~k--Dskaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~ 301 (473)
T COG4145 249 LGLPHTA--VRCIAFK--DSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV 301 (473)
T ss_pred hcCcHHH--HHHHhcc--chhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Confidence 4444332 3444322 227777766666555544433 567777777777544
No 124
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.85 E-value=3.8e+02 Score=22.20 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=49.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCCCC-chHHHHHHHHHHHHHHHHhhhhcccch
Q 036402 234 KMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYN-VLWLVDIANIAVIIHLIGAYQVFAQPI 303 (440)
Q Consensus 234 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~s~pl~~~p~ 303 (440)
||..|.+.+..-...++..++|+..-..+-++. +. .|+.+ -+|.-...-+++.++.+..+....+|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~-~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GY-PDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 666777888888888888888887766665543 22 33332 367778888888999999988877775
No 125
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=22.66 E-value=2.2e+02 Score=21.30 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=24.3
Q ss_pred HHHhhhhcchhhhhhhhHHHHHHhcccc--chHHHHHHHH
Q 036402 369 GLLGSISFWPLTVHLPLRMYIEQAKIKR--GSLKWFMLQI 406 (440)
Q Consensus 369 ~l~Ga~~~~~l~~ilP~l~~l~~~~~~~--~~~~~~~~~~ 406 (440)
++.+...+..++++.|+.-=.|.-++++ ...+|...++
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWi 41 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWI 41 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4556667778899999988777544333 3345554443
No 126
>COG3152 Predicted membrane protein [Function unknown]
Probab=21.69 E-value=4.3e+02 Score=21.29 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHhhhhcchhhhhhhhHHHHHHh
Q 036402 338 RFTLARLLLRTAFVIFTTGVAMMF-PFFNAILGLLGSISFWPLTVHLPLRMYIEQA 392 (440)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~ia~~v-p~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~ 392 (440)
++.|...+.-+++.++...++... .++..+..+...+. .++..+|.+.-...|
T Consensus 21 ~~fW~~~L~~~ii~~vl~~~~~~~~~~i~~~~~~~~~l~--~la~~~p~lal~vrR 74 (125)
T COG3152 21 SEFWYVILFNLIIGVVLFVLAFILGLSIAGVLVLLTALY--LLALFLPTLALTVRR 74 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 444555555555555444444332 33333223333333 456667876644433
No 127
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=20.76 E-value=5.2e+02 Score=26.36 Aligned_cols=68 Identities=18% Similarity=0.106 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHH
Q 036402 89 WGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVT 158 (440)
Q Consensus 89 ~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~ 158 (440)
...+..+.+...|.....+....-++ +. .+....+-.|.++..++..-+.....++.++.++.++.+=
T Consensus 399 lil~~~f~vTs~DS~~~~la~~s~~~-~~-ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP 466 (485)
T PF02028_consen 399 LILIFIFFVTSADSATYVLAMLSSKG-DE-EPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLP 466 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTT-TS-SS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHcCC-CC-CCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455667777777777766644332 22 2234556677766666555555556788888888777543
Done!