Query 036402
Match_columns 440
No_of_seqs 131 out of 1279
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 21:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 5.5E-14 1.9E-18 139.9 23.2 351 4-396 19-380 (445)
2 3gia_A Uncharacterized protein 99.5 5.6E-11 1.9E-15 118.1 29.8 341 4-396 17-370 (444)
3 4djk_A Probable glutamate/gamm 99.3 3.1E-09 1.1E-13 107.4 29.4 278 5-309 23-318 (511)
4 2jln_A MHP1; hydantoin, transp 98.2 6.7E-05 2.3E-09 75.1 18.8 121 23-160 56-176 (501)
5 3dh4_A Sodium/glucose cotransp 97.7 0.049 1.7E-06 54.6 28.7 132 11-163 39-171 (530)
6 2xq2_A Sodium/glucose cotransp 96.8 0.53 1.8E-05 47.8 28.3 88 61-162 111-199 (593)
7 2a65_A Leutaa, Na(+):neurotran 87.7 23 0.00078 35.0 27.7 98 5-109 19-122 (519)
8 3tx3_A Uncharacterized protein 36.9 2.1E+02 0.0072 24.9 12.3 30 224-258 22-51 (249)
9 3l1l_A Arginine/agmatine antip 36.0 2.7E+02 0.0094 26.0 15.6 48 62-109 260-307 (445)
10 2wsw_A BCCT family betaine/car 22.8 3.4E+02 0.012 26.5 9.0 70 88-157 416-486 (509)
11 3gia_A Uncharacterized protein 21.2 2.7E+02 0.0092 26.1 8.2 47 63-109 259-305 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.62 E-value=5.5e-14 Score=139.88 Aligned_cols=351 Identities=12% Similarity=0.024 Sum_probs=196.6
Q ss_pred hhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402 4 AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM 83 (440)
Q Consensus 4 l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~ 83 (440)
.+++++|+|++.+|...++.|.. +++..++.++........+.|..++. |+.| +..+..++.+||+.+++....
T Consensus 19 ~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~~~~G~~~g~~~g~~ 92 (445)
T 3l1l_A 19 VSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG----GSYAYARRCFGPFLGYQTNVL 92 (445)
T ss_dssp HHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT----THHHHHHHHSCHHHHHHHHHH
T ss_pred HHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC----CchhhHHhHcCChHHHHHHHH
Confidence 46789999999999999998864 78888888999999888888865542 3322 566677899999999999888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 036402 84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYS 163 (440)
Q Consensus 84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 163 (440)
..+........+....++++...++.. + . .+....+ .+..+++.-....+..+...+++.+.....+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~-~~~~~~~-~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~ 162 (445)
T 3l1l_A 93 YWLACWIGNIAMVVIGVGYLSYFFPIL-----K---D-PWVLTIT-CVVVLWIFVLLNIVGPKMITRVQAVATVLALIPI 162 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCGGG-----G---S-HHHHHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCccc-----c---c-cHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 888877777777777777665443210 0 0 1111111 1111122222233455555555554444333221
Q ss_pred HHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHH
Q 036402 164 SIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYA 243 (440)
Q Consensus 164 ~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a 243 (440)
++ ..+......++ + +.. ..+. ........++..++....|+|.+........+|+|||+ |+.+|.+..+
T Consensus 163 ~~---~~i~~~~~~~~-~-~~~-~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~ 231 (445)
T 3l1l_A 163 VG---IAVFGWFWFRG-E-TYM-AAWN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGG 231 (445)
T ss_dssp HH---HHHTTSTTCCC-C-CCC-CC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHH
T ss_pred HH---HHHHHHHHhCh-h-hcc-cccC--ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHH
Confidence 11 11111111111 0 110 0111 11112344688899999999999999999999999983 7899999999
Q ss_pred HHHHHHHHHHhhhhcccccCCCCCCc----ccc---CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhcCC
Q 036402 244 IGATALFYISLGCMGYAAYGTEAPGN----ILT---GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWP 316 (440)
Q Consensus 244 ~~~~~~~Y~~~g~~gy~~fg~~~~~~----il~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~~~ 316 (440)
.....++|...........+.+...+ ..+ +. ..++...+..+...+..+.+.--......+.+...-.++.-
T Consensus 232 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l 310 (445)
T 3l1l_A 232 VLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA-LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF 310 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH-HCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999988877666655432111 100 11 01233445555555666555555444455555444332211
Q ss_pred CCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhcc----chHHHHHHHhhhhcchhhhhhhhHHHHHHh
Q 036402 317 TSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFP----FFNAILGLLGSISFWPLTVHLPLRMYIEQA 392 (440)
Q Consensus 317 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp----~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~ 392 (440)
.+.+.+.+..+.| ..-......+ .....+....| .++.+.++.+ .+..+.|.++.+.+++.|
T Consensus 311 P~~~~~~~~~~~P-----------~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r 376 (445)
T 3l1l_A 311 PPIFARVNKAGTP-----------VAGLIIVGIL-MTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLG 376 (445)
T ss_dssp CGGGGCCCTTCCC-----------HHHHHHHHHH-HHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhcCCCCCC-----------HHHHHHHHHH-HHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 1122221212233 1222222111 11111111223 3566666544 344788999999999887
Q ss_pred cccc
Q 036402 393 KIKR 396 (440)
Q Consensus 393 ~~~~ 396 (440)
++++
T Consensus 377 ~~~~ 380 (445)
T 3l1l_A 377 HGHF 380 (445)
T ss_dssp SSSS
T ss_pred hcCc
Confidence 6544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.47 E-value=5.6e-11 Score=118.05 Aligned_cols=341 Identities=8% Similarity=-0.010 Sum_probs=190.9
Q ss_pred hhhhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCC--ceeeh
Q 036402 4 AFTAIVGSGILALP-WSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPK--NVVVC 80 (440)
Q Consensus 4 l~~~~iG~GiL~lP-~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~--~~~l~ 80 (440)
.+++++|+|++..| .+..+.|- .+++..++.+++.......+.|..+.. |+.| ...+..++.+|++ +.+ +
T Consensus 17 ~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~-P~~G----g~y~~~~~~~G~~~~~g~-~ 89 (444)
T 3gia_A 17 AVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKI-VSNA----GPIAFIHKAIGDNIITGA-L 89 (444)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTC-CCTT----THHHHHHHHHCSSHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC----cHHHhHHHHhCcchHHHH-H
Confidence 35778999999876 44556666 678888889999999999999966543 3322 5667788899997 333 2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhH---hhhHHHHHhhcCCCCchhhHHHHHHHH
Q 036402 81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYML---TYGAIETILSQCPNLEKATFLSIIAAV 157 (440)
Q Consensus 81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~i---i~~~~~~pl~~~~~l~~l~~~s~~~~~ 157 (440)
....++........+....++++...++. .+..++.. +..+++.-....+..+...++......
T Consensus 90 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (444)
T 3gia_A 90 SILLWMSYVISIALFAKGFAGYFLPLINA-------------PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVL 156 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555556667777777777765421 01112211 112222222334456666666555544
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhh
Q 036402 158 TSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMK 237 (440)
Q Consensus 158 ~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 237 (440)
..+...++.++..+... ++ .+.. |+ .......+++.++....|+|.+........+|+|||+ |+.+
T Consensus 157 ~~i~~~~~~ii~~~~~~---~~--~~~~-----~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip 222 (444)
T 3gia_A 157 VKLLILGLFIFAGLITI---HP--SYVI-----PD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVP 222 (444)
T ss_dssp HHHHHHHHHHHHHHHHC---CG--GGTS-----CC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHc---Ch--hhcC-----CC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchh
Confidence 44333222222222221 11 1111 11 1122334678888999999999999999999999983 6799
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccCCCC----CCccccCCCC---chHHHHHHHHHHHHHHHHhhhhcccchHHHHHHH
Q 036402 238 KVSLYAIGATALFYISLGCMGYAAYGTEA----PGNILTGFYN---VLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKW 310 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~ 310 (440)
|.+..+.....++|....+......+.+. +++.+....+ .++...+..+...+..+.+.--......+.+...
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~ 302 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987776555444321 0111110000 1233344555555555555555555555555544
Q ss_pred HhhcCCCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHH
Q 036402 311 LESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIE 390 (440)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~ 390 (440)
-.++.-.+.+.+.+ .+.| ..-..... +++.+++.. .+++.+.++.+. +..+.|.++.+.+++
T Consensus 303 a~dg~lP~~f~~~~-~~~P-----------~~a~~~~~---~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~~~~~~~~ 364 (444)
T 3gia_A 303 AKDGELPEFFERKV-WFKS-----------TEGLYITS---ALGVLFALL-FNMEGVASITSA--VFMVIYLFVILSHYI 364 (444)
T ss_dssp HHHSSCCSSCCTTS-CCSC-----------THHHHHHH---HHHHHHHHH-SCHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHhCCC-CCCC-----------cHHHHHHH---HHHHHHHHH-cCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 43322112222211 1112 11111111 122222222 367777776443 447888888888888
Q ss_pred Hhcccc
Q 036402 391 QAKIKR 396 (440)
Q Consensus 391 ~~~~~~ 396 (440)
.|++++
T Consensus 365 ~r~~~~ 370 (444)
T 3gia_A 365 LIDEVG 370 (444)
T ss_dssp THHHHC
T ss_pred hhhcCC
Confidence 775543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.28 E-value=3.1e-09 Score=107.39 Aligned_cols=278 Identities=9% Similarity=0.029 Sum_probs=146.6
Q ss_pred hhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhccc--CCCCCCCCCcccHHHHHHHHcCCCceeehH
Q 036402 5 FTAIVGSGILALPWSVAQLGWILGLMILVAFAAIT-YYTAILLSDCYR--TPDPINGSRNYTYMDAVRALLGPKNVVVCG 81 (440)
Q Consensus 5 ~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~-~~s~~~l~~~~~--~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~ 81 (440)
+++++| +.++|. ..+.|.. +++..++.+.+. ......+.|... .. | .| .....+++.+||+.+++..
T Consensus 23 ~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~-P-~G----G~y~~~~~~~g~~~g~~~g 92 (511)
T 4djk_A 23 ASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGW-E-EG----GVFAWVSNTLGPRWGFAAI 92 (511)
T ss_dssp GGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---------CHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccC-C-CC----ChhhhHHhhcCchHHHHHH
Confidence 345554 567775 4666654 444444444443 336777777555 42 3 33 5566778899999988888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccch--hhH-hhhHHHHHhhcCCCCchhhHHHHHHHHH
Q 036402 82 IMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHL--YML-TYGAIETILSQCPNLEKATFLSIIAAVT 158 (440)
Q Consensus 82 ~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~i-i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 158 (440)
...++.......++....++.+...+. .+. .....+ +.+ +..+.+.-+...+..+...++..+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~-------~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~ 162 (511)
T 4djk_A 93 SFGYLQIAIGFIPMLYFVLGALSYILK---WPA-------LNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFA 162 (511)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTTTT---CGG-------GTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---Ccc-------cccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 888887777776777667766643320 000 001111 111 1122222233344556655555544332
Q ss_pred H-HHHHHHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhh
Q 036402 159 S-LVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMK 237 (440)
Q Consensus 159 ~-~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 237 (440)
. +...++.+...+.....+++...+. +++ +..+.....+...++...+|+|.+........+|+|||+ |+.+
T Consensus 163 ~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip 235 (511)
T 4djk_A 163 GILLPAFILIALAAIYLHSGAPVAIEM---DSK-TFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPG---RDYP 235 (511)
T ss_dssp TTHHHHHHHHHHHHHHTC----------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccC---ccc-ccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcc---cchh
Confidence 1 1111222222222221211110000 000 011111112344567888999999999999999999995 7899
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccCCCCCC--c--------cccCCC-CchHHHHHHHHHHHHHHHHhhhhcccchHHH
Q 036402 238 KVSLYAIGATALFYISLGCMGYAAYGTEAPG--N--------ILTGFY-NVLWLVDIANIAVIIHLIGAYQVFAQPIFAM 306 (440)
Q Consensus 238 ~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~--~--------il~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~ 306 (440)
|.+..+..+.+++|.+..+......+++... + ...+.. ...+...+..+...+..+.+.--......+.
T Consensus 236 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 315 (511)
T 4djk_A 236 LAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRG 315 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887766665543221 1 111221 0234455666666666666554444434444
Q ss_pred HHH
Q 036402 307 HEK 309 (440)
Q Consensus 307 ~~~ 309 (440)
+..
T Consensus 316 l~a 318 (511)
T 4djk_A 316 MYV 318 (511)
T ss_dssp TCH
T ss_pred HHH
Confidence 333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.21 E-value=6.7e-05 Score=75.10 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=77.3
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHH
Q 036402 23 LGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAIS 102 (440)
Q Consensus 23 ~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~ 102 (440)
.++..+++.+++-.++...-+.+......+ .| .++.++.|..||++|..+..+...+..+|-........++.
T Consensus 56 Ls~~~a~lai~lG~li~~~~~~l~~~~G~~----~G---l~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~a 128 (501)
T 2jln_A 56 FQVWQVIVAIAAGCTIAVILLFFTQSAAIR----WG---INFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALA 128 (501)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTHHHHH----HC---CCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHhh----cC---CChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444333333332221 11 37999999999999999999999999999998888889999
Q ss_pred HHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402 103 VANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL 160 (440)
Q Consensus 103 l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 160 (440)
+..++.... + ..+...+.+++.++.+++.+ ..++.++++..+.....+
T Consensus 129 l~~~~~~~~-g--------~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 129 LDEITRLLT-G--------FTNLPLWIVIFGAIQVVTTF-YGITFIRWMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHH-C--------CCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-C--------cchHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHH
Confidence 888764321 1 00112344555666666664 457777777777655444
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.67 E-value=0.049 Score=54.65 Aligned_cols=132 Identities=10% Similarity=0.088 Sum_probs=64.9
Q ss_pred hhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHHHHHH-HH
Q 036402 11 SGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSL-LW 89 (440)
Q Consensus 11 ~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~~~~~-~~ 89 (440)
..++++|-...+.|+........ .+.........+..-.++. +..|..|.-++-||++.+.+..+...+. .+
T Consensus 39 ~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~------~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~ 111 (530)
T 3dh4_A 39 EQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK------GIYTIPEFVEKRFNKKLKTILAVFWISLYIF 111 (530)
T ss_dssp HHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT------TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc------CCccHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 34567888888888753211111 1111111222222222211 2359999999999998877666554332 22
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 036402 90 GTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYS 163 (440)
Q Consensus 90 g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 163 (440)
..+.+.+...+..++.+. .++....+++..+++..-.....++...+.-.+..+.++.-.
T Consensus 112 ~~~~~~l~~~~~~~~~~~--------------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~ 171 (530)
T 3dh4_A 112 VNLTSVLYLGGLALETIL--------------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGG 171 (530)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 222233333344444432 233334445555566666677788888888888776655433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.82 E-value=0.53 Score=47.80 Aligned_cols=88 Identities=10% Similarity=0.115 Sum_probs=49.7
Q ss_pred cccHHHHHHHHcCCCceeehHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHh
Q 036402 61 NYTYMDAVRALLGPKNVVVCGIMQYS-LLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETIL 139 (440)
Q Consensus 61 ~~~y~~l~~~~~G~~~~~l~~~~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl 139 (440)
..|..|..++-||++.+.+..+...+ ..+......+...+..++.+. .++....+++.++++...
T Consensus 111 ~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------------Gi~~~~~i~i~~~i~~~Y 176 (593)
T 2xq2_A 111 IYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIPLMYSILGLALFALVY 176 (593)
T ss_dssp CCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CccHHHHHHHHHHHHHHH
Confidence 35999999999998877666544332 222223333334455555543 223334444555566666
Q ss_pred hcCCCCchhhHHHHHHHHHHHHH
Q 036402 140 SQCPNLEKATFLSIIAAVTSLVY 162 (440)
Q Consensus 140 ~~~~~l~~l~~~s~~~~~~~~~~ 162 (440)
...-.++...+.-.+..+..+.-
T Consensus 177 t~~GGl~av~~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 177 SIYGGLSAVVWTDVIQVFFLVLG 199 (593)
T ss_dssp HHTTC---CCHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHH
Confidence 67778888888877776655543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=87.72 E-value=23 Score=34.99 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=48.5
Q ss_pred hhhhhhhh-hchHHHHHHhhChhHHHHHHHH----HHHHHHHHHHHHHh-cccCCCCCCCCCcccHHHHHHHHcCCCcee
Q 036402 5 FTAIVGSG-ILALPWSVAQLGWILGLMILVA----FAAITYYTAILLSD-CYRTPDPINGSRNYTYMDAVRALLGPKNVV 78 (440)
Q Consensus 5 ~~~~iG~G-iL~lP~~f~~~G~~~gii~li~----~~~~~~~s~~~l~~-~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 78 (440)
+..++|.| +.=.||-..+-|-..-++..++ ++.=-.+.=..+.| ..++.+ . +-.+..++...++...
T Consensus 19 ~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r--~-----~~i~a~~~l~~~~~~~ 91 (519)
T 2a65_A 19 AGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH--G-----TTPAIFYLLWRNRFAK 91 (519)
T ss_dssp HHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC--C-----SHHHHHHHHSCSHHHH
T ss_pred HHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC--C-----CHHHHHHHhcCCcCCc
Confidence 45677888 4468999988775433333222 22222222223333 100110 0 2233333333221122
Q ss_pred ehHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 036402 79 VCGIMQYSLLWGTMIGYTITTAISVANLKRS 109 (440)
Q Consensus 79 l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 109 (440)
.+.....+..+..++-|.++.+-.+..+..+
T Consensus 92 giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s 122 (519)
T 2a65_A 92 ILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122 (519)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777888877777666654
No 8
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=36.94 E-value=2.1e+02 Score=24.91 Aligned_cols=30 Identities=3% Similarity=0.053 Sum_probs=20.1
Q ss_pred hhhCCCCccchhhhhHHHHHHHHHHHHHHHhhhhc
Q 036402 224 DTLKSPPPENKMMKKVSLYAIGATALFYISLGCMG 258 (440)
Q Consensus 224 ~~m~~p~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g 258 (440)
+.+++| ++++.+.....+..++|.......
T Consensus 22 ~~i~~p-----~lr~~vl~Pllinl~L~~~~~~~~ 51 (249)
T 3tx3_A 22 ELIRTK-----GLRRYVVVPILTNLILFSLAFTWL 51 (249)
T ss_dssp HHHTST-----TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 577888888888887776554443
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=36.05 E-value=2.7e+02 Score=25.97 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=42.4
Q ss_pred ccHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 036402 62 YTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRS 109 (440)
Q Consensus 62 ~~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 109 (440)
..+.++.+..+|+++..++.+...+..+++..+++...+..+......
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 378899999999999999999999999999999999999988887653
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=22.76 E-value=3.4e+02 Score=26.46 Aligned_cols=70 Identities=11% Similarity=-0.031 Sum_probs=42.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhcccCCC-CCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHH
Q 036402 88 LWGTMIGYTITTAISVANLKRSTCYHKKG-ENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAV 157 (440)
Q Consensus 88 ~~g~~i~y~i~~~~~l~~i~~~~~~~~~~-~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~ 157 (440)
....+..+.+..+|.....+....-+..+ +..+....+-.|-++..++..-|.....++.++..+.++.+
T Consensus 416 ~iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~al 486 (509)
T 2wsw_A 416 FFILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGGC 486 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34455688899999988888775544321 12233445556666665544433334568888887766643
No 11
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=21.19 E-value=2.7e+02 Score=26.06 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=37.3
Q ss_pred cHHHHHHHHcCCCceeehHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 036402 63 TYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRS 109 (440)
Q Consensus 63 ~y~~l~~~~~G~~~~~l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~ 109 (440)
...+..+..+|+.+..++.+...+..+++..+.+...+..+..+...
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56777888888888888888888888888888888878777776654
Done!