Query 036405
Match_columns 98
No_of_seqs 167 out of 1006
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.8 1.5E-18 3.2E-23 116.8 6.7 61 35-98 30-91 (142)
2 PRK10743 heat shock protein Ib 99.7 4.9E-18 1.1E-22 113.6 7.3 60 36-98 33-93 (137)
3 COG0071 IbpA Molecular chapero 99.7 8.8E-18 1.9E-22 112.9 7.7 63 35-98 38-100 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.7 5.9E-17 1.3E-21 101.1 7.7 60 39-98 1-60 (92)
5 cd06470 ACD_IbpA-B_like Alpha- 99.7 5.1E-17 1.1E-21 101.3 7.2 59 38-98 1-60 (90)
6 cd06471 ACD_LpsHSP_like Group 99.7 3E-16 6.5E-21 97.8 7.4 60 38-98 1-62 (93)
7 cd06497 ACD_alphaA-crystallin_ 99.4 9.5E-13 2.1E-17 81.6 7.2 52 41-95 4-55 (86)
8 cd06479 ACD_HspB7_like Alpha c 99.4 8.9E-13 1.9E-17 81.1 5.6 41 41-82 2-42 (81)
9 cd06475 ACD_HspB1_like Alpha c 99.4 2.3E-12 5.1E-17 79.8 7.0 44 39-83 2-45 (86)
10 PF00011 HSP20: Hsp20/alpha cr 99.4 3.3E-12 7.2E-17 80.3 7.6 55 41-98 1-55 (102)
11 cd06478 ACD_HspB4-5-6 Alpha-cr 99.4 4.5E-12 9.8E-17 78.0 7.2 52 41-95 1-52 (83)
12 cd06482 ACD_HspB10 Alpha cryst 99.3 2.8E-12 6.1E-17 79.8 5.3 39 45-84 6-44 (87)
13 cd06498 ACD_alphaB-crystallin_ 99.3 1.1E-11 2.3E-16 76.6 7.0 51 42-95 2-52 (84)
14 cd06477 ACD_HspB3_Like Alpha c 99.3 1.4E-11 3.1E-16 76.1 6.0 40 43-83 3-42 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.3 1.8E-11 4E-16 76.0 6.3 49 44-93 4-52 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.2 6E-11 1.3E-15 71.8 7.1 55 41-97 1-55 (88)
17 cd06476 ACD_HspB2_like Alpha c 99.2 4.5E-11 9.8E-16 73.7 6.5 51 42-95 2-52 (83)
18 KOG0710 Molecular chaperone (s 99.0 5.8E-10 1.3E-14 78.5 5.3 65 34-98 81-147 (196)
19 cd06526 metazoan_ACD Alpha-cry 99.0 1.5E-09 3.2E-14 66.4 5.9 38 46-84 6-43 (83)
20 cd06480 ACD_HspB8_like Alpha-c 98.7 2.4E-08 5.2E-13 62.6 5.3 51 42-95 10-60 (91)
21 cd00298 ACD_sHsps_p23-like Thi 98.3 2.6E-06 5.6E-11 49.3 5.1 40 42-82 1-40 (80)
22 cd06469 p23_DYX1C1_like p23_li 98.0 2.7E-05 5.8E-10 46.3 5.6 35 42-77 1-35 (78)
23 PF05455 GvpH: GvpH; InterPro 97.9 6.4E-05 1.4E-09 52.3 6.5 44 35-78 89-135 (177)
24 KOG3591 Alpha crystallins [Pos 97.8 9.7E-05 2.1E-09 51.2 6.4 54 38-94 63-116 (173)
25 cd06466 p23_CS_SGT1_like p23_l 97.6 9.9E-05 2.1E-09 44.3 4.2 38 41-79 1-38 (84)
26 cd06463 p23_like Proteins cont 97.6 0.00042 9E-09 40.8 6.5 37 42-79 1-37 (84)
27 PF04969 CS: CS domain; Inter 97.3 0.0013 2.9E-08 38.4 6.1 41 38-79 1-43 (79)
28 cd06465 p23_hB-ind1_like p23_l 97.1 0.0023 4.9E-08 40.6 6.0 39 38-79 1-39 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 96.9 0.0022 4.8E-08 38.8 4.4 38 41-79 1-38 (84)
30 cd00237 p23 p23 binds heat sho 96.6 0.009 2E-07 38.2 6.0 38 38-78 2-39 (106)
31 cd06467 p23_NUDC_like p23_like 96.6 0.0097 2.1E-07 35.7 5.7 37 41-78 2-39 (85)
32 cd06493 p23_NUDCD1_like p23_NU 96.6 0.0089 1.9E-07 36.3 5.5 37 41-78 2-39 (85)
33 cd06468 p23_CacyBP p23_like do 96.4 0.016 3.4E-07 35.4 5.9 39 39-78 3-44 (92)
34 cd06488 p23_melusin_like p23_l 96.3 0.021 4.6E-07 34.9 5.8 39 39-78 2-40 (87)
35 KOG1309 Suppressor of G2 allel 96.3 0.016 3.4E-07 40.7 5.7 43 37-80 3-45 (196)
36 cd06494 p23_NUDCD2_like p23-li 96.0 0.03 6.6E-07 35.0 5.5 41 36-77 4-45 (93)
37 PLN03088 SGT1, suppressor of 94.7 0.06 1.3E-06 40.7 4.7 41 37-78 156-196 (356)
38 cd06495 p23_NUDCD3_like p23-li 92.8 0.54 1.2E-05 29.8 5.8 41 37-78 4-46 (102)
39 PF08190 PIH1: pre-RNA process 92.5 0.3 6.4E-06 36.1 4.9 33 46-79 260-293 (328)
40 cd06490 p23_NCB5OR p23_like do 90.2 1 2.2E-05 27.4 4.9 38 40-78 1-40 (87)
41 cd06477 ACD_HspB3_Like Alpha c 89.5 1 2.3E-05 27.4 4.5 30 48-78 51-82 (83)
42 PF00011 HSP20: Hsp20/alpha cr 88.0 1.8 4E-05 26.4 4.9 37 47-84 55-92 (102)
43 PF08308 PEGA: PEGA domain; I 87.0 2.7 5.8E-05 24.1 5.0 41 38-78 25-66 (71)
44 cd06471 ACD_LpsHSP_like Group 86.9 1.4 3.1E-05 26.7 3.9 30 47-77 62-91 (93)
45 cd06492 p23_mNUDC_like p23-lik 85.3 3.4 7.4E-05 25.2 5.0 36 42-78 3-41 (87)
46 PF04972 BON: BON domain; Int 84.4 2.3 5E-05 23.8 3.8 26 56-82 12-37 (64)
47 cd06481 ACD_HspB9_like Alpha c 84.4 1.8 3.9E-05 26.4 3.5 32 46-78 53-86 (87)
48 cd06472 ACD_ScHsp26_like Alpha 83.9 2.3 5.1E-05 25.8 3.9 31 46-77 59-90 (92)
49 cd06464 ACD_sHsps-like Alpha-c 83.3 3 6.6E-05 24.2 4.1 33 45-78 54-87 (88)
50 cd06526 metazoan_ACD Alpha-cry 83.3 2.6 5.6E-05 25.1 3.8 31 47-78 50-82 (83)
51 cd06478 ACD_HspB4-5-6 Alpha-cr 82.9 2.5 5.5E-05 25.4 3.7 29 49-78 52-82 (83)
52 PRK11597 heat shock chaperone 82.5 4.9 0.00011 27.0 5.3 46 48-96 92-138 (142)
53 cd06480 ACD_HspB8_like Alpha-c 81.2 4.5 9.7E-05 25.1 4.4 31 47-78 58-90 (91)
54 cd06469 p23_DYX1C1_like p23_li 80.2 7.3 0.00016 22.4 5.0 33 47-80 36-69 (78)
55 cd06498 ACD_alphaB-crystallin_ 80.2 4 8.6E-05 24.7 3.9 31 48-79 51-83 (84)
56 cd06476 ACD_HspB2_like Alpha c 79.7 5.1 0.00011 24.2 4.2 30 48-78 51-82 (83)
57 cd06497 ACD_alphaA-crystallin_ 78.0 4.9 0.00011 24.4 3.8 29 49-78 55-85 (86)
58 PF12992 DUF3876: Domain of un 77.9 13 0.00027 23.4 5.7 42 34-76 22-68 (95)
59 KOG3158 HSP90 co-chaperone p23 77.5 7.2 0.00016 27.3 4.9 42 36-80 6-47 (180)
60 cd06479 ACD_HspB7_like Alpha c 76.5 6 0.00013 23.9 3.9 32 47-79 48-81 (81)
61 COG0071 IbpA Molecular chapero 76.1 11 0.00024 24.9 5.4 35 48-83 101-136 (146)
62 COG5091 SGT1 Suppressor of G2 76.1 7.3 0.00016 29.6 4.9 46 34-80 173-218 (368)
63 cd06482 ACD_HspB10 Alpha cryst 75.9 6.5 0.00014 24.1 4.0 31 47-77 54-85 (87)
64 PRK11198 LysM domain/BON super 70.6 6.7 0.00014 26.2 3.3 26 56-82 38-63 (147)
65 PF05455 GvpH: GvpH; InterPro 62.4 46 0.001 23.3 6.3 39 45-84 134-172 (177)
66 PF13620 CarboxypepD_reg: Carb 58.5 13 0.00029 21.3 2.7 29 47-75 48-77 (82)
67 PF07873 YabP: YabP family; I 56.5 11 0.00023 21.8 2.0 22 58-80 23-44 (66)
68 PRK10568 periplasmic protein; 56.0 20 0.00044 25.1 3.7 27 55-82 72-98 (203)
69 cd05770 IgC_beta2m Class I maj 54.8 38 0.00083 20.7 4.4 43 49-92 18-61 (93)
70 cd07696 IgC_CH3 CH3 domain (th 54.8 47 0.001 20.3 4.9 31 39-69 7-38 (96)
71 PF08845 SymE_toxin: Toxin Sym 53.4 14 0.0003 21.0 2.1 23 53-76 33-56 (57)
72 TIGR02856 spore_yqfC sporulati 52.0 13 0.00028 22.8 1.9 22 57-79 40-61 (85)
73 TIGR02892 spore_yabP sporulati 51.1 14 0.0003 22.7 2.0 19 59-78 23-41 (85)
74 COG4004 Uncharacterized protei 49.1 52 0.0011 20.7 4.3 33 40-77 26-58 (96)
75 PF02736 Myosin_N: Myosin N-te 47.1 23 0.0005 18.5 2.2 27 50-76 13-39 (42)
76 PRK10568 periplasmic protein; 47.0 32 0.0007 24.1 3.6 25 56-81 152-176 (203)
77 KOG3591 Alpha crystallins [Pos 46.4 36 0.00078 23.5 3.7 31 54-84 122-153 (173)
78 PF07654 C1-set: Immunoglobuli 43.1 31 0.00066 20.0 2.6 24 46-69 8-31 (83)
79 PTZ00179 60S ribosomal protein 43.0 22 0.00049 24.9 2.3 21 60-81 12-32 (189)
80 PF03983 SHD1: SLA1 homology d 42.4 33 0.00071 20.4 2.6 34 42-75 15-48 (70)
81 PRK11023 outer membrane lipopr 38.7 48 0.001 23.0 3.4 27 55-82 61-88 (191)
82 TIGR03654 L6_bact ribosomal pr 35.8 41 0.0009 23.1 2.7 21 60-81 11-31 (175)
83 TIGR03653 arch_L6P archaeal ri 35.6 35 0.00075 23.5 2.2 21 60-81 7-27 (170)
84 PRK11023 outer membrane lipopr 35.5 64 0.0014 22.3 3.6 26 55-81 139-164 (191)
85 PRK05498 rplF 50S ribosomal pr 35.5 42 0.0009 23.1 2.6 21 60-81 12-32 (178)
86 cd05847 IgC_CH2_IgE CH2 domain 34.8 1.1E+02 0.0023 18.6 4.2 24 45-68 13-36 (94)
87 PF01514 YscJ_FliF: Secretory 33.9 27 0.00058 24.6 1.5 22 53-74 179-200 (206)
88 PTZ00027 60S ribosomal protein 33.7 44 0.00096 23.4 2.5 21 60-81 13-33 (190)
89 cd03863 M14_CPD_II The second 32.8 81 0.0018 24.4 4.1 30 46-75 340-369 (375)
90 CHL00140 rpl6 ribosomal protei 32.5 49 0.0011 22.9 2.6 21 60-81 12-32 (178)
91 PF13715 DUF4480: Domain of un 31.7 80 0.0017 18.3 3.2 31 46-76 43-75 (88)
92 PF07122 VLPT: Variable length 31.4 16 0.00034 18.1 0.0 14 52-65 15-28 (30)
93 PRK05518 rpl6p 50S ribosomal p 30.7 48 0.001 23.1 2.3 21 60-81 13-33 (180)
94 PF00347 Ribosomal_L6: Ribosom 30.6 62 0.0013 18.5 2.5 20 60-80 2-21 (77)
95 PF12080 GldM_C: GldM C-termin 30.3 80 0.0017 21.8 3.4 21 50-70 17-37 (181)
96 PF10988 DUF2807: Protein of u 29.6 53 0.0012 21.7 2.4 38 39-78 12-49 (181)
97 cd03864 M14_CPN Peptidase M14 28.9 89 0.0019 24.3 3.7 30 46-75 358-387 (392)
98 cd07698 IgC_MHC_I_alpha3 Class 28.2 1.4E+02 0.0029 17.7 5.1 25 46-70 14-38 (93)
99 COG5583 Uncharacterized small 28.1 68 0.0015 18.1 2.2 25 55-79 18-42 (54)
100 PF14864 Alkyl_sulf_C: Alkyl s 28.0 1.6E+02 0.0035 18.6 4.4 30 46-77 31-60 (125)
101 PRK13605 endoribonuclease SymE 27.4 1E+02 0.0022 20.1 3.2 28 53-81 47-75 (113)
102 PF15603 Imm45: Immunity prote 27.4 1.5E+02 0.0033 18.0 4.3 24 59-82 6-29 (82)
103 PF00403 HMA: Heavy-metal-asso 26.9 39 0.00085 18.3 1.1 23 55-80 23-45 (62)
104 PF12673 DUF3794: Domain of un 26.3 1.4E+02 0.003 17.1 4.4 24 39-62 45-68 (87)
105 cd06245 M14_CPD_III The third 26.1 1.2E+02 0.0026 23.3 4.0 31 45-75 327-357 (363)
106 PRK04950 ProP expression regul 25.4 48 0.001 23.9 1.6 22 57-78 188-209 (213)
107 PF06864 PAP_PilO: Pilin acces 25.2 52 0.0011 25.5 1.9 25 53-78 384-410 (414)
108 cd05755 Ig2_ICAM-1_like Second 25.1 1.7E+02 0.0037 18.2 4.0 31 42-72 12-43 (100)
109 COG2309 AmpS Leucyl aminopepti 25.1 58 0.0013 25.5 2.1 29 53-81 249-277 (385)
110 PF12971 NAGLU_N: Alpha-N-acet 24.6 1.2E+02 0.0026 18.2 3.1 31 49-80 20-51 (86)
111 PF14730 DUF4468: Domain of un 24.1 25 0.00054 21.3 -0.1 14 50-63 2-15 (91)
112 cd07689 Ig2_VCAM-1 Second immu 23.5 2E+02 0.0044 18.1 4.0 28 44-71 13-41 (99)
113 COG2823 OsmY Predicted peripla 23.0 1.3E+02 0.0029 21.3 3.4 26 56-82 144-169 (196)
114 PF09608 Alph_Pro_TM: Putative 22.3 1.2E+02 0.0025 22.1 3.1 24 57-80 6-30 (236)
115 cd03865 M14_CPE_H Peptidase M1 21.8 1.4E+02 0.0031 23.4 3.7 30 46-75 368-397 (402)
116 PF04879 Molybdop_Fe4S4: Molyb 21.2 1.2E+02 0.0027 16.1 2.5 20 62-81 16-35 (55)
117 PF06448 DUF1081: Domain of Un 21.0 2E+02 0.0043 18.4 3.7 29 40-68 66-96 (118)
118 PF12119 DUF3581: Protein of u 21.0 1.4E+02 0.0029 21.7 3.1 36 40-81 150-185 (218)
119 COG0097 RplF Ribosomal protein 20.7 97 0.0021 21.7 2.3 20 59-79 11-30 (178)
120 TIGR02186 alph_Pro_TM conserve 20.6 1.8E+02 0.004 21.5 3.9 27 55-81 31-58 (261)
121 PF12624 Chorein_N: N-terminal 20.5 68 0.0015 20.2 1.5 21 56-77 18-38 (118)
122 PF14014 DUF4230: Protein of u 20.2 1.6E+02 0.0034 19.1 3.2 36 42-78 41-76 (157)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.76 E-value=1.5e-18 Score=116.75 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=53.6
Q ss_pred cccceeeEEE-CCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEecccC
Q 036405 35 FASAQVDWKE-TREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERGRG 98 (98)
Q Consensus 35 ~~~p~~di~e-~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~~G 98 (98)
...|++||+| ++++|+|.|+|||++|+||+|++++ ++|+|+|+++.+ .++.+|+++||+||
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g 91 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQP--EKEVKWLHQGLVNQ 91 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccc--cCCCcEEEEEEeCc
Confidence 4569999998 5789999999999999999999997 699999997643 35678999999987
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.75 E-value=4.9e-18 Score=113.59 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=52.9
Q ss_pred ccceeeEEE-CCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEecccC
Q 036405 36 ASAQVDWKE-TREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERGRG 98 (98)
Q Consensus 36 ~~p~~di~e-~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~~G 98 (98)
..|++||++ ++++|+|.|+|||++|+||+|++++ +.|+|+|+++.+. ++.+|+++||.+|
T Consensus 33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~--~~~~~~~~Er~~g 93 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ--KERTYLYQGIAER 93 (137)
T ss_pred CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc--cCCcEEEEEEECC
Confidence 349999994 8999999999999999999999998 5999999976543 4677999999987
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.8e-18 Score=112.85 Aligned_cols=63 Identities=37% Similarity=0.619 Sum_probs=57.8
Q ss_pred cccceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEecccC
Q 036405 35 FASAQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERGRG 98 (98)
Q Consensus 35 ~~~p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~~G 98 (98)
.+.|++||++++++|+|.++|||++++||+|++++ +.|+|+|+++.+...+...|+++||.||
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~ 100 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYG 100 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEee
Confidence 47899999999999999999999999999999997 6999999998866667788999999986
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.71 E-value=5.9e-17 Score=101.08 Aligned_cols=60 Identities=77% Similarity=1.229 Sum_probs=53.6
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEecccC
Q 036405 39 QVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERGRG 98 (98)
Q Consensus 39 ~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~~G 98 (98)
++||+|++++|+|.++|||++++||+|++.+++.|+|+|+++.+...++..|+++||.+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g 60 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEecc
Confidence 489999999999999999999999999998645899999987765556788999999886
No 5
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.70 E-value=5.1e-17 Score=101.28 Aligned_cols=59 Identities=14% Similarity=0.342 Sum_probs=53.4
Q ss_pred ceeeEEECC-CeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEecccC
Q 036405 38 AQVDWKETR-EAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERGRG 98 (98)
Q Consensus 38 p~~di~e~~-~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~~G 98 (98)
|++||++++ ++|+|.++|||++|+||+|++++ +.|+|+|+++.+.. ++.+|+++||.+|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g 60 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKR 60 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEece
Confidence 789999975 99999999999999999999997 69999999988765 5778999999886
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.67 E-value=3e-16 Score=97.84 Aligned_cols=60 Identities=42% Similarity=0.643 Sum_probs=52.4
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccc--cCCccEEEEecccC
Q 036405 38 AQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKE--DKNDKWHRVERGRG 98 (98)
Q Consensus 38 p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~--~~~~~~~~~Er~~G 98 (98)
|++||+|++++|+|.++|||++++||+|++.+ +.|+|+|+++...+ ..+.+|+++||.+|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g 62 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYG 62 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeecc
Confidence 47999999999999999999999999999997 69999999986433 23457999999886
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.42 E-value=9.5e-13 Score=81.60 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=44.7
Q ss_pred eEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEec
Q 036405 41 DWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVER 95 (98)
Q Consensus 41 di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er 95 (98)
+|++++++|.|.++|||++++||+|++.+ +.|+|+|++.... ++..|+++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~ef 55 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISREF 55 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEEE
Confidence 79999999999999999999999999998 6999999975443 2456888774
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.39 E-value=8.9e-13 Score=81.07 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=38.2
Q ss_pred eEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecc
Q 036405 41 DWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 41 di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~ 82 (98)
||+|++++|+|.++|||++|+||+|++.+ +.|+|+|+++.+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~ 42 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLAS 42 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecc
Confidence 79999999999999999999999999997 699999998643
No 9
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.37 E-value=2.3e-12 Score=79.85 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=39.7
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeeccc
Q 036405 39 QVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEK 83 (98)
Q Consensus 39 ~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~ 83 (98)
..||+|++++|.|.++|||+++++|+|++.+ +.|+|+|+++.+.
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~ 45 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQ 45 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCc
Confidence 3589999999999999999999999999997 6999999986543
No 10
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.37 E-value=3.3e-12 Score=80.28 Aligned_cols=55 Identities=44% Similarity=0.789 Sum_probs=43.6
Q ss_pred eEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEecccC
Q 036405 41 DWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERGRG 98 (98)
Q Consensus 41 di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~~G 98 (98)
||++++++|.|.++|||+++++|+|++.+ +.|+|+|++. ....+..++++|+.+|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~~~~~~~~~~~~~~~~ 55 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--EEEEDDRYYRSERRYG 55 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--GEECTTCEEEE-S-SE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--eeeeeeeeeecccccc
Confidence 79999999999999999999999999998 5999999998 2234566777777654
No 11
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.35 E-value=4.5e-12 Score=78.00 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=43.6
Q ss_pred eEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEec
Q 036405 41 DWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVER 95 (98)
Q Consensus 41 di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er 95 (98)
.|.+++++|+|.++|||++++||+|++.+ +.|+|+|++..+.+ +..|+++|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~--~~~~~~~ef 52 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQD--EHGFISREF 52 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcC--CCCEEEEEE
Confidence 37899999999999999999999999997 69999999764332 456887774
No 12
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.33 E-value=2.8e-12 Score=79.84 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=35.0
Q ss_pred CCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccc
Q 036405 45 TREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKE 84 (98)
Q Consensus 45 ~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~ 84 (98)
++++|+|.++|||++|+||+|++.+ +.|+|+|+++.+.+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e 44 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYD 44 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccc
Confidence 5789999999999999999999998 59999999876543
No 13
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.30 E-value=1.1e-11 Score=76.58 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=43.1
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEec
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVER 95 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er 95 (98)
+.+++++|.|.++|||++++||+|++.+ +.|+|+|+++.+. ++..|+++|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~eF 52 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISREF 52 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEEE
Confidence 6788999999999999999999999997 6999999876543 2456777774
No 14
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.27 E-value=1.4e-11 Score=76.06 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=36.3
Q ss_pred EECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeeccc
Q 036405 43 KETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEK 83 (98)
Q Consensus 43 ~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~ 83 (98)
-|++++|+|+++|||++|+||+|++.+ +.|+|+|+++.+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~ 42 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRM 42 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcccc
Confidence 468999999999999999999999998 6999999987754
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.26 E-value=1.8e-11 Score=75.98 Aligned_cols=49 Identities=27% Similarity=0.521 Sum_probs=40.4
Q ss_pred ECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEE
Q 036405 44 ETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRV 93 (98)
Q Consensus 44 e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~ 93 (98)
+.+++|.|.++|||++++||+|++.+ +.|+|+|+++.+.+.+...|.++
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~ 52 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYE 52 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEE
Confidence 56889999999999999999999997 69999999876554444555543
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.22 E-value=6e-11 Score=71.82 Aligned_cols=55 Identities=56% Similarity=0.788 Sum_probs=45.0
Q ss_pred eEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEeccc
Q 036405 41 DWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERGR 97 (98)
Q Consensus 41 di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~~ 97 (98)
|++|++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...|+.+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~ 55 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSY 55 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeC
Confidence 58899999999999999999999999998 69999999987654332 455555544
No 17
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.22 E-value=4.5e-11 Score=73.70 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=41.8
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEec
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVER 95 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er 95 (98)
+...+++|.|.++|||++++||+|++.+ +.|+|+|+++... +...|+++|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~eF 52 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFVSREF 52 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEEEEEE
Confidence 4557899999999999999999999998 5999999986533 2344777774
No 18
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.8e-10 Score=78.46 Aligned_cols=65 Identities=58% Similarity=0.868 Sum_probs=57.1
Q ss_pred ccccceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeeccccc--CCccEEEEecccC
Q 036405 34 TFASAQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKED--KNDKWHRVERGRG 98 (98)
Q Consensus 34 ~~~~p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~--~~~~~~~~Er~~G 98 (98)
..+.++.+|.++.++|++.+++||+++++|+|+++++++|+|+|++..+.+. ....|++.|+.+|
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g 147 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLG 147 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhccc
Confidence 3467889999999999999999999999999999986689999999877654 5678999999876
No 19
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.99 E-value=1.5e-09 Score=66.40 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=33.9
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccc
Q 036405 46 REAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKE 84 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~ 84 (98)
.++|.|.++||||+++||+|++++ +.|+|+|+++...+
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~ 43 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED 43 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc
Confidence 369999999999999999999997 69999999877543
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.74 E-value=2.4e-08 Score=62.63 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEec
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVER 95 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er 95 (98)
+..+++.|.|.+++.||+++||+|++.+ +.|+|+|+++.+..+ ..|..+++
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~~r~F 60 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIVSKNF 60 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEEEEEE
Confidence 4567889999999999999999999997 699999998875432 24555553
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.27 E-value=2.6e-06 Score=49.33 Aligned_cols=40 Identities=58% Similarity=0.925 Sum_probs=36.0
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecc
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~ 82 (98)
|+++++.|.|++++||+.+++|+|.+.+ +.|+|+|+....
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~ 40 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE 40 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC
Confidence 4688899999999999999999999997 699999987643
No 22
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=97.98 E-value=2.7e-05 Score=46.32 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=32.3
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEE
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g 77 (98)
++++++.+.|.+++||+++++++|++++ +.|+|++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~ 35 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF 35 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC
Confidence 4688999999999999999999999997 6999988
No 23
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.86 E-value=6.4e-05 Score=52.29 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=35.1
Q ss_pred cccceeeEEECCC-eEEEEEEcCCCCCCc-eEEEEeCC-cEEEEEEE
Q 036405 35 FASAQVDWKETRE-AHVFKADLPGLKKEE-VKVEVEDG-RVLQISGE 78 (98)
Q Consensus 35 ~~~p~~di~e~~~-~~~i~~elPG~~~ed-i~v~v~~g-~~L~I~g~ 78 (98)
...+-+++.+.++ .++|.||||||++++ |+|.|+.+ ..|+|+..
T Consensus 89 ~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~ 135 (177)
T PF05455_consen 89 EESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG 135 (177)
T ss_pred cceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC
Confidence 4567899999888 699999999999988 99999842 35666544
No 24
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=9.7e-05 Score=51.25 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=45.2
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEe
Q 036405 38 AQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVE 94 (98)
Q Consensus 38 p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~E 94 (98)
...++..+++.|.|.+|+..|++++|.|.+.+ +.|.|.|++.+.++ +..|..++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d--~~G~v~R~ 116 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKED--EHGYVSRS 116 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeeccccC--CCCeEEEE
Confidence 46788999999999999999999999999997 69999999887653 33355544
No 25
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=97.64 E-value=9.9e-05 Score=44.31 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.7
Q ss_pred eEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEe
Q 036405 41 DWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 41 di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~ 79 (98)
|++++++.+.|.+.+||+.+++++|.+.+ +.|.|++..
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~ 38 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIIL 38 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEEC
Confidence 68899999999999999999999999997 799998763
No 26
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.59 E-value=0.00042 Score=40.82 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=33.5
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEe
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~ 79 (98)
++++++.+.|.+.+||+.+++++|.+.+ +.|+|++..
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~ 37 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKG 37 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeC
Confidence 3678899999999999999999999997 699999874
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.31 E-value=0.0013 Score=38.38 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=35.1
Q ss_pred ceeeEEECCCeEEEEEEcCCC--CCCceEEEEeCCcEEEEEEEe
Q 036405 38 AQVDWKETREAHVFKADLPGL--KKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 38 p~~di~e~~~~~~i~~elPG~--~~edi~v~v~~g~~L~I~g~~ 79 (98)
|+++|+++++.+.|.+.+++. ++++++|.+.+ +.|+|+...
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~ 43 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKS 43 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEc
Confidence 678999999999999999665 49999999998 699999663
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.11 E-value=0.0023 Score=40.59 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=35.5
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEe
Q 036405 38 AQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 38 p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~ 79 (98)
|+++++.+.+.+.|.+.+||+ ++++|.+.. +.|+|++..
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~ 39 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKG 39 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEc
Confidence 689999999999999999998 889999998 699999853
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.89 E-value=0.0022 Score=38.76 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=34.7
Q ss_pred eEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEe
Q 036405 41 DWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 41 di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~ 79 (98)
|++++++.+.|.+.++|+.++++.|++.+ +.|++++..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~ 38 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKL 38 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEEC
Confidence 68899999999999999999999999998 699998764
No 30
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.65 E-value=0.009 Score=38.21 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=34.8
Q ss_pred ceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEE
Q 036405 38 AQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 38 p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~ 78 (98)
|+++++++.+.+.|++++|+ .+|++|+++. +.|+++|.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~ 39 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCL 39 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEE
Confidence 78999999999999999998 5899999998 69999984
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.61 E-value=0.0097 Score=35.65 Aligned_cols=37 Identities=30% Similarity=0.575 Sum_probs=33.1
Q ss_pred eEEECCCeEEEEEEcC-CCCCCceEEEEeCCcEEEEEEE
Q 036405 41 DWKETREAHVFKADLP-GLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 41 di~e~~~~~~i~~elP-G~~~edi~v~v~~g~~L~I~g~ 78 (98)
.++++++.+.|.+.+| |++++||+|++.. +.|+|+..
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~ 39 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVK 39 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEEC
Confidence 5789999999999997 7899999999998 68999875
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.59 E-value=0.0089 Score=36.32 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=33.0
Q ss_pred eEEECCCeEEEEEEcC-CCCCCceEEEEeCCcEEEEEEE
Q 036405 41 DWKETREAHVFKADLP-GLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 41 di~e~~~~~~i~~elP-G~~~edi~v~v~~g~~L~I~g~ 78 (98)
+++++.+.+.|.+.+| |+.++|++|++.. +.|+++..
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~ 39 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK 39 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC
Confidence 6789999999999996 9999999999998 68888753
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.44 E-value=0.016 Score=35.40 Aligned_cols=39 Identities=18% Similarity=0.438 Sum_probs=35.1
Q ss_pred eeeEEECCCeEEEEEEcCCCCC---CceEEEEeCCcEEEEEEE
Q 036405 39 QVDWKETREAHVFKADLPGLKK---EEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 39 ~~di~e~~~~~~i~~elPG~~~---edi~v~v~~g~~L~I~g~ 78 (98)
..+++++++.+.|.+.+|+..+ ++++|++.. +.|.|++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~ 44 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVH 44 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEE
Confidence 5789999999999999999987 999999997 69999874
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.27 E-value=0.021 Score=34.86 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=34.9
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEE
Q 036405 39 QVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 39 ~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~ 78 (98)
+.|++.+++.+.|.+.+.|+.++++.+.++. +.|+|+..
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~ 40 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIV 40 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEE
Confidence 4689999999999999999999999999987 68888754
No 35
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.27 E-value=0.016 Score=40.73 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=38.6
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEee
Q 036405 37 SAQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERS 80 (98)
Q Consensus 37 ~p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~ 80 (98)
.++.|+|+++..++|.+-++++.++|++|++.+ ++|.|..+-+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~ 45 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLP 45 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecC
Confidence 468899999999999999999999999999997 7888886643
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.96 E-value=0.03 Score=34.98 Aligned_cols=41 Identities=17% Similarity=0.389 Sum_probs=35.9
Q ss_pred ccceeeEEECCCeEEEEEEcC-CCCCCceEEEEeCCcEEEEEE
Q 036405 36 ASAQVDWKETREAHVFKADLP-GLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 36 ~~p~~di~e~~~~~~i~~elP-G~~~edi~v~v~~g~~L~I~g 77 (98)
..+.+.++.+.+.+.|.+.+| |++++|+.|.+.. +.|+|.-
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~ 45 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAV 45 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEE
Confidence 356789999999999999888 7999999999998 6888774
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.75 E-value=0.06 Score=40.75 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=37.4
Q ss_pred cceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEE
Q 036405 37 SAQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 37 ~p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~ 78 (98)
.+..||+.+++.++|.+-+.|+.++++.|++.. +.|+|+..
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~ 196 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIE 196 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEe
Confidence 367899999999999999999999999999997 68988864
No 38
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=92.83 E-value=0.54 Score=29.85 Aligned_cols=41 Identities=15% Similarity=0.376 Sum_probs=33.9
Q ss_pred cceeeEEECCCeEEEEEEcC-CC-CCCceEEEEeCCcEEEEEEE
Q 036405 37 SAQVDWKETREAHVFKADLP-GL-KKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 37 ~p~~di~e~~~~~~i~~elP-G~-~~edi~v~v~~g~~L~I~g~ 78 (98)
...+-+..+.+.+.|.+.+| |. +.+||.|.+.. +.|.|.-+
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~ 46 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVR 46 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEe
Confidence 45677899999999999999 54 57899999997 67777654
No 39
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=92.51 E-value=0.3 Score=36.05 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCCC-CCCceEEEEeCCcEEEEEEEe
Q 036405 46 REAHVFKADLPGL-KKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 46 ~~~~~i~~elPG~-~~edi~v~v~~g~~L~I~g~~ 79 (98)
.+.++|+++|||+ +..+|+|.|.. +.|.|....
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~ 293 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPK 293 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCC
Confidence 5899999999999 78999999998 699998765
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=90.24 E-value=1 Score=27.45 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.1
Q ss_pred eeEEECCCeEEEEEEcCC--CCCCceEEEEeCCcEEEEEEE
Q 036405 40 VDWKETREAHVFKADLPG--LKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 40 ~di~e~~~~~~i~~elPG--~~~edi~v~v~~g~~L~I~g~ 78 (98)
.|+|.+++.++|.+-..+ ..+.++.+.... +.|+|+-.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~ 40 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEII 40 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEE
Confidence 378999999999999885 444555566555 47887743
No 41
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=89.52 E-value=1 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=26.7
Q ss_pred eEEEEEEcC-CCCCCceEEEE-eCCcEEEEEEE
Q 036405 48 AHVFKADLP-GLKKEEVKVEV-EDGRVLQISGE 78 (98)
Q Consensus 48 ~~~i~~elP-G~~~edi~v~v-~~g~~L~I~g~ 78 (98)
.|.=++.|| +++.+.|+=++ .+| +|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dG-vL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDG-ILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCC-EEEEEec
Confidence 778889999 89999999997 687 9999985
No 42
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=87.96 E-value=1.8 Score=26.41 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=28.0
Q ss_pred CeEEEEEEcC-CCCCCceEEEEeCCcEEEEEEEeecccc
Q 036405 47 EAHVFKADLP-GLKKEEVKVEVEDGRVLQISGERSVEKE 84 (98)
Q Consensus 47 ~~~~i~~elP-G~~~edi~v~v~~g~~L~I~g~~~~~~~ 84 (98)
..|.-.+.|| +++.+.|+-.+.+| +|+|+..+.....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~~ 92 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEEE 92 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSCT
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEcccccc
Confidence 4667789998 57899999999997 9999998877554
No 43
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=86.97 E-value=2.7 Score=24.10 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=33.1
Q ss_pred ceeeEE-ECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEE
Q 036405 38 AQVDWK-ETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 38 p~~di~-e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~ 78 (98)
.++.+. -....|.|++..||+....-+|.+..|...+|+.+
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred CcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 345666 45889999999999999888888887777777765
No 44
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=86.87 E-value=1.4 Score=26.70 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=25.8
Q ss_pred CeEEEEEEcCCCCCCceEEEEeCCcEEEEEE
Q 036405 47 EAHVFKADLPGLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 47 ~~~~i~~elPG~~~edi~v~v~~g~~L~I~g 77 (98)
..|.-.+.||.++.+.|+-++.+| .|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 456667889999999999999997 999985
No 45
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=85.29 E-value=3.4 Score=25.17 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=28.1
Q ss_pred EEECCCeEEEEEEcC---CCCCCceEEEEeCCcEEEEEEE
Q 036405 42 WKETREAHVFKADLP---GLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 42 i~e~~~~~~i~~elP---G~~~edi~v~v~~g~~L~I~g~ 78 (98)
+..+.+++.|.+.+| |++++||+|.+.. +.|+|.-+
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~ 41 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLK 41 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEEC
Confidence 456778899999985 3788999999997 57777543
No 46
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=84.44 E-value=2.3 Score=23.78 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=20.1
Q ss_pred CCCCCCceEEEEeCCcEEEEEEEeecc
Q 036405 56 PGLKKEEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 56 PG~~~edi~v~v~~g~~L~I~g~~~~~ 82 (98)
++++..+|+|++.+| .++|+|.-...
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 356677899999986 99999997653
No 47
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=84.36 E-value=1.8 Score=26.40 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCeEEEEEEcC-CCCCCceEEEE-eCCcEEEEEEE
Q 036405 46 REAHVFKADLP-GLKKEEVKVEV-EDGRVLQISGE 78 (98)
Q Consensus 46 ~~~~~i~~elP-G~~~edi~v~v-~~g~~L~I~g~ 78 (98)
...|.=.+.|| +++.+.|+-++ .+| +|+|++-
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~~P 86 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSG-HLHIRAP 86 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCc-eEEEEcC
Confidence 46788899999 69999999999 887 9999863
No 48
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=83.91 E-value=2.3 Score=25.78 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=27.0
Q ss_pred CCeEEEEEEcC-CCCCCceEEEEeCCcEEEEEE
Q 036405 46 REAHVFKADLP-GLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 46 ~~~~~i~~elP-G~~~edi~v~v~~g~~L~I~g 77 (98)
...|.-.+.|| +++.+.|+-++.+| .|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 45888899999 58999999999998 999974
No 49
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=83.28 E-value=3 Score=24.23 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.1
Q ss_pred CCCeEEEEEEcC-CCCCCceEEEEeCCcEEEEEEE
Q 036405 45 TREAHVFKADLP-GLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 45 ~~~~~~i~~elP-G~~~edi~v~v~~g~~L~I~g~ 78 (98)
....|.-.+.|| +++.+.++-.+.+| .|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 367899999999 57889999999997 9999854
No 50
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=83.25 E-value=2.6 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=26.7
Q ss_pred CeEEEEEEcC-CCCCCceEEEEeC-CcEEEEEEE
Q 036405 47 EAHVFKADLP-GLKKEEVKVEVED-GRVLQISGE 78 (98)
Q Consensus 47 ~~~~i~~elP-G~~~edi~v~v~~-g~~L~I~g~ 78 (98)
..|.-++.|| +++.+.|+-++.+ | +|+|+..
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~G-vL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDG-VLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCc-EEEEEec
Confidence 5788889999 5899999999997 7 9999864
No 51
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=82.94 E-value=2.5 Score=25.43 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.0
Q ss_pred EEEEEEcC-CCCCCceEEEE-eCCcEEEEEEE
Q 036405 49 HVFKADLP-GLKKEEVKVEV-EDGRVLQISGE 78 (98)
Q Consensus 49 ~~i~~elP-G~~~edi~v~v-~~g~~L~I~g~ 78 (98)
|.=++.|| +++.+.|+=++ .+| +|+|+.-
T Consensus 52 f~R~~~LP~~vd~~~i~A~~~~dG-vL~I~~P 82 (83)
T cd06478 52 FHRRYRLPPGVDPAAITSSLSADG-VLTISGP 82 (83)
T ss_pred EEEEEECCCCcChHHeEEEECCCC-EEEEEec
Confidence 77789998 69999999999 587 9999864
No 52
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=82.54 E-value=4.9 Score=26.96 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=31.6
Q ss_pred eEEEEEEcC-CCCCCceEEEEeCCcEEEEEEEeecccccCCccEEEEecc
Q 036405 48 AHVFKADLP-GLKKEEVKVEVEDGRVLQISGERSVEKEDKNDKWHRVERG 96 (98)
Q Consensus 48 ~~~i~~elP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~Er~ 96 (98)
.|.=.+.|| +++.+ +-++++| +|+|+--+......+..++-..||.
T Consensus 92 ~F~R~f~LP~~vd~~--~A~~~nG-VL~I~lPK~~~~~~~~rkI~I~~~~ 138 (142)
T PRK11597 92 PFSLSFTLAENMEVS--GATFVNG-LLHIDLIRNEPEAIAPQRIAISERP 138 (142)
T ss_pred EEEEEEECCCCcccC--cCEEcCC-EEEEEEeccCccccCCcEEEECCcc
Confidence 455566688 57776 6889998 9999987754333345566666764
No 53
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=81.17 E-value=4.5 Score=25.12 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=26.4
Q ss_pred CeEEEEEEcC-CCCCCceEEEEe-CCcEEEEEEE
Q 036405 47 EAHVFKADLP-GLKKEEVKVEVE-DGRVLQISGE 78 (98)
Q Consensus 47 ~~~~i~~elP-G~~~edi~v~v~-~g~~L~I~g~ 78 (98)
.+|.=++.|| +++.++|+=.+. +| .|+|.+-
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEcC
Confidence 5677788998 799999999999 76 9999863
No 54
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=80.23 E-value=7.3 Score=22.42 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=27.8
Q ss_pred CeEEEEEEcCC-CCCCceEEEEeCCcEEEEEEEee
Q 036405 47 EAHVFKADLPG-LKKEEVKVEVEDGRVLQISGERS 80 (98)
Q Consensus 47 ~~~~i~~elPG-~~~edi~v~v~~g~~L~I~g~~~ 80 (98)
+.|.+.++||+ +++++....+.+| .|.|+=.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 56888899998 6999999999985 899996653
No 55
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=80.21 E-value=4 Score=24.71 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=26.4
Q ss_pred eEEEEEEcC-CCCCCceEEEEe-CCcEEEEEEEe
Q 036405 48 AHVFKADLP-GLKKEEVKVEVE-DGRVLQISGER 79 (98)
Q Consensus 48 ~~~i~~elP-G~~~edi~v~v~-~g~~L~I~g~~ 79 (98)
+|.=.+.|| +++.+.|+=++. +| +|+|+.-+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~dG-vL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPDG-VLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCCC-EEEEEEeC
Confidence 377788998 699999999995 87 99998754
No 56
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=79.74 E-value=5.1 Score=24.22 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=25.6
Q ss_pred eEEEEEEcC-CCCCCceEEEEe-CCcEEEEEEE
Q 036405 48 AHVFKADLP-GLKKEEVKVEVE-DGRVLQISGE 78 (98)
Q Consensus 48 ~~~i~~elP-G~~~edi~v~v~-~g~~L~I~g~ 78 (98)
+|.=++.|| +++.+.|+=.+. +| +|+|+.-
T Consensus 51 eF~R~~~LP~~vd~~~v~A~~~~dG-vL~I~~P 82 (83)
T cd06476 51 EFTRTYILPMDVDPLLVRASLSHDG-ILCIQAP 82 (83)
T ss_pred EEEEEEECCCCCChhhEEEEecCCC-EEEEEec
Confidence 377789999 699999999996 87 9999863
No 57
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=78.00 E-value=4.9 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=24.7
Q ss_pred EEEEEEcC-CCCCCceEEEE-eCCcEEEEEEE
Q 036405 49 HVFKADLP-GLKKEEVKVEV-EDGRVLQISGE 78 (98)
Q Consensus 49 ~~i~~elP-G~~~edi~v~v-~~g~~L~I~g~ 78 (98)
|.=++.|| +++.++|+=++ .+| +|+|+..
T Consensus 55 f~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~~P 85 (86)
T cd06497 55 FHRRYRLPSNVDQSAITCSLSADG-MLTFSGP 85 (86)
T ss_pred EEEEEECCCCCChHHeEEEeCCCC-EEEEEec
Confidence 66678998 59999999999 687 9999864
No 58
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=77.85 E-value=13 Score=23.37 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=32.4
Q ss_pred ccccceeeEEECCCeEEEEEEcCCC-----CCCceEEEEeCCcEEEEE
Q 036405 34 TFASAQVDWKETREAHVFKADLPGL-----KKEEVKVEVEDGRVLQIS 76 (98)
Q Consensus 34 ~~~~p~~di~e~~~~~~i~~elPG~-----~~edi~v~v~~g~~L~I~ 76 (98)
....|+|.|+++++.|.|.+--+.- +++...|.-++| .|-|.
T Consensus 22 v~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 22 VNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred cCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 3456999999999999998866654 677878887776 66655
No 59
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=77.55 E-value=7.2 Score=27.32 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=35.5
Q ss_pred ccceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEee
Q 036405 36 ASAQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERS 80 (98)
Q Consensus 36 ~~p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~ 80 (98)
..|.|=+.++.+.+.+++.++ +.++.+|.++. ..|+++|+..
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~-~~l~fs~k~~ 47 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVE--DAKDVHVNLEP-SKLTFSCKSG 47 (180)
T ss_pred cCCcchhhhhcCeEEEEEEec--cCccceeeccc-cEEEEEeccC
Confidence 458888999999999999998 56778888887 6899999864
No 60
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=76.49 E-value=6 Score=23.88 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=25.7
Q ss_pred CeEEEEEEcCC-CCCCceEEEE-eCCcEEEEEEEe
Q 036405 47 EAHVFKADLPG-LKKEEVKVEV-EDGRVLQISGER 79 (98)
Q Consensus 47 ~~~~i~~elPG-~~~edi~v~v-~~g~~L~I~g~~ 79 (98)
..|.=++.||. ++.+.|+=++ .+| +|+|+..+
T Consensus 48 g~F~R~~~LP~~vd~e~v~A~l~~~G-vL~I~~~~ 81 (81)
T cd06479 48 NTFTHKCQLPEDVDPTSVSSSLGEDG-TLTIKARR 81 (81)
T ss_pred EEEEEEEECCCCcCHHHeEEEecCCC-EEEEEecC
Confidence 46666788876 8999999998 887 99998753
No 61
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=76.08 E-value=11 Score=24.88 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=25.3
Q ss_pred eEEEEEEcCC-CCCCceEEEEeCCcEEEEEEEeeccc
Q 036405 48 AHVFKADLPG-LKKEEVKVEVEDGRVLQISGERSVEK 83 (98)
Q Consensus 48 ~~~i~~elPG-~~~edi~v~v~~g~~L~I~g~~~~~~ 83 (98)
.|.=++.||. ++.+.+.-++.+| +|+|.-.+....
T Consensus 101 ~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~~ 136 (146)
T COG0071 101 EFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEPE 136 (146)
T ss_pred eEEEEEECcccccccceeeEeeCc-EEEEEEeccccc
Confidence 3444455554 5677899999998 999998876654
No 62
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=76.05 E-value=7.3 Score=29.55 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=39.4
Q ss_pred ccccceeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEee
Q 036405 34 TFASAQVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERS 80 (98)
Q Consensus 34 ~~~~p~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~ 80 (98)
.....+.|+.+|.....|-+--|-+..++|++-++. |+|.|+-+-+
T Consensus 173 ~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~ 218 (368)
T COG5091 173 PKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPR 218 (368)
T ss_pred ccceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeecc
Confidence 345677888999999999999999999999999996 8999997643
No 63
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=75.87 E-value=6.5 Score=24.10 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.1
Q ss_pred CeEEEEEEcC-CCCCCceEEEEeCCcEEEEEE
Q 036405 47 EAHVFKADLP-GLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 47 ~~~~i~~elP-G~~~edi~v~v~~g~~L~I~g 77 (98)
..|.=.+.|| +++.+.|+=++.+|-+|+|.+
T Consensus 54 g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~ 85 (87)
T cd06482 54 MNICKEFSLPPGVDEKDVTYSYGLGSVVKIET 85 (87)
T ss_pred EEEEEEEECCCCcChHHcEEEEcCCCEEEEee
Confidence 4566679999 699999999999866999985
No 64
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=70.64 E-value=6.7 Score=26.19 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=21.9
Q ss_pred CCCCCCceEEEEeCCcEEEEEEEeecc
Q 036405 56 PGLKKEEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 56 PG~~~edi~v~v~~g~~L~I~g~~~~~ 82 (98)
.|+...+|+|++++| +++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 578888899999986 99999987654
No 65
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=62.45 E-value=46 Score=23.28 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeecccc
Q 036405 45 TREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSVEKE 84 (98)
Q Consensus 45 ~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~~~~ 84 (98)
.++.|+=++.||=-..+-+++++.+| +|+|.-+++++..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 34445557888866678889999996 9999988877544
No 66
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=58.54 E-value=13 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCCCce-EEEEeCCcEEEE
Q 036405 47 EAHVFKADLPGLKKEEV-KVEVEDGRVLQI 75 (98)
Q Consensus 47 ~~~~i~~elPG~~~edi-~v~v~~g~~L~I 75 (98)
..|.|.+..||+.+... .|.+..|+...|
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 78999999999999888 588886655554
No 67
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=56.51 E-value=11 Score=21.76 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.2
Q ss_pred CCCCceEEEEeCCcEEEEEEEee
Q 036405 58 LKKEEVKVEVEDGRVLQISGERS 80 (98)
Q Consensus 58 ~~~edi~v~v~~g~~L~I~g~~~ 80 (98)
++.+.|.|....| .|+|+|+.=
T Consensus 23 f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETTE-EEEEEEEEE
T ss_pred ECCCEEEEEeCCE-EEEEECceE
Confidence 5678899999886 999999853
No 68
>PRK10568 periplasmic protein; Provisional
Probab=55.99 E-value=20 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.3
Q ss_pred cCCCCCCceEEEEeCCcEEEEEEEeecc
Q 036405 55 LPGLKKEEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 55 lPG~~~edi~v~v~~g~~L~I~g~~~~~ 82 (98)
-|+++..+|+|.+.+| .++++|.-...
T Consensus 72 ~~~i~~~~I~V~v~~G-~V~L~G~V~s~ 98 (203)
T PRK10568 72 HDNIKSTDISVKTHQK-VVTLSGFVESQ 98 (203)
T ss_pred CCCCCCCceEEEEECC-EEEEEEEeCCH
Confidence 3667778999999997 99999998743
No 69
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=54.81 E-value=38 Score=20.74 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCCCceEEEEeCCcEEEEEEE-eecccccCCccEEE
Q 036405 49 HVFKADLPGLKKEEVKVEVEDGRVLQISGE-RSVEKEDKNDKWHR 92 (98)
Q Consensus 49 ~~i~~elPG~~~edi~v~v~~g~~L~I~g~-~~~~~~~~~~~~~~ 92 (98)
-.|..-+-||-+.+|.|+...+.. .+.+. ......+++..|..
T Consensus 18 ~~L~C~a~gFyP~~i~v~W~~dg~-~~~~~~~~~~~p~~d~tyq~ 61 (93)
T cd05770 18 NVLNCYVTGFHPPDIEIRLLKNGV-KIPKVEQSDLSFSKDWTFYL 61 (93)
T ss_pred eEEEEEEEEEeCCCCEEEEEECCE-ECCCcEECcEEECCCCCEEE
Confidence 478999999999999999765323 33332 22233455666654
No 70
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=54.76 E-value=47 Score=20.32 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=21.9
Q ss_pred eeeEEECCCeEEEEEEcCCC-CCCceEEEEeC
Q 036405 39 QVDWKETREAHVFKADLPGL-KKEEVKVEVED 69 (98)
Q Consensus 39 ~~di~e~~~~~~i~~elPG~-~~edi~v~v~~ 69 (98)
+.+-.+..+...|..-+-|+ -+.+|.|+...
T Consensus 7 s~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r 38 (96)
T cd07696 7 SPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTR 38 (96)
T ss_pred CHHHhccCCCeEEEEEEeCCCCCCCcEEEEEE
Confidence 33334445667788888888 88888888765
No 71
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=53.38 E-value=14 Score=21.00 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEcCCCCC-CceEEEEeCCcEEEEE
Q 036405 53 ADLPGLKK-EEVKVEVEDGRVLQIS 76 (98)
Q Consensus 53 ~elPG~~~-edi~v~v~~g~~L~I~ 76 (98)
++-.||.. +.|+|++.+| .|.|+
T Consensus 33 L~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEECC-EEEEe
Confidence 67789976 6899999986 89986
No 72
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=52.04 E-value=13 Score=22.75 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.7
Q ss_pred CCCCCceEEEEeCCcEEEEEEEe
Q 036405 57 GLKKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 57 G~~~edi~v~v~~g~~L~I~g~~ 79 (98)
-++.+.|.|....| .|+|+|+.
T Consensus 40 ~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 40 VFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred EECCCEEEEEcCce-EEEEEccc
Confidence 36789999999987 99999985
No 73
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=51.07 E-value=14 Score=22.73 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=10.9
Q ss_pred CCCceEEEEeCCcEEEEEEE
Q 036405 59 KKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 59 ~~edi~v~v~~g~~L~I~g~ 78 (98)
+.+.|.|....| .|+|+|+
T Consensus 23 d~~~I~l~T~~G-~L~I~G~ 41 (85)
T TIGR02892 23 DDEEILLETVMG-FLTIKGQ 41 (85)
T ss_pred CCCEEEEEeCcE-EEEEEcc
Confidence 455566665554 5666665
No 74
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.06 E-value=52 Score=20.73 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=26.4
Q ss_pred eeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEE
Q 036405 40 VDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 40 ~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g 77 (98)
++|.+.+| .|.+-.||+++ |+|..++ +.|-|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik~E~-kkL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIKPEN-KKLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEeccc-ceEEEec
Confidence 67888888 77889999875 7777777 4888887
No 75
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=47.06 E-value=23 Score=18.53 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCCceEEEEeCCcEEEEE
Q 036405 50 VFKADLPGLKKEEVKVEVEDGRVLQIS 76 (98)
Q Consensus 50 ~i~~elPG~~~edi~v~v~~g~~L~I~ 76 (98)
.+.+++-..+-+.+.|.+.+|+.++++
T Consensus 13 fv~g~I~~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 13 FVKGEIIEEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEEEEEEEEESSEEEEEETTTEEEEEE
T ss_pred EEEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 344555556667777887777666664
No 76
>PRK10568 periplasmic protein; Provisional
Probab=46.97 E-value=32 Score=24.09 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=21.4
Q ss_pred CCCCCCceEEEEeCCcEEEEEEEeec
Q 036405 56 PGLKKEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 56 PG~~~edi~v~v~~g~~L~I~g~~~~ 81 (98)
+.++..+|+|.+.+| .+++.|.-..
T Consensus 152 ~~v~~~~I~V~v~~G-~V~L~G~V~s 176 (203)
T PRK10568 152 DIVPSRKVKVETTDG-VVQLSGTVDS 176 (203)
T ss_pred CCCCcceeEEEEeCc-EEEEEEEECC
Confidence 556778999999997 9999999754
No 77
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=46.41 E-value=36 Score=23.51 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=24.4
Q ss_pred EcC-CCCCCceEEEEeCCcEEEEEEEeecccc
Q 036405 54 DLP-GLKKEEVKVEVEDGRVLQISGERSVEKE 84 (98)
Q Consensus 54 elP-G~~~edi~v~v~~g~~L~I~g~~~~~~~ 84 (98)
-|| ||+++.|.=+|..+.+|+|+|.+.....
T Consensus 122 ~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~ 153 (173)
T KOG3591|consen 122 LLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQ 153 (173)
T ss_pred cCCCCCChhheEEeeCCCceEEEEccCCCCcC
Confidence 354 7999999999885559999998876543
No 78
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=43.12 E-value=31 Score=20.03 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=21.0
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeC
Q 036405 46 REAHVFKADLPGLKKEEVKVEVED 69 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~ 69 (98)
++...|...+-||-+++|+|....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~ 31 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLK 31 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEEe
Confidence 678889999999999999999754
No 79
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=43.04 E-value=22 Score=24.89 Aligned_cols=21 Identities=38% Similarity=0.759 Sum_probs=17.2
Q ss_pred CCceEEEEeCCcEEEEEEEeec
Q 036405 60 KEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~~ 81 (98)
|++++|++++ +.|+|+|.+-.
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 5899999986 79999997643
No 80
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=42.39 E-value=33 Score=20.42 Aligned_cols=34 Identities=15% Similarity=0.447 Sum_probs=24.8
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEE
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQI 75 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I 75 (98)
|.+....|.|.|++=|+.-..|.|.-.+|..+.|
T Consensus 15 WtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~V 48 (70)
T PF03983_consen 15 WTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIAV 48 (70)
T ss_dssp EEBSSS--EEEEEEEEEETTEEEEE-TTS-EEEE
T ss_pred EEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEEe
Confidence 6777889999999999998999998887744443
No 81
>PRK11023 outer membrane lipoprotein; Provisional
Probab=38.69 E-value=48 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=22.0
Q ss_pred cCCCCC-CceEEEEeCCcEEEEEEEeecc
Q 036405 55 LPGLKK-EEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 55 lPG~~~-edi~v~v~~g~~L~I~g~~~~~ 82 (98)
=|+++. -+|+|.+.+| .++++|+-..+
T Consensus 61 ~~~l~~~~~I~V~v~~G-~V~L~G~V~~~ 88 (191)
T PRK11023 61 DEQIKKEARINVTAYQG-KVLLTGQSPNA 88 (191)
T ss_pred CcccCcCceEEEEEECC-EEEEEEEeCCH
Confidence 367775 5899999997 99999997664
No 82
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=35.77 E-value=41 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCceEEEEeCCcEEEEEEEeec
Q 036405 60 KEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~~ 81 (98)
|++++|++++ +.|+|+|..-.
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G~ 31 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKGE 31 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCeE
Confidence 5889999986 69999987643
No 83
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=35.61 E-value=35 Score=23.50 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=16.1
Q ss_pred CCceEEEEeCCcEEEEEEEeec
Q 036405 60 KEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~~ 81 (98)
|++++|++.+ +.++++|.+-.
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~ 27 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE 27 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE
Confidence 4788888886 68898887543
No 84
>PRK11023 outer membrane lipoprotein; Provisional
Probab=35.52 E-value=64 Score=22.33 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.2
Q ss_pred cCCCCCCceEEEEeCCcEEEEEEEeec
Q 036405 55 LPGLKKEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 55 lPG~~~edi~v~v~~g~~L~I~g~~~~ 81 (98)
-++++..+|+|.+.+| .+++.|.-..
T Consensus 139 ~~~v~~~~I~V~t~~G-~V~L~G~v~~ 164 (191)
T PRK11023 139 SDSVKSSNVKVTTENG-EVFLLGLVTQ 164 (191)
T ss_pred CCCCCcceEEEEEECc-EEEEEEEeCH
Confidence 4678888999999997 9999999754
No 85
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=35.50 E-value=42 Score=23.14 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=17.1
Q ss_pred CCceEEEEeCCcEEEEEEEeec
Q 036405 60 KEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~~ 81 (98)
|++++|++.+ +.|+|+|..-.
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G~ 32 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKGE 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 5899999987 69999997643
No 86
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=34.76 E-value=1.1e+02 Score=18.62 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.0
Q ss_pred CCCeEEEEEEcCCCCCCceEEEEe
Q 036405 45 TREAHVFKADLPGLKKEEVKVEVE 68 (98)
Q Consensus 45 ~~~~~~i~~elPG~~~edi~v~v~ 68 (98)
..+...|..-+-||-+.+|.|+..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~ 36 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWL 36 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEE
Confidence 345678999999999999999975
No 87
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=33.88 E-value=27 Score=24.63 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=14.2
Q ss_pred EEcCCCCCCceEEEEeCCcEEE
Q 036405 53 ADLPGLKKEEVKVEVEDGRVLQ 74 (98)
Q Consensus 53 ~elPG~~~edi~v~v~~g~~L~ 74 (98)
..+||+++++|.|--.+|+.|+
T Consensus 179 ~sV~gL~~enVtVvD~~G~~L~ 200 (206)
T PF01514_consen 179 SSVPGLKPENVTVVDQNGNLLS 200 (206)
T ss_dssp HHSTT--GGGEEEEEEET----
T ss_pred HhcCCCCcccEEEEeCCCcccc
Confidence 4589999999999999887766
No 88
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=33.70 E-value=44 Score=23.43 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.4
Q ss_pred CCceEEEEeCCcEEEEEEEeec
Q 036405 60 KEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~~ 81 (98)
|++++|++.+ +.|+|+|.+-.
T Consensus 13 P~~V~V~i~~-~~v~VkGp~G~ 33 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKYGE 33 (190)
T ss_pred CCCCEEEEEC-CEEEEECCCce
Confidence 5899999987 79999997643
No 89
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=32.80 E-value=81 Score=24.37 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeCCcEEEE
Q 036405 46 REAHVFKADLPGLKKEEVKVEVEDGRVLQI 75 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~g~~L~I 75 (98)
...|.|+|..+|++...++|.|..++..++
T Consensus 340 pG~ytl~vs~~GY~~~~~~v~V~~~~~~~~ 369 (375)
T cd03863 340 PGTYKVTASARGYDPVTKTVEVDSKGAVQV 369 (375)
T ss_pred CeeEEEEEEEcCcccEEEEEEEcCCCcEEE
Confidence 467899999999998888888876544444
No 90
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=32.50 E-value=49 Score=22.86 Aligned_cols=21 Identities=19% Similarity=0.677 Sum_probs=16.8
Q ss_pred CCceEEEEeCCcEEEEEEEeec
Q 036405 60 KEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~~ 81 (98)
|++++|++++ +.|+|+|..-+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~ 32 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 4889999986 79999987643
No 91
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=31.71 E-value=80 Score=18.28 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeCCc--EEEEE
Q 036405 46 REAHVFKADLPGLKKEEVKVEVEDGR--VLQIS 76 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~g~--~L~I~ 76 (98)
.+.|.|.+..+|+....+.|.+..++ .+.|.
T Consensus 43 ~g~~~l~is~~Gy~~~~~~i~~~~~~~~~~~i~ 75 (88)
T PF13715_consen 43 EGDYTLKISYIGYETKTITISVNSNKNTNLNIY 75 (88)
T ss_pred CCCeEEEEEEeCEEEEEEEEEecCCCEEEEEEE
Confidence 55699999999999999999987642 34444
No 92
>PF07122 VLPT: Variable length PCR target protein (VLPT); InterPro: IPR009805 This entry represents a 29 residue repeated sequence which seem to be specific to the Ehrlichia chaffeensis variable length PCR target (VLPT) protein. E. chaffeensis is a tick-transmitted rickettsial agent and is responsible for human monocytic ehrlichiosis (HME). The function of this family is unknown [].
Probab=31.39 E-value=16 Score=18.14 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=9.8
Q ss_pred EEEcCCCCCCceEE
Q 036405 52 KADLPGLKKEEVKV 65 (98)
Q Consensus 52 ~~elPG~~~edi~v 65 (98)
.++||+..+|.+.+
T Consensus 15 ~vELp~pskE~vQL 28 (30)
T PF07122_consen 15 SVELPSPSKEEVQL 28 (30)
T ss_pred ceecCCchHhhhcc
Confidence 46788887776654
No 93
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=30.73 E-value=48 Score=23.07 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=16.8
Q ss_pred CCceEEEEeCCcEEEEEEEeec
Q 036405 60 KEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~~ 81 (98)
|++++|++++ +.++++|.+-.
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G~ 33 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKGE 33 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCeE
Confidence 5888999986 68999987643
No 94
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=30.60 E-value=62 Score=18.46 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=15.1
Q ss_pred CCceEEEEeCCcEEEEEEEee
Q 036405 60 KEEVKVEVEDGRVLQISGERS 80 (98)
Q Consensus 60 ~edi~v~v~~g~~L~I~g~~~ 80 (98)
++.++|++.+ +.++++|.+-
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g 21 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG 21 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS
T ss_pred CCcEEEEEeC-cEEEEECCCE
Confidence 4678888886 6888888653
No 95
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=30.34 E-value=80 Score=21.80 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCCceEEEEeCC
Q 036405 50 VFKADLPGLKKEEVKVEVEDG 70 (98)
Q Consensus 50 ~i~~elPG~~~edi~v~v~~g 70 (98)
-|.+.+||+..+.+.++..+|
T Consensus 17 pisIsvpgv~~~~v~~s~~gg 37 (181)
T PF12080_consen 17 PISISVPGVPSNKVPASATGG 37 (181)
T ss_pred cEEEEeCCCCccccEEEeeCC
Confidence 356677888887777777653
No 96
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=29.62 E-value=53 Score=21.70 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=21.4
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEE
Q 036405 39 QVDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 39 ~~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~ 78 (98)
.+.+... +.+.|+++.|---.+.|++++++| +|.|+-+
T Consensus 12 ~V~l~~g-~~~~v~v~~~~~l~~~i~~~v~~g-~L~I~~~ 49 (181)
T PF10988_consen 12 EVELVQG-DSPSVEVEADENLLDRIKVEVKDG-TLKISYK 49 (181)
T ss_dssp EEEEEE--SS-EEEEEEEHHHHCCEEEEEETT-EEEEEE-
T ss_pred EEEEEEC-CCcEEEEEEChhhcceEEEEEECC-EEEEEEC
Confidence 3444443 444666666643346788888764 7888766
No 97
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=28.93 E-value=89 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeCCcEEEE
Q 036405 46 REAHVFKADLPGLKKEEVKVEVEDGRVLQI 75 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~g~~L~I 75 (98)
...|.|++..+|+.+..++|+|..+..+++
T Consensus 358 pG~Y~l~vs~~Gy~~~t~~v~V~~~~~~~~ 387 (392)
T cd03864 358 PGTYTVTASAPGYQPSTVTVTVGPAEATLV 387 (392)
T ss_pred CeeEEEEEEEcCceeEEEEEEEcCCCcEEE
Confidence 467889999999998888888876444444
No 98
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=28.21 E-value=1.4e+02 Score=17.70 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=21.3
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeCC
Q 036405 46 REAHVFKADLPGLKKEEVKVEVEDG 70 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~g 70 (98)
++...|...+-|+-+.+|+|+...+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~ 38 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRD 38 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEEC
Confidence 4678999999999999999997653
No 99
>COG5583 Uncharacterized small protein [Function unknown]
Probab=28.07 E-value=68 Score=18.08 Aligned_cols=25 Identities=44% Similarity=0.692 Sum_probs=19.1
Q ss_pred cCCCCCCceEEEEeCCcEEEEEEEe
Q 036405 55 LPGLKKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 55 lPG~~~edi~v~v~~g~~L~I~g~~ 79 (98)
|-|++=..+.|.|.+|.++.|.+..
T Consensus 18 Le~lkyGsV~ItVhdgqViQIE~~E 42 (54)
T COG5583 18 LEGLKYGSVTITVHDGQVIQIEASE 42 (54)
T ss_pred HhhcccceEEEEEECCEEEEEehhh
Confidence 5577778899999998767777543
No 100
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=28.00 E-value=1.6e+02 Score=18.62 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeCCcEEEEEE
Q 036405 46 REAHVFKADLPGLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g 77 (98)
+..+.|.+.+|.. .|...|+|.+| +|++.-
T Consensus 31 ~~~~~in~~~~D~-~e~~~l~l~Ng-vL~~~~ 60 (125)
T PF14864_consen 31 DKDFTINFIFTDT-GEQYTLELRNG-VLNYRK 60 (125)
T ss_dssp T--EEEEEEETTT-TEEEEEEEETT-EEEEEE
T ss_pred CCcEEEEEEEcCC-CCeEEEEEECC-EEEeec
Confidence 5578888899876 67999999997 888863
No 101
>PRK13605 endoribonuclease SymE; Provisional
Probab=27.37 E-value=1e+02 Score=20.09 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=22.7
Q ss_pred EEcCCCCC-CceEEEEeCCcEEEEEEEeec
Q 036405 53 ADLPGLKK-EEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 53 ~elPG~~~-edi~v~v~~g~~L~I~g~~~~ 81 (98)
++-.||.. ..|.|.+.+| .|.|+.+..+
T Consensus 47 LeeAGF~tG~~V~V~V~~G-~LVIt~~~~~ 75 (113)
T PRK13605 47 LEAAGFATGTAVDVRVMEG-CIVLTAQPPA 75 (113)
T ss_pred HHhhCCCCCCeEEEEEeCC-EEEEEeCCCC
Confidence 56678877 5899999997 9999988653
No 102
>PF15603 Imm45: Immunity protein 45
Probab=27.37 E-value=1.5e+02 Score=18.01 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.1
Q ss_pred CCCceEEEEeCCcEEEEEEEeecc
Q 036405 59 KKEEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 59 ~~edi~v~v~~g~~L~I~g~~~~~ 82 (98)
+...|+|++.+|.++.+.|+.-..
T Consensus 6 t~s~i~~el~~G~~~~~~GE~l~~ 29 (82)
T PF15603_consen 6 TRSYITFELEEGARRKAQGEMLLT 29 (82)
T ss_pred cCCceEEEecCCEEEEEeeeEEEe
Confidence 456788999888788888886543
No 103
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.85 E-value=39 Score=18.35 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=17.0
Q ss_pred cCCCCCCceEEEEeCCcEEEEEEEee
Q 036405 55 LPGLKKEEVKVEVEDGRVLQISGERS 80 (98)
Q Consensus 55 lPG~~~edi~v~v~~g~~L~I~g~~~ 80 (98)
+||+ .+++|.+.. +.++|.+...
T Consensus 23 ~~GV--~~v~vd~~~-~~v~v~~~~~ 45 (62)
T PF00403_consen 23 LPGV--KSVKVDLET-KTVTVTYDPD 45 (62)
T ss_dssp STTE--EEEEEETTT-TEEEEEESTT
T ss_pred CCCC--cEEEEECCC-CEEEEEEecC
Confidence 5777 677888877 5899998643
No 104
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=26.26 E-value=1.4e+02 Score=17.14 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=19.3
Q ss_pred eeeEEECCCeEEEEEEcCCCCCCc
Q 036405 39 QVDWKETREAHVFKADLPGLKKEE 62 (98)
Q Consensus 39 ~~di~e~~~~~~i~~elPG~~~ed 62 (98)
++...+.+-.|.-.+++||+.++.
T Consensus 45 ~v~~~~~~ipF~~~ie~~g~~~~~ 68 (87)
T PF12673_consen 45 PVYSVEQEIPFSQFIELPGINEGM 68 (87)
T ss_pred CEEEEEEEeeeeEEEECCCcCCCC
Confidence 466777777888899999998864
No 105
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=26.07 E-value=1.2e+02 Score=23.28 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCCeEEEEEEcCCCCCCceEEEEeCCcEEEE
Q 036405 45 TREAHVFKADLPGLKKEEVKVEVEDGRVLQI 75 (98)
Q Consensus 45 ~~~~~~i~~elPG~~~edi~v~v~~g~~L~I 75 (98)
....|.|++..+|+.....+|.|..+...++
T Consensus 327 ~pG~y~v~vs~~Gy~~~~~~V~v~~~~~~~~ 357 (363)
T cd06245 327 APGQHNINVIAEGYQQEHLPVVVSHDEASSV 357 (363)
T ss_pred CCceEEEEEEEeCceeEEEEEEEcCCCeEEE
Confidence 3567888888888888888888765433333
No 106
>PRK04950 ProP expression regulator; Provisional
Probab=25.41 E-value=48 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=16.3
Q ss_pred CCCCCceEEEEeCCcEEEEEEE
Q 036405 57 GLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 57 G~~~edi~v~v~~g~~L~I~g~ 78 (98)
-+.++++.|++..|-++.|+++
T Consensus 188 ei~kd~v~vql~~Gl~~~v~ae 209 (213)
T PRK04950 188 EITKDDVRVQLDSGLSMIVRAE 209 (213)
T ss_pred EEecCcEEEEcCCCcEEEEeHh
Confidence 3689999999998855555543
No 107
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=25.18 E-value=52 Score=25.47 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.0
Q ss_pred EEcCCCCCCceEEEEeCCcEE--EEEEE
Q 036405 53 ADLPGLKKEEVKVEVEDGRVL--QISGE 78 (98)
Q Consensus 53 ~elPG~~~edi~v~v~~g~~L--~I~g~ 78 (98)
++.||+.-..|++++++| .| +|+|.
T Consensus 384 ~~~~GlRl~~i~~~~~~g-~l~~~~~G~ 410 (414)
T PF06864_consen 384 FDQPGLRLTSITYTLNNG-QLTYTIKGV 410 (414)
T ss_pred CCCCceEEEEEEEEeeCC-eEEEEEEEE
Confidence 567999999999999986 88 67765
No 108
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=25.12 E-value=1.7e+02 Score=18.18 Aligned_cols=31 Identities=19% Similarity=0.518 Sum_probs=24.8
Q ss_pred EEECCCeEEEEEEcCCCCC-CceEEEEeCCcE
Q 036405 42 WKETREAHVFKADLPGLKK-EEVKVEVEDGRV 72 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~-edi~v~v~~g~~ 72 (98)
+...++.|.|+..++|..+ ..|.|.+-.|+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~ 43 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNE 43 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCE
Confidence 4577899999999999998 477888776643
No 109
>COG2309 AmpS Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]
Probab=25.09 E-value=58 Score=25.49 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=24.2
Q ss_pred EEcCCCCCCceEEEEeCCcEEEEEEEeec
Q 036405 53 ADLPGLKKEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 53 ~elPG~~~edi~v~v~~g~~L~I~g~~~~ 81 (98)
+--+|.-.+.|+|++++|+.+.|+|++.+
T Consensus 249 l~~~G~lie~i~l~FedG~VV~~sa~~~E 277 (385)
T COG2309 249 LSYQGTLIEGIRLTFEDGKVVEISAEKGE 277 (385)
T ss_pred CCcCCEeeeceEEEEECCEEEEEecccCH
Confidence 44567788999999999999999999743
No 110
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=24.56 E-value=1.2e+02 Score=18.22 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCCceEEEE-eCCcEEEEEEEee
Q 036405 49 HVFKADLPGLKKEEVKVEV-EDGRVLQISGERS 80 (98)
Q Consensus 49 ~~i~~elPG~~~edi~v~v-~~g~~L~I~g~~~ 80 (98)
+.+++.=+.-.++-++|+- .+| .|+|+|...
T Consensus 20 f~~~~~~~~~~~d~F~l~~~~~g-ki~I~G~s~ 51 (86)
T PF12971_consen 20 FTFELIPSSNGKDVFELSSADNG-KIVIRGNSG 51 (86)
T ss_dssp EEEEE---BTTBEEEEEEE-SSS--EEEEESSH
T ss_pred EEEEEecCCCCCCEEEEEeCCCC-eEEEEeCCH
Confidence 4555444444677788887 764 899998743
No 111
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=24.08 E-value=25 Score=21.34 Aligned_cols=14 Identities=21% Similarity=0.601 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCCce
Q 036405 50 VFKADLPGLKKEEV 63 (98)
Q Consensus 50 ~i~~elPG~~~edi 63 (98)
.-.+++||.++++|
T Consensus 2 ~~~i~vpg~sk~~l 15 (91)
T PF14730_consen 2 TKVIEVPGMSKDQL 15 (91)
T ss_pred cEEEEcCCCCHHHH
Confidence 34677888877665
No 112
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=23.48 E-value=2e+02 Score=18.12 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=23.4
Q ss_pred ECCCeEEEEEEcCCCCC-CceEEEEeCCc
Q 036405 44 ETREAHVFKADLPGLKK-EEVKVEVEDGR 71 (98)
Q Consensus 44 e~~~~~~i~~elPG~~~-edi~v~v~~g~ 71 (98)
+.+..|.|+..+||+.+ +.+.|.+-.|+
T Consensus 13 ~~G~~vtv~C~v~~v~P~~~l~v~LlkG~ 41 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPFDRLEIELLKGE 41 (99)
T ss_pred cCCceEEEEEEecCcccCCceEEEEecCc
Confidence 67889999999999987 68999984454
No 113
>COG2823 OsmY Predicted periplasmic or secreted lipoprotein [General function prediction only]
Probab=23.02 E-value=1.3e+02 Score=21.25 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=20.7
Q ss_pred CCCCCCceEEEEeCCcEEEEEEEeecc
Q 036405 56 PGLKKEEVKVEVEDGRVLQISGERSVE 82 (98)
Q Consensus 56 PG~~~edi~v~v~~g~~L~I~g~~~~~ 82 (98)
..++-.+|+|++.+| .+.+.|.-..+
T Consensus 144 ~~v~s~~IkV~t~~g-~V~L~G~V~s~ 169 (196)
T COG2823 144 DNVKSSNIKVETENG-EVYLSGLVDSQ 169 (196)
T ss_pred CCCCcceEEEEEECC-EEEEEEEeCCH
Confidence 346677899999986 99999998443
No 114
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=22.34 E-value=1.2e+02 Score=22.08 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=11.1
Q ss_pred CCCCCceEEEEe-CCcEEEEEEEee
Q 036405 57 GLKKEEVKVEVE-DGRVLQISGERS 80 (98)
Q Consensus 57 G~~~edi~v~v~-~g~~L~I~g~~~ 80 (98)
|++++.|.|+.. +|..|+|.|..+
T Consensus 6 ~lS~~~V~Its~F~G~~i~ifGai~ 30 (236)
T PF09608_consen 6 GLSQDEVAITSDFTGTEILIFGAIP 30 (236)
T ss_pred EecCCeEEEcCCCCCCEEEEEEecc
Confidence 445555555433 234455555443
No 115
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=21.81 E-value=1.4e+02 Score=23.42 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCCCCceEEEEeCCcEEEE
Q 036405 46 REAHVFKADLPGLKKEEVKVEVEDGRVLQI 75 (98)
Q Consensus 46 ~~~~~i~~elPG~~~edi~v~v~~g~~L~I 75 (98)
...|.|+|..+|+.+....|.|..+..+.+
T Consensus 368 pG~Ytv~vsa~Gy~~~~~~V~V~~~~~~~v 397 (402)
T cd03865 368 PGNYKLTASAPGYLAVVKKVAVPYSPAVRV 397 (402)
T ss_pred CEEEEEEEEecCcccEEEEEEEcCCCcEEE
Confidence 467899999999988777777765434333
No 116
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=21.17 E-value=1.2e+02 Score=16.14 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=14.0
Q ss_pred ceEEEEeCCcEEEEEEEeec
Q 036405 62 EVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 62 di~v~v~~g~~L~I~g~~~~ 81 (98)
.|.+.+.+|+.+.|+|....
T Consensus 16 ~i~~~v~~g~i~~v~g~~~~ 35 (55)
T PF04879_consen 16 GIDVYVKDGKIVKVEGDPDH 35 (55)
T ss_dssp EEEEEEETTEEEEEEE-TTS
T ss_pred cEEEEEecCceEEEECCCCC
Confidence 47888888877778876543
No 117
>PF06448 DUF1081: Domain of Unknown Function (DUF1081); InterPro: IPR009454 This entry represents a conserved open beta-sheet domain found in several lipid transport proteins, including vitellogenin and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: heavy chain lipovitellin (lipovitellin-1), phosvitin, light chain lipovitellin (lipovitellin-2), and a von Willebrand factor type D domain (YGP40) [, ]. In vitellinogen, this domain is often found as part of the lipovitellin-1 peptide product. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport
Probab=21.03 E-value=2e+02 Score=18.41 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=19.4
Q ss_pred eeEEE-CCCeEEEEEEcCCCC-CCceEEEEe
Q 036405 40 VDWKE-TREAHVFKADLPGLK-KEEVKVEVE 68 (98)
Q Consensus 40 ~di~e-~~~~~~i~~elPG~~-~edi~v~v~ 68 (98)
++... .++.+.+.++.||.+ +.++.+.+.
T Consensus 66 ~~~~~~~~~~~~l~~~tpGsk~~r~~~~~~~ 96 (118)
T PF06448_consen 66 YELQRGGDDSFKLVFDTPGSKVPREASLTLE 96 (118)
T ss_pred EccccCccceEEEEEECCCCCCCeEEEEEEE
Confidence 34444 567899999999988 455554443
No 118
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=20.96 E-value=1.4e+02 Score=21.69 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.8
Q ss_pred eeEEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEEeec
Q 036405 40 VDWKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGERSV 81 (98)
Q Consensus 40 ~di~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~~~~ 81 (98)
+=|||. +.+++.-++-...+|++.+ ..|.|.|+|..
T Consensus 150 LViYES-----Ms~~l~~Ld~~~~~l~l~~-~~l~v~GKRG~ 185 (218)
T PF12119_consen 150 LVIYES-----MSFELDRLDFTSPELELAG-ATLEVDGKRGD 185 (218)
T ss_pred eEEeEe-----eEEEecccCCCCCeeEecc-ceeEeecceee
Confidence 346763 5677778888899999997 69999999865
No 119
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=20.74 E-value=97 Score=21.69 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.7
Q ss_pred CCCceEEEEeCCcEEEEEEEe
Q 036405 59 KKEEVKVEVEDGRVLQISGER 79 (98)
Q Consensus 59 ~~edi~v~v~~g~~L~I~g~~ 79 (98)
-|++++|++++ +.++++|.+
T Consensus 11 ~P~gV~V~i~~-~~v~vkGpk 30 (178)
T COG0097 11 IPAGVTVSIEG-QVVTVKGPK 30 (178)
T ss_pred cCCCeEEEEec-cEEEEECCC
Confidence 37899999985 799998876
No 120
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=20.62 E-value=1.8e+02 Score=21.53 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=17.7
Q ss_pred cCCCCCCceEEEEe-CCcEEEEEEEeec
Q 036405 55 LPGLKKEEVKVEVE-DGRVLQISGERSV 81 (98)
Q Consensus 55 lPG~~~edi~v~v~-~g~~L~I~g~~~~ 81 (98)
+.|++++.|.|+.+ .|..|+|-|..+.
T Consensus 31 v~~lS~~~V~Its~F~G~elliFGAv~~ 58 (261)
T TIGR02186 31 EIGVSTEEIAITSNFRGADLTLFGALDN 58 (261)
T ss_pred EEEccCceEEEecCccCcEEEEEEeecC
Confidence 34677777777744 3457888887553
No 121
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=20.51 E-value=68 Score=20.23 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCCCCceEEEEeCCcEEEEEE
Q 036405 56 PGLKKEEVKVEVEDGRVLQISG 77 (98)
Q Consensus 56 PG~~~edi~v~v~~g~~L~I~g 77 (98)
-|+++++++|++-+| .++++-
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~n 38 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELRN 38 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEEc
Confidence 478889999998887 677663
No 122
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=20.17 E-value=1.6e+02 Score=19.11 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=24.7
Q ss_pred EEECCCeEEEEEEcCCCCCCceEEEEeCCcEEEEEEE
Q 036405 42 WKETREAHVFKADLPGLKKEEVKVEVEDGRVLQISGE 78 (98)
Q Consensus 42 i~e~~~~~~i~~elPG~~~edi~v~v~~g~~L~I~g~ 78 (98)
++.-...+.+-+||-.+++++|.+.=++ +.|+|.--
T Consensus 41 ~~~~~g~v~~GiDLs~i~~~~i~~d~~~-~~i~I~LP 76 (157)
T PF14014_consen 41 LVIYPGTVKAGIDLSKIKEEDIEVDEDG-KTITITLP 76 (157)
T ss_pred EEEEEEEEEEEEEhHHCCcceEEEcCCC-CEEEEECC
Confidence 4445556666778888888888776555 58888743
Done!