BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036406
         (241 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 34.7 bits (78), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQ-MNEGVNYVKYLEKKIKEL 134
           K+  H  +ER+RR  +   + SLR  +P   ++G+++   Q +++   Y++Y+ +K+  L
Sbjct: 4   KRAHHNALERKRRDHIKDSFHSLRDSVP--SLQGEKASRAQILDKATEYIQYMRRKVHTL 61

Query: 135 GVKRDELKRLSNL 147
               D+LKR + L
Sbjct: 62  QQDIDDLKRQNAL 74


>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
 pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
          Length = 80

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQ-MNEGVNYVKYLEKKIKEL 134
           K+  H  +ER+RR  +   + SLR  +P   ++G+++   Q +++   Y++Y+ +K    
Sbjct: 12  KRAHHNALERKRRDHIKDSFHSLRDSVP--SLQGEKASRAQILDKATEYIQYMRRKNHTH 69

Query: 135 GVKRDELKR 143
               D+LKR
Sbjct: 70  QQDIDDLKR 78


>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 83

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQ-MNEGVNYVKYLEKKIKEL 134
           K+  H  +ER+RR  +   + SLR  +P   ++G+++   Q +++   Y++Y+ +K    
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVP--SLQGEKASRAQILDKATEYIQYMRRKNHTH 59

Query: 135 GVKRDELKRLSNL 147
               D+LKR + L
Sbjct: 60  QQDIDDLKRQNAL 72


>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
 pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
          Length = 76

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQ-MNEGVNYVKYLEKKIKEL 134
           K+  H  +ER+RR  +   + SLR  +P   ++G+++   Q +++   Y++Y+ +K    
Sbjct: 1   KRAHHNALERKRRDHIKDSFHSLRDSVP--SLQGEKASRAQILDKATEYIQYMRRKNHTH 58

Query: 135 GVKRDELKRLSNL 147
               D+LKR + L
Sbjct: 59  QQDIDDLKRQNAL 71


>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
           BHLHZ DOMAIN
          Length = 86

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 76  KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQ-MNEGVNYVKYLEKKIKEL 134
           K+  H  +ER+RR  +   + SLR  +P   ++G+++   Q +++   Y++Y+ +K    
Sbjct: 3   KRAHHNALERKRRDHIKDSFHSLRDSVP--SLQGEKASRAQILDKATEYIQYMRRKNHTH 60

Query: 135 GVKRDELKRLSNL 147
               D+LKR + L
Sbjct: 61  QQDIDDLKRQNAL 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,096,375
Number of Sequences: 62578
Number of extensions: 219736
Number of successful extensions: 680
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 10
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)