Query 036406
Match_columns 241
No_of_seqs 142 out of 676
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 21:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.2E-15 4.2E-20 114.5 5.8 69 74-144 4-72 (82)
2 1nlw_A MAD protein, MAX dimeri 99.6 5.1E-15 1.8E-19 110.9 8.7 67 77-143 2-68 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 5.7E-15 1.9E-19 110.6 7.8 67 76-143 2-68 (83)
4 1hlo_A Protein (transcription 99.6 3.4E-15 1.2E-19 111.3 6.3 71 72-143 8-78 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.6 4.7E-15 1.6E-19 112.8 7.0 71 73-143 3-73 (88)
6 1a0a_A BHLH, protein (phosphat 99.5 4.2E-15 1.4E-19 106.6 1.4 57 76-132 2-62 (63)
7 3u5v_A Protein MAX, transcript 99.5 1.4E-14 4.8E-19 107.6 2.9 62 74-135 3-65 (76)
8 1an4_A Protein (upstream stimu 99.5 2.4E-14 8.3E-19 102.6 3.5 58 74-131 3-63 (65)
9 4ati_A MITF, microphthalmia-as 99.4 2.6E-13 8.8E-18 108.3 6.2 69 72-140 23-92 (118)
10 2ql2_B Neurod1, neurogenic dif 99.4 3.1E-13 1.1E-17 96.1 5.8 58 75-132 1-58 (60)
11 4h10_B Circadian locomoter out 99.4 1.7E-13 5.7E-18 100.6 4.4 61 72-135 4-65 (71)
12 1mdy_A Protein (MYOD BHLH doma 99.3 2.7E-12 9.1E-17 93.4 5.0 59 73-132 9-67 (68)
13 4h10_A ARYL hydrocarbon recept 99.2 1.1E-12 3.8E-17 96.7 1.2 55 72-129 5-63 (73)
14 2lfh_A DNA-binding protein inh 98.9 4.5E-10 1.5E-14 81.6 2.2 49 81-129 19-67 (68)
15 4f3l_A Mclock, circadian locom 98.8 4E-09 1.4E-13 96.3 4.2 57 71-130 7-64 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 2E-08 6.8E-13 92.9 3.3 57 71-130 8-68 (387)
17 4aya_A DNA-binding protein inh 98.6 1.1E-07 3.8E-12 73.4 6.3 52 82-133 31-82 (97)
18 4ath_A MITF, microphthalmia-as 97.9 2.5E-05 8.4E-10 58.7 7.3 55 88-142 4-59 (83)
19 1zpv_A ACT domain protein; str 90.5 1.9 6.5E-05 30.5 8.6 49 178-228 7-55 (91)
20 2nyi_A Unknown protein; protei 86.3 3.9 0.00013 33.7 9.0 49 177-227 6-54 (195)
21 1u8s_A Glycine cleavage system 84.1 5.5 0.00019 32.3 8.8 48 177-226 7-54 (192)
22 2ko1_A CTR148A, GTP pyrophosph 83.4 4.3 0.00015 28.1 6.9 42 187-228 14-55 (88)
23 3he4_B Synzip5; heterodimeric 79.3 2.7 9.2E-05 27.1 4.0 30 115-144 3-32 (46)
24 2nyi_A Unknown protein; protei 56.3 35 0.0012 27.8 7.3 46 179-226 96-147 (195)
25 2oqq_A Transcription factor HY 55.1 15 0.00051 23.8 3.7 23 122-144 3-25 (42)
26 2wt7_A Proto-oncogene protein 54.4 44 0.0015 22.7 6.4 44 84-143 1-44 (63)
27 2jhe_A Transcription regulator 52.7 34 0.0012 26.1 6.3 32 187-219 9-40 (190)
28 1u8s_A Glycine cleavage system 49.2 45 0.0015 26.7 6.8 35 179-215 96-130 (192)
29 1zme_C Proline utilization tra 48.7 18 0.00061 24.3 3.6 23 121-143 43-65 (70)
30 3p96_A Phosphoserine phosphata 44.6 62 0.0021 28.9 7.6 49 178-228 14-62 (415)
31 2l5g_A GPS2 protein, G protein 43.3 42 0.0014 21.2 4.3 27 115-141 8-34 (38)
32 1gd2_E Transcription factor PA 39.0 28 0.00095 24.7 3.4 21 121-141 28-48 (70)
33 1dh3_A Transcription factor CR 38.9 33 0.0011 23.0 3.6 22 122-143 22-43 (55)
34 1kd8_B GABH BLL, GCN4 acid bas 37.8 34 0.0012 21.4 3.2 20 124-143 3-22 (36)
35 2er8_A Regulatory protein Leu3 36.7 18 0.00062 24.5 2.1 21 121-141 48-68 (72)
36 2f06_A Conserved hypothetical 36.4 95 0.0032 23.4 6.5 38 187-224 81-118 (144)
37 2wq1_A General control protein 35.9 39 0.0013 20.7 3.2 19 124-142 2-20 (33)
38 2jee_A YIIU; FTSZ, septum, coi 33.6 57 0.002 23.9 4.4 27 117-143 15-41 (81)
39 1jnm_A Proto-oncogene C-JUN; B 32.1 48 0.0016 22.4 3.6 23 121-143 21-43 (62)
40 2oxj_A Hybrid alpha/beta pepti 31.1 54 0.0018 20.2 3.3 20 124-143 3-22 (34)
41 2dgc_A Protein (GCN4); basic d 31.0 51 0.0017 22.7 3.6 23 121-143 29-51 (63)
42 3c3g_A Alpha/beta peptide with 29.7 60 0.002 19.9 3.3 20 124-143 2-21 (33)
43 1gmj_A ATPase inhibitor; coile 29.4 1.3E+02 0.0044 22.1 5.7 45 88-143 35-79 (84)
44 1kd8_A GABH AIV, GCN4 acid bas 29.3 38 0.0013 21.2 2.4 19 124-142 3-21 (36)
45 1hwt_C Protein (heme activator 28.6 22 0.00077 24.5 1.5 21 121-141 57-77 (81)
46 1pyi_A Protein (pyrimidine pat 27.1 47 0.0016 23.6 3.1 22 121-142 47-68 (96)
47 1jg5_A GTP cyclohydrolase I fe 26.8 1.2E+02 0.004 22.3 5.0 29 193-223 53-81 (83)
48 1t2k_D Cyclic-AMP-dependent tr 25.9 71 0.0024 21.4 3.6 23 121-143 21-43 (61)
49 2hy6_A General control protein 24.5 53 0.0018 20.2 2.4 20 124-143 3-22 (34)
50 1xkm_B Distinctin chain B; por 23.8 74 0.0025 18.1 2.7 17 117-133 6-22 (26)
51 3m48_A General control protein 23.4 56 0.0019 20.0 2.3 19 125-143 3-21 (33)
52 2f1f_A Acetolactate synthase i 23.2 1.1E+02 0.0038 24.7 4.9 39 187-225 12-52 (164)
53 3c3f_A Alpha/beta peptide with 23.1 92 0.0031 19.2 3.3 19 124-142 3-21 (34)
54 3coq_A Regulatory protein GAL4 22.8 74 0.0025 22.0 3.4 22 121-142 44-65 (89)
55 1y7p_A Hypothetical protein AF 22.3 1.2E+02 0.0041 26.1 5.1 41 187-229 13-58 (223)
56 2akf_A Coronin-1A; coiled coil 21.2 1.1E+02 0.0036 18.4 3.2 19 124-142 8-26 (32)
57 2r2v_A GCN4 leucine zipper; co 20.8 1E+02 0.0035 19.0 3.2 19 124-142 3-21 (34)
58 3n0v_A Formyltetrahydrofolate 20.5 2.4E+02 0.0082 24.6 6.9 47 178-226 10-58 (286)
59 3lou_A Formyltetrahydrofolate 20.3 2.8E+02 0.0096 24.3 7.3 48 178-227 12-61 (292)
60 2pc6_A Probable acetolactate s 20.0 1.3E+02 0.0044 24.4 4.7 39 187-225 13-53 (165)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=1.2e-15 Score=114.50 Aligned_cols=69 Identities=17% Similarity=0.322 Sum_probs=59.7
Q ss_pred ccccccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036406 74 NNKKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELKRL 144 (241)
Q Consensus 74 ~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~~~ 144 (241)
..++..|+.+||+||.+||+.|..|++|||... .|.+.+++|.+||+||++||.+++.|+.+.+.+...
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~--~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999852 244444559999999999999999999998888754
No 2
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=5.1e-15 Score=110.86 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=62.2
Q ss_pred cccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036406 77 KLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 77 k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
+..||..||+||..||..|..|+++||......|+|.+++|..|++||++|+++.++|..+++.+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999877788898999999999999999999999998887754
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.56 E-value=5.7e-15 Score=110.64 Aligned_cols=67 Identities=28% Similarity=0.472 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036406 76 KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 76 ~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
+|..|+.+||+||..||..|..|+++||... ..|.|.+++|..||+||+.|++++++|+.+++++..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999753 346777788999999999999999999998888765
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=3.4e-15 Score=111.29 Aligned_cols=71 Identities=27% Similarity=0.440 Sum_probs=63.4
Q ss_pred CcccccccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036406 72 YNNNKKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 72 ~~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
....++..|+.+||+||..||..|..|+++||.... .|.|.+++|..||+||++|++++++|+.+.+.|..
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999997542 47888888999999999999999999999888764
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=4.7e-15 Score=112.83 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=62.8
Q ss_pred cccccccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036406 73 NNNKKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 73 ~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
+..++..|+..||+||..||+.|..|+++||......|.|.+.+|..||+||++|+++.+.|...++.+..
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999998766668888888999999999999999998877766543
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.49 E-value=4.2e-15 Score=106.65 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=49.3
Q ss_pred ccccchHHHHHHHHHHHHhHHHHHccCCCCCcC----CCCchhhhHHHHHHHHHHHHHHHH
Q 036406 76 KKLMHRDVERQRRQEMATLYASLRALLPLEFIK----GKRSISDQMNEGVNYVKYLEKKIK 132 (241)
Q Consensus 76 ~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~----~K~Si~~~l~eAI~YIk~Lq~~v~ 132 (241)
+|.+|+.+||.||.+||..|..|++|||...+. .|.|.+++|+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 688999999999999999999999999976443 356666779999999999998753
No 7
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.47 E-value=1.4e-14 Score=107.61 Aligned_cols=62 Identities=19% Similarity=0.360 Sum_probs=51.2
Q ss_pred ccccccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCC-chhhhHHHHHHHHHHHHHHHHHHH
Q 036406 74 NNKKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKR-SISDQMNEGVNYVKYLEKKIKELG 135 (241)
Q Consensus 74 ~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~-Si~~~l~eAI~YIk~Lq~~v~~L~ 135 (241)
..+|..||..||+||..||+.|..||.+||.....+|+ |..++|..||+||+.||+++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999965556676 788889999999999999999876
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=2.4e-14 Score=102.58 Aligned_cols=58 Identities=19% Similarity=0.420 Sum_probs=48.8
Q ss_pred ccccccchHHHHHHHHHHHHhHHHHHccCCCCCcC---CCCchhhhHHHHHHHHHHHHHHH
Q 036406 74 NNKKLMHRDVERQRRQEMATLYASLRALLPLEFIK---GKRSISDQMNEGVNYVKYLEKKI 131 (241)
Q Consensus 74 ~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~---~K~Si~~~l~eAI~YIk~Lq~~v 131 (241)
..++..|+.+||+||..||..|..|++|||..... .|.+.+++|..||+||++||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999987632 24444444999999999999764
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.40 E-value=2.6e-13 Score=108.35 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=51.4
Q ss_pred CcccccccchHHHHHHHHHHHHhHHHHHccCCCCCcC-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036406 72 YNNNKKLMHRDVERQRRQEMATLYASLRALLPLEFIK-GKRSISDQMNEGVNYVKYLEKKIKELGVKRDE 140 (241)
Q Consensus 72 ~~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~-~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~e 140 (241)
....++..|+.+||+||.+||+.|..|++|||..... .|.+.+++|..||+||++||.+++.|+....+
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999987653 36666777999999999999999999865433
No 10
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.40 E-value=3.1e-13 Score=96.07 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=53.7
Q ss_pred cccccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHH
Q 036406 75 NKKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIK 132 (241)
Q Consensus 75 ~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~ 132 (241)
+++..||..||+|+..||..|..||.+||......|.|+.++|..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999998777899999999999999999998764
No 11
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=100.64 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=52.7
Q ss_pred CcccccccchHHHHHHHHHHHHhHHHHHccCCCC-CcCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 036406 72 YNNNKKLMHRDVERQRRQEMATLYASLRALLPLE-FIKGKRSISDQMNEGVNYVKYLEKKIKELG 135 (241)
Q Consensus 72 ~~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~-~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~ 135 (241)
....++.+|+.+||+||.+||..|..|++|||.. .+.+|++| |..||+||++||+++.=|+
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sI---L~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHH---HHHHHHHHHHHHHhhhHHH
Confidence 4568899999999999999999999999999963 35566666 9999999999999887654
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.28 E-value=2.7e-12 Score=93.42 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=52.9
Q ss_pred cccccccchHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHH
Q 036406 73 NNNKKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIK 132 (241)
Q Consensus 73 ~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~ 132 (241)
...++..||..||+|+..||+.|..||.+||... ..|.|..++|..||+||..|++.++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4578889999999999999999999999999754 5689999999999999999998653
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.24 E-value=1.1e-12 Score=96.67 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=48.2
Q ss_pred CcccccccchHHHHHHHHHHHHhHHHHHccCCCC----CcCCCCchhhhHHHHHHHHHHHHH
Q 036406 72 YNNNKKLMHRDVERQRRQEMATLYASLRALLPLE----FIKGKRSISDQMNEGVNYVKYLEK 129 (241)
Q Consensus 72 ~~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP~~----~~~~K~Si~~~l~eAI~YIk~Lq~ 129 (241)
+...++..|+.+||+||.+||..|..|++|||.. .+.+|++| |..||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasI---L~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHH---HHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHH---HHHHHHHHHHHhc
Confidence 4567889999999999999999999999999965 46667766 9999999999974
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.89 E-value=4.5e-10 Score=81.55 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHH
Q 036406 81 RDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEK 129 (241)
Q Consensus 81 ~~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~ 129 (241)
++.||+|+..||..|..||.+||......|.|+.++|.-||+||..||+
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4569999999999999999999998888899999999999999999984
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.75 E-value=4e-09 Score=96.35 Aligned_cols=57 Identities=16% Similarity=0.403 Sum_probs=40.8
Q ss_pred CCcccccccchHHHHHHHHHHHHhHHHHHccCC-CCCcCCCCchhhhHHHHHHHHHHHHHH
Q 036406 71 NYNNNKKLMHRDVERQRRQEMATLYASLRALLP-LEFIKGKRSISDQMNEGVNYVKYLEKK 130 (241)
Q Consensus 71 ~~~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP-~~~~~~K~Si~~~l~eAI~YIk~Lq~~ 130 (241)
.....++..|+.+||+||.+||..|..|++||| ...+.+|++| |..||.||+.|+..
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~i---l~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKET 64 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHH---HHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHH---HHHHHHHHHHHHhh
Confidence 345688999999999999999999999999999 4557778877 99999999999864
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.58 E-value=2e-08 Score=92.90 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=49.3
Q ss_pred CCcccccccchHHHHHHHHHHHHhHHHHHccCC----CCCcCCCCchhhhHHHHHHHHHHHHHH
Q 036406 71 NYNNNKKLMHRDVERQRRQEMATLYASLRALLP----LEFIKGKRSISDQMNEGVNYVKYLEKK 130 (241)
Q Consensus 71 ~~~~~~k~~H~~~ER~RR~~mn~~f~~LrsLlP----~~~~~~K~Si~~~l~eAI~YIk~Lq~~ 130 (241)
.+...+|.+|+.+||+||.+||..|..|++||| ...+.+|+|| |..||.|||.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~i---l~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHH---HHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHH---HHHHHHHHHHhhcc
Confidence 445678999999999999999999999999999 5667888888 99999999999843
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.55 E-value=1.1e-07 Score=73.43 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHH
Q 036406 82 DVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKE 133 (241)
Q Consensus 82 ~~ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~ 133 (241)
..||+|-..||..|..||.+||......|.|+.++|.-||+||..|++-+++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999999999987777999999999999999999988764
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.95 E-value=2.5e-05 Score=58.67 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=44.6
Q ss_pred HHHHHHhHHHHHccCCCCC-cCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036406 88 RQEMATLYASLRALLPLEF-IKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 88 R~~mn~~f~~LrsLlP~~~-~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~ 142 (241)
|-.+|..+..|..|||... +..|.+...+|..||+||++||..++.+.+.-....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k 59 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK 59 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999753 444778888899999999999998887776544433
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=90.49 E-value=1.9 Score=30.53 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=39.9
Q ss_pred EEEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 036406 178 EIAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTRVDERLLHTIQAELNN 228 (241)
Q Consensus 178 eI~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~~~~~vl~tI~akv~~ 228 (241)
.+.+.| .+++|.+.+|..+|-++|..|.+.+....++..+..+.+.+.+
T Consensus 7 ~l~v~~--~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~ 55 (91)
T 1zpv_A 7 IITVVG--KDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE 55 (91)
T ss_dssp EEEEEE--SCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEE--CCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC
Confidence 344444 3589999999999999999999999888778777777777765
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=86.32 E-value=3.9 Score=33.71 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=40.7
Q ss_pred EEEEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEec
Q 036406 177 IEIAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTRVDERLLHTIQAELN 227 (241)
Q Consensus 177 veI~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~~~~~vl~tI~akv~ 227 (241)
+.|.+.|. ++++++.+|..+|.++|+.|+.+...+..|.++-.+.+...
T Consensus 6 ~~ltv~~~--DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 6 FVVSVAGS--DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEeC--CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 45666653 58999999999999999999999999988887777777654
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=84.13 E-value=5.5 Score=32.34 Aligned_cols=48 Identities=6% Similarity=0.054 Sum_probs=40.0
Q ss_pred EEEEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 036406 177 IEIAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTRVDERLLHTIQAEL 226 (241)
Q Consensus 177 veI~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~~~~~vl~tI~akv 226 (241)
..|.+.|. +++|++.+|..+|.++|+.|+.+......|.++.++.+..
T Consensus 7 ~~itv~~~--DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 7 LVITAVGT--DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEcC--CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 44555553 5899999999999999999999999888888877777764
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=83.37 E-value=4.3 Score=28.14 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=34.1
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 036406 187 EQELPLSKVLEVLLDEGLCVVNCVSTRVDERLLHTIQAELNN 228 (241)
Q Consensus 187 ~~~~~Lsrvl~aLeelgLdVvsa~~S~~~~~vl~tI~akv~~ 228 (241)
+++|.|.+|..+|.+.|+.|.+......++.....+.+.+.+
T Consensus 14 Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 14 DKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp CCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 588999999999999999999999887666444566666654
No 23
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=79.26 E-value=2.7 Score=27.09 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036406 115 DQMNEGVNYVKYLEKKIKELGVKRDELKRL 144 (241)
Q Consensus 115 ~~l~eAI~YIk~Lq~~v~~L~~~k~el~~~ 144 (241)
.++.+--+||.+|+++..+|..-++.++..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfa 32 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFA 32 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 357888899999999999999888777643
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=56.33 E-value=35 Score=27.79 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=34.7
Q ss_pred EEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEeeeC------CeEEEEEEEEe
Q 036406 179 IAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTRVD------ERLLHTIQAEL 226 (241)
Q Consensus 179 I~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~~~------~~vl~tI~akv 226 (241)
|.+.| .+++|++.+|-..|-++|+.|+++...+.+ +.++-.+...+
T Consensus 96 ltv~g--~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~ 147 (195)
T 2nyi_A 96 LYVEG--PDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF 147 (195)
T ss_dssp EEEEE--ECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE
T ss_pred EEEEe--CCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc
Confidence 44445 358999999999999999999999988765 44444555544
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.15 E-value=15 Score=23.80 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 036406 122 NYVKYLEKKIKELGVKRDELKRL 144 (241)
Q Consensus 122 ~YIk~Lq~~v~~L~~~k~el~~~ 144 (241)
.|+-+|+.++++|+.+..+|...
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999888887654
No 26
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.42 E-value=44 Score=22.73 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036406 84 ERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 84 ER~RR~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
||++|.......++-++= ..--.|+.+|+.+++.|+.....|..
T Consensus 1 Ekr~rrrerNR~AA~rcR----------------~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR----------------NRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565666666666651 12346788888888888877766654
No 27
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=52.70 E-value=34 Score=26.10 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEeeeCCeEE
Q 036406 187 EQELPLSKVLEVLLDEGLCVVNCVSTRVDERLL 219 (241)
Q Consensus 187 ~~~~~Lsrvl~aLeelgLdVvsa~~S~~~~~vl 219 (241)
++.++|.+|+.+|.+.++++.++++.+. |.+.
T Consensus 9 dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~i~ 40 (190)
T 2jhe_A 9 DRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIY 40 (190)
T ss_dssp SCTTHHHHHHHHHHHTTCCEEEEEEETT-TEEE
T ss_pred cCCcHHHHHHHHHHHcCCCeEEEEEecC-CEEE
Confidence 5889999999999999999999999766 4433
No 28
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=49.15 E-value=45 Score=26.71 Aligned_cols=35 Identities=3% Similarity=0.003 Sum_probs=28.5
Q ss_pred EEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEeeeC
Q 036406 179 IAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTRVD 215 (241)
Q Consensus 179 I~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~~~ 215 (241)
|.+.| .++++.+.+|...|.++|++|..+...+.+
T Consensus 96 l~v~~--~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 96 VYVES--DDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEE--SCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEe--CCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 44444 358899999999999999999999887654
No 29
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=48.72 E-value=18 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 036406 121 VNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
-.||..|+++++.|+.....+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999988877754
No 30
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=44.64 E-value=62 Score=28.89 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=40.9
Q ss_pred EEEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 036406 178 EIAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTRVDERLLHTIQAELNN 228 (241)
Q Consensus 178 eI~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~~~~~vl~tI~akv~~ 228 (241)
-|++.| ++++|+...|...|-++|..++.++-+..+|.++-.+.+.+..
T Consensus 14 ~lt~~g--~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~ 62 (415)
T 3p96_A 14 LITVTG--VDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA 62 (415)
T ss_dssp EEEEEE--ECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH
T ss_pred EEEEEc--CCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC
Confidence 355555 3689999999999999999999999999999888777777654
No 31
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.30 E-value=42 Score=21.17 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036406 115 DQMNEGVNYVKYLEKKIKELGVKRDEL 141 (241)
Q Consensus 115 ~~l~eAI~YIk~Lq~~v~~L~~~k~el 141 (241)
.+|+++=+-|-.|+.+++.|...|-.+
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999888665
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.98 E-value=28 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036406 121 VNYVKYLEKKIKELGVKRDEL 141 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el 141 (241)
-.||++|+.+|.+|+.....+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998765544
No 33
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.93 E-value=33 Score=22.99 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 036406 122 NYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 122 ~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
.|+.+|+.+|..|+.+...|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999988777654
No 34
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.79 E-value=34 Score=21.41 Aligned_cols=20 Identities=45% Similarity=0.441 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 036406 124 VKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~~ 143 (241)
+++|+.+|++|-.++.+|..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHH
Confidence 56788888888777766643
No 35
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.69 E-value=18 Score=24.54 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036406 121 VNYVKYLEKKIKELGVKRDEL 141 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el 141 (241)
-.||..|+++|+.|+.....+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999776654
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=36.42 E-value=95 Score=23.44 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=27.7
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEE
Q 036406 187 EQELPLSKVLEVLLDEGLCVVNCVSTRVDERLLHTIQA 224 (241)
Q Consensus 187 ~~~~~Lsrvl~aLeelgLdVvsa~~S~~~~~vl~tI~a 224 (241)
+++|.+.+++.+|.+.|+.|....++..+++....|..
T Consensus 81 d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 81 NVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp SSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 58899999999999999999765444235555444433
No 37
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=35.86 E-value=39 Score=20.74 Aligned_cols=19 Identities=37% Similarity=0.240 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036406 124 VKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~ 142 (241)
+++|+.+|++|-.++.++.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4678888888877776664
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.59 E-value=57 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036406 117 MNEGVNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 117 l~eAI~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
+..||+-|.-||.++++|+.+...+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988776543
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.08 E-value=48 Score=22.43 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 036406 121 VNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
-.|+.+|+.+|+.|+.+...|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999988777754
No 40
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.07 E-value=54 Score=20.22 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 036406 124 VKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~~ 143 (241)
+.+|+.+|++|-.++.+|..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 56788888888888877754
No 41
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.99 E-value=51 Score=22.65 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 036406 121 VNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
-.|+.+|+.+|+.|+.+...|..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888887777654
No 42
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.68 E-value=60 Score=19.90 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 036406 124 VKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~~ 143 (241)
+++|+.+|++|-.++.++..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~ 21 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHH
Confidence 46788888888877776653
No 43
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.44 E-value=1.3e+02 Score=22.14 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHHhHHHHHccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036406 88 RQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 88 R~~mn~~f~~LrsLlP~~~~~~K~Si~~~l~eAI~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
|++..+.+..||.-+ -+-|..=++-|++||+.++.+..+..+++.
T Consensus 35 rqkekEqL~~LKkkl-----------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK-----------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667778888887654 344777777888888888888877777654
No 44
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.30 E-value=38 Score=21.16 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036406 124 VKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~ 142 (241)
+++|+.+|++|..++.+|.
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677777777777766654
No 45
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.63 E-value=22 Score=24.52 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036406 121 VNYVKYLEKKIKELGVKRDEL 141 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el 141 (241)
-.||..|+++|..||.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999766554
No 46
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.08 E-value=47 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 036406 121 VNYVKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el~ 142 (241)
-.|+..|+++|+.|+....++.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999998777654
No 47
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=26.84 E-value=1.2e+02 Score=22.26 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCcEEEEEEEeeeCCeEEEEEE
Q 036406 193 SKVLEVLLDEGLCVVNCVSTRVDERLLHTIQ 223 (241)
Q Consensus 193 srvl~aLeelgLdVvsa~~S~~~~~vl~tI~ 223 (241)
.-|+.-||..|..|+ +.|-++..+..++|
T Consensus 53 r~VLnKLE~~G~rVv--smtGvgqtlVWclh 81 (83)
T 1jg5_A 53 RIVLDKLECRGFRVL--SMTGVGQTLVWCLH 81 (83)
T ss_dssp HHHHHHHHHTTCEEE--EEEEETTEEEEEEE
T ss_pred HHHHHHHhccCeEEE--EEecCCceEEEEEe
Confidence 468999999999999 56788888888887
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.92 E-value=71 Score=21.40 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 036406 121 VNYVKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el~~ 143 (241)
-.|+.+|+.+++.|+.....|..
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888877766654
No 49
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.48 E-value=53 Score=20.25 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 036406 124 VKYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~~ 143 (241)
+++|+.+|++|-.++.+|..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~ 22 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLAN 22 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHH
Confidence 46788888888877766643
No 50
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.80 E-value=74 Score=18.08 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036406 117 MNEGVNYVKYLEKKIKE 133 (241)
Q Consensus 117 l~eAI~YIk~Lq~~v~~ 133 (241)
|-+|-+|+.+|.++++.
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67888999999887753
No 51
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.39 E-value=56 Score=20.05 Aligned_cols=19 Identities=37% Similarity=0.344 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 036406 125 KYLEKKIKELGVKRDELKR 143 (241)
Q Consensus 125 k~Lq~~v~~L~~~k~el~~ 143 (241)
.+|+.+|++|-.++.+|..
T Consensus 3 ~QLE~kVEeLl~~n~~Le~ 21 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLEN 21 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHH
Confidence 4677788887777766643
No 52
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=23.23 E-value=1.1e+02 Score=24.68 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEEE
Q 036406 187 EQELPLSKVLEVLLDEGLCVVNCVSTRVD--ERLLHTIQAE 225 (241)
Q Consensus 187 ~~~~~Lsrvl~aLeelgLdVvsa~~S~~~--~~vl~tI~ak 225 (241)
.++|.|.+|...+.+.|+.+.+.++.... +....+|.+.
T Consensus 12 NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 12 NESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp CCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 48899999999999999999998886543 5555666665
No 53
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.14 E-value=92 Score=19.16 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036406 124 VKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~ 142 (241)
+.+|+.+|++|-.++.++.
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 4677788887777776664
No 54
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.84 E-value=74 Score=22.04 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 036406 121 VNYVKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 121 I~YIk~Lq~~v~~L~~~k~el~ 142 (241)
-.|+..|+++++.||.....+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3699999999999998776663
No 55
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=22.31 E-value=1.2e+02 Score=26.11 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=28.1
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEeeeC-----CeEEEEEEEEecCC
Q 036406 187 EQELPLSKVLEVLLDEGLCVVNCVSTRVD-----ERLLHTIQAELNNV 229 (241)
Q Consensus 187 ~~~~~Lsrvl~aLeelgLdVvsa~~S~~~-----~~vl~tI~akv~~~ 229 (241)
+++++|++|+.+|-+++..+.+.+.+... +....+ .++.+.
T Consensus 13 DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~ 58 (223)
T 1y7p_A 13 NKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG 58 (223)
T ss_dssp CCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC
Confidence 58899999999999999999999998853 343333 666654
No 56
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.19 E-value=1.1e+02 Score=18.40 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036406 124 VKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~ 142 (241)
++.|+.-|++|+++.+.++
T Consensus 8 ~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555666665555543
No 57
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.84 E-value=1e+02 Score=18.96 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036406 124 VKYLEKKIKELGVKRDELK 142 (241)
Q Consensus 124 Ik~Lq~~v~~L~~~k~el~ 142 (241)
+++|+.+|++|-.++..+.
T Consensus 3 MnQledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNA 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4677777777777665553
No 58
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=20.51 E-value=2.4e+02 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=35.4
Q ss_pred EEEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEe
Q 036406 178 EIAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTR--VDERLLHTIQAEL 226 (241)
Q Consensus 178 eI~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~--~~~~vl~tI~akv 226 (241)
-+++.|. +++|...+|-..|-++|+.+++++.+. ..|.++-.+.+..
T Consensus 10 vLtv~c~--DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 58 (286)
T 3n0v_A 10 ILTADCP--SMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ 58 (286)
T ss_dssp EEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEEEeC--CCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec
Confidence 3455553 589999999999999999999998773 5566665555554
No 59
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=20.29 E-value=2.8e+02 Score=24.26 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=36.0
Q ss_pred EEEEeecCCCCCchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEec
Q 036406 178 EIAYSCGYLEQELPLSKVLEVLLDEGLCVVNCVSTR--VDERLLHTIQAELN 227 (241)
Q Consensus 178 eI~i~~~~~~~~~~Lsrvl~aLeelgLdVvsa~~S~--~~~~vl~tI~akv~ 227 (241)
-+++.| ++++|...+|-..|-++|+.++.++-.. ..|.++-.+.+...
T Consensus 12 vLtv~c--~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 61 (292)
T 3lou_A 12 VLTLSC--PSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT 61 (292)
T ss_dssp EEEEEE--ESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred EEEEEc--CCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc
Confidence 345555 3589999999999999999999998773 56666655555443
No 60
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=20.01 E-value=1.3e+02 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEE
Q 036406 187 EQELPLSKVLEVLLDEGLCVVNCVSTRV--DERLLHTIQAE 225 (241)
Q Consensus 187 ~~~~~Lsrvl~aLeelgLdVvsa~~S~~--~~~vl~tI~ak 225 (241)
.+++.|.+|...+.+.|+.+.+.++... .+..-.+|.+.
T Consensus 13 NrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 13 NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp CSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 4889999999999999999999888653 35566666665
Done!