BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036411
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 212/468 (45%), Gaps = 50/468 (10%)
Query: 57 KNLLELDLSSNNFEGHLPQ--CLNNLTHLKVLDISYNQLSGNFPSVLTN---LTSLEYLD 111
+L LDLS N+ G + L + + LK L++S N L +FP ++ L SLE LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 112 LSFIDFQGTFLINSLANHSKLEVLVLS-SGN----DMLQVKTENWLPTYPLKVLQLSHCH 166
LS G ++ + + E+ L+ SGN D+ + N L+ L +S +
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN------LEFLDVSSNN 211
Query: 167 LNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAK 226
+ FL L+ LD+S N+L G+F + + T L++L + +N F G +P LP
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLP--- 267
Query: 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY--------------- 271
L++L ++ N F+G++P+ L L LD+S N F G +P
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 272 ----------SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN 321
++ +M+ L LDLS N FSGELP S+ + SL TLDLS+NNF G + PN
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 322 FMN--LTHLSSLRLNNNHFSGKMADGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLL 379
L L L NN F+GK+ N LSG IP +G+ S L L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 380 LMSENYLQGSIPVQLGNLESLEFIDISENGXXXXXXXXXXXXXXKH-IYLHNNAINGLIP 438
+ N L+G IP +L +++LE + + N + I L NN + G IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 439 IAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
N F G IP ++ + +L +L L N G IP
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 174/372 (46%), Gaps = 16/372 (4%)
Query: 42 NKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVL 101
NKI G + NL LD+SSNNF +P L + + L+ LDIS N+LSG+F +
Sbjct: 188 NKISGDVD---VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI 243
Query: 102 TNLTSLEYLDLSFIDFQGT---FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLK 158
+ T L+ L++S F G + SL S E D L + L
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT------LT 297
Query: 159 VLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG 217
L LS H F L+ L LS N G P L GL+VL L N FSG
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 218 ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ-KLIYLDVSKNSFEGNIPYSISEM 276
LP L LD+S+NNFSG + NL + L L + N F G IP ++S
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
EL++L LS N SG +P S+ S L L L N G++ M + L +L L+ N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 337 HFSGKMADGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396
+G++ G NN+L+G+IP WIG L +L +S N G+IP +LG+
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 397 LESLEFIDISEN 408
SL ++D++ N
Sbjct: 537 CRSLIWLDLNTN 548
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 181/409 (44%), Gaps = 52/409 (12%)
Query: 67 NNFEGHLP-QCLNNLTHLKVLDISYNQLSGNFPSVLTNLT-SLEYLDLSFIDFQGTFLIN 124
NNF G LP L + LKVLD+S+N+ SG P LTNL+ SL LDLS +F G L N
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 125 SLAN-HSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN------SSFLLHQ 177
N + L+ L L N+ K +P +L HL+ N S L
Sbjct: 388 LCQNPKNTLQELYLQ--NNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR-LPNAKYDKLRHLDIS 236
L+ L L N L G P L+ T LE LIL N +G +P L N L + +S
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCT--NLNWISLS 498
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
N +G++P+ +G + L L +S NSF GNIP + + + LI LDL+ N F+G +P +
Sbjct: 499 NNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 297 IFSSCLSLETLDLSNNNFYGQLF---------------PNFMNLTHLSSLRLN------- 334
+F ++ ++ N G+ + N + + S +LN
Sbjct: 558 MFK-----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 335 ----NNHFSGKMADGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI 390
+ + G + N LSG IP IG+ L++L + N + GSI
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 391 PVQLGNLESLEFIDISENG-XXXXXXXXXXXXXXKHIYLHNNAINGLIP 438
P ++G+L L +D+S N I L NN ++G IP
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 134/488 (27%), Positives = 197/488 (40%), Gaps = 75/488 (15%)
Query: 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
L LD+S N G + ++ T LK+L+IS NQ G P + L SL+YL L+ F
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282
Query: 119 GT---FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS---- 171
G FL + + L++ SGN +P + L L+ N+
Sbjct: 283 GEIPDFLSGACDTLTGLDL----SGNHFYGA-----VPPFFGSCSLLESLALSSNNFSGE 333
Query: 172 ---SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG-ILPRLPNAKY 227
LL LK LDLS N+ G P L + L L L +N+FSG ILP L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
+ L+ L + N F+GK+P L +L+ L +S N G IP S+ + +L L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXX 347
GE+P+ + +LETL L N+ G++ N T+L+ + L+NN +G++
Sbjct: 453 MLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 348 XXXXXXXXXXXNNKLSGDIPHWIGNF-SVLWLLL-------------------MSENYLQ 387
NN SG+IP +G+ S++WL L ++ N++
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 388 GSIPVQL------------GNLESLEFIDISENGXXXXXXXXXXXXXXKHIYLHN----- 430
G V + GNL LEF I + H
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNL--LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 431 ------------NAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLRG 478
N ++G IP N G IP ++ +L L+ L L
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 479 NSLQGRIP 486
N L GRIP
Sbjct: 690 NKLDGRIP 697
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 132/304 (43%), Gaps = 29/304 (9%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYXXXXXXXXXXXXRYNKIEGSRTKQGICNLKNLLEL 62
S GSL +L+ L L N I +N + G G+ N NL +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWI 495
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
LS+N G +P+ + L +L +L +S N SGN P+ L + SL +LDL+ F GT
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
K+ + +G + +K + CH N LL ++
Sbjct: 556 AAMFKQSGKIAANFI-AGKRYVYIKNDG----------MKKECHGAGN---LLEFQGIRS 601
Query: 183 LDLSH----------NQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR-LPNAKYDKLR 231
L+ +++ G + NN + L + N SG +P+ + + Y L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY--LF 659
Query: 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG 291
L++ N+ SG +P+ +G + + L LD+S N +G IP ++S + L +DLS NN SG
Sbjct: 660 ILNLGHNDISGSIPDEVGDL-RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 292 ELPR 295
+P
Sbjct: 719 PIPE 722
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 141/315 (44%), Gaps = 33/315 (10%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
N L+ L LS N G +P L +L+ L+ L + N L G P L + +LE L L F
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 115 IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-LKVLQLSHCHLNVN-SS 172
D G + + L+N + L + LS N+ L + W+ L +L+LS+ + N +
Sbjct: 476 NDLTGE-IPSGLSNCTNLNWISLS--NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 173 FLLHQHHLKFLDLSHNQLVGNFPTWLLQNN--------TGLEVLILWNNSF------SGI 218
L L +LDL+ N G P + + + G + + N+ +G
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 219 LPRLPNAKYDKLRHL------DISTNNFSGKLP---ENLGIVFQKLIYLDVSKNSFEGNI 269
L + ++L L +I++ + G +N G +++LD+S N G I
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG----SMMFLDMSYNMLSGYI 648
Query: 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329
P I M L L+L N+ SG +P + L LDLS+N G++ LT L+
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 330 SLRLNNNHFSGKMAD 344
+ L+NN+ SG + +
Sbjct: 708 EIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 212/468 (45%), Gaps = 50/468 (10%)
Query: 57 KNLLELDLSSNNFEGHLPQ--CLNNLTHLKVLDISYNQLSGNFPSVLTN---LTSLEYLD 111
+L LDLS N+ G + L + + LK L++S N L +FP ++ L SLE LD
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 112 LSFIDFQGTFLINSLANHSKLEVLVLS-SGN----DMLQVKTENWLPTYPLKVLQLSHCH 166
LS G ++ + + E+ L+ SGN D+ + N L+ L +S +
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN------LEFLDVSSNN 208
Query: 167 LNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAK 226
+ FL L+ LD+S N+L G+F + + T L++L + +N F G +P LP
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLP--- 264
Query: 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY--------------- 271
L++L ++ N F+G++P+ L L LD+S N F G +P
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 272 ----------SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN 321
++ +M+ L LDLS N FSGELP S+ + SL TLDLS+NNF G + PN
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 322 FMN--LTHLSSLRLNNNHFSGKMADGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLL 379
L L L NN F+GK+ N LSG IP +G+ S L L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 380 LMSENYLQGSIPVQLGNLESLEFIDISENGXXXXXXXXXXXXXXKH-IYLHNNAINGLIP 438
+ N L+G IP +L +++LE + + N + I L NN + G IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 439 IAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
N F G IP ++ + +L +L L N G IP
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 174/372 (46%), Gaps = 16/372 (4%)
Query: 42 NKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVL 101
NKI G + NL LD+SSNNF +P L + + L+ LDIS N+LSG+F +
Sbjct: 185 NKISGDVD---VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI 240
Query: 102 TNLTSLEYLDLSFIDFQGT---FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLK 158
+ T L+ L++S F G + SL S E D L + L
Sbjct: 241 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT------LT 294
Query: 159 VLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG 217
L LS H F L+ L LS N G P L GL+VL L N FSG
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 218 ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ-KLIYLDVSKNSFEGNIPYSISEM 276
LP L LD+S+NNFSG + NL + L L + N F G IP ++S
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
EL++L LS N SG +P S+ S L L L N G++ M + L +L L+ N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 337 HFSGKMADGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396
+G++ G NN+L+G+IP WIG L +L +S N G+IP +LG+
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 397 LESLEFIDISEN 408
SL ++D++ N
Sbjct: 534 CRSLIWLDLNTN 545
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 181/409 (44%), Gaps = 52/409 (12%)
Query: 67 NNFEGHLP-QCLNNLTHLKVLDISYNQLSGNFPSVLTNLT-SLEYLDLSFIDFQGTFLIN 124
NNF G LP L + LKVLD+S+N+ SG P LTNL+ SL LDLS +F G L N
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 125 SLAN-HSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN------SSFLLHQ 177
N + L+ L L N+ K +P +L HL+ N S L
Sbjct: 385 LCQNPKNTLQELYLQ--NNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR-LPNAKYDKLRHLDIS 236
L+ L L N L G P L+ T LE LIL N +G +P L N L + +S
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCT--NLNWISLS 495
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
N +G++P+ +G + L L +S NSF GNIP + + + LI LDL+ N F+G +P +
Sbjct: 496 NNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 297 IFSSCLSLETLDLSNNNFYGQLF---------------PNFMNLTHLSSLRLN------- 334
+F ++ ++ N G+ + N + + S +LN
Sbjct: 555 MFK-----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 335 ----NNHFSGKMADGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI 390
+ + G + N LSG IP IG+ L++L + N + GSI
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 391 PVQLGNLESLEFIDISENG-XXXXXXXXXXXXXXKHIYLHNNAINGLIP 438
P ++G+L L +D+S N I L NN ++G IP
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 134/488 (27%), Positives = 197/488 (40%), Gaps = 75/488 (15%)
Query: 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
L LD+S N G + ++ T LK+L+IS NQ G P + L SL+YL L+ F
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 279
Query: 119 GT---FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS---- 171
G FL + + L++ SGN +P + L L+ N+
Sbjct: 280 GEIPDFLSGACDTLTGLDL----SGNHFYGA-----VPPFFGSCSLLESLALSSNNFSGE 330
Query: 172 ---SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG-ILPRLPNAKY 227
LL LK LDLS N+ G P L + L L L +N+FSG ILP L
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
+ L+ L + N F+GK+P L +L+ L +S N G IP S+ + +L L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXX 347
GE+P+ + +LETL L N+ G++ N T+L+ + L+NN +G++
Sbjct: 450 MLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 348 XXXXXXXXXXXNNKLSGDIPHWIGNF-SVLWLLL-------------------MSENYLQ 387
NN SG+IP +G+ S++WL L ++ N++
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 388 GSIPVQL------------GNLESLEFIDISENGXXXXXXXXXXXXXXKHIYLHN----- 430
G V + GNL LEF I + H
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNL--LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 431 ------------NAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLRG 478
N ++G IP N G IP ++ +L L+ L L
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 479 NSLQGRIP 486
N L GRIP
Sbjct: 687 NKLDGRIP 694
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 132/304 (43%), Gaps = 29/304 (9%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYXXXXXXXXXXXXRYNKIEGSRTKQGICNLKNLLEL 62
S GSL +L+ L L N I +N + G G+ N NL +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWI 492
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
LS+N G +P+ + L +L +L +S N SGN P+ L + SL +LDL+ F GT
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
K+ + +G + +K + CH N LL ++
Sbjct: 553 AAMFKQSGKIAANFI-AGKRYVYIKNDG----------MKKECHGAGN---LLEFQGIRS 598
Query: 183 LDLSH----------NQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR-LPNAKYDKLR 231
L+ +++ G + NN + L + N SG +P+ + + Y L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY--LF 656
Query: 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG 291
L++ N+ SG +P+ +G + + L LD+S N +G IP ++S + L +DLS NN SG
Sbjct: 657 ILNLGHNDISGSIPDEVGDL-RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 292 ELPR 295
+P
Sbjct: 716 PIPE 719
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 142/317 (44%), Gaps = 33/317 (10%)
Query: 53 ICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
+ N L+ L LS N G +P L +L+ L+ L + N L G P L + +LE L L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 113 SFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-LKVLQLSHCHLNVN- 170
F D G + + L+N + L + LS N+ L + W+ L +L+LS+ + N
Sbjct: 471 DFNDLTGE-IPSGLSNCTNLNWISLS--NNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 171 SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNN--------TGLEVLILWNNSF------S 216
+ L L +LDL+ N G P + + + G + + N+ +
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 217 GILPRLPNAKYDKLRHL------DISTNNFSGKLP---ENLGIVFQKLIYLDVSKNSFEG 267
G L + ++L L +I++ + G +N G +++LD+S N G
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG----SMMFLDMSYNMLSG 643
Query: 268 NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTH 327
IP I M L L+L N+ SG +P + L LDLS+N G++ LT
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 328 LSSLRLNNNHFSGKMAD 344
L+ + L+NN+ SG + +
Sbjct: 703 LTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 103/254 (40%), Gaps = 60/254 (23%)
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297
NN G +P + + Q L YL ++ + G IP +S++K L+TLD S N SG LP SI
Sbjct: 87 NNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXXXXXXXXXXXX 357
S PN + +T F G
Sbjct: 146 SS-------------------LPNLVGIT-----------FDG----------------- 158
Query: 358 XNNKLSGDIPHWIGNFSVLWL-LLMSENYLQGSIPVQLGNLESLEFIDISENGXXXXXXX 416
N++SG IP G+FS L+ + +S N L G IP NL L F+D+S N
Sbjct: 159 --NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215
Query: 417 X-XXXXXXKHIYLHNNAIN---GLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLH 472
+ I+L N++ G + ++ N+ +G +P + +L LH
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 473 FLLLRGNSLQGRIP 486
L + N+L G IP
Sbjct: 272 SLNVSFNNLCGEIP 285
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271
NN I P + AK +L +L I+ N SG +P+ L + + L+ LD S N+ G +P
Sbjct: 87 NNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPP 143
Query: 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331
SIS + L+ + N SG +P S S ++ +S N G++ P F NL +L+ +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202
Query: 332 RLNNNHFSGKMA-----------------------DGXXXXXXXXXXXXXNNKLSGDIPH 368
L+ N G + NN++ G +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 369 WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408
+ L L +S N L G IP Q GNL+ + + N
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 21/245 (8%)
Query: 110 LDLSFIDFQGTFLI-NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSH---C 165
LDLS ++ + I +SLAN L L + N+++ +P K+ QL +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-----GPIPPAIAKLTQLHYLYIT 109
Query: 166 HLNVNSS---FLLHQHHLKFLDLSHNQLVGNFPTWL--LQNNTGLEVLILWNNSFSGILP 220
H NV+ + FL L LD S+N L G P + L N G+ N SG +P
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT---FDGNRISGAIP 166
Query: 221 RLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELI 280
+ + IS N +GK+P + L ++D+S+N EG+ K
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
+ L++N+ + +L + S +L LDL NN YG L L L SL ++ N+ G
Sbjct: 225 KIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 341 KMADG 345
++ G
Sbjct: 283 EIPQG 287
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 35/232 (15%)
Query: 67 NNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL--IN 124
NN G +P + LT L L I++ +SG P L+ + +L LD S+ GT I+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL-KVLQLSHCHLNVNSSFLLHQHHLKFL 183
SL N V + GN + +++ L + +S L +L F+
Sbjct: 147 SLPNL----VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 184 DLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGK 243
DLS N L G+ + L ++ + + L NS + L ++ +K N +G
Sbjct: 203 DLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK------------NLNG- 248
Query: 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR 295
LD+ N G +P ++++K L +L++S NN GE+P+
Sbjct: 249 --------------LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP 98
KNL LDL +N G LPQ L L L L++S+N L G P
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 390 IPVQLGNLESLEFIDIS--ENGXXXXXXXXXXXXXXKHIYLHNNAINGLIPIAXXXXXXX 447
IP L NL L F+ I N ++Y+ + ++G IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 448 XXXXXXXNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
N G +P I+ L NL + GN + G IP+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 109/246 (44%), Gaps = 51/246 (20%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLN----NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLD 111
L+NL +LDLS ++ E C N NL HL+ L++SYN+ G LE LD
Sbjct: 348 LENLQKLDLSHSDIEA--SDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLD 405
Query: 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS 171
++F ++ A HS + L L L+VL LSHC L+ ++
Sbjct: 406 VAFTH------LHVKAPHSPFQNLHL-------------------LRVLNLSHCLLDTSN 440
Query: 172 SFLLHQHHLKFLDLSHNQLVGN-------FPTWLLQNNTGLEVLILWNNSFSGILPRLPN 224
LL DL H L GN T LLQ LE+LIL S L +
Sbjct: 441 QHLL----AGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILS----SCNLLSIDQ 492
Query: 225 AKYDKLR---HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELIT 281
+ LR HLD+S N+ +G + L + K +YL+++ N+ P+ + + +
Sbjct: 493 QAFHGLRNVNHLDLSHNSLTGDSMDALSHL--KGLYLNMASNNIRIIPPHLLPALSQQSI 550
Query: 282 LDLSRN 287
++LS N
Sbjct: 551 INLSHN 556
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLS 113
NL++L L+LS N G Q L++LD+++ L P S NL L L+LS
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 114 --FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH-LNVN 170
+D L+ L + L L +S D KT L++L LS C+ L+++
Sbjct: 433 HCLLDTSNQHLLAGLQDLRHLN-LQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID 491
Query: 171 SSFLLHQHHLKFLDLSHNQLVGN 193
++ LDLSHN L G+
Sbjct: 492 QQAFHGLRNVNHLDLSHNSLTGD 514
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 30/168 (17%)
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN-AKYDKLRHLDISTN 238
L+FLDLS N L +F Q++ G L + SF+G++ N ++L HLD +
Sbjct: 349 LEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 239 NFSGKLPENLGIVFQKLIYLDVSK------------------------NSFEGN-IPYSI 273
N ++ + + LIYLD+S NSF+ N +P
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG-QLFP 320
+E++ L LDLS+ +L + F+S SL+ L++S+NNF+ FP
Sbjct: 467 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 108/261 (41%), Gaps = 45/261 (17%)
Query: 80 LTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF--IDFQGTFLINSLANHSKLEVLVL 137
L LK L + N+ F V +L SLE+LDLS + F+G + S L+ L L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDL 380
Query: 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF--LLHQHHLKFLDLSHNQLVGNFP 195
S + + N+L L+ L H +L S F L +L +LD+SH
Sbjct: 381 SFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------ 432
Query: 196 TWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKL 255
+ +N F+G+ L L ++ N+F ++ + L
Sbjct: 433 -----------TRVAFNGIFNGL---------SSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY 315
+LD+S+ E P + + + L L++S NNF L + SL+ LD S N+
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM 531
Query: 316 G------QLFPN---FMNLTH 327
Q FP+ F+NLT
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQ 552
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 52 GICN-LKNLLELDLSSNNF-EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEY 109
GI N L +L L ++ N+F E LP L +L LD+S QL P+ +L+SL+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 110 LDLS 113
L++S
Sbjct: 499 LNMS 502
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138
+L +L LDIS+ F + L+SLE L ++ FQ FL + L L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL--- 475
Query: 139 SGNDMLQVKTENWLPTY-----PLKVLQLSH 164
D+ Q + E PT L+VL +SH
Sbjct: 476 ---DLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN-AKYDKLRHLDISTN 238
L+FLDLS N L +F Q++ G L + SF+G++ N ++L HLD +
Sbjct: 373 LEFLDLSRNGL--SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430
Query: 239 NFSGKLPENLGIVFQKLIYLDVSK------------------------NSFEGN-IPYSI 273
N ++ + + LIYLD+S NSF+ N +P
Sbjct: 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490
Query: 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG-QLFPNFMNLTHLSSLR 332
+E++ L LDLS+ +L + F+S SL+ L++S+NNF+ FP + L L L
Sbjct: 491 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLD 548
Query: 333 LNNNH 337
+ NH
Sbjct: 549 YSLNH 553
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 45/261 (17%)
Query: 80 LTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF--IDFQGTFLINSLANHSKLEVLVL 137
L LK L + N+ F V +L SLE+LDLS + F+G S ++ + + L
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCC---SQSDFGTISLKYL 402
Query: 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF--LLHQHHLKFLDLSHNQLVGNFP 195
+ + + N+L L+ L H +L S F L +L +LD+SH
Sbjct: 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------ 456
Query: 196 TWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKL 255
+ +N F+G+ L L ++ N+F ++ + L
Sbjct: 457 -----------TRVAFNGIFNGL---------SSLEVLKMAGNSFQENFLPDIFTELRNL 496
Query: 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY 315
+LD+S+ E P + + + L L++S NNF L + SL+ LD S N+
Sbjct: 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM 555
Query: 316 G------QLFPN---FMNLTH 327
Q FP+ F+NLT
Sbjct: 556 TSKKQELQHFPSSLAFLNLTQ 576
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 52 GICN-LKNLLELDLSSNNF-EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEY 109
GI N L +L L ++ N+F E LP L +L LD+S QL P+ +L+SL+
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 110 LDLS 113
L++S
Sbjct: 523 LNMS 526
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138
+L +L LDIS+ F + L+SLE L ++ FQ FL + L L
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL--- 499
Query: 139 SGNDMLQVKTENWLPTY-----PLKVLQLSH 164
D+ Q + E PT L+VL +SH
Sbjct: 500 ---DLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLN----NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
NL+NL ELDLS ++ E C N NL+HL+ L++SYN+ LE L
Sbjct: 348 NLENLRELDLSHDDIET--SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 111 DLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN 170
DL+F ++L+V S L + LKVL LSH L+++
Sbjct: 406 DLAF---------------TRLKVKDAQSPFQNLHL----------LKVLNLSHSLLDIS 440
Query: 171 SSFLLHQHHLKFLDLSHNQLVGN-FP------TWLLQNNTGLEVLILWNNSFSGILPRLP 223
S L L H L GN FP T LQ LE+L+L S I +
Sbjct: 441 SEQLFD----GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHA 495
Query: 224 NAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLD 283
+ H+D+S N + E L + K IYL+++ N +P + + + T++
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYLNLASNHISIILPSLLPILSQQRTIN 553
Query: 284 LSRN 287
L +N
Sbjct: 554 LRQN 557
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 23/224 (10%)
Query: 76 CLNNLTHLKVLDISYNQLSGNFPSV--LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLE 133
CL L +L+ LD+S+N + + L NL+ L+ L+LS + G + +LE
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-LQSQAFKECPQLE 400
Query: 134 VLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLD-LSHNQLVG 192
+L L+ + + + L+VL L++C L+ ++ QH L L L H L G
Sbjct: 401 LLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSN-----QHLLAGLPVLRHLNLKG 455
Query: 193 NF-------PTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD--KLRHLDISTNNFSGK 243
N T LLQ LEVLIL S G+L A + K+ H+D+S N+ +
Sbjct: 456 NHFQDGTITKTNLLQTVGSLEVLIL---SSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCD 512
Query: 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
++L + K IYL+++ NS P + + + T++LS N
Sbjct: 513 SIDSLSHL--KGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 41 YNKIEGSRTKQ-GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP- 98
+N IE S + NL +L L+LS N G Q L++LD+++ +L N P
Sbjct: 356 HNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ 415
Query: 99 SVLTNLTSLEYLDLS--FIDFQGTFLINSLANHSKLEVLVLSSGN---DMLQVKTENWLP 153
S NL L+ L+L+ F+D L+ L L + GN D KT
Sbjct: 416 SPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNL----KGNHFQDGTITKTNLLQT 471
Query: 154 TYPLKVLQLSHCH-LNVNSSFLLHQHHLKFLDLSHNQLVGN 193
L+VL LS C L+++ + +DLSHN L +
Sbjct: 472 VGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCD 512
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN-AKYDKLRHLDIST 237
L L LS N L +F Q++ G L + SF+G++ N ++L HLD
Sbjct: 53 QLTKLSLSSNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSK------------------------NSFEGN-IPYS 272
+N ++ + + LIYLD+S NSF+ N +P
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG-QLFP 320
+E++ L LDLS+ +L + F+S SL+ L++S+NNF+ FP
Sbjct: 171 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 101/246 (41%), Gaps = 60/246 (24%)
Query: 56 LKNLLELDLSSN--NFEGHLPQCLNNLTHLKVLDISYN---QLSGNFP------------ 98
L L +L LSSN +F+G Q T LK LD+S+N +S NF
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110
Query: 99 ---------SVLTNLTSLEYLDLSF----IDFQGTFLINSLANHSKLEVLVLSSGNDMLQ 145
SV +L +L YLD+S + F G F N L S LEVL + +GN
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGL---SSLEVLKM-AGNSF-- 162
Query: 146 VKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGL 205
EN+LP +L FLDLS QL PT + + L
Sbjct: 163 --QENFLP------------------DIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSL 201
Query: 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSF 265
+VL + +N+F L P + L+ LD S N+ + L L +L++++N F
Sbjct: 202 QVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Query: 266 EGNIPY 271
+
Sbjct: 261 ACTCEH 266
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 111/284 (39%), Gaps = 75/284 (26%)
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLS--GNFPSVLTNLTSLEYLDLSFIDFQ 118
L+L SN + + LT L L +S N LS G TSL+YLDLSF
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-- 89
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF--LLH 176
V+ +SS N+L L+ L H +L S F L
Sbjct: 90 ---------------VITMSS----------NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF-SGILPRLPNAKYDKLRHLDI 235
+L +LD+SH F + + LEVL + NSF LP + + +LR+L
Sbjct: 125 LRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNL-- 177
Query: 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG--EL 293
+LD+S+ E P + + + L L++S NNF
Sbjct: 178 --------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217
Query: 294 PRSIFSSCL-SLETLDLSNNNFYG------QLFPN---FMNLTH 327
P CL SL+ LD S N+ Q FP+ F+NLT
Sbjct: 218 PY----KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNF-PSVLTNLTSLEYLDLS 113
+L+NL+ LD+S + N L+ L+VL ++ N NF P + T L +L +LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 114 FIDFQ--GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVL 160
+ NSL S L+VL +S N L T+P K L
Sbjct: 184 QCQLEQLSPTAFNSL---SSLQVLNMSHNNFF-------SLDTFPYKCL 222
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 217 GILPRLPNAKYDKLRHLDI-STNNFSGKLPENLGIVFQKLIY-LDVSKNSFEGNIPYSIS 274
+ +LP A D R +++ + N+ + + + I L + N+ P+
Sbjct: 55 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334
+ L L L RN+ S LPR IF + L TL +SNNN F T L +L+L+
Sbjct: 115 NVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 335 NNHFS 339
+N +
Sbjct: 174 SNRLT 178
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329
P+ + L L L RN+ S LPR IF + L TL +SNNN F T L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 330 SLRLNNNHFS 339
+L+L++N +
Sbjct: 175 NLQLSSNRLT 184
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
L NL ELDLS N + + LT LK L + NQL V LTSL+Y+
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 53/145 (36%), Gaps = 32/145 (22%)
Query: 203 TGLEVLILWNNSFSGILPRLPNAKYDKLRHLD--ISTNNFSGKLPENLGIVFQKLIYLDV 260
T L LIL N L LPN +DKL +L + N LP+ + L YL++
Sbjct: 85 TNLTYLILTGNQ----LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFP 320
+ N + LP+ +F +L LDLS N
Sbjct: 141 AHNQLQS-------------------------LPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 321 NFMNLTHLSSLRLNNNHFSGKMADG 345
F LT L LRL N + DG
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDG 199
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFI 115
L NL EL L N + + LT+L L++++NQL V LT+L LDLS+
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 116 DFQ 118
Q
Sbjct: 168 QLQ 170
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
L NL L+L+ N + + LT+L LD+SYNQL V LT L+ L L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 36/237 (15%)
Query: 80 LTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF--IDFQGTFLINSLANHSKLEVLVL 137
L LK L + N+ F V +L SLE+LDLS + F+G + S L+ L L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDL 380
Query: 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF--LLHQHHLKFLDLSHNQLVGNFP 195
S + + N+L L+ L H +L S F L +L +LD+SH
Sbjct: 381 SFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------ 432
Query: 196 TWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKL 255
+ +N F+G+ L L ++ N+F ++ + L
Sbjct: 433 -----------TRVAFNGIFNGL---------SSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312
+LD+S+ E P + + + L L+++ N +P IF SL+ + L N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTN 528
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
L+NL LDLS E P N+L+ L+VL+++ NQL + LTSL+ +
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 52 GICN-LKNLLELDLSSNNF-EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEY 109
GI N L +L L ++ N+F E LP L +L LD+S QL P+ +L+SL+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 110 LDLS 113
L+++
Sbjct: 499 LNMA 502
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138
+L +L LDIS+ F + L+SLE L ++ FQ FL + L L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL--- 475
Query: 139 SGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWL 198
D+ Q + E QLS N SS L+ L+++ NQL + P +
Sbjct: 476 ---DLSQCQLE-----------QLSPTAFNSLSS-------LQVLNMASNQL-KSVPDGI 513
Query: 199 LQNNTGLEVLILWNNSFSGILPRL 222
T L+ + L N + PR+
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPRI 537
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 149/367 (40%), Gaps = 93/367 (25%)
Query: 53 ICNLKNLLELDLSSNNFEG-HLPQCLNNLTHLKVLDISYNQLS----------------- 94
I +LK L EL+++ N + LP+ +NLT+L+ LD+S N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 95 ---------------GNFPSV----LTNLTSLEYLDLSFIDFQG-------TFLINSLAN 128
G F + LT + + L++ QG ++ N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 129 HSKLEVLVLSSGNDMLQVKTEN----WLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLD 184
LE S+ + + E +L Y ++ L +C NV+S L+ + D
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 185 LSHN------QLV----GNFPTWLLQ--------NNTG-----------LEVLILWNN-- 213
S+N +LV G FPT L+ +N G LE L L N
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 214 SFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI 273
SF G + + L++LD+S N LG+ ++L +LD ++ + +S+
Sbjct: 360 SFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSV 416
Query: 274 S-EMKELITLDLS----RNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTH 327
++ LI LD+S R F+G IF+ SLE L ++ N+F P+ F L +
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 328 LSSLRLN 334
L+ L L+
Sbjct: 472 LTFLDLS 478
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 33/149 (22%)
Query: 169 VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD 228
V SF H L+FLDLS N +V + L N++ G P
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEY---------------LKNSACKGAWP-------- 387
Query: 229 KLRHLDISTNNF-SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
L+ L +S N+ S + + + + L LD+S+N+F +P S +++ L+LS
Sbjct: 388 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSST 446
Query: 288 NFSGELPRSIFSSCL--SLETLDLSNNNF 314
+ +C+ +LE LD+SNNN
Sbjct: 447 GI------RVVKTCIPQTLEVLDVSNNNL 469
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFS----GKLPENLGIVFQKLIYLDVSKNSFEG 267
+ SF+ I P+ ++ LD+S N + G L + Q LI N+ EG
Sbjct: 40 SRSFTSI----PSGLTAAMKSLDLSFNKITYIGHGDLRACANL--QVLILKSSRINTIEG 93
Query: 268 NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF----YGQLFPNFM 323
+ YS+ ++ L DLS N+ S L S F SL+ L+L N + LFPN
Sbjct: 94 DAFYSLGSLEHL---DLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-- 147
Query: 324 NLTHLSSLRLNN 335
LT+L +LR+ N
Sbjct: 148 -LTNLQTLRIGN 158
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 33/149 (22%)
Query: 169 VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD 228
V SF H L+FLDLS N +V + L N++ G P
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEY---------------LKNSACKGAWP-------- 361
Query: 229 KLRHLDISTNNF-SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
L+ L +S N+ S + + + + L LD+S+N+F +P S +++ L+LS
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSST 420
Query: 288 NFSGELPRSIFSSCL--SLETLDLSNNNF 314
+ +C+ +LE LD+SNNN
Sbjct: 421 GI------RVVKTCIPQTLEVLDVSNNNL 443
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFS----GKLPENLGIVFQKLIYLDVSKNSFEG 267
+ SF+ I P+ ++ LD+S N + G L + Q LI N+ EG
Sbjct: 14 SRSFTSI----PSGLTAAMKSLDLSFNKITYIGHGDLRACANL--QVLILKSSRINTIEG 67
Query: 268 NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF----YGQLFPNFM 323
+ YS+ ++ L DLS N+ S L S F SL+ L+L N + LFPN
Sbjct: 68 DAFYSLGSLEHL---DLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-- 121
Query: 324 NLTHLSSLRLNN 335
LT+L +LR+ N
Sbjct: 122 -LTNLQTLRIGN 132
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN-AKYDKLRHLDISTN 238
L +LDLS N L +F ++ G L + SF+G + N ++L+HLD +
Sbjct: 352 LSYLDLSRNAL--SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
+ + +KL+YLD+S + + + + L TL ++ N+F ++F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 299 SSCLSLETLDLS 310
++ +L LDLS
Sbjct: 470 ANTTNLTFLDLS 481
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138
+L L LDISY +F + LTSL L ++ F+ L N AN + L L LS
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481
Query: 139 SGNDMLQVKTENWLPTYPLKVLQLSHCH-LNVNSSFLLHQHHLKFLDLSHNQL 190
+ Q+ + + L++L +SH + L ++SS + L LD S N++
Sbjct: 482 KCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN-AKYDKLRHLDISTN 238
L +LDLS N L +F ++ G L + SF+G + N ++L+HLD +
Sbjct: 347 LSYLDLSRNAL--SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 404
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
+ + +KL+YLD+S + + + + L TL ++ N+F ++F
Sbjct: 405 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 464
Query: 299 SSCLSLETLDLS 310
++ +L LDLS
Sbjct: 465 ANTTNLTFLDLS 476
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138
+L L LDISY +F + LTSL L ++ F+ L N AN + L L LS
Sbjct: 417 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 476
Query: 139 SGNDMLQVKTENWLPTYPLKVLQLSHCH-LNVNSSFLLHQHHLKFLDLSHNQL 190
+ Q+ + + L++L +SH + L ++SS + L LD S N++
Sbjct: 477 KCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
L NL EL L N + P+ ++LT L L + YN+L V LTSL+ L L
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 36/210 (17%)
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQG- 119
+LDL SN + + LT L++L ++ N+L + L +LE L ++ Q
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 120 -TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQH 178
+ + L N ++L + N L + P +V
Sbjct: 101 PIGVFDQLVNLAELRL-------------DRNQLKSLPPRVFD--------------SLT 133
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST- 237
L +L L +N+L + P + T L+ L L+NN L R+P +DKL L
Sbjct: 134 KLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQ----LKRVPEGAFDKLTELKTLKL 188
Query: 238 -NNFSGKLPENLGIVFQKLIYLDVSKNSFE 266
NN ++PE +KL L + +N ++
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFI 115
LKNL L ++ N + + L +L L + NQL P V +LT L YL L +
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 116 DFQ 118
+ Q
Sbjct: 144 ELQ 146
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
+D S+ + +P N+ +KL D+ N + + +L L L+ N
Sbjct: 21 VDCSSKKLTA-IPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-T 75
Query: 293 LPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
LP IF +LETL +++N F L +L+ LRL+ N
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRN 287
KLR L ++ N LP + + L L V+ N + +P + ++ L L L RN
Sbjct: 62 KLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRN 119
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFS 339
LP +F S L L L N Q P F LT L LRL NN
Sbjct: 120 QLKS-LPPRVFDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLK 170
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 46 GSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLT 105
G T +G+ L NL+ L+L N P L NLT + L++S N L S + L
Sbjct: 52 GVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQ 107
Query: 106 SLEYLDLSFIDFQGTFLINSLANHSKLEVLVL 137
S++ LDL+ + LA S L+VL L
Sbjct: 108 SIKTLDLTSTQITD---VTPLAGLSNLQVLYL 136
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 46 GSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLT 105
G T +GI L NL+ L+L N P L NLT + L++S N L S + L
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKN--VSAIAGLQ 113
Query: 106 SLEYLDLSFIDFQGTFLINSLANHSKLEVLVL 137
S++ LDL+ + LA S L+VL L
Sbjct: 114 SIKTLDLTSTQITD---VTPLAGLSNLQVLYL 142
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 121/280 (43%), Gaps = 31/280 (11%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS---- 113
+L EL+L+ N P NNL +L+ L + N+L V T L++L LD+S
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 114 --FID--FQGTFLINSL---------------ANHSKLEVLVLSSGNDMLQVKTENWLPT 154
+D FQ + + SL + + LE L L N + + TE
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL 175
Query: 155 YPLKVLQLSHCHLNVNSSFLLHQ-HHLKFLDLSHNQLVGNF-PTWLLQNNTGLEVLILWN 212
+ L VL+L H ++N + + + LK L++SH + P L N L L + +
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--LTSLSITH 233
Query: 213 NSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYS 272
+ + + P L LR L++S N S + ++ +L + + PY+
Sbjct: 234 CNLTAV-PYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291
Query: 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312
+ L L++S N + L S+F S +LETL L +N
Sbjct: 292 FRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
IS++ G+LP L+ L++ +N G P + + L L N E+
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338
+F L+TL+L +N + +F +L L+SL L +N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313
KL +L++ N + ++ EL TL L+ N + LP +F L+ L L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ 118
Query: 314 FYGQLFPNFMNLTHLSSLRLNNNHF 338
F LT L LRLN N
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313
KL +L++ N + ++ EL TL L+ N + LP +F L+ L L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ 118
Query: 314 FYGQLFPNFMNLTHLSSLRLNNNHF 338
F LT L LRLN N
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 32/145 (22%)
Query: 203 TGLEVLILWNNSFSGILPRLPNAKYDKLRHLD--ISTNNFSGKLPENLGIVFQKLIYLDV 260
T L LIL N L LPN +DKL +L + N LP+ + L YL +
Sbjct: 85 TNLTYLILTGNQ----LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFP 320
N + LP+ +F +L LDL NN
Sbjct: 141 YHNQLQS-------------------------LPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 321 NFMNLTHLSSLRLNNNHFSGKMADG 345
F LT L L LN+N + DG
Sbjct: 176 VFDKLTQLKQLSLNDNQLKS-VPDG 199
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
L NL LDL +N + + LT LK L ++ NQL V LTSL ++
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 52 GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
+ L +L +L+ SSN P L NLT L+ LDIS N++S SVL LT+LE L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 200
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 52 GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
+ L +L +L SSN P L NLT L+ LDIS N++S SVL LT+LE L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 200
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 52 GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
+ L +L +L SSN P L NLT L+ LDIS N++S SVL LT+LE L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 200
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
N K+L +DLS+N Q +N+T L L +SYN+L P L SL L L
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGN 141
L+ LD+S+N+L + SL +LDLSF DF + N +KL L LS+
Sbjct: 102 LEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 225 AKYDKLRHLDISTNNFSGKLPENLGIVFQ-KLIYLDVSKNSFEGNIPYSISEMKELITLD 283
+K HLD S N + + EN G + + + + L +++ I ++MK L LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLF 319
+S+N+ S + + S SL +L++S+N +F
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 20/107 (18%)
Query: 209 ILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN 268
I +N+ LP LP + L L++ +N+ LPE + Q L +LDVS+N F G
Sbjct: 242 IYADNNLLKTLPDLPPS----LEALNVR-DNYLTDLPE----LPQSLTFLDVSENIFSG- 291
Query: 269 IPYSISEMKE-LITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF 314
+SE+ L L+ S N RS+ SLE L++SNN
Sbjct: 292 ----LSELPPNLYYLNASSNEI-----RSLCDLPPSLEELNVSNNKL 329
>pdb|3GWJ|A Chain A, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|B Chain B, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|C Chain C, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|D Chain D, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|E Chain E, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|F Chain F, Crystal Structure Of Antheraea Pernyi Arylphorin
Length = 674
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSK-NSFEGNIPYSISEMK-ELITLDL 284
Y+K+R LD N F L + + F + IYL+ SK NSF GN +++ E +T D
Sbjct: 305 YEKIRFLDAYENYFVQALQKGVFEGFGQTIYLNDSKANSFVGNYWQDNADLYGEEVTKDY 364
Query: 285 SRN 287
R+
Sbjct: 365 QRS 367
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 118/286 (41%), Gaps = 49/286 (17%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
NL +LDLS NN + L L+ L + YN + P L++L YL L
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFT 308
Query: 118 QGTFLINSLANHSKLEVLVLS----------SGNDMLQVKTENWLPTYPLKVLQLSHCHL 167
+ + SLA+H ++ N++ K+ + LK L LS
Sbjct: 309 KQSV---SLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFT 365
Query: 168 NV----NSSFLLHQHH-LKFLDLSHNQLV----GNFPTWLLQNNTGLEVLILWNNSFSGI 218
++ N +F+ H L L+L+ N + G F +WL Q L +L L + I
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF-SWLGQ----LRILDL---GLNEI 417
Query: 219 LPRLPNAKYDKLR-----------HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG 267
+L ++ LR +L +ST++F+ L Q+L+ V+ + +
Sbjct: 418 EQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFA------LVPSLQRLMLRRVALKNVDI 471
Query: 268 NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313
+ P ++ L LDLS NN + + + +LE LD +NN
Sbjct: 472 S-PSPFRPLRNLTILDLSNNNIAN-INEDLLEGLENLEILDFQHNN 515
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 52 GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQL-SGNFPSVLTNLTSLEYL 110
G+ +L+ L+ L+ + + E + P + +L LK L++++N + S P +NLT+LE+L
Sbjct: 100 GLSSLQKLVALETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 111 DLSFIDFQGTFLIN 124
DLS Q + +
Sbjct: 157 DLSSNKIQSIYCTD 170
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 72 HLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
LP + NL++L+VLD+S+N+L+ + P+ L + L+Y
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 243 KLPENLGIV----FQKLIYLDVSK--NS--FEGNIPYSISEMKELITLDLSRNNFSGELP 294
KLP NL I+ F + I L+ + NS + G+ S + +K +I D +F+ EL
Sbjct: 191 KLPRNLKIIRDYCFAECILLENXEFPNSLYYLGDFALSKTGVKNIIIPD----SFT-ELG 245
Query: 295 RSIFSSCLSLETLDLSNNNFY--GQLFPNFMNLTHL 328
+S+F C LE++ + NN G LF N L +
Sbjct: 246 KSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKV 281
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 222 LPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELI 280
+P + +LD+ TN+ LP + L L + N + ++P + +++ L
Sbjct: 22 VPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLT 79
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHF 338
L+LS N LP +F L+ L L+ N Q P+ F LT L LRL N
Sbjct: 80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL--QSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 339 SGKMADG 345
+ DG
Sbjct: 137 K-SVPDG 142
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
L L EL L++N + + LT LK L + NQL V LTSL+Y+
Sbjct: 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335
+ L+ L+LS+N F G + +F + LE LDLS N+ +F+ L +L L L+
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 336 NHFSGKMADG 345
N + DG
Sbjct: 381 NQLKS-VPDG 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,203,423
Number of Sequences: 62578
Number of extensions: 511908
Number of successful extensions: 1746
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 380
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)