Query 036411
Match_columns 487
No_of_seqs 206 out of 2535
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 12:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.7E-47 3.6E-52 404.3 31.5 476 3-487 88-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.9E-47 4.1E-52 403.9 31.8 473 7-487 68-565 (968)
3 KOG4194 Membrane glycoprotein 100.0 5E-36 1.1E-40 271.5 8.2 365 59-479 80-449 (873)
4 KOG4194 Membrane glycoprotein 100.0 9E-35 1.9E-39 263.4 9.5 322 162-487 109-434 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.7E-34 5.9E-39 249.0 -9.8 459 4-482 64-541 (565)
6 KOG0618 Serine/threonine phosp 100.0 8.2E-31 1.8E-35 250.0 -3.5 447 10-479 23-510 (1081)
7 KOG0618 Serine/threonine phosp 100.0 2.8E-30 6.1E-35 246.4 -3.3 432 5-456 42-511 (1081)
8 KOG0444 Cytoskeletal regulator 99.9 4.1E-30 8.9E-35 235.4 -2.4 368 81-486 7-379 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 2.9E-29 6.2E-34 229.9 -2.0 365 32-456 7-373 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 1E-30 2.2E-35 226.9 -11.3 456 11-487 48-523 (565)
11 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3E-26 207.5 28.5 308 58-385 590-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 4E-21 8.6E-26 204.0 25.7 343 124-483 552-907 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.7E-25 1.4E-29 190.5 -6.3 413 33-479 68-498 (498)
14 KOG4237 Extracellular matrix p 99.8 1.5E-22 3.3E-27 176.0 -2.6 375 58-482 68-477 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.4E-18 3E-23 171.7 16.4 260 180-486 203-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.8E-17 3.8E-22 164.0 15.9 265 157-467 203-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 6.4E-17 1.4E-21 161.0 14.4 119 351-481 305-427 (754)
18 cd00116 LRR_RI Leucine-rich re 99.7 5.7E-18 1.2E-22 157.0 5.9 273 208-481 3-319 (319)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-18 4.6E-23 159.8 2.7 275 182-457 2-319 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 1.1E-16 2.4E-21 159.3 11.7 245 157-434 180-428 (754)
21 KOG0617 Ras suppressor protein 99.5 4.5E-16 9.8E-21 120.3 -4.4 178 301-483 32-213 (264)
22 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.7E-19 112.5 -3.5 157 253-415 33-190 (264)
23 KOG1909 Ran GTPase-activating 99.3 1.9E-12 4.2E-17 112.0 3.0 135 347-481 154-310 (382)
24 KOG3207 Beta-tubulin folding c 99.2 4.2E-12 9.1E-17 113.2 1.8 212 29-241 118-339 (505)
25 KOG1259 Nischarin, modulator o 99.2 1.1E-11 2.5E-16 105.1 4.0 225 252-485 181-415 (490)
26 KOG3207 Beta-tubulin folding c 99.2 7.7E-12 1.7E-16 111.5 1.7 206 156-362 122-338 (505)
27 PF14580 LRR_9: Leucine-rich r 99.1 8.1E-11 1.8E-15 95.6 6.3 126 347-476 16-147 (175)
28 PF14580 LRR_9: Leucine-rich r 99.1 9.7E-11 2.1E-15 95.2 6.0 129 6-140 17-150 (175)
29 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.5E-16 107.4 0.5 185 273-457 88-310 (382)
30 KOG0532 Leucine-rich repeat (L 99.1 4.5E-12 9.7E-17 116.7 -4.0 172 277-457 75-246 (722)
31 COG4886 Leucine-rich repeat (L 99.0 7E-10 1.5E-14 105.8 7.2 197 257-462 97-294 (394)
32 COG4886 Leucine-rich repeat (L 99.0 6.9E-10 1.5E-14 105.8 6.9 200 232-441 97-297 (394)
33 PF13855 LRR_8: Leucine rich r 99.0 3.2E-10 6.9E-15 75.7 3.3 61 421-481 1-61 (61)
34 KOG1259 Nischarin, modulator o 99.0 2.2E-10 4.8E-15 97.4 1.8 127 326-457 284-411 (490)
35 KOG2120 SCF ubiquitin ligase, 98.9 4.6E-11 1E-15 101.3 -2.6 157 58-214 186-349 (419)
36 KOG4341 F-box protein containi 98.9 3.5E-11 7.6E-16 106.8 -3.6 37 349-385 400-437 (483)
37 KOG4341 F-box protein containi 98.9 3.8E-11 8.3E-16 106.6 -4.9 301 58-380 139-458 (483)
38 KOG4658 Apoptotic ATPase [Sign 98.9 9.5E-10 2.1E-14 112.2 4.3 271 8-288 523-805 (889)
39 PLN03150 hypothetical protein; 98.8 1.4E-08 3.1E-13 101.4 8.7 108 376-483 420-529 (623)
40 KOG4658 Apoptotic ATPase [Sign 98.8 9.7E-09 2.1E-13 104.9 6.0 204 29-241 520-730 (889)
41 KOG2120 SCF ubiquitin ligase, 98.8 7.3E-10 1.6E-14 94.2 -1.7 198 8-207 185-391 (419)
42 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.6E-14 101.0 -2.1 149 254-411 99-247 (722)
43 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.9E-13 67.8 3.3 60 32-92 1-60 (61)
44 KOG0531 Protein phosphatase 1, 98.7 2.6E-09 5.7E-14 101.9 -0.9 219 253-484 95-320 (414)
45 KOG1859 Leucine-rich repeat pr 98.6 2.7E-09 5.9E-14 101.6 -3.0 128 350-483 164-293 (1096)
46 PLN03150 hypothetical protein; 98.6 1.3E-07 2.8E-12 94.6 8.5 106 304-409 420-526 (623)
47 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.5E-13 97.5 -1.9 217 252-482 71-290 (414)
48 KOG2982 Uncharacterized conser 98.5 3.4E-08 7.4E-13 84.2 0.3 112 29-140 42-156 (418)
49 KOG2982 Uncharacterized conser 98.4 7.8E-08 1.7E-12 82.1 0.3 220 254-475 46-285 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.3 3.1E-07 6.7E-12 77.5 2.3 86 155-240 185-284 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.3 6.1E-07 1.3E-11 75.8 3.8 184 299-482 89-316 (388)
52 KOG1859 Leucine-rich repeat pr 98.2 1.2E-07 2.5E-12 90.8 -3.6 127 326-457 164-291 (1096)
53 KOG3665 ZYG-1-like serine/thre 98.1 8.9E-07 1.9E-11 88.5 2.1 152 8-161 122-281 (699)
54 KOG3665 ZYG-1-like serine/thre 98.1 7.7E-07 1.7E-11 88.9 1.3 37 176-212 248-284 (699)
55 PF13306 LRR_5: Leucine rich r 98.1 7.5E-06 1.6E-10 64.4 6.1 82 273-358 8-89 (129)
56 PF13306 LRR_5: Leucine rich r 98.1 1.1E-05 2.4E-10 63.4 6.4 124 344-472 6-129 (129)
57 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.2E-10 64.6 5.3 85 394-478 60-149 (233)
58 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4.1E-10 64.0 5.3 107 251-360 40-150 (233)
59 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.5E-11 66.1 -1.7 106 330-436 31-138 (177)
60 KOG1947 Leucine rich repeat pr 97.8 5.4E-06 1.2E-10 81.7 0.5 226 30-266 186-440 (482)
61 PF12799 LRR_4: Leucine Rich r 97.8 3.4E-05 7.3E-10 46.8 3.4 36 58-94 2-37 (44)
62 KOG1947 Leucine rich repeat pr 97.7 7.9E-06 1.7E-10 80.6 0.6 248 32-290 161-440 (482)
63 PRK15386 type III secretion pr 97.7 0.00016 3.4E-09 66.9 8.6 138 299-456 49-188 (426)
64 PF12799 LRR_4: Leucine Rich r 97.7 4.4E-05 9.6E-10 46.3 3.1 36 422-458 2-37 (44)
65 KOG4579 Leucine-rich repeat (L 97.7 2.5E-06 5.3E-11 64.4 -2.9 107 254-363 28-136 (177)
66 PRK15386 type III secretion pr 97.6 0.0004 8.8E-09 64.2 9.8 54 227-287 51-104 (426)
67 KOG2739 Leucine-rich acidic nu 97.5 8E-05 1.7E-09 63.2 2.6 111 25-138 36-151 (260)
68 KOG2123 Uncharacterized conser 97.4 6.3E-06 1.4E-10 70.1 -3.9 102 31-137 18-124 (388)
69 KOG2123 Uncharacterized conser 97.4 6.5E-06 1.4E-10 70.0 -4.3 103 6-113 17-125 (388)
70 KOG2739 Leucine-rich acidic nu 97.0 0.00047 1E-08 58.7 2.7 109 366-476 35-150 (260)
71 KOG3864 Uncharacterized conser 95.4 0.0024 5.2E-08 52.2 -1.3 83 32-115 101-186 (221)
72 KOG3864 Uncharacterized conser 95.2 0.0029 6.2E-08 51.8 -1.6 80 304-383 103-185 (221)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.01 2.2E-07 29.7 0.5 12 447-458 2-13 (22)
74 PF13504 LRR_7: Leucine rich r 94.4 0.024 5.2E-07 26.2 1.1 17 469-486 1-17 (17)
75 PF00560 LRR_1: Leucine Rich R 94.3 0.017 3.6E-07 28.9 0.5 17 470-487 1-17 (22)
76 KOG4308 LRR-containing protein 93.8 0.00037 8E-09 67.0 -11.2 180 279-458 89-303 (478)
77 KOG4308 LRR-containing protein 92.2 0.002 4.4E-08 62.0 -8.7 203 255-457 89-330 (478)
78 PF13516 LRR_6: Leucine Rich r 89.9 0.051 1.1E-06 27.8 -1.0 12 446-457 3-14 (24)
79 smart00369 LRR_TYP Leucine-ric 89.5 0.34 7.4E-06 25.2 2.0 22 277-299 2-23 (26)
80 smart00370 LRR Leucine-rich re 89.5 0.34 7.4E-06 25.2 2.0 22 277-299 2-23 (26)
81 smart00369 LRR_TYP Leucine-ric 87.9 0.46 9.9E-06 24.7 1.8 15 422-436 3-17 (26)
82 smart00370 LRR Leucine-rich re 87.9 0.46 9.9E-06 24.7 1.8 15 422-436 3-17 (26)
83 smart00364 LRR_BAC Leucine-ric 85.1 0.61 1.3E-05 24.2 1.3 13 470-482 3-15 (26)
84 smart00365 LRR_SD22 Leucine-ri 73.9 2.6 5.6E-05 22.0 1.5 14 469-482 2-15 (26)
85 KOG0473 Leucine-rich repeat pr 73.3 0.16 3.5E-06 42.8 -4.8 84 349-434 41-124 (326)
86 smart00367 LRR_CC Leucine-rich 71.1 2.9 6.3E-05 21.6 1.3 13 468-480 1-13 (26)
87 smart00368 LRR_RI Leucine rich 68.2 3.9 8.5E-05 21.7 1.5 13 469-481 2-14 (28)
88 KOG0473 Leucine-rich repeat pr 65.4 0.36 7.8E-06 40.9 -4.3 84 396-481 40-123 (326)
89 KOG3763 mRNA export factor TAP 57.9 6.9 0.00015 38.0 2.0 62 395-458 215-283 (585)
90 KOG3763 mRNA export factor TAP 42.3 9.1 0.0002 37.2 0.2 85 371-457 215-311 (585)
91 KOG4242 Predicted myosin-I-bin 35.6 1.7E+02 0.0037 28.4 7.2 17 31-47 164-180 (553)
92 PF05725 FNIP: FNIP Repeat; I 23.2 1E+02 0.0022 18.3 2.5 7 422-428 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-47 Score=404.29 Aligned_cols=476 Identities=31% Similarity=0.439 Sum_probs=317.4
Q ss_pred cccccccccEEecCCccccccccccc-cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
+|..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..+ ...+++|++|++++|.+....|..+.+++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCC
Confidence 46788899999999988876666544 478888888888888764433 24567777777777777666677777777
Q ss_pred CccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceee
Q 036411 82 HLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQ 161 (487)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 161 (487)
+|++|++++|.+....|..+.++++|++|++++|.+.+. .+..+..+++|+.++++.+.... ..+..+..+++|++|+
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCC-cCChhHhcCCCCCEEE
Confidence 777777777776666666777777777777777766533 33456667777777765543222 2223345556666666
Q ss_pred cccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcc
Q 036411 162 LSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240 (487)
Q Consensus 162 l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (487)
+.+|.+ ...+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+....+. .+..+++|+.|++.+|.+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCcc
Confidence 666665 3455556666666666666666654444443 2556666666666655433332 224455556666655555
Q ss_pred cccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchh-----------------------h
Q 036411 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS-----------------------I 297 (487)
Q Consensus 241 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------~ 297 (487)
.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.. .
T Consensus 321 ~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 321 TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred CCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 5444433322 345555555555555444444555555555555555444333322 1
Q ss_pred hcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccccccc
Q 036411 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377 (487)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 377 (487)
+..+++|+.|++.+|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~ 478 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLE 478 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccce
Confidence 3445566666666666555555555566666666666666655555555566667777777776665555544 346778
Q ss_pred EEecCCccccCcchhhhccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCc
Q 036411 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 378 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
.|++++|.+.+..|..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 8888888887777888888889999999999885 455667788999999999999998888889999999999999999
Q ss_pred ccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 457 FFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 457 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
+++.+|..+..+++|+.|++++|++.+.+|+
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9888999999999999999999999998884
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-47 Score=403.87 Aligned_cols=473 Identities=31% Similarity=0.440 Sum_probs=371.0
Q ss_pred cccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEE
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 86 (487)
..+++.|+++++.+.+..+..+..+++|+.|++++|.+.+..+.+.+.++++|++|++++|.+....|. ..+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999888888889999999999999999987666666677999999999999999766664 568999999
Q ss_pred eccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeeccccc
Q 036411 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH 166 (487)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (487)
++++|.+....|..+..+++|++|++++|.+.+. .+..+..+++|++|+++++.... ..+..+..+++|+.|++.+|.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCc
Confidence 9999999878889999999999999999987643 44578899999999998765433 334456778899999999998
Q ss_pred c-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCC
Q 036411 167 L-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP 245 (487)
Q Consensus 167 ~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 245 (487)
+ ...+..+..+++|+.|++++|.+.+..+.. +..+++|+.|.+++|.+....+. .+..+++|+.|++++|.+.+..|
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCC
Confidence 8 467778899999999999999998777665 45899999999999987755444 34678999999999999886766
Q ss_pred cccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCC
Q 036411 246 ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNL 325 (487)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 325 (487)
..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 302 ~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 302 ELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred hhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 6554 3589999999999998888888999999999999999998777765 5778999999999998876666666667
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
++|+.|++.+|.+.+..+..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 77777777777776666666666677777777777666666666666666666666666666555554445555555555
Q ss_pred cCC-----------------------ccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccC
Q 036411 406 SEN-----------------------GLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461 (487)
Q Consensus 406 ~~~-----------------------~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (487)
++| ++. ..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 554 443 22233445666777777777776666667777777777777777777777
Q ss_pred cccccccCceeEEeccCCccCCCCCC
Q 036411 462 PHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 462 ~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
|..+..+++|+.|++++|++.+.+|+
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCCh
Confidence 77777777777777777777777763
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5e-36 Score=271.47 Aligned_cols=365 Identities=24% Similarity=0.259 Sum_probs=269.2
Q ss_pred CcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEec
Q 036411 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138 (487)
Q Consensus 59 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 138 (487)
-+.|++++|.+.+.-+..|.++++|+++++.+|.++ .+|........|++|++.+|.+... -.+.++.+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv-~se~L~~l--------- 148 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSV-TSEELSAL--------- 148 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccc-cHHHHHhH---------
Confidence 345777777777666666777777777777777766 4555444455577777776665421 11222222
Q ss_pred cCCCccccccccccCCCCCceeecccccccccc-cccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCC
Q 036411 139 SGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS-SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG 217 (487)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (487)
+.|+.++++.|.++.++ ..+..-.++++|++++|.++ .
T Consensus 149 ----------------~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-------------------------~ 187 (873)
T KOG4194|consen 149 ----------------PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-------------------------T 187 (873)
T ss_pred ----------------hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-------------------------c
Confidence 23333333333332222 12333345555555555544 3
Q ss_pred CCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhh
Q 036411 218 ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297 (487)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 297 (487)
.... .+..+.+|..|.++.|.++ .+|...++.+++|+.|++..|.+...-...|.++++|+.|.+..|.+. .+..+.
T Consensus 188 l~~~-~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~ 264 (873)
T KOG4194|consen 188 LETG-HFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGA 264 (873)
T ss_pred cccc-cccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcc
Confidence 3222 3355556777777777776 666666666678888888888776433456888999999999999998 888888
Q ss_pred hcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccccccc
Q 036411 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377 (487)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 377 (487)
|-.+.++++|++..|.+.......+..+++|+.|++++|.+.....+.+..+++|++|+++.|+++...+..|.-+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 88899999999999988766666777889999999999999888888888899999999999999988888999999999
Q ss_pred EEecCCccccCcchhhhccCcCCcEEeccCCccc----cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCC
Q 036411 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLS----VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLR 453 (487)
Q Consensus 378 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 453 (487)
+|+++.|.++-.....|..+.+|+.|+++.|.+. .....|..+++|+.|++.||++..+...+|..+.+|++|||.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 9999999887555667888899999999999874 344455689999999999999999888999999999999999
Q ss_pred CCcccccCcccccccCceeEEeccCC
Q 036411 454 DNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 454 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
+|.+..+-+++|..+ .|+.|.+..-
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred CCcceeecccccccc-hhhhhhhccc
Confidence 999988888899988 8888877653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9e-35 Score=263.36 Aligned_cols=322 Identities=23% Similarity=0.210 Sum_probs=270.2
Q ss_pred cccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 162 LSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 162 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
+..|.++.+|.+-+...+++.|++.+|.++ .+.......++.|+.++++.|.+..+... .+..-.+++.|++++|.++
T Consensus 109 l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 109 LNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred eccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEEeecccccc
Confidence 333344445555555667888888888877 44444455788899999998887654333 4456678999999999998
Q ss_pred ccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcC
Q 036411 242 GKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN 321 (487)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 321 (487)
+..... +..+.+|..|.++.|+++..-...|..+++|+.|++..|.+. .+....|.++++|+.+.+..|++.....-+
T Consensus 187 ~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 187 TLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred cccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 444444 444579999999999999777888999999999999999997 777778999999999999999998777778
Q ss_pred CcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCc
Q 036411 322 FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLE 401 (487)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 401 (487)
|..+.++++|++..|.+.......+.++++|+.|+++.|.|..+.++.+..++.|+.|+++.|.++...++.|..+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 88999999999999999877778888999999999999999988999999999999999999999977778899999999
Q ss_pred EEeccCCcccccccc-ccCCCcceEEEeeCcccCC---cchHhhhccCcceEEeCCCCcccccCcccccccCceeEEecc
Q 036411 402 FIDISENGLSVSMVS-LSNLSSVKHIYLHNNAING---LIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLR 477 (487)
Q Consensus 402 ~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 477 (487)
.|.+++|++....+. |..+++|++||+++|.++- ....+|..+++|+.|.+.||++-.+...+|..+++|++|++.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 999999999755544 4488999999999998763 245678889999999999999976667899999999999999
Q ss_pred CCccCCCCCC
Q 036411 478 GNSLQGRIPN 487 (487)
Q Consensus 478 ~~~~~~~~p~ 487 (487)
+|+|....|+
T Consensus 425 ~NaiaSIq~n 434 (873)
T KOG4194|consen 425 DNAIASIQPN 434 (873)
T ss_pred CCcceeeccc
Confidence 9999877664
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.7e-34 Score=248.97 Aligned_cols=459 Identities=27% Similarity=0.354 Sum_probs=288.3
Q ss_pred ccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCc
Q 036411 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHL 83 (487)
Q Consensus 4 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 83 (487)
+.++..+.++++.++... ..|.++..+..++.++.+.+.+. ..+..+..+.+|+.++++++.+. +.+..++.+..|
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 345566667777766543 34555666677777777777665 44556777777777777777776 556667777777
Q ss_pred cEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecc
Q 036411 84 KVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLS 163 (487)
Q Consensus 84 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (487)
+.++-.+|++. .+|..+.++.++..+++.++++... +..... ++.|++++. +.+.-+..+.....+.+|+.|++.
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~-m~~L~~ld~--~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIA-MKRLKHLDC--NSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHH-HHHHHhccc--chhhhhcCChhhcchhhhHHHHhh
Confidence 77777777766 4566666777777777777766532 222223 666666665 333333333445555566666666
Q ss_pred cccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccccc
Q 036411 164 HCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGK 243 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (487)
.+.+..+| .|.+|..|+++.++.|++. .++......++.+..|++..|.+...+... ..+.+|+.|++++|.++ .
T Consensus 215 ~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~--clLrsL~rLDlSNN~is-~ 289 (565)
T KOG0472|consen 215 RNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEI--CLLRSLERLDLSNNDIS-S 289 (565)
T ss_pred hcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHH--HHhhhhhhhcccCCccc-c
Confidence 66666665 4556666666666666665 555555556666666666666655443332 34455666666666665 4
Q ss_pred CCcccccccCceEEEEccCCCCCCCcchhhhc-----cccCcE----Eeccccc----CCCCCchhhh---cCCCCCcEE
Q 036411 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISE-----MKELIT----LDLSRNN----FSGELPRSIF---SSCLSLETL 307 (487)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~----L~l~~~~----~~~~~~~~~~---~~~~~L~~L 307 (487)
.|...+.. .|+.|.+.||++.......+++ ++.|+. =.++... -..+.+...| ....+.+.|
T Consensus 290 Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 290 LPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred CCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 55555543 5666666666653211111110 011111 0011000 0001111111 123455666
Q ss_pred ECCCCccCCCCCcCCcCC--CCccEEEcCCCcccccccccccCCCccc-EEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 308 DLSNNNFYGQLFPNFMNL--THLSSLRLNNNHFSGKMADGLLSSTLLD-VLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
++++-+++....+.|... .-...+++++|.+. +.|..+..+..+. .+.++.+.+ ++.|..+..+++|..|++++|
T Consensus 368 ~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred cccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccc
Confidence 666655553332222221 22566777777765 5555544444333 344455544 488888889999999999998
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccc
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQ 464 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 464 (487)
.+. ..|..+..+..|+.++++.|++...+.++.-...++.+-.++|++....+..+.++.+|..|||.+|.+. .+|..
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI 523 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence 877 7888888888899999999988866666665566777777789999888888999999999999999984 78999
Q ss_pred ccccCceeEEeccCCccC
Q 036411 465 INELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 465 l~~l~~L~~L~l~~~~~~ 482 (487)
+++|.+|++|+++||||+
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 999999999999999998
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=8.2e-31 Score=250.01 Aligned_cols=447 Identities=27% Similarity=0.325 Sum_probs=235.5
Q ss_pred ccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEecc
Q 036411 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDIS 89 (487)
Q Consensus 10 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 89 (487)
+..|++..|.+.....++..+.-+|+.|+++++.++ ..+..+..+++|+.|+++.|.+. ..|....++.+|+++++.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 566777777655544555566666888888888876 34445777888888888888887 667778888888888888
Q ss_pred CccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccc---------------cccCC
Q 036411 90 YNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE---------------NWLPT 154 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~---------------~~~~~ 154 (487)
++... .+|..+..+++|++|+++.|.+.. .+..+..+..+..+..+++..+...... .....
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence 77766 678888888888888888887642 1223333333333333322111111111 01111
Q ss_pred CCCce-eecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEE
Q 036411 155 YPLKV-LQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHL 233 (487)
Q Consensus 155 ~~L~~-L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 233 (487)
..+++ +++..+.+. ...+..+.+|+.+....+++. .+.. ..+.++.|....|.++.... -....+++.+
T Consensus 177 ~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~ 246 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDV---HPVPLNLQYL 246 (1081)
T ss_pred hhhheeeecccchhh--hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeecc---ccccccceee
Confidence 12222 444443332 112233344444444444332 1111 23445555555554441111 1223345566
Q ss_pred EccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc
Q 036411 234 DISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313 (487)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 313 (487)
+++.+.+. .+|.++. .+.+|+.++..+|.++ ..+......++|+.+....|.+. .+|... ++...|++|++..|.
T Consensus 247 dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l-e~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 247 DISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL-EGLKSLRTLDLQSNN 321 (1081)
T ss_pred ecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc-cccceeeeeeehhcc
Confidence 66666555 4443333 3456666666666554 33334444444444444444444 344321 334555555555554
Q ss_pred cCCCCCcCC-------------------------cCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchh
Q 036411 314 FYGQLFPNF-------------------------MNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPH 368 (487)
Q Consensus 314 ~~~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 368 (487)
+.......+ ..++.|+.|++.+|.++......+.+..+|+.|++++|++..+-..
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 432211111 1234455555555555544445555556666666666666545555
Q ss_pred hhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcce
Q 036411 369 WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLL 448 (487)
Q Consensus 369 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 448 (487)
.+.+++.|++|+++||.++ .+|.++.+++.|+.|...+|.+...+ .+..++.|+.+|++.|+++...-....-.++|+
T Consensus 402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK 479 (1081)
T ss_pred HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence 5566666666666666665 45566666666666666666665444 455566666666666665543221111125666
Q ss_pred EEeCCCCcccccCcccccccCceeEEeccCC
Q 036411 449 TLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 449 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
.||++||.-.......|..+.++...++.-+
T Consensus 480 yLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 480 YLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eeeccCCcccccchhhhHHhhhhhheecccC
Confidence 6666666533333334445555544444433
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-30 Score=246.40 Aligned_cols=432 Identities=27% Similarity=0.327 Sum_probs=312.9
Q ss_pred cccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCcc
Q 036411 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLK 84 (487)
Q Consensus 5 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 84 (487)
++.-+|+.|++++|.. ...|..+..+++|+.|+++.|.|. ..+....++.+|+++.|.++... ..|..+..+.+|+
T Consensus 42 ~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQ 117 (1081)
T ss_pred hheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-cCchhHHhhhccc
Confidence 3444599999998864 456778899999999999999887 44567889999999999999887 7888999999999
Q ss_pred EEeccCccccCCccccccCCCCCcEEecccc-------------------ccCcchhHHHhhccccceEEEeccCCCccc
Q 036411 85 VLDISYNQLSGNFPSVLTNLTSLEYLDLSFI-------------------DFQGTFLINSLANHSKLEVLVLSSGNDMLQ 145 (487)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 145 (487)
+|++++|.+. ..|..+..+..+..+..++| .+.+. .......++. .+++.++... .
T Consensus 118 ~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~-~~~~i~~l~~--~ldLr~N~~~-~ 192 (1081)
T KOG0618|consen 118 YLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGS-FLIDIYNLTH--QLDLRYNEME-V 192 (1081)
T ss_pred ccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccc-hhcchhhhhe--eeecccchhh-h
Confidence 9999999887 34555555555555555544 22211 1112222222 3444433222 1
Q ss_pred cccc-----------------cccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEE
Q 036411 146 VKTE-----------------NWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVL 208 (487)
Q Consensus 146 ~~~~-----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 208 (487)
.... ....-++++.|....|.+..... .....+|+.++++.+.++ .+| .+...+.+|+.+
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l 269 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNLS-NLP-EWIGACANLEAL 269 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc-ccccccceeeecchhhhh-cch-HHHHhcccceEe
Confidence 1000 01122345555555555432211 223467888999988887 677 555688999999
Q ss_pred EcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhcccc-CcEEecccc
Q 036411 209 ILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKE-LITLDLSRN 287 (487)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 287 (487)
...+|.++....+. ....+|+.+.+..|++. .++.... ....|++|++..|.+.......+..... ++.+..+.+
T Consensus 270 ~~n~N~l~~lp~ri--~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 270 NANHNRLVALPLRI--SRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred cccchhHHhhHHHH--hhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 99888876544332 55677888888888877 5555443 2478999999999887333323333332 667777777
Q ss_pred cCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCch
Q 036411 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIP 367 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 367 (487)
.+. ..|..-=...+.|+.|.+.+|.+++..++.+.++++|+.|++++|.+.......+..++.|++|+++||+++ .+|
T Consensus 346 ~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp 423 (1081)
T KOG0618|consen 346 KLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP 423 (1081)
T ss_pred ccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh
Confidence 776 555322234578999999999999988899999999999999999998677778889999999999999997 788
Q ss_pred hhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCC-CcceEEEeeCcccCCcchHhhhccCc
Q 036411 368 HWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNL-SSVKHIYLHNNAINGLIPIALLRSST 446 (487)
Q Consensus 368 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~ 446 (487)
.....+..|++|....|.+. ..| .+..++.|+.+|++.|.++........- |+|++||++||.-....-..+..+++
T Consensus 424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhh
Confidence 99999999999999999987 677 7889999999999999986444433333 89999999999866666678888888
Q ss_pred ceEEeCCCCc
Q 036411 447 LLTLDLRDNK 456 (487)
Q Consensus 447 L~~L~l~~~~ 456 (487)
+...++.-++
T Consensus 502 l~~~~i~~~~ 511 (1081)
T KOG0618|consen 502 LSQMDITLNN 511 (1081)
T ss_pred hhheecccCC
Confidence 8888887663
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4.1e-30 Score=235.43 Aligned_cols=368 Identities=25% Similarity=0.333 Sum_probs=240.8
Q ss_pred CCccEEeccCcccc-CCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCce
Q 036411 81 THLKVLDISYNQLS-GNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKV 159 (487)
Q Consensus 81 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 159 (487)
|-.+-+++++|.++ ...|.....+++++.|.+...++. ..++.++.+. +|++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lq-------------------------kLEH 59 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQ-------------------------KLEH 59 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHh-------------------------hhhh
Confidence 34455666666665 456666666677777776665542 1233444444 4555
Q ss_pred eecccccccccccccccCCcccEEeCCCCccc-CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCC
Q 036411 160 LQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLV-GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238 (487)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (487)
|++..|++..+...+..++.|+.+.+..|++. ..+|..+| .+..|+.|++++|.+...+.. ...-+++-.|++++|
T Consensus 60 Ls~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~--LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 60 LSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTN--LEYAKNSIVLNLSYN 136 (1255)
T ss_pred hhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchh--hhhhcCcEEEEcccC
Confidence 55555555444555555666666666666542 24444444 556666666666655433222 133345666777777
Q ss_pred cccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccC-CC
Q 036411 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY-GQ 317 (487)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~ 317 (487)
++. .+|..++..+..|-.|++++|++. ..|.....+..|++|++++|.+. -+....+-.+++|++|.+++.+-+ ..
T Consensus 137 ~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 137 NIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred ccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhc
Confidence 776 667766665666777777777776 55556666777777777777654 222222334566777777766532 35
Q ss_pred CCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccC
Q 036411 318 LFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL 397 (487)
Q Consensus 318 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 397 (487)
+|.++..+.+|+.++++.|.+. ..++++....+|+.|++++|+++ .+.-..+...+|++|+++.|+++ .+|..+.++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 5667777777888888877776 67777777778888888888776 33334455567778888888877 778888888
Q ss_pred cCCcEEeccCCcc--ccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEe
Q 036411 398 ESLEFIDISENGL--SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLL 475 (487)
Q Consensus 398 ~~L~~l~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 475 (487)
++|+.|...+|++ ..++.++..+.+|+++...+|.+. ..|+.+..|..|+.|.|+.|.+. .+|+++.-++.|+.||
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLD 368 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceee
Confidence 8888888888876 356777777777888877777776 45777888888888888888764 5788888888888888
Q ss_pred ccCCccCCCCC
Q 036411 476 LRGNSLQGRIP 486 (487)
Q Consensus 476 l~~~~~~~~~p 486 (487)
+..||-.-.+|
T Consensus 369 lreNpnLVMPP 379 (1255)
T KOG0444|consen 369 LRENPNLVMPP 379 (1255)
T ss_pred ccCCcCccCCC
Confidence 88887554544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.9e-29 Score=229.93 Aligned_cols=365 Identities=24% Similarity=0.319 Sum_probs=175.8
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEe
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLD 111 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 111 (487)
|-.+-.++++|++++...|.....++.++.|.+..+++. .+|+.++.+.+|++|.+++|.+.. +-..+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh
Confidence 334445555555544444444445555555555555444 445555555555555555554431 222334444445444
Q ss_pred ccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCccc
Q 036411 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLV 191 (487)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 191 (487)
+.+|.+..... +..+..+..|+.|+++.|++...|..+...+++-.|++++|++.
T Consensus 85 ~R~N~LKnsGi-------------------------P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 85 VRDNNLKNSGI-------------------------PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhccccccCCC-------------------------CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc
Confidence 44444332211 11223334455555555666555665566666666666666664
Q ss_pred CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcch
Q 036411 192 GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271 (487)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 271 (487)
.+|..++.++..|-.|++++|.+...++++ ..+..|++|++++| ++.-.-..
T Consensus 140 -tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~--RRL~~LqtL~Ls~N-------------------------PL~hfQLr 191 (1255)
T KOG0444|consen 140 -TIPNSLFINLTDLLFLDLSNNRLEMLPPQI--RRLSMLQTLKLSNN-------------------------PLNHFQLR 191 (1255)
T ss_pred -cCCchHHHhhHhHhhhccccchhhhcCHHH--HHHhhhhhhhcCCC-------------------------hhhHHHHh
Confidence 566666656666666666666554443332 33444555555554 43222222
Q ss_pred hhhccccCcEEecccccCC-CCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 272 SISEMKELITLDLSRNNFS-GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
.++.+++|+.|.+++.+-+ +.+|..+ ..+.+|..++++.|.+. ..|+.+..+++|++|++++|.++ +...+...+.
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~ 268 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE 268 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHh
Confidence 2333444444444444321 2333332 33444455555544443 23344444455555555555544 3333344444
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccC-cchhhhccCcCCcEEeccCCccccccccccCCCcceEEEee
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG-SIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLH 429 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 429 (487)
+|++|+++.|+++ .+|.++..++.|+.|.+.+|+++. .+|+.++++..|+.+...+|.+...++++..|+.|+.|.++
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc
Confidence 5555555555554 445555555555555555554432 23444555555555555555554455555555555555555
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCc
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
.|.+.+ .|+++.-++.|+.|++..|+
T Consensus 348 ~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 348 HNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccceee-chhhhhhcCCcceeeccCCc
Confidence 555443 24445445555555555554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1e-30 Score=226.87 Aligned_cols=456 Identities=26% Similarity=0.346 Sum_probs=266.8
Q ss_pred cEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC
Q 036411 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90 (487)
Q Consensus 11 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (487)
..+.+++|.+. ...+.+.+++.|.+|+++++... ..+.+++.+..++.++.+.+++. .+|+.+..+++|.++++++
T Consensus 48 ~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 48 QKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 34444444332 22233445555555555555554 33444555555555555555554 4555555555555555555
Q ss_pred ccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeeccccccccc
Q 036411 91 NQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN 170 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 170 (487)
+.+. .+++.++.+-.+..++..+|.+.. .+..+..+.++..+++.++ .....++... .++.|++++...+..+.+
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n-~l~~l~~~~i-~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGN-KLKALPENHI-AMKRLKHLDCNSNLLETL 198 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhcccc-chhhCCHHHH-HHHHHHhcccchhhhhcC
Confidence 5554 244445555555555555555432 2233444444444444332 2222222222 245566666666666666
Q ss_pred ccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCccccc
Q 036411 171 SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGI 250 (487)
Q Consensus 171 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 250 (487)
|..++.+.+|.-|++..|.+. .+|+ |.+|..|..+.++.|.+. +.+......++++..|++..|++. ++|..+..
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 666666666666666666654 4442 445666666666555544 222223345556666666666665 45554432
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCC--CcEEEC-------CCCcc---C---
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLS--LETLDL-------SNNNF---Y--- 315 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l-------~~~~~---~--- 315 (487)
..+|++||+++|.++ ..+..++++ +|++|.+.+|.+. ++..++.+..+. |++|.= +...- +
T Consensus 274 -LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 274 -LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred -hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 345666666666665 455556666 5666666666554 443333222110 111110 00000 0
Q ss_pred --CCCCcCCcCCCCccEEEcCCCcccccccccccC--CCcccEEEccCCccCCCchhhhcccccccE-EecCCccccCcc
Q 036411 316 --GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLS--STLLDVLDVSNNKLSGDIPHWIGNFSVLWL-LLMSENYLQGSI 390 (487)
Q Consensus 316 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~ 390 (487)
.........+.+.+.|++++-.++....+.|.. ..-...+++++|++. .+|..+..+..+.+ +.++++.++ ..
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence 001111223456777777777776333333322 224778889999886 77777777766544 455655555 77
Q ss_pred hhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCc
Q 036411 391 PVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470 (487)
Q Consensus 391 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 470 (487)
|..+..+++|..|++++|.+...+..+..+-.|+.|+++.|.|.. .|..+.....++.+-.++|++....+..+.++.+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 888899999999999999998888888888889999999999985 5777776777888888889986555566999999
Q ss_pred eeEEeccCCccCCCCCC
Q 036411 471 LHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 471 L~~L~l~~~~~~~~~p~ 487 (487)
|..||+.+|.+.+.+|+
T Consensus 507 L~tLDL~nNdlq~IPp~ 523 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPI 523 (565)
T ss_pred cceeccCCCchhhCChh
Confidence 99999999999877663
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.4e-21 Score=207.50 Aligned_cols=308 Identities=20% Similarity=0.182 Sum_probs=161.0
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEe
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVL 137 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 137 (487)
+|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|+.++++++......+ .++.+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEe
Confidence 3555555554443 333333 2345555555555444 233344445555555555443221111 2444555555555
Q ss_pred ccCCCccccccccccCCCCCceeecccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCC
Q 036411 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS 216 (487)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (487)
.+|.....++. .+..+++|+.|++++|.. ..++... .+++|+.|++++|.....++. ...+|+.|.+.++.+.
T Consensus 665 ~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 665 SDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE 738 (1153)
T ss_pred cCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence 55444433332 233444555555555432 3333322 455666666666543323332 2345666666666554
Q ss_pred CCCCCCCCcCCCCCcEEEccCCcccc------cCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCC
Q 036411 217 GILPRLPNAKYDKLRHLDISTNNFSG------KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
..+.. ..+++|+.|.+.++.... ..+......+++|+.|++++|......+..+.++++|+.|++++|...
T Consensus 739 ~lP~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 739 EFPSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccccc---ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 33221 134555655555432110 011111223457777777777665566667777777777777776544
Q ss_pred CCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhh
Q 036411 291 GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWI 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 370 (487)
+.+|... .+++|+.|++++|.....++. ..++|+.|++.+|.+. ..+..+..+++|+.|++++|.-...++...
T Consensus 816 ~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 816 ETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CeeCCCC--CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 4666543 467777777777754333322 1356777777777665 455556666777777777764433455555
Q ss_pred cccccccEEecCCcc
Q 036411 371 GNFSVLWLLLMSENY 385 (487)
Q Consensus 371 ~~~~~L~~L~l~~~~ 385 (487)
..++.|+.+++++|.
T Consensus 890 ~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCCCeeecCCCc
Confidence 666666666666663
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4e-21 Score=203.99 Aligned_cols=343 Identities=21% Similarity=0.198 Sum_probs=220.3
Q ss_pred HHhhccccceEEEeccCC-----CccccccccccCC-CCCceeecccccccccccccccCCcccEEeCCCCcccCCcchH
Q 036411 124 NSLANHSKLEVLVLSSGN-----DMLQVKTENWLPT-YPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTW 197 (487)
Q Consensus 124 ~~~~~~~~L~~l~l~~~~-----~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 197 (487)
..|..|++|+.+.+.... ......+..+... ..|+.|.+.++.+..+|..+ ...+|+.|++.++.+. .++..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 455666666666663321 0111111122222 35777777777666666655 4567777777777665 34333
Q ss_pred hhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccc
Q 036411 198 LLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMK 277 (487)
Q Consensus 198 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 277 (487)
. ..+++|+.++++++......+. ...+++|+.|++.+|.....+|..+. .+++|+.|++++|......+... +++
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 2 3567777777776543333332 35567777888877765445555544 34677888887775444444433 577
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccc-------cccccccCCC
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG-------KMADGLLSST 350 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~ 350 (487)
+|+.|++++|.....+|. ...+|+.|++.++.+.. .+..+ .+++|+.|.+.++.... ..+.....++
T Consensus 705 sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 788888877765434443 24577788887777643 23322 46677777776643210 1111222356
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|......+. ..++|++|++.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCC
Confidence 88899998887766788888889999999998886544566554 678899999998864322221 236788999999
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
|.++. .|.++..+++|+.|++++|.-...++..+..+++|+.+++++|+-..
T Consensus 856 n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 856 TGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 88875 47778888999999999887666777778888899999999887443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=6.7e-25 Score=190.55 Aligned_cols=413 Identities=20% Similarity=0.148 Sum_probs=254.0
Q ss_pred CCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC-ccccCCccccccCCCCCcEEe
Q 036411 33 SLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY-NQLSGNFPSVLTNLTSLEYLD 111 (487)
Q Consensus 33 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 111 (487)
.-..+++..|.|+ .+++.+|+.+++|+.|||+.|.|+.+.|.+|.++++|..|-+++ |+|++.....|..+..++.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5667888888886 56778899999999999999999888889999999888887777 788877777888999999998
Q ss_pred ccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCccc
Q 036411 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLV 191 (487)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 191 (487)
+.-+++. ......+..+++++.|.+.+ ..+..+....+.+...++++.+..+.+.. ..+++.+.....- +
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~~a~-~--- 216 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADDLAM-N--- 216 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcccc----ccccchhhhHHhh-c---
Confidence 8887776 45567888888888887743 33444555566666677777666554210 1111111111000 0
Q ss_pred CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcch
Q 036411 192 GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271 (487)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 271 (487)
...++++.-.....+.+..+.......+......+.+--.+.+......|..-+..+++|+.|++++|.++++-..
T Consensus 217 ----~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 217 ----PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred ----hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 0001111111112222222222222111111111111112233333344555566778899999999998888888
Q ss_pred hhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccc-cccc----
Q 036411 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKM-ADGL---- 346 (487)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~---- 346 (487)
+|.....+++|.+.+|++. .+...+|.++..|+.|++.+|+++...+.+|..+.+|.+|.+-.|++--.- ...+
T Consensus 293 aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 8888889999999999887 788888888999999999999888777888888888888888877753100 0000
Q ss_pred -----------cCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEE-eccCCcccccc
Q 036411 347 -----------LSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFI-DISENGLSVSM 414 (487)
Q Consensus 347 -----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l-~l~~~~~~~~~ 414 (487)
+....++.+.+++..+.++- |..-++.... ..+..-..++.+.++ ..++..++..+
T Consensus 372 r~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~------c~~~ee~~~~------~s~~cP~~c~c~~tVvRcSnk~lk~lp 439 (498)
T KOG4237|consen 372 RKKSVVGNPRCQSPGFVRQIPISDVAFGDFR------CGGPEELGCL------TSSPCPPPCTCLDTVVRCSNKLLKLLP 439 (498)
T ss_pred hhCCCCCCCCCCCCchhccccchhccccccc------cCCccccCCC------CCCCCCCCcchhhhhHhhcccchhhcC
Confidence 11113333433333221110 0000000000 011111233344332 33444444444
Q ss_pred ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCC
Q 036411 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
..+. ..-.++++.+|.++.+..+ ..++| .+++++|++...--..|.++..|.+|.+++|
T Consensus 440 ~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4443 3567888899999877665 44677 8999999986555567889999999998876
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-22 Score=176.02 Aligned_cols=375 Identities=19% Similarity=0.216 Sum_probs=203.5
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccc-cccCcchhHHHhhccccceEEE
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF-IDFQGTFLINSLANHSKLEVLV 136 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~ 136 (487)
.-.+|+|..|+|+...+.+|+.+++|+.|++++|.|+.+.|..|..++++..|-+.+ |+++ ..+...|+.+..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 455667777777666666677777777777777777766777777777666666655 4444 33444555555554444
Q ss_pred eccCCCccccccccccCCCCCceeecccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCC
Q 036411 137 LSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215 (487)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (487)
+ ..+++ ......+..++++..|.+..|.+. .++...+..+.+++.+-+..+++
T Consensus 147 l-------------------------Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 147 L-------------------------NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred c-------------------------ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 4 44443 222334444555555555554443 33333333444444444433332
Q ss_pred CCC-----------CCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE---EccCCCCCCC-cchhhhccccCc
Q 036411 216 SGI-----------LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL---DVSKNSFEGN-IPYSISEMKELI 280 (487)
Q Consensus 216 ~~~-----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~-~~~~~~~~~~L~ 280 (487)
... .....++.........+.+..+...-...+. .+++.+ -.+.+..... -...|..+++|+
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~---c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL---CSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh---hhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 110 0000111222222222222222211111111 112211 1122222222 233577888888
Q ss_pred EEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCC
Q 036411 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360 (487)
Q Consensus 281 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (487)
+|++++|.++ .+....|++...+++|.+.+|++......+|..+..|+.|++++|.++...+..|....+|.+|++-+|
T Consensus 278 ~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 278 KLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred EeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 8888888887 777788888888888888888876555566778888888888888888777888888888888888776
Q ss_pred ccCC-----CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc-------------cccccccCCCc
Q 036411 361 KLSG-----DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-------------VSMVSLSNLSS 422 (487)
Q Consensus 361 ~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------------~~~~~~~~~~~ 422 (487)
.+.. ....|+..- ...+..+. ++-..++.+.+++..+. .....-..++.
T Consensus 357 p~~CnC~l~wl~~Wlr~~-----------~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c 423 (498)
T KOG4237|consen 357 PFNCNCRLAWLGEWLRKK-----------SVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTC 423 (498)
T ss_pred cccCccchHHHHHHHhhC-----------CCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcch
Confidence 5532 222222211 10101110 01112333444433221 11111224555
Q ss_pred ceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 423 VKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 423 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
+..+.=-+|+..+..|..++ ..-..+++.+|.++ .+|.. .+.+| .+|+++|+|+
T Consensus 424 ~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 424 LDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred hhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 65544334444445555554 56788999999996 45544 67778 8999999976
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=1.4e-18 Score=171.67 Aligned_cols=260 Identities=26% Similarity=0.356 Sum_probs=151.2
Q ss_pred ccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEE
Q 036411 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLD 259 (487)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 259 (487)
-..|+++.+.++ .+|..+. ++++.|.+.+|.++.... .+++|+.|++++|+++ .+|. .+++|+.|+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 445666666655 4554432 356666666666554321 2356777777776665 3343 235677777
Q ss_pred ccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccc
Q 036411 260 VSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
+++|.+. .++. ..++|+.|++++|.+. .+|. .+++|+.|++++|.+.+. +. ....|+.|.+.+|.++
T Consensus 269 Ls~N~L~-~Lp~---lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 269 IFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 335 (788)
T ss_pred ccCCchh-hhhh---chhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CC---CcccccccccccCccc
Confidence 7777665 2222 2245666777777666 5553 135677777777766542 11 1234666667776665
Q ss_pred ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccC
Q 036411 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSN 419 (487)
Q Consensus 340 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 419 (487)
. .+. ...+|+.|++++|++++ +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|++...+..
T Consensus 336 ~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l--- 400 (788)
T PRK15387 336 S-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL--- 400 (788)
T ss_pred c-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---
Confidence 2 222 12367777777777663 3332 245666777777666 33432 24577777777776543321
Q ss_pred CCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 420 LSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 420 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
.++|+.|++++|.++.+ |.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 401 ~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 401 PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 25677777777777654 322 245677777777775 567777777777777777777776644
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.8e-17 Score=163.96 Aligned_cols=265 Identities=24% Similarity=0.255 Sum_probs=179.3
Q ss_pred CceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEcc
Q 036411 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236 (487)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (487)
-..|+++++.++.+|..+. ++|+.|.+.+|.++ .++. ..++|++|++++|.+..... ..++|+.|++.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~-----lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC-----cccccceeecc
Confidence 4567777777766666543 46788888888776 4543 35778888888887764421 23578888888
Q ss_pred CCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC
Q 036411 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG 316 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 316 (487)
+|.+. .++. .++.|+.|++++|.++. ++. ..++|+.|++++|.+. .+|.. ..+|+.|++.+|.+.+
T Consensus 271 ~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 271 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred CCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccCcccc
Confidence 88765 3343 23578888888887763 332 2467888888888877 56542 3467778888887764
Q ss_pred CCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhcc
Q 036411 317 QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396 (487)
Q Consensus 317 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 396 (487)
. +. ...+|+.|++++|.+.. .+.. ..+|+.|++++|++.. +|.. .++|+.|++++|.+. ..|..
T Consensus 337 L-P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l--- 400 (788)
T PRK15387 337 L-PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL--- 400 (788)
T ss_pred c-cc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---
Confidence 2 22 12468888888888773 3322 3567788888888763 4432 356888888888877 34432
Q ss_pred CcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccc
Q 036411 397 LESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINE 467 (487)
Q Consensus 397 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 467 (487)
.++|+.|++++|+++..+.. ..+|+.|++++|+++. +|..+..+++|+.|++++|++++..+..+.+
T Consensus 401 ~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 25788888888888654432 3467888888888885 4666778888888999888887766665533
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=6.4e-17 Score=161.04 Aligned_cols=119 Identities=25% Similarity=0.355 Sum_probs=52.1
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|+.|++++|+++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++..+..+ .++|+.|++++
T Consensus 305 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~ 376 (754)
T PRK15370 305 GITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSR 376 (754)
T ss_pred hHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCC
Confidence 34445555554442 22211 134555555555444 2333332 45555555555544333222 14455555555
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcc----cccccCceeEEeccCCcc
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH----QINELSNLHFLLLRGNSL 481 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 481 (487)
|.++.. |..+. .+|+.|++++|++. .+|+ ....++.+..|++.+||+
T Consensus 377 N~Lt~L-P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 377 NALTNL-PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CcCCCC-CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 555533 22222 24555555555553 2232 222335555555555554
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=5.7e-18 Score=156.95 Aligned_cols=273 Identities=25% Similarity=0.262 Sum_probs=183.8
Q ss_pred EEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCccc---ccccCceEEEEccCCCCCC------Ccchhhhcccc
Q 036411 208 LILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENL---GIVFQKLIYLDVSKNSFEG------NIPYSISEMKE 278 (487)
Q Consensus 208 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~ 278 (487)
|++.++.+........+..++.++.+++.++.+++.....+ ....+.+++++++++.+.. .....+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 44555544422222233556679999999998754322222 2234569999999987752 12335666889
Q ss_pred CcEEecccccCCCCCchhhhcCCC---CCcEEECCCCccCCC----CCcCCcCC-CCccEEEcCCCccccc----ccccc
Q 036411 279 LITLDLSRNNFSGELPRSIFSSCL---SLETLDLSNNNFYGQ----LFPNFMNL-THLSSLRLNNNHFSGK----MADGL 346 (487)
Q Consensus 279 L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~~ 346 (487)
|+.|++++|.+.+..+. .+..+. +|++|++++|.+.+. ....+..+ ++|++|++.+|.+++. ....+
T Consensus 83 L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999988633332 333344 499999999987632 22234455 8899999999988732 23345
Q ss_pred cCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCcccc-ccccc
Q 036411 347 LSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLSV-SMVSL 417 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~-~~~~~ 417 (487)
..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.. ...+..+++|+.|++++|++.. ....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667899999999988743 2334556679999999999876432 3345678899999999998752 11111
Q ss_pred c-----CCCcceEEEeeCcccCCc----chHhhhccCcceEEeCCCCccccc----Cccccccc-CceeEEeccCCcc
Q 036411 418 S-----NLSSVKHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKFFGR----IPHQINEL-SNLHFLLLRGNSL 481 (487)
Q Consensus 418 ~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~ 481 (487)
. ..+.|++|++.+|.+++. ....+..+++|+.+++++|.++.. ....+... +.|+++++.+||+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 247899999999988743 234456668899999999998644 33445555 7999999998875
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.1e-18 Score=159.82 Aligned_cols=275 Identities=25% Similarity=0.230 Sum_probs=174.0
Q ss_pred EEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCC---CCCCcCCCCCcEEEccCCcccc--c----CCccccccc
Q 036411 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILP---RLPNAKYDKLRHLDISTNNFSG--K----LPENLGIVF 252 (487)
Q Consensus 182 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~----~~~~~~~~~ 252 (487)
.|++.++.+.+......+..++.|+.+.+.++.+..... .......++++.+++.++.+.. . ++..+ ...
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-Hhc
Confidence 456666666655555566677778888888887643211 0022455668888888776541 1 11112 224
Q ss_pred CceEEEEccCCCCCCCcchhhhcccc---CcEEecccccCCCCCch---hhhcCC-CCCcEEECCCCccCCC----CCcC
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKE---LITLDLSRNNFSGELPR---SIFSSC-LSLETLDLSNNNFYGQ----LFPN 321 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~----~~~~ 321 (487)
++|++|++++|.+....+..+..+.. |+.|++++|.+.+.... ..+..+ ++|+.+++.+|.+.+. ....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 68888888888876544444444444 88888888887632111 123445 7888888888887632 2233
Q ss_pred CcCCCCccEEEcCCCcccccc----cccccCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcchhh
Q 036411 322 FMNLTHLSSLRLNNNHFSGKM----ADGLLSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSIPVQ 393 (487)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 393 (487)
+..++.|++|++.+|.+.+.. ...+...++|+.|++++|.+.+. ....+..+++|++|++++|.+.+.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 556678888888888876322 22344556888888888877643 2344566788888888888776533333
Q ss_pred hc-----cCcCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCcch----Hhhhcc-CcceEEeCCCCcc
Q 036411 394 LG-----NLESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGLIP----IALLRS-STLLTLDLRDNKF 457 (487)
Q Consensus 394 ~~-----~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~ 457 (487)
+. ..+.|++|++++|.++ .....+..+++|+++++++|.+++... ..+... +.|+.+++.++++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 22 1368888888888774 223344456788888888888886532 333334 6788888877753
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1.1e-16 Score=159.34 Aligned_cols=245 Identities=24% Similarity=0.329 Sum_probs=118.6
Q ss_pred CceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEcc
Q 036411 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236 (487)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (487)
...|.+.++.++.+|..+ .+.++.|++++|.++ .++...+ ++|+.|.+++|.+..... .-.++|+.|+++
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~----~l~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPA----TLPDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCCh----hhhccccEEECc
Confidence 445555555554444432 235666666666555 4444332 356666666555543221 112345666666
Q ss_pred CCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC
Q 036411 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG 316 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 316 (487)
+|.+. .+|..+ +.+|+.|++++|.+. .++..+ .++|+.|++++|.+. .+|... .++|+.|++++|.+..
T Consensus 250 ~N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 250 INRIT-ELPERL---PSALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA 318 (754)
T ss_pred CCccC-cCChhH---hCCCCEEECcCCccC-cccccc--CCCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc
Confidence 66554 444433 235566666665554 233222 235666666666555 444332 2345556666655542
Q ss_pred CCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhcc
Q 036411 317 QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396 (487)
Q Consensus 317 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 396 (487)
. +..+ .++|+.|.+.+|.++. .+..+ +++|+.|++++|+++ .+|..+. ++|++|++++|.+. ..|..+.
T Consensus 319 L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 L-PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred C-Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence 2 2211 2455556666555542 23222 245566666666554 2333322 45556666665555 3333332
Q ss_pred CcCCcEEeccCCcccccccccc----CCCcceEEEeeCcccC
Q 036411 397 LESLEFIDISENGLSVSMVSLS----NLSSVKHIYLHNNAIN 434 (487)
Q Consensus 397 ~~~L~~l~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~ 434 (487)
.+|+.|++++|++...+..+. .++.+..|++.+|.++
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 245555566655543332222 2355555666665554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.5e-16 Score=120.35 Aligned_cols=178 Identities=23% Similarity=0.382 Sum_probs=125.0
Q ss_pred CCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEe
Q 036411 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 380 (487)
+.++..|.+++|.++ ..++.++.+.+|+.|++.+|.+. +.+..++.+++|+.|+++-|++. ..|..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 456677777888776 45566777788888888888876 66777777888888888777765 6777788888888888
Q ss_pred cCCccccC-cchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 381 MSENYLQG-SIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 381 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
+..|++.. .+|..|..+..|+-|++++|.+...+.....+++|+.|.+++|.+.+. |..+..+..|+.|.+.+|.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceee-
Confidence 87777653 456667777777777788877777777777777777777777777643 555666677777777777774
Q ss_pred cCccccccc---CceeEEeccCCccCC
Q 036411 460 RIPHQINEL---SNLHFLLLRGNSLQG 483 (487)
Q Consensus 460 ~~~~~l~~l---~~L~~L~l~~~~~~~ 483 (487)
.+|.-++++ .+=+.+.+.+||...
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 444444433 234455555665443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-14 Score=112.45 Aligned_cols=157 Identities=30% Similarity=0.435 Sum_probs=82.2
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
..++.|.+++|.++ ..+..+..+.+|+.|++++|++. ++|.++ +.+++|+.|++.-|.+. ..+..|..+|.|+.|+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 34555666666655 34444555566666666666665 555554 45566666666555543 3445555555555555
Q ss_pred cCCCccc-ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 333 LNNNHFS-GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 333 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+.+|.+. ...+..|..++.|+.|.+++|.+. .+|...+++++|+-|.+.+|.+. .+|..+..+..|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 5555543 123334444445555555555543 44445555555555555555444 44444444555555555555554
Q ss_pred cccc
Q 036411 412 VSMV 415 (487)
Q Consensus 412 ~~~~ 415 (487)
..++
T Consensus 187 vlpp 190 (264)
T KOG0617|consen 187 VLPP 190 (264)
T ss_pred ecCh
Confidence 4333
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.9e-12 Score=112.05 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=84.8
Q ss_pred cCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccC----cchhhhccCcCCcEEeccCCccc-----cc
Q 036411 347 LSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQG----SIPVQLGNLESLEFIDISENGLS-----VS 413 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~-----~~ 413 (487)
...+.|+.+..+.|++... +...++..+.|+.+.+..|.+.. .....+..||+|+.|+|.+|.++ ..
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3456677777777766432 33455666777777777776532 22344667777777777777663 23
Q ss_pred cccccCCCcceEEEeeCcccCCcchHhh-----hccCcceEEeCCCCcccc----cCcccccccCceeEEeccCCcc
Q 036411 414 MVSLSNLSSVKHIYLHNNAINGLIPIAL-----LRSSTLLTLDLRDNKFFG----RIPHQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 481 (487)
...+...++|++|.+++|.+......++ ...++|+.|.+.+|.++. .+...+...|.|..|++++|.+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4444466777788887777775443332 224677788888877742 2333445677777888887776
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.2e-12 Score=113.15 Aligned_cols=212 Identities=23% Similarity=0.191 Sum_probs=140.2
Q ss_pred cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCC--cchhccCCCCccEEeccCccccCCccccc-cCCC
Q 036411 29 NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH--LPQCLNNLTHLKVLDISYNQLSGNFPSVL-TNLT 105 (487)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~ 105 (487)
+++.+|+...+.++.............|++++.||++.|-+..- .......+|+|+.|+++.|.+.....+.. ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45678888888888876333334567889999999998866422 22345678999999999887653322221 2567
Q ss_pred CCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccc--cccccCCcccEE
Q 036411 106 SLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS--SFLLHQHHLKFL 183 (487)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L 183 (487)
.|+.|.++.|++........+..+|+|+.|.+..+. ............+.|+.|+++++.+..++ ...+.+++|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 888999999999877778888899999999987765 22233333445567888888888874444 456678888888
Q ss_pred eCCCCcccCCcchH-----hhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 184 DLSHNQLVGNFPTW-----LLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 184 ~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
+++.+.+.+--... ....++.|++|++..|++.+....-....+++++.+.+..+.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88888765311111 12345677777777776654433333345556666666555443
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=1.1e-11 Score=105.07 Aligned_cols=225 Identities=23% Similarity=0.271 Sum_probs=141.0
Q ss_pred cCceEEEEccCCC--C------CCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCc
Q 036411 252 FQKLIYLDVSKNS--F------EGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM 323 (487)
Q Consensus 252 ~~~L~~L~l~~~~--~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 323 (487)
+..|++|.+++.. + ....+..+..+.+|..+.++.|.-. .+..-. ..-|.|+++.+...-... .+.+.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~-~~kptl~t~~v~~s~~~~--~~~l~ 256 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIE-LLKPTLQTICVHNTTIQD--VPSLL 256 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heecee-ecCchhheeeeecccccc--ccccc
Confidence 3456666665432 1 1133445556677777777776544 222211 223667777765543321 12222
Q ss_pred CCCCccEEEcCCCc-ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcE
Q 036411 324 NLTHLSSLRLNNNH-FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEF 402 (487)
Q Consensus 324 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 402 (487)
.+.++.......-. ..+.....+.-+..|+++|+++|.++ .+.....-.|.++.|+++.|.+... ..++.+++|+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceE
Confidence 22333322222111 11222333445667888999998886 5566677778889999999887632 22677889999
Q ss_pred EeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCc-ccccccCceeEEeccCCcc
Q 036411 403 IDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIP-HQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 481 (487)
|++++|.++.....-..+.+++.|.+.+|.+.+. ..+..+-+|..||+++|++...-. ..++++|-|+.+.+.+||+
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 9999998864444444778888999999888754 345667788999999998843222 3678899999999999998
Q ss_pred CCCC
Q 036411 482 QGRI 485 (487)
Q Consensus 482 ~~~~ 485 (487)
.+++
T Consensus 412 ~~~v 415 (490)
T KOG1259|consen 412 AGSV 415 (490)
T ss_pred cccc
Confidence 8653
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.7e-12 Score=111.51 Aligned_cols=206 Identities=21% Similarity=0.227 Sum_probs=118.9
Q ss_pred CCceeecccccccccc--cccccCCcccEEeCCCCcccCCcc-hHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 156 PLKVLQLSHCHLNVNS--SFLLHQHHLKFLDLSHNQLVGNFP-TWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
+|+.+.+.++.+...+ .....|++++.|+++.|-+....+ ..+++++|+|+.|+++.|.+...........++.++.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 4666666666654333 355567777777777775542222 2345677778888777777655444333356677788
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCc-hhhhcCCCCCcEEECCC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP-RSIFSSCLSLETLDLSN 311 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~ 311 (487)
|.+++|.++.....++...+|+|+.|.+.+|...........-++.|++|++++|++. .++ ......++.|+.|+++.
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence 8888877764444444555677777877777432233333445667777777777766 343 22335567777777777
Q ss_pred CccCCCCCcC------CcCCCCccEEEcCCCcccc-cccccccCCCcccEEEccCCcc
Q 036411 312 NNFYGQLFPN------FMNLTHLSSLRLNNNHFSG-KMADGLLSSTLLDVLDVSNNKL 362 (487)
Q Consensus 312 ~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 362 (487)
|.+.+..... ...+++|+.|.+..|++.. .....+...++|+.+.+-.+.+
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 7664322111 2345666777766666631 1112223344555555555544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=8.1e-11 Score=95.64 Aligned_cols=126 Identities=27% Similarity=0.311 Sum_probs=48.6
Q ss_pred cCCCcccEEEccCCccCCCchhhhc-ccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccccc-CCCcce
Q 036411 347 LSSTLLDVLDVSNNKLSGDIPHWIG-NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLS-NLSSVK 424 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~ 424 (487)
.++.++++|+++|++++.. ..++ .+..|+.|++++|.+.. . +.+..++.|+.|++++|.++...+.+. .+|+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3455788889999888632 2344 56788888888888863 2 356778888888888888875544443 578888
Q ss_pred EEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccCc---ccccccCceeEEec
Q 036411 425 HIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLL 476 (487)
Q Consensus 425 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l 476 (487)
+|++++|++..... ..+..+++|+.|++.+|+++..-- ..+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888888875432 456778888888888888864321 25567888888773
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=9.7e-11 Score=95.17 Aligned_cols=129 Identities=29% Similarity=0.250 Sum_probs=52.4
Q ss_pred ccccccEEecCCcccccccccccc-CCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhc-cCCCCc
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLN-TLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCL-NNLTHL 83 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L 83 (487)
+..+++.|+|.++.+... +.+. .+.+|+.|++++|.|... +.+..++.|++|++++|.+++. ...+ ..+|+|
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 445688899999887653 3455 578999999999998743 3478889999999999999844 3334 468999
Q ss_pred cEEeccCccccCC-ccccccCCCCCcEEeccccccCcch--hHHHhhccccceEEEeccC
Q 036411 84 KVLDISYNQLSGN-FPSVLTNLTSLEYLDLSFIDFQGTF--LINSLANHSKLEVLVLSSG 140 (487)
Q Consensus 84 ~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l~~~ 140 (487)
++|++++|.+.+. .-..+..+++|+.|++.+|.+.... -...+..+|+|+.|+-...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999988632 1245677899999999988876432 3457788888888876443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-11 Score=107.37 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=108.5
Q ss_pred hhccccCcEEecccccCCCCCch---hhhcCCCCCcEEECCCCccCCCC-------------CcCCcCCCCccEEEcCCC
Q 036411 273 ISEMKELITLDLSRNNFSGELPR---SIFSSCLSLETLDLSNNNFYGQL-------------FPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~~~~L~~L~l~~~ 336 (487)
+..+++|+.|++++|.+....+. ....++..|++|.+.+|.+.... ......-+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33444555555555554322221 12234555555555555443211 111234466777777766
Q ss_pred cccc----cccccccCCCcccEEEccCCccCC----CchhhhcccccccEEecCCccccC----cchhhhccCcCCcEEe
Q 036411 337 HFSG----KMADGLLSSTLLDVLDVSNNKLSG----DIPHWIGNFSVLWLLLMSENYLQG----SIPVQLGNLESLEFID 404 (487)
Q Consensus 337 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~ 404 (487)
.+.. .....+...+.|+.+.+..|.+.. .....+..|++|+.|++.+|.++. .+...++..++|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 6542 233445566777888877776532 234566778888888888886653 2334456677888888
Q ss_pred ccCCccc-----ccccccc-CCCcceEEEeeCcccCCcchHh----hhccCcceEEeCCCCcc
Q 036411 405 ISENGLS-----VSMVSLS-NLSSVKHIYLHNNAINGLIPIA----LLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 405 l~~~~~~-----~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 457 (487)
+++|.+. .....+. ..|.|+.+.+.+|.++.....+ +...+.|+.|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8888763 1122222 5688888888888887543333 33458888888888887
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=4.5e-12 Score=116.66 Aligned_cols=172 Identities=36% Similarity=0.476 Sum_probs=93.7
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
..-...+++.|.+. ++|..+ ..+..|+.+.+..|.+. .+++.+.++..|..++++.|.++ ..+..++.++ |+.|-
T Consensus 75 tdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 33445566666666 666553 44556666666665553 44555556666666666666655 3444443333 55556
Q ss_pred ccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCc
Q 036411 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
+++|+++ .+|..++..+.|..++.+.|.+. ..|..+..+.+|+.+.+..|.+...+..+..+| |..||++.|++..
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~- 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISY- 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceee-
Confidence 6666554 44555555555555555555554 455555555555555555555544444444333 5555555555553
Q ss_pred chHhhhccCcceEEeCCCCcc
Q 036411 437 IPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 437 ~~~~~~~~~~L~~L~l~~~~~ 457 (487)
+|..|..+++|+.|-|.+|++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred cchhhhhhhhheeeeeccCCC
Confidence 344555555555555555555
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=7e-10 Score=105.81 Aligned_cols=197 Identities=33% Similarity=0.419 Sum_probs=124.6
Q ss_pred EEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCC-CCcEEECCCCccCCCCCcCCcCCCCccEEEcCC
Q 036411 257 YLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL-SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335 (487)
Q Consensus 257 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (487)
.+....+.+... .......+.++.+++.++.++ .++... .... +|+.|++++|.+.. .+..+..++.|+.|++.+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 566666665322 223344567888888888887 666643 3342 78888888887753 224566777888888888
Q ss_pred CcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc
Q 036411 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV 415 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 415 (487)
|++. ..+......+.|+.+++++|++. .+|........|+++.+++|... ..+..+.++.++..+.+.++++.....
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc
Confidence 8776 44444345677777777777776 44444445556777777777433 445555666666666666666654455
Q ss_pred cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCc
Q 036411 416 SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIP 462 (487)
Q Consensus 416 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 462 (487)
.+..+++++.|++++|.++.... +....+++.|+++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 55566667777777777665543 5556667777777766654444
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=6.9e-10 Score=105.85 Aligned_cols=200 Identities=31% Similarity=0.457 Sum_probs=146.7
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccc-cCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMK-ELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+....+.+...... .. ..+.++.+++.++.++. .+......+ +|+.|++++|.+. .++.. ...+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~~-~~-~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISE-LL-ELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchh-hh-cccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhh-hhccccccccccC
Confidence 466666655312111 11 12579999999999884 343444453 8999999999998 66533 3678999999999
Q ss_pred CCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcc
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI 390 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 390 (487)
+|++.+.. ......+.|+.|+++++.+. ..+........|+++.+++|.+. ..+..+..+.++..+.+.++.+. ..
T Consensus 172 ~N~l~~l~-~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLSDLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhhhhh-hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 99987433 33336789999999999987 44444344566999999999643 56667788888888888888776 34
Q ss_pred hhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhh
Q 036411 391 PVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIAL 441 (487)
Q Consensus 391 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 441 (487)
+..+..+++++.|++++|.+..... +....+++.|+++++.+....+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence 6777888899999999999875555 7788999999999999887655443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=3.2e-10 Score=75.66 Aligned_cols=61 Identities=30% Similarity=0.445 Sum_probs=54.8
Q ss_pred CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCcc
Q 036411 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 481 (487)
|+|++|++++|++....+.+|..+++|+.|++++|.+....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888899999999999999999877778999999999999999985
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.2e-10 Score=97.41 Aligned_cols=127 Identities=22% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
+.|+++++++|.++ .+.+.+.-.|.++.|+++.|.+... ..++.+++|+.|++++|.++ ....+-.++.+.+.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44455555555544 3334444445555555555544311 12444555555555555444 23333334445555555
Q ss_pred cCCccccccccccCCCcceEEEeeCcccCCcch-HhhhccCcceEEeCCCCcc
Q 036411 406 SENGLSVSMVSLSNLSSVKHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 457 (487)
.+|.+. ...++..+.+|..||+++|+|..... ..+.+++.|+.+.|.+|++
T Consensus 360 a~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 555443 33334444555555555555543211 1234455555555555555
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.6e-11 Score=101.31 Aligned_cols=157 Identities=24% Similarity=0.145 Sum_probs=99.1
Q ss_pred CCcEEECCCCccCCC-cchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccc-cCcchhHHHhhccccceEE
Q 036411 58 NLLELDLSSNNFEGH-LPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFID-FQGTFLINSLANHSKLEVL 135 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l 135 (487)
.|+.+|+++..++.. ....++.|.+|+.|.+.+..+.+.+...+.+-.+|+.++++.+. ++.....-.+..|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477788887776532 23345678888888888887777777777777888888888764 5555555677788888888
Q ss_pred EeccCCCccccccccc-cCCCCCceeecccccc----cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEc
Q 036411 136 VLSSGNDMLQVKTENW-LPTYPLKVLQLSHCHL----NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210 (487)
Q Consensus 136 ~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 210 (487)
++++|....+...... .-.++|+.|+++++.- ..+......|+++.+|+++++..........+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8887765544433222 2234677777777653 3333344567777777777764322233333335666666666
Q ss_pred ccCC
Q 036411 211 WNNS 214 (487)
Q Consensus 211 ~~~~ 214 (487)
++|-
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 6553
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.94 E-value=3.5e-11 Score=106.80 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=18.3
Q ss_pred CCcccEEEccCCcc-CCCchhhhcccccccEEecCCcc
Q 036411 349 STLLDVLDVSNNKL-SGDIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 349 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 385 (487)
...|+.+.+.+|+. ++..-..+..|++|+.+++.++.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34455555555542 22333344555555555555553
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=3.8e-11 Score=106.56 Aligned_cols=301 Identities=17% Similarity=0.069 Sum_probs=139.5
Q ss_pred CCcEEECCCCccCCC--cchhccCCCCccEEeccCcc-ccCCccc-cccCCCCCcEEecccc-ccCcchhHHHhhccccc
Q 036411 58 NLLELDLSSNNFEGH--LPQCLNNLTHLKVLDISYNQ-LSGNFPS-VLTNLTSLEYLDLSFI-DFQGTFLINSLANHSKL 132 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L 132 (487)
.|++|.++++.-... .-....+||++++|++++|. +++.... .-.+|++|+++++..| .++...+......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566666666543211 11223456666666666664 3322111 2235666666666664 24433344455566666
Q ss_pred eEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCc-ccCCcchHhhhcCCCCcEEEcc
Q 036411 133 EVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQ-LVGNFPTWLLQNNTGLEVLILW 211 (487)
Q Consensus 133 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~ 211 (487)
+++++++|..+..-... ....+++.++.+...+|. ...+....+...++.+.++++.
T Consensus 219 ~~lNlSwc~qi~~~gv~----------------------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQ----------------------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred HHhhhccCchhhcCcch----------------------HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchh
Confidence 66666666555442211 122223333333333332 1111111111223333344433
Q ss_pred cCCC-CCCCCCCCCcCCCCCcEEEccCCc-ccccCCcccccccCceEEEEccCCCC-CCCcchh-hhccccCcEEecccc
Q 036411 212 NNSF-SGILPRLPNAKYDKLRHLDISTNN-FSGKLPENLGIVFQKLIYLDVSKNSF-EGNIPYS-ISEMKELITLDLSRN 287 (487)
Q Consensus 212 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~ 287 (487)
.|.. ++...+.....+..++.+..+++. +++......+...++|+.+.+.+|.- ++..... -.+++.|+.+++.++
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 3321 111111111233444555544442 22222333344445666666666642 2111111 134566677776665
Q ss_pred cCCCCC-chhhhcCCCCCcEEECCCCccC-CCC----CcCCcCCCCccEEEcCCCccc-ccccccccCCCcccEEEccCC
Q 036411 288 NFSGEL-PRSIFSSCLSLETLDLSNNNFY-GQL----FPNFMNLTHLSSLRLNNNHFS-GKMADGLLSSTLLDVLDVSNN 360 (487)
Q Consensus 288 ~~~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 360 (487)
...... -.+.-.+|+.|+.+.+++|... +.. ...-..+..++.+.+++++.. ....+.+..++.|+.+++.+|
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 432111 1122245677777777776532 221 112234567788888888654 344556667788888888888
Q ss_pred cc-CC-CchhhhcccccccEEe
Q 036411 361 KL-SG-DIPHWIGNFSVLWLLL 380 (487)
Q Consensus 361 ~~-~~-~~~~~~~~~~~L~~L~ 380 (487)
+- +. .+...-.++|+++..-
T Consensus 437 q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 437 QDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhHHHHhhCccceehh
Confidence 53 22 2333445566665543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=9.5e-10 Score=112.17 Aligned_cols=271 Identities=22% Similarity=0.173 Sum_probs=145.9
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCcc--ccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccE
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNK--IEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKV 85 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 85 (487)
...|...+-++.+... +. -..+++|++|-+.++. +. .+..+.|..+|.|+.||+++|.-...+|..++++-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~-~~-~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AG-SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhc-cC-CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 3445555555543222 11 1344578888887774 33 344455778888888888877665578888888888888
Q ss_pred EeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCC-CccccccccccCCCCCceeeccc
Q 036411 86 LDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGN-DMLQVKTENWLPTYPLKVLQLSH 164 (487)
Q Consensus 86 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~ 164 (487)
|+++++.+. .+|..+.++++|.+|++..+...... ......+++||++.+.... ..+.........+.+|+.+.+..
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 888888887 67888888888888888876543332 4556668888888875543 22222222233333444444432
Q ss_pred ccccccccccccCCccc----EEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCC----CCcC-CCCCcEEEc
Q 036411 165 CHLNVNSSFLLHQHHLK----FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRL----PNAK-YDKLRHLDI 235 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~~L~~L~l 235 (487)
... ....-+....+|. .+.+.++... ........+.+|+.|.+.++.+....... .... ++++..+.+
T Consensus 678 ~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~--~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR--TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh-HhHhhhhhhHHHHHHhHhhhhcccccc--eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 221 0111112223332 2222222221 11111235678888888877765322110 0011 334444444
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEeccccc
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN 288 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 288 (487)
.++..... +. +...+++|+.|.+.+|............+..+..+.+..+.
T Consensus 755 ~~~~~~r~-l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 755 LNCHMLRD-LT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK 805 (889)
T ss_pred hccccccc-cc-hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc
Confidence 44432211 11 11235788888888877654444444445445443443333
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.4e-08 Score=101.38 Aligned_cols=108 Identities=26% Similarity=0.323 Sum_probs=58.5
Q ss_pred ccEEecCCccccCcchhhhccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCC
Q 036411 376 LWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454 (487)
Q Consensus 376 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 454 (487)
++.|+++++.+.+..|..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|++.+.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555555555555555555555555555554 2333444555555555555555555555555556666666666
Q ss_pred CcccccCccccccc-CceeEEeccCCccCC
Q 036411 455 NKFFGRIPHQINEL-SNLHFLLLRGNSLQG 483 (487)
Q Consensus 455 ~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 483 (487)
|.+++.+|..+... .++..+++.+|+..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 66555555555442 344555555555333
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=9.7e-09 Score=104.92 Aligned_cols=204 Identities=25% Similarity=0.245 Sum_probs=129.7
Q ss_pred cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCc--cCCCcchhccCCCCccEEeccCccccCCccccccCCCC
Q 036411 29 NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN--FEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTS 106 (487)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 106 (487)
......+...+.++.+.... .-..+++|+.|-+..+. +.......|..+|.|..||+++|.--..+|..++.+-+
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred cchhheeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 34467788888888775221 23456789999988885 55455566888999999999998655579999999999
Q ss_pred CcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCC
Q 036411 107 LEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLS 186 (487)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 186 (487)
||+|+++++.+. ..+..++++..|.+|++......... ......+++|++|.+...........+....+|+.|..-
T Consensus 597 LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 597 LRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhcccccCCCcc--ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 999999999886 56788999999999999776554444 444555789999998776532222223333344444332
Q ss_pred CCcccCC-cchHhhhcCCCCc----EEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 187 HNQLVGN-FPTWLLQNNTGLE----VLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
.+..... +...+ ..++.|. .+.+.++..... ......+.+|+.|.+..+.+.
T Consensus 674 s~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 674 SITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred eeecchhHhHhhh-hhhHHHHHHhHhhhhccccccee--ecccccccCcceEEEEcCCCc
Confidence 2222211 11111 1233333 222222211111 113366777888888887665
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.3e-10 Score=94.19 Aligned_cols=198 Identities=20% Similarity=0.153 Sum_probs=138.5
Q ss_pred ccccEEecCCcccccc-ccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcc--hhccCCCCcc
Q 036411 8 KQLKILNLGFNFFIDS-ILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLP--QCLNNLTHLK 84 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 84 (487)
+.|+.+||++..+... ....++.|.+|+.|.+.+..+.+-+. ..+..-.+|+.|+++.|....+.. -.+.+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4588899997765433 34457889999999999988865443 347777999999999886543322 2367899999
Q ss_pred EEeccCccccC-CccccccC-CCCCcEEeccccc--cCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCcee
Q 036411 85 VLDISYNQLSG-NFPSVLTN-LTSLEYLDLSFID--FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVL 160 (487)
Q Consensus 85 ~L~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 160 (487)
.|++++|.... .....+.+ -++|..|+++++. +.........+++|++-+|+++++..++......+...+-|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999997642 22222222 3678899998873 33344455667999999999999888877767778888899999
Q ss_pred ecccccc--cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcE
Q 036411 161 QLSHCHL--NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEV 207 (487)
Q Consensus 161 ~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 207 (487)
+++.|.. ..-...+...|.|.+|++.++--. ...+.+.+.+++++.
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd-t~mel~~e~~~~lki 391 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD-TTMELLKEMLSHLKI 391 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccccCc-hHHHHHHHhCccccc
Confidence 9998864 111123556789999999877432 344445556676654
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=1.2e-09 Score=101.01 Aligned_cols=149 Identities=30% Similarity=0.371 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
.|+.+.++.|.+. ..+..+.++..|++++++.|++. .+|..++ .--|+.|-+++|.++ ..++.+...+.|..|+.
T Consensus 99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhh
Confidence 3444444444443 33334444444444444444444 4444332 123444444444443 23333333444444444
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+.|.+. ..+..+.++.+|+.|.+..|.+. -.|..+. .-.|..||++.|++. .+|.+|.++..|+.|.|++|++.
T Consensus 174 s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 444443 23333333444444444444333 1222222 222333444444443 34444444444444444444443
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.3e-08 Score=67.78 Aligned_cols=60 Identities=38% Similarity=0.562 Sum_probs=31.6
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCcc
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQ 92 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 92 (487)
|+|++|++++|.+. .+.++.|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554 2233455555555555555555554444455555555555555553
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.6e-09 Score=101.92 Aligned_cols=219 Identities=27% Similarity=0.246 Sum_probs=116.9
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
.+++.+++.+|.+... ...+..+++|+.|++++|.+. .+.. +..++.|+.|++.+|.+.. ...+..++.|+.++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence 4566666666665422 111455666666666666665 3333 2334556666666666643 23344456666666
Q ss_pred cCCCccccccc-ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCc--CCcEEeccCCc
Q 036411 333 LNNNHFSGKMA-DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLE--SLEFIDISENG 409 (487)
Q Consensus 333 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~ 409 (487)
+.+|.+..... . ...+.+++.+++.++.+... ..+..+..+..+++..+.++...+ +...+ +|+.+++.+++
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 66666543222 1 34556667777777665422 222223333333555555442111 11112 36777777777
Q ss_pred cccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc---cCcc-cccccCceeEEeccCCccCCC
Q 036411 410 LSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG---RIPH-QINELSNLHFLLLRGNSLQGR 484 (487)
Q Consensus 410 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~-~l~~l~~L~~L~l~~~~~~~~ 484 (487)
+......+..+.++..+++.++.+.... .+.....+..+....+++.. .... .....++++.+++.++|+...
T Consensus 244 i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 ISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 6533355556677777777777766432 23334556666666666531 1111 145667777777777776654
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=2.7e-09 Score=101.58 Aligned_cols=128 Identities=26% Similarity=0.213 Sum_probs=101.5
Q ss_pred CcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccccc-CCCcceEEEe
Q 036411 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLS-NLSSVKHIYL 428 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l 428 (487)
-.|...+.+.|.++ .....+.-++.++.|+++.|+++.. ..+..|++|+.|||++|.++..+..-. .|. |..|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 36777788888876 6667788899999999999998743 267789999999999999864333322 444 999999
Q ss_pred eCcccCCcchHhhhccCcceEEeCCCCcccc-cCcccccccCceeEEeccCCccCC
Q 036411 429 HNNAINGLIPIALLRSSTLLTLDLRDNKFFG-RIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
++|.++.. ..++++++|+.||+++|-+.+ .-.+.+..+..|+.|++.|||+-.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 99999865 356788999999999998742 334577889999999999999753
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1.3e-07 Score=94.63 Aligned_cols=106 Identities=31% Similarity=0.518 Sum_probs=58.7
Q ss_pred CcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCC
Q 036411 304 LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 383 (487)
++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555555555555555555555566666655555555555555555566666666655555555555555666666655
Q ss_pred ccccCcchhhhccC-cCCcEEeccCCc
Q 036411 384 NYLQGSIPVQLGNL-ESLEFIDISENG 409 (487)
Q Consensus 384 ~~~~~~~~~~~~~~-~~L~~l~l~~~~ 409 (487)
|.+.+..|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555544332 234445555544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=1.2e-08 Score=97.53 Aligned_cols=217 Identities=28% Similarity=0.353 Sum_probs=149.6
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+..++.+.++.+.+.. ....+..+++++.+++.+|.+. .+... +..+++|++|++++|.+.. ...+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc--ccchhhccchhhh
Confidence 3456666677776653 2334677889999999999987 55442 3668899999999999865 3455677779999
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCch-hhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIP-HWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++.+|.+.. ...+..+..|+.+++++|+++..-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++.++.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 999999863 2334447889999999998874433 2 57788888899998877532 2223333444447777776
Q ss_pred ccccccccCCCc--ceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 411 SVSMVSLSNLSS--VKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 411 ~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
. ....+...+. |+.+++.++.+... +..+..+..+..+++.++.+. ..+.+...+.+..+....+++.
T Consensus 221 ~-~~~~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 S-KLEGLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS--NLEGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred e-eccCcccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc--ccccccccchHHHhccCcchhc
Confidence 5 2233333333 88999999988854 245667788899999988874 2345666777777777777654
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=3.4e-08 Score=84.24 Aligned_cols=112 Identities=26% Similarity=0.285 Sum_probs=80.9
Q ss_pred cCCCCCcEEEccCccccCCcccccc-cCCCCCcEEECCCCccCC--CcchhccCCCCccEEeccCccccCCccccccCCC
Q 036411 29 NTLTSLTTLNLRYNKIEGSRTKQGI-CNLKNLLELDLSSNNFEG--HLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLT 105 (487)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 105 (487)
+....++.|.+.++.|........| ..+..++++|+.+|.+++ ++...++++|.|+.|+++.|.+...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 3344566777777777644333333 457899999999999863 4555678999999999999987643322213567
Q ss_pred CCcEEeccccccCcchhHHHhhccccceEEEeccC
Q 036411 106 SLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG 140 (487)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 140 (487)
+|+.|.+.++.+........+..+|.++++.++.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 89999999998887777778888888888776554
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=7.8e-08 Score=82.11 Aligned_cols=220 Identities=20% Similarity=0.156 Sum_probs=141.6
Q ss_pred ceEEEEccCCCCCCCcch--hhhccccCcEEecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCcc
Q 036411 254 KLIYLDVSKNSFEGNIPY--SISEMKELITLDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 329 (487)
.++-+.+.++.+...... .-..++.++++++.+|.++ ... ..+++++|.|+.|+++.|++...+...-....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 455677788877643322 2345788999999999987 443 24568899999999999988643322224567899
Q ss_pred EEEcCCCccc-ccccccccCCCcccEEEccCCccCC--Cchhhhcc-cccccEEecCCccccCcchh---hhccCcCCcE
Q 036411 330 SLRLNNNHFS-GKMADGLLSSTLLDVLDVSNNKLSG--DIPHWIGN-FSVLWLLLMSENYLQGSIPV---QLGNLESLEF 402 (487)
Q Consensus 330 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~ 402 (487)
.|.+.+..+. ..........|.+++++++.|.... ....+... -+.+++++...|... .... ...-+|++..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchh
Confidence 9999998765 2333445567888999988884321 11222222 246666776666432 1110 1123578888
Q ss_pred EeccCCcccc--ccccccCCCcceEEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccCcc------cccccCceeE
Q 036411 403 IDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIPH------QINELSNLHF 473 (487)
Q Consensus 403 l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~ 473 (487)
+-+..|+++. ...+...+|.+..|.+..+++.+... .++..+++|.-|.++++++.+.+-. .++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 8888887742 22333466777788888888876432 3566778888888888887543332 3456777777
Q ss_pred Ee
Q 036411 474 LL 475 (487)
Q Consensus 474 L~ 475 (487)
|+
T Consensus 284 LN 285 (418)
T KOG2982|consen 284 LN 285 (418)
T ss_pred ec
Confidence 65
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=3.1e-07 Score=77.51 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCCceeeccccccc------ccccccccCCcccEEeCCCCcccCCcchHhhhc---CCCCcEEEcccCCCCCCCCC----
Q 036411 155 YPLKVLQLSHCHLN------VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQN---NTGLEVLILWNNSFSGILPR---- 221 (487)
Q Consensus 155 ~~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~---- 221 (487)
..|+.+.+..|.+. .....+..+.+|+.|++..|.++-.....+... -+.|+.|.+..|-.......
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 45666666666551 111234456677777777776653333322222 23456666666654432211
Q ss_pred -CCCcCCCCCcEEEccCCcc
Q 036411 222 -LPNAKYDKLRHLDISTNNF 240 (487)
Q Consensus 222 -~~~~~~~~L~~L~l~~~~~ 240 (487)
..-...|+|..|...++..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HhhhhcCCCccccccchhhh
Confidence 1112346666776666644
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=6.1e-07 Score=75.78 Aligned_cols=184 Identities=20% Similarity=0.205 Sum_probs=88.5
Q ss_pred cCCCCCcEEECCCCccCCCCCcC----CcCCCCccEEEcCCCcccccc-------------cccccCCCcccEEEccCCc
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPN----FMNLTHLSSLRLNNNHFSGKM-------------ADGLLSSTLLDVLDVSNNK 361 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~ 361 (487)
-+||+|+..++++|-+....++. +.....|.+|.+++|.+.... .+-...-|.|+.+.+..|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34555566666555543322222 233455555555555443111 1122345677777777776
Q ss_pred cCCCch----hhhcccccccEEecCCccccCcc-----hhhhccCcCCcEEeccCCcccc-----ccccccCCCcceEEE
Q 036411 362 LSGDIP----HWIGNFSVLWLLLMSENYLQGSI-----PVQLGNLESLEFIDISENGLSV-----SMVSLSNLSSVKHIY 427 (487)
Q Consensus 362 ~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~ 427 (487)
+..... ..+..=.+|+++-+..|.+.-.. ...+..+++|+.|++.+|.++. ....+..-+.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 643221 12222246666666666543211 1123456667777777666531 112222334466666
Q ss_pred eeCcccCCcchHh-hh-----ccCcceEEeCCCCcccc------cCcccc-cccCceeEEeccCCccC
Q 036411 428 LHNNAINGLIPIA-LL-----RSSTLLTLDLRDNKFFG------RIPHQI-NELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 428 l~~~~~~~~~~~~-~~-----~~~~L~~L~l~~~~~~~------~~~~~l-~~l~~L~~L~l~~~~~~ 482 (487)
+.+|-++...... +. ..++|..|-..+|.+.+ ..+.+. ..+|-|..|.+.||+|.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 6666655432211 11 13566666666665421 122222 24566666666666654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=1.2e-07 Score=90.78 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=97.5
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
..|...+.++|.+. .....+.-++.++.|+++.|++++. +.+..|+.|++||++.|.+..........|. |+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 35666777777765 5556666778999999999998743 4788999999999999988743333334444 999999
Q ss_pred cCCccccccccccCCCcceEEEeeCcccCCcc-hHhhhccCcceEEeCCCCcc
Q 036411 406 SENGLSVSMVSLSNLSSVKHIYLHNNAINGLI-PIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 457 (487)
++|.++ ...++.++.+|+.||++.|-+...- -..+..+..|+.|+|-||++
T Consensus 240 rnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999887 5556668899999999999877532 23456678899999999998
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=8.9e-07 Score=88.46 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=91.6
Q ss_pred ccccEEecCCccc-cccccccc-cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccE
Q 036411 8 KQLKILNLGFNFF-IDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKV 85 (487)
Q Consensus 8 ~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 85 (487)
.+|+.|+++|... ...-+..+ ..+|.|++|.+.+-.+..........++|+|..||+|++.+.+. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4678888877532 22122222 45788888888887665333334467788888888888888754 66788888888
Q ss_pred EeccCccccC-CccccccCCCCCcEEeccccccCcch-----hHHHhhccccceEEEeccCCCccccccccccCCCCCce
Q 036411 86 LDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTF-----LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKV 159 (487)
Q Consensus 86 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 159 (487)
|.+++-.+.. ..-..+..+++|+.||+|........ ..+.-..+|+||.|+.++..-............++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887765542 11224456888888888876533222 12334456777777776544333333333344444444
Q ss_pred ee
Q 036411 160 LQ 161 (487)
Q Consensus 160 L~ 161 (487)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.13 E-value=7.7e-07 Score=88.89 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=28.8
Q ss_pred cCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEccc
Q 036411 176 HQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN 212 (487)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (487)
.+|+|+.||.+++.+...+.+.+....|+|+.+..-+
T Consensus 248 ~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 4789999999998888777777777778887776544
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.09 E-value=7.5e-06 Score=64.39 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=28.4
Q ss_pred hhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcc
Q 036411 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLL 352 (487)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 352 (487)
+.++++|+.+.+.+ .+. .++...|.++++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..++.|
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44444455555442 232 444444444444555554442 3222333344444444444433 2221223333344444
Q ss_pred cEEEcc
Q 036411 353 DVLDVS 358 (487)
Q Consensus 353 ~~L~l~ 358 (487)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.05 E-value=1.1e-05 Score=63.44 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=50.2
Q ss_pred ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcc
Q 036411 344 DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSV 423 (487)
Q Consensus 344 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 423 (487)
.+|.++.+|+.+.+.. .+.......|..+++++.+.+.++ +.......|..+++++.+.+.++-.......+..+++|
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTE
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccc
Confidence 3444555566655553 233334445556656666666553 33333445556666666666553323334444456666
Q ss_pred eEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCcee
Q 036411 424 KHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLH 472 (487)
Q Consensus 424 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 472 (487)
+.+++..+ +......++.++ +|+.+.+.+ .+......+|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 66666543 444445556665 677776664 33344445666666553
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.5e-05 Score=64.62 Aligned_cols=85 Identities=24% Similarity=0.180 Sum_probs=38.3
Q ss_pred hccCcCCcEEeccCCcccccccccc-CCCcceEEEeeCcccCCcch-HhhhccCcceEEeCCCCcccc---cCccccccc
Q 036411 394 LGNLESLEFIDISENGLSVSMVSLS-NLSSVKHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFG---RIPHQINEL 468 (487)
Q Consensus 394 ~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~l 468 (487)
|+.++.|.+|.+.+|+++.+.+.+. .+|+|+.|.+.+|++..... ..+..|+.|+.|.+-+|+++. .-..++..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3444445555555555443333333 33445555555554432211 223445555555555555431 111244555
Q ss_pred CceeEEeccC
Q 036411 469 SNLHFLLLRG 478 (487)
Q Consensus 469 ~~L~~L~l~~ 478 (487)
|+|+.||.++
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 5555555543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=1.9e-05 Score=63.99 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=77.8
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCC-CcCCcCCCCcc
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL-FPNFMNLTHLS 329 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 329 (487)
...+...+++++|.+. ....++.++.|.+|.+++|.++ .+...+-.-+++|+.|.+.+|.+.+.. ...++.+|.|+
T Consensus 40 ~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 3456778888888875 3346788889999999999998 777666566788999999998875322 34567788888
Q ss_pred EEEcCCCcccccc---cccccCCCcccEEEccCC
Q 036411 330 SLRLNNNHFSGKM---ADGLLSSTLLDVLDVSNN 360 (487)
Q Consensus 330 ~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~ 360 (487)
.|.+.+|++.... ...+...++|+.||+.+-
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888888876322 234456677777777654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=1.2e-06 Score=66.14 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=69.1
Q ss_pred EEEcCCCccc--ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccC
Q 036411 330 SLRLNNNHFS--GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407 (487)
Q Consensus 330 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 407 (487)
.++++.|++. ......+.....|+.+++++|.+.+.-+..-...+.++.+++++|.++ ..|..++.++.|+.++++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccccc
Confidence 3445555543 122223344556777777777776555555556667777788877777 5666677777888888888
Q ss_pred CccccccccccCCCcceEEEeeCcccCCc
Q 036411 408 NGLSVSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 408 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
|++...+..+..+.++..|+..+|....+
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccccC
Confidence 87776666666677777777777765543
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=5.4e-06 Score=81.74 Aligned_cols=226 Identities=22% Similarity=0.084 Sum_probs=101.3
Q ss_pred CCCCCcEEEccCcc-ccCCcccccccCCCCCcEEECCCC-ccCCCc----chhccCCCCccEEeccCcc-ccCCcccccc
Q 036411 30 TLTSLTTLNLRYNK-IEGSRTKQGICNLKNLLELDLSSN-NFEGHL----PQCLNNLTHLKVLDISYNQ-LSGNFPSVLT 102 (487)
Q Consensus 30 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~ 102 (487)
.++.|+.|.+.++. +...........+++|++|+++++ ...... ......+++|+.++++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35566666665553 221112233455666666666552 111011 1122345566666666655 4433333332
Q ss_pred -CCCCCcEEeccccc-cCcchhHHHhhccccceEEEeccCCCcccccc-ccccCCCCCceeecccc--------------
Q 036411 103 -NLTSLEYLDLSFID-FQGTFLINSLANHSKLEVLVLSSGNDMLQVKT-ENWLPTYPLKVLQLSHC-------------- 165 (487)
Q Consensus 103 -~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~-------------- 165 (487)
.|++|+.|.+.+|. ++..........+++|+++++.++..+..... .....+++++.+.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 25666666655554 45555555555666666666665554422111 11122333333332221
Q ss_pred cc----cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 166 HL----NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 166 ~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
.. .........+++++.+.+..+...+........+|+.++ ..+.... .....++.|.+..+...
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~----------~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL----------CRSDSLRVLNLSDCRLV 414 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh----------ccCCccceEecccCccc
Confidence 11 111123344566666666666533222234445555552 2211110 11122677888777543
Q ss_pred cc-CCcccccccCceEEEEccCCCCC
Q 036411 242 GK-LPENLGIVFQKLIYLDVSKNSFE 266 (487)
Q Consensus 242 ~~-~~~~~~~~~~~L~~L~l~~~~~~ 266 (487)
.. ........+..++.+++.++...
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccc
Confidence 11 11111111456777777777643
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.4e-05 Score=46.80 Aligned_cols=36 Identities=50% Similarity=0.706 Sum_probs=14.7
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCcccc
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLS 94 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 94 (487)
+|++|++++|++. .++..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.74 E-value=7.9e-06 Score=80.58 Aligned_cols=248 Identities=20% Similarity=0.108 Sum_probs=140.6
Q ss_pred CCCcEEEccCcc--ccCCcccccccCCCCCcEEECCCCccCCC--cchhccCCCCccEEeccCc-c-ccC---Ccccccc
Q 036411 32 TSLTTLNLRYNK--IEGSRTKQGICNLKNLLELDLSSNNFEGH--LPQCLNNLTHLKVLDISYN-Q-LSG---NFPSVLT 102 (487)
Q Consensus 32 ~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~-~~~---~~~~~~~ 102 (487)
..++.+....+. ............++.|+.+.+..+.-... .......+++|+.|+++++ . +.. .......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 345555554443 22112222345589999999998855433 3455678999999999873 2 221 1123445
Q ss_pred CCCCCcEEeccccc-cCcchhHHHhhccccceEEEeccCCCccccccc-cccCCCCCceeeccccccc---ccccccccC
Q 036411 103 NLTSLEYLDLSFID-FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE-NWLPTYPLKVLQLSHCHLN---VNSSFLLHQ 177 (487)
Q Consensus 103 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~ 177 (487)
.+++|+.++++++. ++..........+++|+.+.+..|..++..... ....++.|++|+++.|... .+......+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 68999999999988 554444445556999999998778765444433 3356678999999988761 233334456
Q ss_pred CcccEEeCCCCc----cc------------CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 178 HHLKFLDLSHNQ----LV------------GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 178 ~~L~~L~l~~~~----~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
++++.+.+.... ++ +.........+++++.+.+..+.............++.+. ..+..+
T Consensus 321 ~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~--- 396 (482)
T KOG1947|consen 321 PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR--- 396 (482)
T ss_pred cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---
Confidence 766665544332 11 1222233445666666666665522222112233444442 111111
Q ss_pred ccCCcccccccCceEEEEccCCCCCC-Ccchhhhc-cccCcEEecccccCC
Q 036411 242 GKLPENLGIVFQKLIYLDVSKNSFEG-NIPYSISE-MKELITLDLSRNNFS 290 (487)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~ 290 (487)
......++.|+++.+.... ........ +..++.+++.++...
T Consensus 397 -------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 397 -------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred -------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 0011227899998886432 22222222 666777888777654
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00016 Score=66.86 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=87.4
Q ss_pred cCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccE
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 378 (487)
..+.+++.|++++|.+... + . -..+|++|.+.+|.-....+..+ .++|+.|++++|.-...+| ++|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 4478999999999977643 3 2 23579999999876544555444 3689999999994322344 45777
Q ss_pred EecCCccccCcchhhhccC-cCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCc
Q 036411 379 LLMSENYLQGSIPVQLGNL-ESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 379 L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
|.+.++.... +..+ ++|+.|.+.++.-. .....-.-.++|++|++.+|.... .|..+. .+|+.|.++.+.
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEecccc
Confidence 7777654331 1222 46778877543311 000000123689999999988664 344444 689999998764
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=4.4e-05 Score=46.29 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=18.0
Q ss_pred cceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 422 SVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+|++|++++|++++. +..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555543 223555555555555555553
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=2.5e-06 Score=64.42 Aligned_cols=107 Identities=26% Similarity=0.346 Sum_probs=70.5
Q ss_pred ceEEEEccCCCCCC--CcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 254 KLIYLDVSKNSFEG--NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 254 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
.+..++++.|++.. ...+.+..-..|..+++++|.+. .+|..+-..++.++.+++.+|.+.+ .|.+++.++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhc
Confidence 34556666665431 22344555566777788888777 7777766666777888888777764 44557777888888
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccC
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLS 363 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 363 (487)
+++.|++. ..+..+..+.++..|+..++...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 88887776 44555545666777777777654
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.0004 Score=64.23 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=25.3
Q ss_pred CCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccc
Q 036411 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287 (487)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 287 (487)
+.+++.|++++|.+. .+| ..+++|++|.+++|.-....+..+ .++|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 355556666655444 333 123456666665543322333222 234555555554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=8e-05 Score=63.20 Aligned_cols=111 Identities=22% Similarity=0.170 Sum_probs=76.8
Q ss_pred cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCC--ccCCCcchhccCCCCccEEeccCccccC-Cccccc
Q 036411 25 LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN--NFEGHLPQCLNNLTHLKVLDISYNQLSG-NFPSVL 101 (487)
Q Consensus 25 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~ 101 (487)
..-...+..|+.|++.++.+++. ..|-.+++|++|+++.| .+...+......+|+|+++++++|++.. ..-...
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred ccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 33345567888888887776533 23777889999999999 5655555556678999999999998763 111345
Q ss_pred cCCCCCcEEeccccccCcch--hHHHhhccccceEEEec
Q 036411 102 TNLTSLEYLDLSFIDFQGTF--LINSLANHSKLEVLVLS 138 (487)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l~ 138 (487)
..+++|..|++..|..+... --..+.-+++|++++-.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 56778888899888765422 23466677777777653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=6.3e-06 Score=70.06 Aligned_cols=102 Identities=25% Similarity=0.102 Sum_probs=58.7
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCC-ccccccCCCCCcE
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGN-FPSVLTNLTSLEY 109 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 109 (487)
+.+.++||.++|.+.++.. ...++.|+.|.|+-|+|+.. ..+..|++|++|.+..|.|... -...+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3455666666666653322 45666677777776666543 3356667777777766665522 1124556667777
Q ss_pred EeccccccCcchh----HHHhhccccceEEEe
Q 036411 110 LDLSFIDFQGTFL----INSLANHSKLEVLVL 137 (487)
Q Consensus 110 L~l~~~~~~~~~~----~~~~~~~~~L~~l~l 137 (487)
|++..|...+... ..++..+|+|+.|+-
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 7776655433221 335666677766653
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=6.5e-06 Score=70.00 Aligned_cols=103 Identities=29% Similarity=0.238 Sum_probs=79.0
Q ss_pred ccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCC-cchhccCCCCcc
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH-LPQCLNNLTHLK 84 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 84 (487)
.+.+.+.|+..+|.+.++ +...+++.|++|.|+-|.|++.. .+..|++|++|+|+.|.|.+. ..+.+.++|+|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 356788999999988665 44678999999999999997443 499999999999999998732 224578999999
Q ss_pred EEeccCccccCCcc-----ccccCCCCCcEEecc
Q 036411 85 VLDISYNQLSGNFP-----SVLTNLTSLEYLDLS 113 (487)
Q Consensus 85 ~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~ 113 (487)
.|.+..|.-....+ ..+..+++|++|+=.
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 99998876432222 245567888887643
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00047 Score=58.65 Aligned_cols=109 Identities=22% Similarity=0.191 Sum_probs=74.4
Q ss_pred chhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCC--cccccccccc-CCCcceEEEeeCcccCCc-chHhh
Q 036411 366 IPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN--GLSVSMVSLS-NLSSVKHIYLHNNAINGL-IPIAL 441 (487)
Q Consensus 366 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~ 441 (487)
+....-....|+.+.+.++.++ ....++.+|+|+.|.+++| ..+.....+. .+|+|+++++++|++... .-..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 3333444566677777776654 3356778899999999999 5544444444 669999999999988742 12345
Q ss_pred hccCcceEEeCCCCcccccCc---ccccccCceeEEec
Q 036411 442 LRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLL 476 (487)
Q Consensus 442 ~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l 476 (487)
+.+.+|..|++.+|..+..-- ..|.-+|+|+.|+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 667889999999998765222 25566788887763
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.0024 Score=52.22 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=52.0
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccC-CCcchhcc-CCCCccEEeccCc-cccCCccccccCCCCCc
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFE-GHLPQCLN-NLTHLKVLDISYN-QLSGNFPSVLTNLTSLE 108 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 108 (487)
..++.++-+++.|.. ...+-+.+++.++.|.+.+|.-. +.-.+.++ -.++|+.|++++| .|++.....+.++++|+
T Consensus 101 ~~IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 456667777776642 22344666777777777776532 21222233 2578888888877 47776667777788888
Q ss_pred EEecccc
Q 036411 109 YLDLSFI 115 (487)
Q Consensus 109 ~L~l~~~ 115 (487)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8777653
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.0029 Score=51.79 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=37.3
Q ss_pred CcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccc-cccccccc-CCCcccEEEccCC-ccCCCchhhhcccccccEEe
Q 036411 304 LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS-GKMADGLL-SSTLLDVLDVSNN-KLSGDIPHWIGNFSVLWLLL 380 (487)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 380 (487)
++.++-+++.+..+..+-+..+++++.|.+.+|.-- ....+.+. ..++|+.|++++| +|++....++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444444444444445555555444321 11111111 2355666666666 45555555555555555555
Q ss_pred cCC
Q 036411 381 MSE 383 (487)
Q Consensus 381 l~~ 383 (487)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.01 Score=29.71 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=5.2
Q ss_pred ceEEeCCCCccc
Q 036411 447 LLTLDLRDNKFF 458 (487)
Q Consensus 447 L~~L~l~~~~~~ 458 (487)
|+.|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.38 E-value=0.024 Score=26.20 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=8.1
Q ss_pred CceeEEeccCCccCCCCC
Q 036411 469 SNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 469 ~~L~~L~l~~~~~~~~~p 486 (487)
++|++|++++|++. ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 45677777777743 443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.017 Score=28.88 Aligned_cols=17 Identities=53% Similarity=0.876 Sum_probs=14.5
Q ss_pred ceeEEeccCCccCCCCCC
Q 036411 470 NLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 470 ~L~~L~l~~~~~~~~~p~ 487 (487)
+|++|++++|+++ .+|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp TESEEEETSSEES-EEGT
T ss_pred CccEEECCCCcCE-eCCh
Confidence 5899999999988 6764
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.85 E-value=0.00037 Score=66.96 Aligned_cols=180 Identities=25% Similarity=0.220 Sum_probs=94.3
Q ss_pred CcEEecccccCCCCCch---hhhcCCCCCcEEECCCCccCCCCCcC----CcCC-CCccEEEcCCCcccccc----cccc
Q 036411 279 LITLDLSRNNFSGELPR---SIFSSCLSLETLDLSNNNFYGQLFPN----FMNL-THLSSLRLNNNHFSGKM----ADGL 346 (487)
Q Consensus 279 L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~ 346 (487)
+..+.+.+|.+.+.... ..+...+.|+.+++++|.+.+..... +... ..++.|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777777633221 22345667788888888775332221 2222 44556666666665322 2333
Q ss_pred cCCCcccEEEccCCccCC----Cchhhhc----ccccccEEecCCccccCc----chhhhccCcC-CcEEeccCCccc--
Q 036411 347 LSSTLLDVLDVSNNKLSG----DIPHWIG----NFSVLWLLLMSENYLQGS----IPVQLGNLES-LEFIDISENGLS-- 411 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~l~l~~~~~~-- 411 (487)
...+.++.++++.|.+.. .++..+. ...++++|.++.|.++.. ....+...++ +..+++..|.+-
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445667777777776532 1222222 355666777776665421 1122333344 455666666542
Q ss_pred ---cccccccCC-CcceEEEeeCcccCCcch----HhhhccCcceEEeCCCCccc
Q 036411 412 ---VSMVSLSNL-SSVKHIYLHNNAINGLIP----IALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 412 ---~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 458 (487)
.....+..+ +.++.+++..|.++.... ..+..++.++.+.+++|+++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 122223333 455666666666665332 33344566666666666664
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.24 E-value=0.002 Score=61.97 Aligned_cols=203 Identities=23% Similarity=0.225 Sum_probs=124.7
Q ss_pred eEEEEccCCCCCCC----cchhhhccccCcEEecccccCCCCCchhhh---cCC-CCCcEEECCCCccCCCCC----cCC
Q 036411 255 LIYLDVSKNSFEGN----IPYSISEMKELITLDLSRNNFSGELPRSIF---SSC-LSLETLDLSNNNFYGQLF----PNF 322 (487)
Q Consensus 255 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~~~----~~~ 322 (487)
+..+.+.+|.+.+. ....+...+.|+.|++++|.+.+......- ... ..+++|++..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666665432 223445567777777877777633222221 111 356677777787764332 234
Q ss_pred cCCCCccEEEcCCCccccc----cccc----ccCCCcccEEEccCCccCCCc----hhhhccccc-ccEEecCCccccCc
Q 036411 323 MNLTHLSSLRLNNNHFSGK----MADG----LLSSTLLDVLDVSNNKLSGDI----PHWIGNFSV-LWLLLMSENYLQGS 389 (487)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~----~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~ 389 (487)
.....++.+++..|.+... .... +....++++|+++.|.++... ...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4567888888888877411 1222 234678999999999876422 223344455 67789999887643
Q ss_pred c----hhhhccC-cCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCcch----HhhhccCcceEEeCCCC
Q 036411 390 I----PVQLGNL-ESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGLIP----IALLRSSTLLTLDLRDN 455 (487)
Q Consensus 390 ~----~~~~~~~-~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~ 455 (487)
. ...+... ++++.+++.+|.+. .....+..++.++++.+..|.+..... +.......+..+-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 2 2234445 67899999999884 344555578899999999999875322 22333455666666655
Q ss_pred cc
Q 036411 456 KF 457 (487)
Q Consensus 456 ~~ 457 (487)
..
T Consensus 329 ~~ 330 (478)
T KOG4308|consen 329 GK 330 (478)
T ss_pred Cc
Confidence 43
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.90 E-value=0.051 Score=27.78 Aligned_cols=12 Identities=50% Similarity=0.700 Sum_probs=4.5
Q ss_pred cceEEeCCCCcc
Q 036411 446 TLLTLDLRDNKF 457 (487)
Q Consensus 446 ~L~~L~l~~~~~ 457 (487)
+|+.|+|++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.48 E-value=0.34 Score=25.18 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=14.0
Q ss_pred ccCcEEecccccCCCCCchhhhc
Q 036411 277 KELITLDLSRNNFSGELPRSIFS 299 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~ 299 (487)
++|+.|++++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666777777666 66666553
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.48 E-value=0.34 Score=25.18 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=14.0
Q ss_pred ccCcEEecccccCCCCCchhhhc
Q 036411 277 KELITLDLSRNNFSGELPRSIFS 299 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~ 299 (487)
++|+.|++++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666777777666 66666553
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.91 E-value=0.46 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=7.0
Q ss_pred cceEEEeeCcccCCc
Q 036411 422 SVKHIYLHNNAINGL 436 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~ 436 (487)
+|+.|++.+|.+..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.91 E-value=0.46 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=7.0
Q ss_pred cceEEEeeCcccCCc
Q 036411 422 SVKHIYLHNNAINGL 436 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~ 436 (487)
+|+.|++.+|.+..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444443
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.15 E-value=0.61 Score=24.23 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=5.9
Q ss_pred ceeEEeccCCccC
Q 036411 470 NLHFLLLRGNSLQ 482 (487)
Q Consensus 470 ~L~~L~l~~~~~~ 482 (487)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444433
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.89 E-value=2.6 Score=22.01 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=8.1
Q ss_pred CceeEEeccCCccC
Q 036411 469 SNLHFLLLRGNSLQ 482 (487)
Q Consensus 469 ~~L~~L~l~~~~~~ 482 (487)
.+|++|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.28 E-value=0.16 Score=42.84 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=46.5
Q ss_pred CCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEe
Q 036411 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYL 428 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 428 (487)
....+.||++.+++. -....++-++.+..++++.+.+. ..|..+.....+..++...|.....+.++...|.+++++.
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 344555555555543 22233444555555666665555 4555555555555555656655556666666666666666
Q ss_pred eCcccC
Q 036411 429 HNNAIN 434 (487)
Q Consensus 429 ~~~~~~ 434 (487)
.++.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666543
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=71.14 E-value=2.9 Score=21.63 Aligned_cols=13 Identities=38% Similarity=0.347 Sum_probs=7.6
Q ss_pred cCceeEEeccCCc
Q 036411 468 LSNLHFLLLRGNS 480 (487)
Q Consensus 468 l~~L~~L~l~~~~ 480 (487)
+|+|+.|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3556666666665
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.22 E-value=3.9 Score=21.68 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=7.8
Q ss_pred CceeEEeccCCcc
Q 036411 469 SNLHFLLLRGNSL 481 (487)
Q Consensus 469 ~~L~~L~l~~~~~ 481 (487)
++|+.|+|++|++
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566666666655
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=65.37 E-value=0.36 Score=40.87 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=40.5
Q ss_pred cCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEe
Q 036411 396 NLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLL 475 (487)
Q Consensus 396 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 475 (487)
.....+.||++.+++...-.-+..+..+..++++.|.+.. .|..+.....++.+++.+|... -.|..++..|.++.++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3344444555555443333333344445555555555442 2334444444555555555443 3455555555555555
Q ss_pred ccCCcc
Q 036411 476 LRGNSL 481 (487)
Q Consensus 476 l~~~~~ 481 (487)
..++++
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555553
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.93 E-value=6.9 Score=38.01 Aligned_cols=62 Identities=21% Similarity=0.153 Sum_probs=37.9
Q ss_pred ccCcCCcEEeccCCcccc---ccccccCCCcceEEEeeCc--ccCCcchHhhh--ccCcceEEeCCCCccc
Q 036411 395 GNLESLEFIDISENGLSV---SMVSLSNLSSVKHIYLHNN--AINGLIPIALL--RSSTLLTLDLRDNKFF 458 (487)
Q Consensus 395 ~~~~~L~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 458 (487)
.+.|.+..+.+++|++.. ....-...|+|+.|+|++| .+... ..+. ...-|++|-+.||++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccc
Confidence 456778888888888741 1111125678888888888 33322 2222 2355788888888873
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.28 E-value=9.1 Score=37.20 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=51.5
Q ss_pred cccccccEEecCCccccCcc--hhhhccCcCCcEEeccCC--cccccccccc-CCCcceEEEeeCcccCCcch---Hhh-
Q 036411 371 GNFSVLWLLLMSENYLQGSI--PVQLGNLESLEFIDISEN--GLSVSMVSLS-NLSSVKHIYLHNNAINGLIP---IAL- 441 (487)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~---~~~- 441 (487)
.+.+.+..+++++|++.... ......-|+|+.|+|++| .+....+.-. ....|++|.+.||++.+... +.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 34577888999999875321 122345689999999999 3321111111 34558999999999875321 111
Q ss_pred ---hccCcceEEeCCCCcc
Q 036411 442 ---LRSSTLLTLDLRDNKF 457 (487)
Q Consensus 442 ---~~~~~L~~L~l~~~~~ 457 (487)
..+|.|..|| |..+
T Consensus 295 ~i~~~FPKL~~LD--G~ev 311 (585)
T KOG3763|consen 295 AIRELFPKLLRLD--GVEV 311 (585)
T ss_pred HHHHhcchheeec--Cccc
Confidence 2456666664 4444
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.59 E-value=1.7e+02 Score=28.39 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=10.3
Q ss_pred CCCCcEEEccCccccCC
Q 036411 31 LTSLTTLNLRYNKIEGS 47 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~ 47 (487)
.+.+++++++.+.+.+.
T Consensus 164 npr~r~~dls~npi~dk 180 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDK 180 (553)
T ss_pred cchhhhhccCCCccccc
Confidence 45666677766666543
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.18 E-value=1e+02 Score=18.31 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=2.8
Q ss_pred cceEEEe
Q 036411 422 SVKHIYL 428 (487)
Q Consensus 422 ~L~~L~l 428 (487)
+++.|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3344444
Done!