Query 036411
Match_columns 487
No_of_seqs 206 out of 2535
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 21:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-53 7.9E-58 436.7 35.3 477 3-487 121-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-51 3.7E-56 424.3 36.0 479 2-487 94-698 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1E-48 3.5E-53 393.9 37.9 468 9-485 34-563 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.4E-47 4.8E-52 385.7 39.2 451 2-460 51-562 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-47 1.3E-51 387.6 41.3 475 3-483 44-598 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-47 4.1E-52 386.2 29.1 463 8-486 32-562 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-46 1.1E-50 380.6 39.1 479 3-485 68-625 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-47 1.8E-51 381.5 32.3 441 2-459 50-559 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 1.8E-45 6E-50 368.1 31.7 467 8-487 28-536 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-44 4.3E-49 375.7 31.5 465 7-486 23-543 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-44 1.2E-48 356.7 30.2 467 8-486 26-514 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 7.4E-42 2.5E-46 354.9 30.3 463 2-485 42-563 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.4E-41 8.3E-46 338.1 29.5 445 2-462 46-535 (570)
14 2z7x_B TOLL-like receptor 1, v 100.0 4.9E-42 1.7E-46 338.8 23.7 455 11-485 3-484 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-40 1.6E-44 327.1 30.7 448 2-462 44-514 (549)
16 4eco_A Uncharacterized protein 100.0 8.1E-40 2.8E-44 328.6 28.3 415 8-434 81-600 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-39 6.3E-44 320.3 27.0 437 8-460 21-483 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 7.9E-39 2.7E-43 326.3 32.1 437 8-457 323-863 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 7.4E-38 2.5E-42 317.3 33.1 470 9-484 53-582 (635)
20 4eco_A Uncharacterized protein 100.0 1.5E-38 5.1E-43 319.4 26.6 430 32-482 81-600 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.4E-39 2.2E-43 318.9 23.0 458 7-485 30-513 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 3.4E-37 1.2E-41 314.3 27.2 421 32-467 323-849 (876)
23 3v47_A TOLL-like receptor 5B a 100.0 7.4E-36 2.5E-40 289.7 26.5 367 57-486 30-412 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5E-36 1.7E-40 298.1 25.9 439 8-460 52-512 (562)
25 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-34 1.6E-38 289.3 34.4 443 2-458 70-580 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 7.2E-35 2.5E-39 282.8 26.5 362 8-411 30-408 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.2E-33 4.1E-38 271.5 25.1 394 6-486 9-433 (454)
28 1o6v_A Internalin A; bacterial 100.0 1.7E-32 5.8E-37 266.1 33.0 346 31-436 45-390 (466)
29 1o6v_A Internalin A; bacterial 100.0 4.2E-32 1.4E-36 263.4 33.0 347 6-413 44-390 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 9.3E-33 3.2E-37 265.3 24.8 376 31-487 10-416 (454)
31 2id5_A Lingo-1, leucine rich r 100.0 1.2E-32 4E-37 268.6 23.4 300 155-458 32-333 (477)
32 4fmz_A Internalin; leucine ric 100.0 2.4E-31 8.2E-36 248.4 30.3 305 153-482 42-346 (347)
33 3bz5_A Internalin-J, INLJ; leu 100.0 7.6E-32 2.6E-36 259.2 24.6 357 25-486 35-391 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-31 6.2E-36 256.6 23.7 356 3-439 37-392 (457)
35 4fmz_A Internalin; leucine ric 100.0 7.6E-30 2.6E-34 238.2 30.9 148 252-410 198-345 (347)
36 2id5_A Lingo-1, leucine rich r 100.0 4.1E-31 1.4E-35 257.7 22.6 299 131-434 33-333 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 2.5E-30 8.6E-35 245.2 27.4 310 153-483 43-353 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 6.2E-30 2.1E-34 242.6 23.5 308 57-435 45-353 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2.1E-29 7.2E-34 251.7 27.1 310 153-483 49-359 (597)
40 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-32 9.2E-37 265.2 1.6 381 57-458 3-440 (461)
41 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-31 7.1E-36 259.0 5.2 378 105-482 3-440 (461)
42 3oja_B Anopheles plasmodium-re 100.0 1.4E-28 4.9E-33 245.7 25.8 308 31-387 50-358 (597)
43 1ogq_A PGIP-2, polygalacturona 100.0 6.1E-30 2.1E-34 234.2 14.4 252 228-483 50-306 (313)
44 1xku_A Decorin; proteoglycan, 100.0 1.9E-28 6.6E-33 226.8 24.5 289 179-480 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.3E-33 228.1 21.2 288 179-480 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.5E-27 8.5E-32 219.3 25.7 289 156-456 32-330 (330)
47 1ogq_A PGIP-2, polygalacturona 100.0 3.2E-28 1.1E-32 222.8 15.9 232 253-487 50-286 (313)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-27 8E-32 219.6 21.8 288 156-456 34-331 (332)
49 3ogk_B Coronatine-insensitive 100.0 6.6E-29 2.2E-33 249.2 12.2 322 153-479 190-548 (592)
50 3ogk_B Coronatine-insensitive 100.0 5.3E-30 1.8E-34 257.1 3.0 422 4-431 69-548 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 2.3E-27 7.9E-32 221.6 19.6 257 228-486 52-318 (353)
52 2p1m_B Transport inhibitor res 99.9 2.4E-29 8.1E-34 252.6 1.6 109 346-455 428-541 (594)
53 2z66_A Variable lymphocyte rec 99.9 1.1E-26 3.8E-31 212.6 18.0 246 206-458 10-261 (306)
54 3zyj_A Leucine-rich repeat-con 99.9 5.2E-26 1.8E-30 218.9 20.9 227 253-482 64-292 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 7.7E-26 2.6E-30 218.4 20.6 227 253-482 75-303 (452)
56 2p1m_B Transport inhibitor res 99.9 9.3E-29 3.2E-33 248.2 -0.7 425 3-432 61-542 (594)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-25 3.9E-30 203.5 18.6 250 231-486 14-265 (285)
58 2z66_A Variable lymphocyte rec 99.9 2E-26 6.8E-31 210.9 13.6 281 181-469 10-298 (306)
59 1ozn_A Reticulon 4 receptor; N 99.9 7.1E-26 2.4E-30 204.9 16.8 268 206-480 14-285 (285)
60 2z80_A TOLL-like receptor 2, v 99.9 1.7E-25 5.7E-30 209.0 17.1 273 181-460 34-316 (353)
61 4fcg_A Uncharacterized protein 99.9 2.2E-25 7.5E-30 205.2 17.3 233 228-482 81-314 (328)
62 4fcg_A Uncharacterized protein 99.9 1.4E-25 4.8E-30 206.5 15.4 206 277-487 81-295 (328)
63 3zyj_A Leucine-rich repeat-con 99.9 5.4E-24 1.8E-28 204.8 22.2 246 180-434 45-292 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 5.7E-24 1.9E-28 205.4 22.2 245 181-434 57-303 (452)
65 3o53_A Protein LRIM1, AGAP0063 99.9 6.6E-25 2.2E-29 201.4 14.4 218 251-482 32-250 (317)
66 1wwl_A Monocyte differentiatio 99.9 3.9E-26 1.3E-30 209.1 6.1 245 228-483 43-310 (312)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-23 5.4E-28 207.1 23.7 265 156-466 41-305 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-25 7.9E-30 204.5 6.7 261 179-456 11-273 (317)
69 2z62_A TOLL-like receptor 4, v 99.9 3.3E-23 1.1E-27 186.4 19.4 207 253-460 28-239 (276)
70 3oja_A Leucine-rich immune mol 99.9 8.9E-24 3E-28 204.9 16.5 235 228-477 34-270 (487)
71 2o6q_A Variable lymphocyte rec 99.9 6.7E-23 2.3E-27 183.5 20.9 202 253-458 16-218 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 3.4E-23 1.1E-27 186.4 18.4 208 277-486 28-241 (276)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-22 4.8E-27 200.4 23.2 266 131-443 41-306 (622)
74 3oja_A Leucine-rich immune mol 99.9 3.2E-24 1.1E-28 208.1 10.3 215 254-482 35-250 (487)
75 1wwl_A Monocyte differentiatio 99.9 2.2E-24 7.6E-29 197.4 5.1 202 252-459 94-310 (312)
76 2o6q_A Variable lymphocyte rec 99.9 8.1E-22 2.8E-26 176.5 19.9 203 229-436 17-220 (270)
77 3rfs_A Internalin B, repeat mo 99.9 1.3E-22 4.5E-27 181.8 14.1 207 252-470 40-247 (272)
78 1p9a_G Platelet glycoprotein I 99.9 1.1E-21 3.6E-26 177.1 17.3 199 252-458 9-208 (290)
79 2ca6_A RAN GTPase-activating p 99.9 4.2E-23 1.4E-27 195.2 6.6 233 253-485 32-319 (386)
80 3rfs_A Internalin B, repeat mo 99.9 7.3E-22 2.5E-26 176.9 14.0 221 253-487 19-240 (272)
81 3goz_A Leucine-rich repeat-con 99.9 1E-22 3.5E-27 190.5 7.9 234 227-460 21-299 (362)
82 1h6u_A Internalin H; cell adhe 99.9 4.6E-21 1.6E-25 174.7 18.0 192 252-459 40-231 (308)
83 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5.2E-26 171.5 12.4 197 278-480 32-237 (239)
84 2ast_B S-phase kinase-associat 99.9 3.7E-22 1.3E-26 185.2 8.2 201 228-431 70-282 (336)
85 1p9a_G Platelet glycoprotein I 99.9 1.8E-20 6.1E-25 169.1 18.8 203 225-435 7-209 (290)
86 3m19_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 163.6 17.8 180 277-460 14-194 (251)
87 2ast_B S-phase kinase-associat 99.8 2.8E-21 9.5E-26 179.3 10.5 251 229-487 48-311 (336)
88 4glp_A Monocyte differentiatio 99.8 2.6E-21 8.9E-26 177.0 10.1 201 277-483 91-308 (310)
89 1h6u_A Internalin H; cell adhe 99.8 5.1E-20 1.7E-24 167.8 17.8 195 225-436 38-232 (308)
90 4glp_A Monocyte differentiatio 99.8 2E-20 6.8E-25 171.1 14.2 227 228-459 64-308 (310)
91 3m19_A Variable lymphocyte rec 99.8 1.6E-19 5.6E-24 159.6 17.6 180 253-436 14-194 (251)
92 2xwt_C Thyrotropin receptor; s 99.8 2.4E-20 8.3E-25 163.8 11.4 197 253-456 31-237 (239)
93 3goz_A Leucine-rich repeat-con 99.8 1.1E-20 3.8E-25 176.7 8.9 251 233-485 3-300 (362)
94 2ca6_A RAN GTPase-activating p 99.8 4.3E-21 1.5E-25 181.4 5.9 102 167-290 21-135 (386)
95 4ay9_X Follicle-stimulating ho 99.8 7.3E-19 2.5E-23 163.4 13.4 240 206-455 12-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 149.3 12.5 177 256-442 10-186 (208)
97 2o6s_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 146.4 13.6 180 280-470 10-190 (208)
98 1h6t_A Internalin B; cell adhe 99.8 4.8E-18 1.6E-22 153.3 14.5 190 255-460 26-215 (291)
99 1h6t_A Internalin B; cell adhe 99.8 9.7E-18 3.3E-22 151.3 15.1 174 251-438 44-217 (291)
100 4ay9_X Follicle-stimulating ho 99.8 1E-17 3.5E-22 155.7 15.5 240 231-479 12-256 (350)
101 3cvr_A Invasion plasmid antige 99.7 9.9E-18 3.4E-22 163.7 14.9 188 254-469 60-254 (571)
102 1m9s_A Internalin B; cell inva 99.7 7E-18 2.4E-22 166.7 12.0 203 254-472 22-224 (605)
103 1m9s_A Internalin B; cell inva 99.7 3.9E-17 1.3E-21 161.4 15.8 174 251-438 41-214 (605)
104 2v9t_B SLIT homolog 2 protein 99.7 2.5E-17 8.6E-22 142.0 12.7 151 305-458 14-165 (220)
105 2xot_A Amphoterin-induced prot 99.7 3.6E-17 1.2E-21 152.6 13.9 175 256-434 21-202 (361)
106 4fs7_A Uncharacterized protein 99.7 2.9E-16 1E-20 148.4 20.2 334 21-379 60-393 (394)
107 4fs7_A Uncharacterized protein 99.7 3.1E-16 1.1E-20 148.2 20.2 65 48-114 62-126 (394)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 3.1E-17 1.1E-21 141.5 11.9 152 304-458 13-166 (220)
109 3cvr_A Invasion plasmid antige 99.7 6.2E-17 2.1E-21 158.1 15.0 188 229-445 60-254 (571)
110 2xot_A Amphoterin-induced prot 99.7 5.1E-17 1.8E-21 151.6 13.4 175 280-458 21-202 (361)
111 4ezg_A Putative uncharacterize 99.7 1E-16 3.5E-21 135.9 13.3 152 274-433 41-193 (197)
112 3e6j_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 137.9 14.5 155 303-460 20-174 (229)
113 3sb4_A Hypothetical leucine ri 99.7 2.1E-17 7.3E-22 152.2 9.1 222 252-476 100-328 (329)
114 4ezg_A Putative uncharacterize 99.7 7.7E-17 2.6E-21 136.6 11.3 132 346-483 62-195 (197)
115 2v9t_B SLIT homolog 2 protein 99.7 3.1E-16 1.1E-20 135.2 13.6 132 278-410 33-164 (220)
116 1xeu_A Internalin C; cellular 99.7 4.1E-17 1.4E-21 144.8 7.8 171 275-460 17-187 (263)
117 2v70_A SLIT-2, SLIT homolog 2 99.7 3.6E-16 1.2E-20 134.8 13.1 111 299-409 54-164 (220)
118 3e6j_A Variable lymphocyte rec 99.7 7.7E-16 2.6E-20 133.7 15.1 155 278-437 20-175 (229)
119 3sb4_A Hypothetical leucine ri 99.7 8.4E-17 2.9E-21 148.2 8.6 288 7-332 24-327 (329)
120 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.3E-21 141.6 9.1 150 273-435 37-186 (263)
121 4fdw_A Leucine rich hypothetic 99.7 2.1E-15 7.2E-20 141.6 17.5 240 229-480 136-381 (401)
122 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 126.0 9.5 132 350-483 24-161 (168)
123 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4.1E-19 136.5 16.8 241 228-483 113-359 (401)
124 1dce_A Protein (RAB geranylger 99.6 5.5E-18 1.9E-22 166.5 -6.6 122 351-476 442-567 (567)
125 4gt6_A Cell surface protein; l 99.6 7.4E-14 2.5E-18 131.9 21.9 334 22-410 53-390 (394)
126 1w8a_A SLIT protein; signaling 99.6 5.3E-15 1.8E-19 124.5 9.8 127 329-458 11-139 (192)
127 4gt6_A Cell surface protein; l 99.6 2.2E-13 7.4E-18 128.7 22.0 333 48-433 54-390 (394)
128 2ell_A Acidic leucine-rich nuc 99.6 1E-14 3.6E-19 120.1 11.3 130 327-458 25-160 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 120.2 7.9 126 350-477 17-148 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 1.1E-14 3.7E-19 117.4 10.6 128 302-453 17-148 (149)
131 1dce_A Protein (RAB geranylger 99.6 5.4E-17 1.8E-21 159.5 -5.3 196 274-486 346-550 (567)
132 2o6r_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 118.7 10.9 108 350-457 28-136 (177)
133 2wfh_A SLIT homolog 2 protein 99.5 5.5E-14 1.9E-18 118.2 11.3 126 329-458 13-139 (193)
134 4b8c_D Glucose-repressible alc 99.5 5.4E-15 1.8E-19 149.9 5.0 216 253-481 173-403 (727)
135 1w8a_A SLIT protein; signaling 99.5 2.4E-14 8.1E-19 120.5 7.6 108 303-410 30-138 (192)
136 1a9n_A U2A', U2A'; complex (nu 99.5 4.1E-14 1.4E-18 117.4 8.6 128 349-480 18-151 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 5.2E-16 1.8E-20 131.6 -3.6 133 345-483 43-186 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4.1E-18 114.6 8.6 109 298-411 15-126 (176)
139 4b8c_D Glucose-repressible alc 99.5 1.8E-14 6E-19 146.2 4.2 192 276-479 172-369 (727)
140 2wfh_A SLIT homolog 2 protein 99.4 8.2E-13 2.8E-17 111.0 12.3 107 303-410 32-138 (193)
141 2o6r_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 108.3 13.5 85 303-387 29-113 (177)
142 4h09_A Hypothetical leucine ri 99.4 1.6E-11 5.4E-16 115.4 20.6 108 271-382 234-341 (379)
143 3un9_A NLR family member X1; l 99.4 1.6E-13 5.5E-18 127.6 3.7 181 301-481 71-282 (372)
144 4h09_A Hypothetical leucine ri 99.4 5.8E-11 2E-15 111.5 21.1 304 27-351 41-357 (379)
145 1ds9_A Outer arm dynein; leuci 99.3 8.1E-15 2.8E-19 124.2 -6.0 118 365-486 39-157 (198)
146 3g39_A Variable lymphocyte rec 99.3 2.5E-12 8.6E-17 105.6 9.0 106 351-459 10-116 (170)
147 3un9_A NLR family member X1; l 99.3 2.5E-13 8.7E-18 126.3 1.3 182 276-458 71-283 (372)
148 2r9u_A Variable lymphocyte rec 99.3 6.4E-12 2.2E-16 103.5 9.1 104 352-458 14-118 (174)
149 3g39_A Variable lymphocyte rec 99.2 1.5E-10 5E-15 95.0 10.8 85 277-362 30-114 (170)
150 2r9u_A Variable lymphocyte rec 99.2 2.4E-10 8.2E-15 94.0 11.3 104 231-339 15-118 (174)
151 2ra8_A Uncharacterized protein 99.0 2.6E-10 8.9E-15 105.0 7.2 200 276-480 106-341 (362)
152 2ifg_A High affinity nerve gro 99.0 1.4E-09 4.8E-14 100.8 9.4 103 353-458 11-116 (347)
153 2ra8_A Uncharacterized protein 98.9 5.3E-09 1.8E-13 96.3 10.0 156 297-456 167-341 (362)
154 2ifg_A High affinity nerve gro 98.8 6.1E-09 2.1E-13 96.4 8.9 103 306-411 12-116 (347)
155 1io0_A Tropomodulin; LRR prote 98.7 9.9E-09 3.4E-13 85.2 4.2 115 343-457 29-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 5.7E-08 2E-12 80.6 5.0 115 367-481 29-163 (185)
157 3e4g_A ATP synthase subunit S, 98.5 8.8E-08 3E-12 77.1 4.1 34 58-91 62-95 (176)
158 3e4g_A ATP synthase subunit S, 98.4 5.6E-07 1.9E-11 72.5 6.0 88 79-166 59-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 5.1E-07 1.7E-11 78.6 2.9 104 370-475 137-257 (267)
160 3rw6_A Nuclear RNA export fact 98.1 2.5E-06 8.6E-11 74.2 5.7 109 3-113 136-259 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 4.4E-05 1.5E-09 62.7 4.0 114 344-457 35-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00025 8.7E-09 58.2 5.7 39 349-387 69-111 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.6E-08 50.8 5.1 55 402-458 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0056 1.9E-07 46.7 5.6 56 378-435 12-69 (130)
165 2lz0_A Uncharacterized protein 86.2 0.65 2.2E-05 33.1 3.5 40 50-90 13-52 (100)
166 2lz0_A Uncharacterized protein 83.3 1.8 6.3E-05 30.7 4.8 48 18-67 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-53 Score=436.73 Aligned_cols=477 Identities=31% Similarity=0.406 Sum_probs=283.9
Q ss_pred cccccccccEEecCCccccccccccc-cCCCCCcEEEccCccccCCccccc---ccCCCCCcEEECCCCccCCCcchhcc
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQG---ICNLKNLLELDLSSNNFEGHLPQCLN 78 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~ 78 (487)
+|+++++|++|++++|.+.+..+..+ .++++|++|++++|.+.+... .. +.++++|++|++++|.+....+ +.
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~ 197 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVD--VS 197 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH-HHHHHTTCCTTCCEEECCSSEEESCCB--CT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC-hhhhhhccCCCCCEEECCCCcccccCC--cc
Confidence 57778888888888877665555443 667777777777776653322 22 4555555555555555543322 24
Q ss_pred CCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccC------------------
Q 036411 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG------------------ 140 (487)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~------------------ 140 (487)
.+++|++|++++|.++...|. +..+++|++|++++|.+.+. ....+..+++|++|+++.+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 455555555555555443333 55555555555555554422 2234444555555544443
Q ss_pred ----CCccccccccccCCCCCceeecccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCC
Q 036411 141 ----NDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215 (487)
Q Consensus 141 ----~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (487)
.....++......+++|++|++++|.+ ...+..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 222222222222346777777777776 356666777778888888888776667766566777777777777765
Q ss_pred CCCCCCCCCcC---------------------------CCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCC
Q 036411 216 SGILPRLPNAK---------------------------YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN 268 (487)
Q Consensus 216 ~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 268 (487)
....+.. +.. +++|+.|++++|.+.+..+..+.. +++|++|++++|.+.+.
T Consensus 356 ~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 356 SGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESC
T ss_pred CccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCc
Confidence 5332221 122 334444444444444333333322 34555566655555555
Q ss_pred cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccC
Q 036411 269 IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLS 348 (487)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 348 (487)
.+..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 5555555566666666666655444443 345566666666666665555555666666666666666666555556666
Q ss_pred CCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh----------------------------------
Q 036411 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL---------------------------------- 394 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------------- 394 (487)
+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+..|..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 6666666666666665666666666666666666665554333221
Q ss_pred ------------------------------------ccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcc
Q 036411 395 ------------------------------------GNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLI 437 (487)
Q Consensus 395 ------------------------------------~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 437 (487)
..+++|+.|++++|+++ ..+..+..+++|+.|++++|.+++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 22345666666666664 34455667777777777777777777
Q ss_pred hHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 438 PIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 438 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
|..+..+++|+.|+|++|++++.+|..++++++|++|++++|+++|.||+
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 77777777777777777777777777777777777777777777777774
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-51 Score=424.31 Aligned_cols=479 Identities=32% Similarity=0.454 Sum_probs=370.0
Q ss_pred ccccccccccEEecCCccccccccc--cccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchh---
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILP--YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQC--- 76 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--- 76 (487)
++|+++++|++|++++|.+.+.++. .++.+++|++|++++|.+.+..+...+.++++|++|++++|.+....+..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 4688999999999999998887777 89999999999999999876555544589999999999999998666666
Q ss_pred ccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCC
Q 036411 77 LNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP 156 (487)
Q Consensus 77 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 156 (487)
+.++++|++|++++|.++...+ +..+++|++|++++|.+.+.... ++.+++|++|+++++... ......+..+++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~ 248 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLS-GDFSRAISTCTE 248 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCC-SCHHHHTTTCSS
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCC-CcccHHHhcCCC
Confidence 7899999999999999886544 37899999999999998765443 899999999999876533 233334555666
Q ss_pred Cceeeccccccc-----------------------cccccccc-CCcccEEeCCCCcccCCcchHhhhcCCCCcEEEccc
Q 036411 157 LKVLQLSHCHLN-----------------------VNSSFLLH-QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN 212 (487)
Q Consensus 157 L~~L~l~~~~~~-----------------------~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (487)
|++|++++|.+. ..+..+.. +++|+.|++++|.+.+..+.. +..+++|++|++++
T Consensus 249 L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSS 327 (768)
T ss_dssp CCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCC
Confidence 666666666552 33333333 256666666666655444433 33566677777766
Q ss_pred CCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccc--------------------------cCceEEEEccCCCCC
Q 036411 213 NSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIV--------------------------FQKLIYLDVSKNSFE 266 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~ 266 (487)
|.+....+...+..+++|+.|++++|.+.+.++..+... +++|++|++++|.++
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 665433332224566778888888777765555554432 234555555555554
Q ss_pred CCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccc
Q 036411 267 GNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGL 346 (487)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 346 (487)
+..+..+..+++|+.|++++|.+.+.+|.. |..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 455566777788888888888877555544 5778888888888888887778888888889999999998887888888
Q ss_pred cCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccc----------
Q 036411 347 LSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMV---------- 415 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~---------- 415 (487)
..+++|+.|++++|++++.+|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|++.. .+.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 888999999999999988889999999999999999999888888889999999999999987641 111
Q ss_pred ------------------------------------------------------------cccCCCcceEEEeeCcccCC
Q 036411 416 ------------------------------------------------------------SLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 416 ------------------------------------------------------------~~~~~~~L~~L~l~~~~~~~ 435 (487)
.+..+++|+.|++++|++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 22345789999999999999
Q ss_pred cchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 436 LIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 436 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
.+|..+..+++|+.|+|++|.+++.+|..++++++|+.|++++|+++|.+|+
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 9999999999999999999999999999999999999999999999999984
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-48 Score=393.95 Aligned_cols=468 Identities=21% Similarity=0.172 Sum_probs=308.4
Q ss_pred cccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEec
Q 036411 9 QLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDI 88 (487)
Q Consensus 9 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 88 (487)
++++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.+....|..++++++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 45666666666655555566666666666666666542 33445666666666666666665555556666666666666
Q ss_pred cCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCc--eeeccccc
Q 036411 89 SYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLK--VLQLSHCH 166 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~ 166 (487)
++|.++...+..+..+++|++|++++|.+.+...... ..+++|++++++++ .+.......+..+++|+ .+++++|.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccc-cCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCc
Confidence 6666654445556666666666666665543222222 22566666666443 22333333344445555 55555555
Q ss_pred ccccccccccCC----------------------------------------------------cccEEeCCCCcccCCc
Q 036411 167 LNVNSSFLLHQH----------------------------------------------------HLKFLDLSHNQLVGNF 194 (487)
Q Consensus 167 ~~~~~~~~~~~~----------------------------------------------------~L~~L~l~~~~~~~~~ 194 (487)
+...+....... +++.++++++.+. .+
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~ 269 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NI 269 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-cc
Confidence 432222211122 5667777777665 44
Q ss_pred chHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCc-chhh
Q 036411 195 PTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI-PYSI 273 (487)
Q Consensus 195 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~ 273 (487)
+...+..+++|++|++++|.+..... .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+.. ...+
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchhhh
Confidence 55555677788888888777764333 23667778888888877764333333 34577888888887766433 3346
Q ss_pred hccccCcEEecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccc-cccCCC
Q 036411 274 SEMKELITLDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD-GLLSST 350 (487)
Q Consensus 274 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 350 (487)
..+++|+.|++++|.+. ..+ ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..++
T Consensus 347 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 77788888888888776 443 33457778888888888877666667777788888888888877654433 367778
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCc---chhhhccCcCCcEEeccCCccccc-cccccCCCcceEE
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS---IPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHI 426 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L 426 (487)
+|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|+++.. +..+..+++|++|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 888888888888777777788888888888888877642 224577788888888888887644 4566678888888
Q ss_pred EeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCC
Q 036411 427 YLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 427 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
++++|++++..+.++..+++| .|++++|++++..|..+..+++|+.|++++||+.+..
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 888888888778888888888 8888888888777778888888888888888877654
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-47 Score=385.66 Aligned_cols=451 Identities=21% Similarity=0.193 Sum_probs=376.7
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
++|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+.+++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 478999999999999999888888999999999999999999873 3456799999999999999999876678899999
Q ss_pred CccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccce--EEEeccCCCcccccccccc-------
Q 036411 82 HLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLE--VLVLSSGNDMLQVKTENWL------- 152 (487)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~l~l~~~~~~~~~~~~~~~------- 152 (487)
+|++|++++|.++......+..+++|++|++++|.+.+ .....++.+++|+ .++++++... ......+.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~-~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSL 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCC-EECTTTTTTCEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCccC-ccChhHhhhcccccc
Confidence 99999999999886443445569999999999998873 3456788888888 7777654322 22211111
Q ss_pred ------------------------------------------CC--CCCceeecccccccccc-cccccCCcccEEeCCC
Q 036411 153 ------------------------------------------PT--YPLKVLQLSHCHLNVNS-SFLLHQHHLKFLDLSH 187 (487)
Q Consensus 153 ------------------------------------------~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 187 (487)
.. .+++.+++.++.+...+ ..+..+++|+.|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 11 15778888888885444 4588899999999999
Q ss_pred CcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCC
Q 036411 188 NQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (487)
|.+. .++..+ ..+++|++|++++|.+....+. .+..+++|+.|++++|.+...++......+++|++|++++|.+.+
T Consensus 288 n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 288 THLS-ELPSGL-VGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp SCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred CccC-CCChhh-cccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 9987 666654 5789999999999998765443 457889999999999988766766655667999999999999875
Q ss_pred Cc--chhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCc-CCcCCCCccEEEcCCCcccccccc
Q 036411 268 NI--PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFP-NFMNLTHLSSLRLNNNHFSGKMAD 344 (487)
Q Consensus 268 ~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 344 (487)
.. +..+..+++|+.|++++|.+. .++...|..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+.
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 54 567889999999999999987 56666678999999999999998766544 478899999999999999888888
Q ss_pred cccCCCcccEEEccCCccCCC---chhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCC
Q 036411 345 GLLSSTLLDVLDVSNNKLSGD---IPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNL 420 (487)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~ 420 (487)
.+..+++|++|++++|++.+. .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++. .+..+..+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 899999999999999998752 23578999999999999999998778899999999999999999864 45677789
Q ss_pred CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+.| +|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999 999999999999999999999999999999999653
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-47 Score=387.65 Aligned_cols=475 Identities=24% Similarity=0.232 Sum_probs=250.1
Q ss_pred cccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 82 (487)
+|.++++|++|++++|.+.+..+.+++.+++|++|++++|.+.+ .++..|.++++|++|++++|.+....+..++++++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 57888899999999888888778888889999999999888863 34456888999999999999888666678888999
Q ss_pred ccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHh--hccccceEEEeccCCCccccccccccC-------
Q 036411 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSL--ANHSKLEVLVLSSGNDMLQVKTENWLP------- 153 (487)
Q Consensus 83 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~------- 153 (487)
|++|++++|.++...+..+..+++|++|++++|.+.+... ..+ ..+++|+.++++++. +.......+..
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-HHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-HHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhh
Confidence 9999999998887777788888999999999888765433 233 345788888887653 22222221111
Q ss_pred --------------------CCCCceeeccccccc-ccccccccCC--cccEEeCCCCcccCCcchHhhhcCCCCcEEEc
Q 036411 154 --------------------TYPLKVLQLSHCHLN-VNSSFLLHQH--HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210 (487)
Q Consensus 154 --------------------~~~L~~L~l~~~~~~-~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 210 (487)
.++|+.|+++++.+. ..+..+..++ +|+.|++++|.+. ..+...+..+++|++|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeC
Confidence 133444444444442 2222333332 2555555555544 222222334555555555
Q ss_pred ccCCCCCCCCC--------------------------------CCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 211 WNNSFSGILPR--------------------------------LPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 211 ~~~~~~~~~~~--------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
++|.+....+. ..+..+++|+.|++++|.+.+..+. .+..+++|++|
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 358 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYL 358 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEE
Confidence 55544332221 1234455566666666655532222 22223445555
Q ss_pred EccCCCCCCC--cchhhhc--cccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCC-CcCCcCCCCccEEEc
Q 036411 259 DVSKNSFEGN--IPYSISE--MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL-FPNFMNLTHLSSLRL 333 (487)
Q Consensus 259 ~l~~~~~~~~--~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 333 (487)
++++|.+... ....+.. .++|+.|++++|.+. .++...|..+++|+.|++++|.+.+.. ...+..+++|+.|++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 5544432110 0000110 123333333333333 222233444445555555555443222 133444444555555
Q ss_pred CCCcccccccccccCCCcccEEEccCCccC--CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLS--GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 444444333334444444444444444332 233444444555555555555544433444444455555555555443
Q ss_pred ccc---------ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 412 VSM---------VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 412 ~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
... ..+..+++|++|++++|.++...+.+|..+++|+.|++++|.++...+..+..+++|+.|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 211 11334444444444444444433334444444444444444444333334444444444444444444
Q ss_pred C
Q 036411 483 G 483 (487)
Q Consensus 483 ~ 483 (487)
+
T Consensus 598 ~ 598 (680)
T 1ziw_A 598 S 598 (680)
T ss_dssp B
T ss_pred c
Confidence 3
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-47 Score=386.20 Aligned_cols=463 Identities=21% Similarity=0.160 Sum_probs=361.7
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
+++++|++++|.+.+..+..|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.+....|..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 568888888888777777678888888888888887763 3455678888888888888888766677788888888888
Q ss_pred ccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCC----Cceeecc
Q 036411 88 ISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP----LKVLQLS 163 (487)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~----L~~L~l~ 163 (487)
+++|.++...+..+.++++|++|++++|.+.+...+..++.+++|++|+++++. +.......+..+.+ +..++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeecc
Confidence 888887766656788888888888888877654455677888888888887653 33343333433333 3367777
Q ss_pred cccccccccccccCCcccEEeCCCCccc----------------------------------------------------
Q 036411 164 HCHLNVNSSFLLHQHHLKFLDLSHNQLV---------------------------------------------------- 191 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------------------------------------- 191 (487)
++.++..+.......+|+.+++++|.+.
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 7776555544444446777777666442
Q ss_pred ------CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCC
Q 036411 192 ------GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSF 265 (487)
Q Consensus 192 ------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 265 (487)
+..+. +..+++|+.+++.++.+.... .+..+++|+.|++++|.+. .++.. .+++|++|++++|..
T Consensus 270 ~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~-~lp~~---~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 270 YTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLK-QFPTL---DLPFLKSLTLTMNKG 340 (606)
T ss_dssp CCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCS-SCCCC---CCSSCCEEEEESCSS
T ss_pred ccccccccccc--cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCc-ccccC---CCCccceeeccCCcC
Confidence 11111 345678888888888776543 3467788999999999884 66643 568999999999965
Q ss_pred CCCcchhhhccccCcEEecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc
Q 036411 266 EGNIPYSISEMKELITLDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA 343 (487)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 343 (487)
.+. ..+..+++|+.|++++|.+. ..+ ...+..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+
T Consensus 341 ~~~--~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 341 SIS--FKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp CEE--CCCCCCTTCCEEECCSSCEE-EEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred ccc--hhhccCCCCCEEECcCCccC-CCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence 432 25678899999999999987 442 3446889999999999999865 34778899999999999999987666
Q ss_pred -ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccC-cchhhhccCcCCcEEeccCCccccc-cccccCC
Q 036411 344 -DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG-SIPVQLGNLESLEFIDISENGLSVS-MVSLSNL 420 (487)
Q Consensus 344 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~ 420 (487)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|+++.. +..+..+
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 678889999999999999988889999999999999999999886 3678889999999999999998654 4557789
Q ss_pred CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccC-ceeEEeccCCccCCCCC
Q 036411 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELS-NLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~p 486 (487)
++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++||+.+..|
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999988999999999999999999997 6777789997 69999999999987654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-46 Score=380.59 Aligned_cols=479 Identities=23% Similarity=0.201 Sum_probs=362.3
Q ss_pred cccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 82 (487)
+|+++++|++|++++|.+....+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+.++++
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 56788899999999888777666678889999999999988863 34466888899999999998888777777888888
Q ss_pred ccEEeccCccccCCcccccc--CCCCCcEEeccccccCcchhHHHhhcc---------------------------cc--
Q 036411 83 LKVLDISYNQLSGNFPSVLT--NLTSLEYLDLSFIDFQGTFLINSLANH---------------------------SK-- 131 (487)
Q Consensus 83 L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------~~-- 131 (487)
|++|++++|.++...+..+. .+++|++|++++|.+.+.. ...+..+ ++
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~ 225 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence 88888888887765555443 4577888888877665322 1222222 23
Q ss_pred ------------------------ceEEEeccCCCccccccccccCCCCCceeeccccccc-ccccccccCCcccEEeCC
Q 036411 132 ------------------------LEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN-VNSSFLLHQHHLKFLDLS 186 (487)
Q Consensus 132 ------------------------L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~ 186 (487)
|+.|+++.+. +..+....+..+++|+.|++++|.+. ..+..+..+++|+.++++
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 4444443321 22222333444444555555554442 223344445555555554
Q ss_pred CCcccC--------CcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccc-cCCccccc--ccCce
Q 036411 187 HNQLVG--------NFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG-KLPENLGI--VFQKL 255 (487)
Q Consensus 187 ~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~--~~~~L 255 (487)
++...+ .+....+..+++|++|++++|.+....+. .+..+++|+.|++++|.+.. .++...+. ..++|
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 432211 11112345678889999988888765544 45788999999999986432 22222211 12589
Q ss_pred EEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCC
Q 036411 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335 (487)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (487)
+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++...|.++++|++|++++|.+.+..+..+..+++|+.|++.+
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 99999999998777888999999999999999998678877789999999999999998877788899999999999999
Q ss_pred Cccc--ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcch--------hhhccCcCCcEEec
Q 036411 336 NHFS--GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP--------VQLGNLESLEFIDI 405 (487)
Q Consensus 336 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~l~l 405 (487)
|.+. +..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.++.... ..+..+++|+.|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 9876 4567788899999999999999998888889999999999999999875322 23678899999999
Q ss_pred cCCccccccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccc-ccCceeEEeccCCccCC
Q 036411 406 SENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN-ELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 406 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~ 483 (487)
++|++...+. .+..+++|+.|++++|+++...+..+..+++|+.|++++|+++...+..+. .+++|+.|++++||+.+
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 9999976554 477999999999999999998888899999999999999999888888887 89999999999999877
Q ss_pred CC
Q 036411 484 RI 485 (487)
Q Consensus 484 ~~ 485 (487)
.-
T Consensus 624 ~c 625 (680)
T 1ziw_A 624 TC 625 (680)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-47 Score=381.48 Aligned_cols=441 Identities=20% Similarity=0.186 Sum_probs=362.1
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
++|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+++++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 368899999999999999888888899999999999999999874 3467799999999999999999877668899999
Q ss_pred CccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccc----eEEEeccCCCccccccccccCCCC
Q 036411 82 HLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL----EVLVLSSGNDMLQVKTENWLPTYP 156 (487)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~l~l~~~~~~~~~~~~~~~~~~~ 156 (487)
+|++|++++|.++. .+|..+.++++|++|++++|.+.+. ....++.+++| .+++++.+. +..++...+... +
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~-~ 205 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI-K 205 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTC-E
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-ChhhhhhhhccccccceeeccCCC-cceeCcccccCc-e
Confidence 99999999999875 4688999999999999999988753 23344444444 367776543 344444444333 6
Q ss_pred Cceeeccccccc----------------------------------------------------------ccccccccCC
Q 036411 157 LKVLQLSHCHLN----------------------------------------------------------VNSSFLLHQH 178 (487)
Q Consensus 157 L~~L~l~~~~~~----------------------------------------------------------~~~~~~~~~~ 178 (487)
|+.++++++.+. .....+..++
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~ 285 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence 777776665431 1111255678
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
+|+.++++++.+. .++ .+..+++|++|++.+|.+... +. . .+++|+.|++++|...... ....+++|++|
T Consensus 286 ~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~~l-p~--~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L 355 (606)
T 3vq2_A 286 NVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLKQF-PT--L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYL 355 (606)
T ss_dssp TCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCSSC-CC--C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEE
T ss_pred CCCEEEecCccch-hhh--hccccccCCEEEcccccCccc-cc--C-CCCccceeeccCCcCccch---hhccCCCCCEE
Confidence 9999999999886 555 355789999999999998433 33 2 8899999999999554333 22246899999
Q ss_pred EccCCCCCCC--cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCC-cCCcCCCCccEEEcCC
Q 036411 259 DVSKNSFEGN--IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLF-PNFMNLTHLSSLRLNN 335 (487)
Q Consensus 259 ~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 335 (487)
++++|.+.+. .+..+..+++|+.|++++|.+. .++ ..|..+++|+.|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 9999998754 2678889999999999999987 666 446889999999999999887666 5788999999999999
Q ss_pred CcccccccccccCCCcccEEEccCCccCC-CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc-
Q 036411 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSG-DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS- 413 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~- 413 (487)
|.+.+..+..+..+++|++|++++|++.+ ..|..++.+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 99998888889999999999999999986 4788899999999999999999988888899999999999999999755
Q ss_pred cccccCCCcceEEEeeCcccCCcchHhhhccC-cceEEeCCCCcccc
Q 036411 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSS-TLLTLDLRDNKFFG 459 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 459 (487)
+..+..+++|++|++++|+++.. |..+..++ +|+.|++++|++.+
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCC
T ss_pred HHHccCCCcCCEEECCCCcCccc-CHhHhhhcccCcEEEccCCCccc
Confidence 66777999999999999999965 44577776 69999999999864
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=368.06 Aligned_cols=467 Identities=19% Similarity=0.153 Sum_probs=375.2
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++++.|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.+....+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 478999999999888778889999999999999998874 4456799999999999999999877778899999999999
Q ss_pred ccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCC----ceeecc
Q 036411 88 ISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL----KVLQLS 163 (487)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L----~~L~l~ 163 (487)
+++|.++...+..+..+++|++|++++|.+.....+..++.+++|++|+++++. +.......+..+.+| +.++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccC
Confidence 999998866555788999999999999988765556778999999999997654 344444555555566 789999
Q ss_pred cccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCc--------------------------------EEEcc
Q 036411 164 HCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLE--------------------------------VLILW 211 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--------------------------------~L~l~ 211 (487)
++.+...+.......+|+.++++++..........+..++.++ .+.+.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 9888555444344448999988877433222222223333333 33333
Q ss_pred cC-CCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCC
Q 036411 212 NN-SFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 212 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
++ .+....+. .+..+++|+.++++++.+. .++..+... +|++|++++|.+. ..+. ..+++|+.|++++|.+.
T Consensus 266 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 266 YLDYYLDDIID-LFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp ETTEEESCSTT-TTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSC
T ss_pred cchhhhhhchh-hhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCccc
Confidence 33 22222222 3467889999999999887 566665543 8999999999987 4433 47889999999999987
Q ss_pred CCCchhhhcCCCCCcEEECCCCccCCCC--CcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCch-
Q 036411 291 GELPRSIFSSCLSLETLDLSNNNFYGQL--FPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIP- 367 (487)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 367 (487)
+..+. ..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+.... +..+++|++|++++|.+.+..+
T Consensus 339 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 339 NAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred ccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 55444 56899999999999886543 45677899999999999998855544 8899999999999999886655
Q ss_pred hhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc--cccccccCCCcceEEEeeCcccCCcchHhhhccC
Q 036411 368 HWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS--VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSS 445 (487)
Q Consensus 368 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 445 (487)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+++..+.++..++
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 57889999999999999998888888999999999999999986 4667788999999999999999988888999999
Q ss_pred cceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 446 TLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
+|+.|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999988888999999999999999999998874
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=375.68 Aligned_cols=465 Identities=22% Similarity=0.243 Sum_probs=295.1
Q ss_pred cccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEE
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 86 (487)
.+++++|++++|.+.+..+..|+.+++|++|++++|...+.+.+.+|.++++|++|++++|.+....|..+.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 36899999999998888888999999999999999966555667789999999999999999987778999999999999
Q ss_pred eccCccccCCcccc--ccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCC--CCCceeec
Q 036411 87 DISYNQLSGNFPSV--LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPT--YPLKVLQL 162 (487)
Q Consensus 87 ~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l 162 (487)
++++|.++...+.. +.++++|++|++++|.+.+......++.+++|++|+++++. +.......+... ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEEC
Confidence 99999988655544 88999999999999998876666788999999999998754 333333344433 68999999
Q ss_pred ccccc-cccccccccCCc------ccEEeCCCCcccCCcchHhhhc----------------------------------
Q 036411 163 SHCHL-NVNSSFLLHQHH------LKFLDLSHNQLVGNFPTWLLQN---------------------------------- 201 (487)
Q Consensus 163 ~~~~~-~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~~~~---------------------------------- 201 (487)
+.|.+ ...+..+..+++ |+.|++++|.+.+..+..+...
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 98887 334444444444 8999999987765554443322
Q ss_pred ---CCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhcccc
Q 036411 202 ---NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKE 278 (487)
Q Consensus 202 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 278 (487)
.++|+.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred ccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 13455555555544433222 23445555555555555543322222 22345555555555555444445555555
Q ss_pred CcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEcc
Q 036411 279 LITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVS 358 (487)
Q Consensus 279 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 358 (487)
|+.|++++|.+. .++...|..+++|+.|++++|.+.+. ..+++|+.|.+.+|.+.. .+. ....++.++++
T Consensus 340 L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~---~~~~l~~L~ls 409 (844)
T 3j0a_A 340 VAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPK---INLTANLIHLS 409 (844)
T ss_dssp CCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCC---CCTTCCEEECC
T ss_pred CCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-ccc---cccccceeecc
Confidence 555555555554 44444445555555555555554321 114445555555554431 111 12344555555
Q ss_pred CCccCCC-chhhhcccccccEEecCCccccCcchh-hhccCcCCcEEeccCCccccc------cccccCCCcceEEEeeC
Q 036411 359 NNKLSGD-IPHWIGNFSVLWLLLMSENYLQGSIPV-QLGNLESLEFIDISENGLSVS------MVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 359 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~~L~~L~l~~ 430 (487)
+|++.+. .+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+... ...+..+++|+.|++++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 5554432 122344666777777777766533222 234456666666666665311 12344566677777777
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
|.+++..+..+..+++|+.|+|++|.+++..+..+. ++|+.|++++|++.+.+|
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 777666666666667777777777776655444444 666666666666666655
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-44 Score=356.71 Aligned_cols=467 Identities=18% Similarity=0.198 Sum_probs=300.1
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+++|.++++|++|++++|.+....+..++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 356666666665555555555666666666666665542 2234455666666666666666544444456666666666
Q ss_pred ccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeeccccc
Q 036411 88 ISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH 166 (487)
Q Consensus 88 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (487)
+++|.++. ..+..+.++++|++|++++|...+......++.+++|++|+++++. +.......+..+++|++|++..+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccCc
Confidence 66665543 1334555566666666665553333333445555555655555433 222233344444555555555555
Q ss_pred cccccccc-ccCCcccEEeCCCCcccCCc--chHhhhcCCCCcEEEcccCCCCCCCCC---CCCcCCCCCcEEEccCCcc
Q 036411 167 LNVNSSFL-LHQHHLKFLDLSHNQLVGNF--PTWLLQNNTGLEVLILWNNSFSGILPR---LPNAKYDKLRHLDISTNNF 240 (487)
Q Consensus 167 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 240 (487)
....+..+ ..+++|+.|++++|.+.+.. +......++.|+.|.+.++.+...... .....+++++.+++.+|.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 43333322 23455555555555544211 111222345555555555443221000 0112345556666666554
Q ss_pred cccCC-----cccccccCceEEEEccCCCCCCC-----cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 241 SGKLP-----ENLGIVFQKLIYLDVSKNSFEGN-----IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 241 ~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+... .......++++.+++.++.+... ........++|+.|++++|.+. .+|..+++.+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 32100 01112345677777766655421 1122344578999999999987 8998887889999999999
Q ss_pred CCccCCCCC---cCCcCCCCccEEEcCCCccccccc--ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcc
Q 036411 311 NNNFYGQLF---PNFMNLTHLSSLRLNNNHFSGKMA--DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 311 ~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (487)
+|.+.+..+ ..+..+++|+.|++++|.+++... ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 999876442 336788999999999999975432 45788999999999999998 678888899999999999999
Q ss_pred ccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccc
Q 036411 386 LQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI 465 (487)
Q Consensus 386 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 465 (487)
+. ..+..+. ++|+.|++++|+++... ..+++|++|++++|+++.+.. ...+++|+.|++++|++++..+..+
T Consensus 422 l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 422 IR-VVKTCIP--QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp CS-CCCTTSC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred cc-cccchhc--CCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHH
Confidence 87 3444432 68999999999987543 478999999999999996543 3568999999999999998888899
Q ss_pred cccCceeEEeccCCccCCCCC
Q 036411 466 NELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 466 ~~l~~L~~L~l~~~~~~~~~p 486 (487)
..+++|+.|++++||+.+..|
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHH
T ss_pred hcCcccCEEEecCCCccCCCc
Confidence 999999999999999988765
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-42 Score=354.89 Aligned_cols=463 Identities=23% Similarity=0.233 Sum_probs=363.4
Q ss_pred ccccccccccEEecCCccccccc-cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchh--cc
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSI-LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQC--LN 78 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~ 78 (487)
++|.++++|++|++++|.....+ +++|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+.. +.
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 46889999999999999655444 7789999999999999999874 34678999999999999999998655554 89
Q ss_pred CCCCccEEeccCccccCCcc-ccccCCCCCcEEeccccccCcchhHHHhhcc--ccceEEEeccCCCccccccccccCCC
Q 036411 79 NLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGTFLINSLANH--SKLEVLVLSSGNDMLQVKTENWLPTY 155 (487)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~~~~ 155 (487)
++++|++|++++|.++...+ ..|.++++|++|++++|.+.+.. ...+..+ ++|+.++++.+...... ...+..++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~ 198 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCM 198 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCcccccc-ccchhhcC
Confidence 99999999999999876544 57899999999999999886432 2344444 88999999776433322 22222222
Q ss_pred ------CCceeeccccccc-ccccc------------------------------------ccc--CCcccEEeCCCCcc
Q 036411 156 ------PLKVLQLSHCHLN-VNSSF------------------------------------LLH--QHHLKFLDLSHNQL 190 (487)
Q Consensus 156 ------~L~~L~l~~~~~~-~~~~~------------------------------------~~~--~~~L~~L~l~~~~~ 190 (487)
.|+.|++++|.+. ..+.. +.. .++|+.|++++|.+
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 4888888887542 11111 111 26899999999988
Q ss_pred cCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc
Q 036411 191 VGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 270 (487)
. ......+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+....+
T Consensus 279 ~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 279 F-SLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp C-EECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCS
T ss_pred c-ccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccCh
Confidence 7 44455567899999999999998766554 45788999999999999874444444 456899999999999987777
Q ss_pred hhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc-ccccCC
Q 036411 271 YSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA-DGLLSS 349 (487)
Q Consensus 271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 349 (487)
..+..+++|+.|++++|.+. .++. +++|+.+++++|.+... +. ...+++.|++++|.+.+... ..+..+
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred hhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhccCCCCcccc-cc---cccccceeecccCccccCchhhhhhcC
Confidence 77889999999999999987 4443 78999999999998743 22 24679999999999874322 234578
Q ss_pred CcccEEEccCCccCCCchh-hhcccccccEEecCCccccC-----cchhhhccCcCCcEEeccCCcccccccc-ccCCCc
Q 036411 350 TLLDVLDVSNNKLSGDIPH-WIGNFSVLWLLLMSENYLQG-----SIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSS 422 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~ 422 (487)
++|+.|++++|++++..+. .+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++..... +..+++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 9999999999998754332 45668999999999998863 3345678889999999999999755544 668999
Q ss_pred ceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCC
Q 036411 423 VKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 423 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
|+.|++++|++++..+..+. ++|+.|++++|++++..|..+ ++|+.|++++||+.+..
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence 99999999999988777666 899999999999988888665 58899999999987643
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=338.08 Aligned_cols=445 Identities=23% Similarity=0.228 Sum_probs=355.4
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
.+|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|+++++.+....+..+++++
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccCCCccccccc
Confidence 368899999999999999888878889999999999999999863 4456799999999999999999865555799999
Q ss_pred CccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccc----eEEEeccCCCccccccccccCCCC
Q 036411 82 HLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL----EVLVLSSGNDMLQVKTENWLPTYP 156 (487)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~l~l~~~~~~~~~~~~~~~~~~~ 156 (487)
+|++|++++|.++. .+|..+.++++|++|++++|.+.+ .....++.+++| +.++++.+. +..+....+... +
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~-~ 201 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEI-R 201 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTC-E
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCCCC-ceecCHHHhccC-c
Confidence 99999999999886 368899999999999999998874 334566777777 788887653 444444444444 7
Q ss_pred Cceeecccccc--cccccccccCC--------------------------------cccEEeCCCC-cccCCcchHhhhc
Q 036411 157 LKVLQLSHCHL--NVNSSFLLHQH--------------------------------HLKFLDLSHN-QLVGNFPTWLLQN 201 (487)
Q Consensus 157 L~~L~l~~~~~--~~~~~~~~~~~--------------------------------~L~~L~l~~~-~~~~~~~~~~~~~ 201 (487)
|+.+++.++.. ...+..+..++ .++.+++.++ .+.+..+ ..+..
T Consensus 202 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~ 280 (570)
T 2z63_A 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNC 280 (570)
T ss_dssp EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGG
T ss_pred ceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcC
Confidence 88888877632 11111111222 2344555544 3333333 33457
Q ss_pred CCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcE
Q 036411 202 NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELIT 281 (487)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 281 (487)
+++|+.+++.++.+...... ...+ +|+.|++.+|.+. .++.. .+++|++|++++|.+....+. ..+++|+.
T Consensus 281 l~~L~~L~l~~~~l~~l~~~--~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~ 351 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDF--SYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEF 351 (570)
T ss_dssp GTTCSEEEEESCEECSCCBC--CSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred cCcccEEEecCccchhhhhh--hccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCE
Confidence 89999999999987754333 2445 8999999999887 55553 468999999999988755443 67899999
Q ss_pred EecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc-ccccCCCcccEEEcc
Q 036411 282 LDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA-DGLLSSTLLDVLDVS 358 (487)
Q Consensus 282 L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 358 (487)
|++++|.+. ..+ ...+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 352 L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 352 LDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EECCSSCCB-EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EeCcCCccC-ccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 999999987 442 34467899999999999998754443 8889999999999999876544 567889999999999
Q ss_pred CCccCCCchhhhcccccccEEecCCcccc-CcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCc
Q 036411 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQ-GSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
+|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|+++.. +..+..+++|++|++++|++++.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 99998888899999999999999999987 46788899999999999999999765 56777999999999999999998
Q ss_pred chHhhhccCcceEEeCCCCcccccCc
Q 036411 437 IPIALLRSSTLLTLDLRDNKFFGRIP 462 (487)
Q Consensus 437 ~~~~~~~~~~L~~L~l~~~~~~~~~~ 462 (487)
.+..+..+++|+.|++++|++++..+
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHHHhhcccCCcEEEecCCcccCCCc
Confidence 88889999999999999999976554
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-42 Score=338.76 Aligned_cols=455 Identities=20% Similarity=0.192 Sum_probs=341.6
Q ss_pred cEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC
Q 036411 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90 (487)
Q Consensus 11 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (487)
++|+++++.+.. +|..+. ++|++|++++|.+.+. .+..|.++++|++|++++|.+....|..+.++++|++|++++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578888887764 444443 7888888888888643 345688888888888888888866678888888888888888
Q ss_pred ccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCC--ceeecccccc-
Q 036411 91 NQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL--KVLQLSHCHL- 167 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~- 167 (487)
|.++ .+|.. .+++|++|++++|.+.+...+..++.+++|++|+++++.-.. ..+..+++| +.+++.+|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence 8887 45544 788888888888888764455678888888888887754322 334555666 8888888876
Q ss_pred --cccccccccCC-cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCC-------CCCCCCCCCCcCCCCCcEEEccC
Q 036411 168 --NVNSSFLLHQH-HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNS-------FSGILPRLPNAKYDKLRHLDIST 237 (487)
Q Consensus 168 --~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~ 237 (487)
...+..+..+. +...++++++.+.+..+...+..++.|+.+++++|. +....+ .+..+++|+.+++.+
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccc
Confidence 23334444433 344667788877767776666778888998888875 221111 346678899999988
Q ss_pred CcccccCCccccc--ccCceEEEEccCCCCCCCcchhh-----hccccCcEEecccccCCCCCchhhhcCC---CCCcEE
Q 036411 238 NNFSGKLPENLGI--VFQKLIYLDVSKNSFEGNIPYSI-----SEMKELITLDLSRNNFSGELPRSIFSSC---LSLETL 307 (487)
Q Consensus 238 ~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L 307 (487)
+.+.+.....+.. ..++|++|++++|.+.+..+..+ ..+++|+.+++++|.+ .+|...+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 8766433222211 13589999999998887677666 7889999999999888 5663322323 579999
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCC--CchhhhcccccccEEecCCcc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG--DIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 385 (487)
++++|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..+++|++|++++|.
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 99999876432 22578999999999999987778888899999999999999886 456778999999999999999
Q ss_pred ccCcchh-hhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcc
Q 036411 386 LQGSIPV-QLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463 (487)
Q Consensus 386 ~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 463 (487)
+.+..|. .+..+++|+.|++++|+++.. +..+. ++|+.|++++|+++. +|..+..+++|+.|++++|+++...+.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHH
Confidence 9864555 477889999999999998532 22221 799999999999995 455556899999999999999743334
Q ss_pred cccccCceeEEeccCCccCCCC
Q 036411 464 QINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 464 ~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
.+..+++|++|++++||+.+..
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCCCH
T ss_pred HhccCCcccEEECcCCCCcccC
Confidence 5899999999999999998753
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.7e-40 Score=327.07 Aligned_cols=448 Identities=20% Similarity=0.157 Sum_probs=354.5
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCC-cchhccCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH-LPQCLNNL 80 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l 80 (487)
++|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+... .+..+.++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 468999999999999999988888899999999999999999974 3455699999999999999999753 46678999
Q ss_pred CCccEEeccCcc-ccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCce
Q 036411 81 THLKVLDISYNQ-LSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKV 159 (487)
Q Consensus 81 ~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 159 (487)
++|++|++++|. +....+..+..+++|++|++++|.+.+. ....++.+++|++++++.+.. ...+...+..+++|+.
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRY 200 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCcc-cccchhhHhhcccccE
Confidence 999999999998 4444446889999999999999998743 456788899999999977643 3333333445789999
Q ss_pred eecccccccccc----cccccCCcccEEeCCCCcccCCcchHh---hhcCCCCcEEEcccCCCCCCCCC-----CCCcCC
Q 036411 160 LQLSHCHLNVNS----SFLLHQHHLKFLDLSHNQLVGNFPTWL---LQNNTGLEVLILWNNSFSGILPR-----LPNAKY 227 (487)
Q Consensus 160 L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~ 227 (487)
|++++|.+...+ .....+++|+.++++++.+.+..+..+ ...++.++.+.+.+|.+...... .....+
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 999999885532 233457899999999998865444433 24578999999999876543211 123567
Q ss_pred CCCcEEEccCCcccccC----CcccccccCceEEEEccCCCCCCCcchhh-hccccCcEEecccccCCCCCch--hhhcC
Q 036411 228 DKLRHLDISTNNFSGKL----PENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRNNFSGELPR--SIFSS 300 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~~~~ 300 (487)
++++.+.+.++.+.... ...+....++|++|++++|.+. ..+..+ ..+++|+.|++++|.+.+.++. ..++.
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 88999999888654221 1112234578999999999987 455444 6799999999999999854543 23577
Q ss_pred CCCCcEEECCCCccCCCCC--cCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccE
Q 036411 301 CLSLETLDLSNNNFYGQLF--PNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 378 (487)
+++|+.|++++|.+.+... ..+..+++|++|++++|.+. ..+..+..+++|++|++++|++.. ++..+ .++|++
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~ 435 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEV 435 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSE
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceE
Confidence 8999999999999875432 44788999999999999998 667778888999999999999873 33332 268999
Q ss_pred EecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 379 LLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 379 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
|++++|++++. ...+++|+.|++++|+++..+. ...+++|++|++++|++++..+.++..+++|+.|++++|++.
T Consensus 436 L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 436 LDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp EECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred EECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 99999998853 2578999999999999985544 567899999999999999998888999999999999999987
Q ss_pred ccCc
Q 036411 459 GRIP 462 (487)
Q Consensus 459 ~~~~ 462 (487)
+..+
T Consensus 511 ~~~~ 514 (549)
T 2z81_A 511 CSCP 514 (549)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 6554
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-40 Score=328.60 Aligned_cols=415 Identities=18% Similarity=0.203 Sum_probs=266.0
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCc---c-----------------------------cccc--
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSR---T-----------------------------KQGI-- 53 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~-----------------------------~~~~-- 53 (487)
.+++.|+|+++.+.+.+|..++.+++|++|++++|.+.... . +..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999999999999999999999999999651000 0 0000
Q ss_pred -----------------cCCCCCcEEECC--CCccCCCcchhccCCCCccEEeccCccccCC-----------------c
Q 036411 54 -----------------CNLKNLLELDLS--SNNFEGHLPQCLNNLTHLKVLDISYNQLSGN-----------------F 97 (487)
Q Consensus 54 -----------------~~~~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~ 97 (487)
.....++.+.+. .+.++. +|..++++++|++|++++|.++.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 001122222222 344553 666677777777777777776643 6
Q ss_pred ccccc--CCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccc-ccccccc------CCCCCceeeccccccc
Q 036411 98 PSVLT--NLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ-VKTENWL------PTYPLKVLQLSHCHLN 168 (487)
Q Consensus 98 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~------~~~~L~~L~l~~~~~~ 168 (487)
|..+. ++++|++|++++|.+.+.. +..+..+++|++|+++.+..+.. ..+..+. .+++|++|++++|.++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSC-CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred chhhhhcccCCCCEEEecCCcCCccC-hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 66666 7777777777777665433 25566667777777766542322 1111122 2367777777777777
Q ss_pred cccc--ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCC-CcEEEccCCcccccCC
Q 036411 169 VNSS--FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDK-LRHLDISTNNFSGKLP 245 (487)
Q Consensus 169 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 245 (487)
.++. .+..+++|+.|++++|.+.+.++ .+..+++|+.|++++|.+... +. .+..+++ |+.|++++|.+. .+|
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~l-p~-~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEI-PA-NFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEEC-CT-TSEEECTTCCEEECCSSCCS-SCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccc-cH-hhhhhcccCcEEEccCCcCc-ccc
Confidence 6666 67777788888888877765666 345677777888777776633 22 2466677 888888888777 566
Q ss_pred cccccc-cCceEEEEccCCCCCCCcchhhh-------ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCC
Q 036411 246 ENLGIV-FQKLIYLDVSKNSFEGNIPYSIS-------EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ 317 (487)
Q Consensus 246 ~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 317 (487)
..+... +++|++|++++|.+.+..+..+. .+++|+.|++++|.+. .+|...|..+++|+.|++++|.+...
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCc
Confidence 554322 24788888888888766666665 6678888888888887 78877777788888888888887633
Q ss_pred CCcCCcCC-------CCccEEEcCCCccccccccccc--CCCcccEEEccCCccCCCchhhhcccccccEEecC------
Q 036411 318 LFPNFMNL-------THLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS------ 382 (487)
Q Consensus 318 ~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------ 382 (487)
....+... ++|+.|++++|.++ ..+..+. .+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 33233222 26777777777766 4444444 66677777777777664 56666667777777763
Q ss_pred CccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccC
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 434 (487)
+|.+.+..|..+..+++|+.|++++|++...+..+. ++|+.|++++|++.
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCc
Confidence 344455555556666666666666666543333332 55555555555544
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=320.34 Aligned_cols=437 Identities=20% Similarity=0.171 Sum_probs=345.9
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+.+++.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 789999999999988888899999999999999999874 34578999999999999999998 56665 899999999
Q ss_pred ccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccc--eEEEeccCCCc-cccccccccCCC-CCceeec
Q 036411 88 ISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL--EVLVLSSGNDM-LQVKTENWLPTY-PLKVLQL 162 (487)
Q Consensus 88 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~~-~~~~~~~~~~~~-~L~~L~l 162 (487)
+++|.++. ..|..+..+++|++|++++|.+.+ ..+..+++| +.++++++... .......+..+. ....+++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 99999986 467899999999999999999875 356778888 99999876541 122222233322 2335666
Q ss_pred ccccc--cccccccccCCcccEEeCCCCc-------ccCCcchHhhhcCCCCcEEEcccCCCCCCCCCC--CCcCCCCCc
Q 036411 163 SHCHL--NVNSSFLLHQHHLKFLDLSHNQ-------LVGNFPTWLLQNNTGLEVLILWNNSFSGILPRL--PNAKYDKLR 231 (487)
Q Consensus 163 ~~~~~--~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~ 231 (487)
.++.+ ......+..+++|+.+++++|. +.+.++ .+..++.|+.+.+.++.+....... .....++|+
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 66665 2334456678999999998886 333332 3457899999999887654211000 001235899
Q ss_pred EEEccCCcccccCCcccc----cccCceEEEEccCCCCCCCcchhhhcc---ccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 232 HLDISTNNFSGKLPENLG----IVFQKLIYLDVSKNSFEGNIPYSISEM---KELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
.|++++|.+.+.+|..++ ..+++|+.++++++.+. .....+..+ ++|+.|++++|.+. ..+. +..+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEecccccccee-cchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCcc
Confidence 999999998877777663 45689999999999882 222344433 67999999999986 4432 2678999
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccc--cccccccCCCcccEEEccCCccCCCchh-hhcccccccEEec
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG--KMADGLLSSTLLDVLDVSNNKLSGDIPH-WIGNFSVLWLLLM 381 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 381 (487)
++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|++.+.+|. .+..+++|++|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 999999999988788889999999999999999985 4456788899999999999999875665 4888999999999
Q ss_pred CCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 382 SENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
++|.+++..+..+. ++|+.|++++|+++..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++.+.
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 99999866666554 799999999999987777778999999999999999977666688999999999999998653
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.9e-39 Score=326.29 Aligned_cols=437 Identities=18% Similarity=0.164 Sum_probs=330.0
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEc-cCccccCCcccccc---------------------------------
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNL-RYNKIEGSRTKQGI--------------------------------- 53 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~--------------------------------- 53 (487)
.+++.|+|+++.+.+.+|+.++.+++|++|++ +++.+.+.......
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 77765433111100
Q ss_pred -----------------cCCCCCcEEECCC--CccCCCcchhccCCCCccEEeccCccccC-----------------Cc
Q 036411 54 -----------------CNLKNLLELDLSS--NNFEGHLPQCLNNLTHLKVLDISYNQLSG-----------------NF 97 (487)
Q Consensus 54 -----------------~~~~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~ 97 (487)
.....++.+.+.. |.+.. +|..+.++++|++|++++|.++. .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1112233333333 45553 77788888888888888888875 26
Q ss_pred ccccc--CCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccc--ccc------ccccCCCCCceeecccccc
Q 036411 98 PSVLT--NLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ--VKT------ENWLPTYPLKVLQLSHCHL 167 (487)
Q Consensus 98 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~------~~~~~~~~L~~L~l~~~~~ 167 (487)
|..+. ++++|++|++++|.+.+..+ ..+..+++|+.|+++++..+.. ++. ..+...++|+.|++++|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 77766 88888888888888765543 6788888888888887753332 222 1344566899999999999
Q ss_pred ccccc--ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCC-CcEEEccCCcccccC
Q 036411 168 NVNSS--FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDK-LRHLDISTNNFSGKL 244 (487)
Q Consensus 168 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 244 (487)
..++. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.. .+. .+..+++ |+.|++++|.+. .+
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~-lp~-~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEE-IPE-DFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSC-CCT-TSCEECTTCCEEECCSSCCC-SC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCcccc-chH-HHhhccccCCEEECcCCCCC-cC
Confidence 88887 8889999999999999987 677 46688999999999999883 333 3477788 999999999988 67
Q ss_pred Ccccccc-cCceEEEEccCCCCCCCcch---hhh--ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCC
Q 036411 245 PENLGIV-FQKLIYLDVSKNSFEGNIPY---SIS--EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL 318 (487)
Q Consensus 245 ~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 318 (487)
|..+... .++|+.|++++|.+.+..+. .+. ..++|+.|++++|.+. .+|...+..+++|+.|++++|.+....
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence 7655432 23599999999998764432 122 3458999999999998 899988888999999999999987433
Q ss_pred CcCCc-------CCCCccEEEcCCCccccccccccc--CCCcccEEEccCCccCCCchhhhcccccccEEecCC------
Q 036411 319 FPNFM-------NLTHLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE------ 383 (487)
Q Consensus 319 ~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------ 383 (487)
...+. ++++|+.|++++|.+. ..+..+. .+++|+.|++++|++++ +|..+..+++|+.|++++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 33332 2338999999999998 6666666 89999999999999986 788899999999999976
Q ss_pred ccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcc
Q 036411 384 NYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 457 (487)
|.+.+..|..+..+++|+.|++++|++...+..+. ++|+.|++++|++....+..+.....+..+.|.+++.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 66666778888888888888888888865555543 6888888888887766555554444455555555554
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.4e-38 Score=317.30 Aligned_cols=470 Identities=22% Similarity=0.183 Sum_probs=334.4
Q ss_pred cccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEec
Q 036411 9 QLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDI 88 (487)
Q Consensus 9 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 88 (487)
++++|+|++|.+.+..+.+|+.+++|++|++++|.+.+ +.+++|+++++|++|++++|++....+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 78999999999988888899999999999999999873 45678999999999999999998666678999999999999
Q ss_pred cCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCC----CCceeeccc
Q 036411 89 SYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTY----PLKVLQLSH 164 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~ 164 (487)
++|.++...+..|.++++|++|++++|.+........++.+++|++|+++++. +..+....+.... ....++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhccc
Confidence 99999877777899999999999999998766667788999999999997753 3333333333222 233566666
Q ss_pred ccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCC----------------------------
Q 036411 165 CHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS---------------------------- 216 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------------- 216 (487)
+.+...+........+..+++.++..........+..+..++...+......
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 6665544444444455566665554322222333333444433322111000
Q ss_pred --CC--CCCCCCcCCCCCcEEEccCCcccccCCccc------------------ccccCceEEEEccCCCCCCCcchhhh
Q 036411 217 --GI--LPRLPNAKYDKLRHLDISTNNFSGKLPENL------------------GIVFQKLIYLDVSKNSFEGNIPYSIS 274 (487)
Q Consensus 217 --~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~~~~~~~~~~~ 274 (487)
.. .....+....+++.+.+..+.+........ ...++.++.+.+.++..... ....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccc
Confidence 00 000011222334444443333221100000 00123444455544443321 1233
Q ss_pred ccccCcEEecccccCCCC--CchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccc-ccccccCCCc
Q 036411 275 EMKELITLDLSRNNFSGE--LPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGK-MADGLLSSTL 351 (487)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 351 (487)
.+++|+.+++++|.+... .+. .+..+.+|+.+++..+.... ....+..+++|+.+++.++..... ....+..+.+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccc
Confidence 567888888888776411 222 23457788888888776543 344567889999999988876533 3355678889
Q ss_pred ccEEEccCCccCCCchhhhcccccccEEecCCcccc-CcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEee
Q 036411 352 LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ-GSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLH 429 (487)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~ 429 (487)
++.++++.|.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|+++.. +..+..+++|++|+++
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 999999999998888888999999999999999754 35677889999999999999999755 5567799999999999
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCcccccCccccccc-CceeEEeccCCccCCC
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINEL-SNLHFLLLRGNSLQGR 484 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~ 484 (487)
+|++++..+.++..+++|+.|++++|++++..|..+.++ ++|+.|++++||+.+.
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999989999999999999999999999999999998 5899999999998763
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-38 Score=319.40 Aligned_cols=430 Identities=20% Similarity=0.232 Sum_probs=266.6
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccC------C---------------------------Ccchhcc
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFE------G---------------------------HLPQCLN 78 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~---------------------------~~~~~~~ 78 (487)
.+++.|+++++.+.+..+ ..++++++|++|++++|.+. . ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 489999999999876554 67999999999999999651 0 0000000
Q ss_pred -------------------CCCCccEEecc--CccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEe
Q 036411 79 -------------------NLTHLKVLDIS--YNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVL 137 (487)
Q Consensus 79 -------------------~l~~L~~L~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 137 (487)
....++.+.+. .|.++. +|..+.++++|++|++++|.+.+...... ..+.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~------ 230 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA--WENE------ 230 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS--CSCT------
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc--cccc------
Confidence 01122222222 456665 88899999999999999999876310000 0000
Q ss_pred ccCCCcccccccccc--CCCCCceeecccccc-cccccccccCCcccEEeCCCCc-ccC-CcchHhhh-----cCCCCcE
Q 036411 138 SSGNDMLQVKTENWL--PTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQ-LVG-NFPTWLLQ-----NNTGLEV 207 (487)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~~~~L~~ 207 (487)
.........+..+. .+++|++|++++|.+ ..++..+..+++|+.|++++|. +++ .+|..+.. .+++|++
T Consensus 231 -~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 231 -NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp -TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred -ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 00000000112222 445556666655554 4455566666677777777776 554 45544321 2366777
Q ss_pred EEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhcccc-CcEEeccc
Q 036411 208 LILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKE-LITLDLSR 286 (487)
Q Consensus 208 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~ 286 (487)
|++++|.+........+..+++|+.|++++|.+.+.++ .+ ..+++|++|++++|.+. .++..+..+++ |+.|++++
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 77777766622210123566677777777777665556 33 23467777777777766 55556666777 77777777
Q ss_pred ccCCCCCchhhhcCC--CCCcEEECCCCccCCCCCcCCc-------CCCCccEEEcCCCcccccccccccCCCcccEEEc
Q 036411 287 NNFSGELPRSIFSSC--LSLETLDLSNNNFYGQLFPNFM-------NLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (487)
|.+. .+|.. +... ++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.......+..+++|+.|++
T Consensus 387 N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 387 NKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred CcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 7776 66653 2333 3677777777777666555555 5667777777777776433344445677777777
Q ss_pred cCCccCCCchh-hhcc-------cccccEEecCCccccCcchhhhc--cCcCCcEEeccCCccccccccccCCCcceEEE
Q 036411 358 SNNKLSGDIPH-WIGN-------FSVLWLLLMSENYLQGSIPVQLG--NLESLEFIDISENGLSVSMVSLSNLSSVKHIY 427 (487)
Q Consensus 358 ~~~~~~~~~~~-~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~ 427 (487)
++|+++ .+|. .+.. +++|++|++++|.++ ..|..+. .+++|+.|++++|+++..+..+..+++|+.|+
T Consensus 465 s~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 465 MGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542 (636)
T ss_dssp CSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEE
T ss_pred CCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEE
Confidence 777776 3333 2222 227777777777776 5555554 77777777777777766666666777777777
Q ss_pred e------eCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 428 L------HNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 428 l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
+ ++|.+.+..|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++.
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 7 34566666777777777777777777777 45665544 67777777777665
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.4e-39 Score=318.93 Aligned_cols=458 Identities=21% Similarity=0.216 Sum_probs=338.4
Q ss_pred cccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEE
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 86 (487)
+...++++++++.+.+ +|..+. ++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 4455889999998775 454443 799999999999874 345679999999999999999987778889999999999
Q ss_pred eccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCC--ceeeccc
Q 036411 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL--KVLQLSH 164 (487)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~ 164 (487)
++++|.++ .+|.. .+++|++|++++|.+.+...+..++.+++|++|+++++.- .. ..+...+.| +.+++.+
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ---LDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT---TTTGGGTTSCEEEEEEEE
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc---CchhhhhhceeeEEEeec
Confidence 99999988 45555 7899999999999987655557889999999999987542 22 234444555 9999988
Q ss_pred ccc--c-ccccccccCC-cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCC-----CCCCCCCCcCCCCCcEEEc
Q 036411 165 CHL--N-VNSSFLLHQH-HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS-----GILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 165 ~~~--~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~L~~L~l 235 (487)
|.+ . ..+..+..+. ..-.+++++|.+.+..+...+..+++|+.++++++... ...+ .+..+++++.+++
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L 256 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTL 256 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEe
Confidence 876 2 2333444432 12255777777766666666667788889988876411 0000 1245677888888
Q ss_pred cCCcccccCCcccc--cccCceEEEEccCCCCCCCcchhh-----hccccCcEEecccccCCCCCchhhhcC---CCCCc
Q 036411 236 STNNFSGKLPENLG--IVFQKLIYLDVSKNSFEGNIPYSI-----SEMKELITLDLSRNNFSGELPRSIFSS---CLSLE 305 (487)
Q Consensus 236 ~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~ 305 (487)
..+.+.+.....+. ...++|++|++++|.+.+..+..+ ..++.|+.+++..+.+ .+|...+.. ..+|+
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 77665432211111 113489999999998886666555 5666667777776665 455332221 25799
Q ss_pred EEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCC--CchhhhcccccccEEecCC
Q 036411 306 TLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG--DIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~ 383 (487)
.|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|+.|++++|++++ ..|..+..+++|++|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 9999999875432 22578999999999999987788888999999999999999875 3456789999999999999
Q ss_pred ccccCcch-hhhccCcCCcEEeccCCccccccccccCC-CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccC
Q 036411 384 NYLQGSIP-VQLGNLESLEFIDISENGLSVSMVSLSNL-SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461 (487)
Q Consensus 384 ~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (487)
|.+.+..+ ..+..+++|+.|++++|+++... +..+ ++|++|++++|.++.+ |..+..+++|+.|++++|+++. +
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~-l 488 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKS-V 488 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG--GSSCCTTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCC-C
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcch--hhhhcCcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCC-C
Confidence 99986344 45788899999999999985322 2233 7999999999999865 4444489999999999999984 5
Q ss_pred cc-cccccCceeEEeccCCccCCCC
Q 036411 462 PH-QINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 462 ~~-~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
|. .+..+++|+.|++++||+.+..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCc
Confidence 54 4899999999999999998764
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-37 Score=314.31 Aligned_cols=421 Identities=19% Similarity=0.197 Sum_probs=318.9
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEEC-CCCccCCCcchh----------------------------------
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL-SSNNFEGHLPQC---------------------------------- 76 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~---------------------------------- 76 (487)
.+++.|+++++.+.+.++ ..++++++|+.|++ +++.+....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 579999999999976554 67999999999999 777543221110
Q ss_pred ------c-----------cCCCCccEEeccC--ccccCCccccccCCCCCcEEeccccccCcc----------------h
Q 036411 77 ------L-----------NNLTHLKVLDISY--NQLSGNFPSVLTNLTSLEYLDLSFIDFQGT----------------F 121 (487)
Q Consensus 77 ------~-----------~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------~ 121 (487)
+ .....++.+.+.. |.++. +|..+.++++|+.|++++|.+.+. .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 1112233333333 55665 788999999999999999998872 2
Q ss_pred hHHHhh--ccccceEEEeccCCCccccccccccCCCCCceeeccccc-cc--ccccccccC-------CcccEEeCCCCc
Q 036411 122 LINSLA--NHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH-LN--VNSSFLLHQ-------HHLKFLDLSHNQ 189 (487)
Q Consensus 122 ~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~~~-------~~L~~L~l~~~~ 189 (487)
.+..++ .+++|+.|+++.+.....++ ..+..+++|+.|++++|. ++ .+|..+..+ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 444545 99999999998876555554 567888999999999997 65 366655544 499999999999
Q ss_pred ccCCcch-HhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCc-eEEEEccCCCCCC
Q 036411 190 LVGNFPT-WLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQK-LIYLDVSKNSFEG 267 (487)
Q Consensus 190 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 267 (487)
+. .++. ..+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .++..+... ++ |++|++++|.+.
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAF-TDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEE-CTTCCEEECCSSCCC-
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhc-cccCCEEECcCCCCC-
Confidence 98 7776 34568999999999999988 333 5588899999999999998 777776554 56 999999999988
Q ss_pred Ccchhhhccc--cCcEEecccccCCCCCchhh--hc--CCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccc
Q 036411 268 NIPYSISEMK--ELITLDLSRNNFSGELPRSI--FS--SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGK 341 (487)
Q Consensus 268 ~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~--~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 341 (487)
.++..+...+ +|+.|++++|.+.+.+|... +. .+++|+.|++++|.+.......+..+++|+.|++++|.+...
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 6666666554 49999999999986554311 11 345899999999999854433445789999999999999833
Q ss_pred ccccccC-------CCcccEEEccCCccCCCchhhhc--ccccccEEecCCccccCcchhhhccCcCCcEEeccCC----
Q 036411 342 MADGLLS-------STLLDVLDVSNNKLSGDIPHWIG--NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN---- 408 (487)
Q Consensus 342 ~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~---- 408 (487)
....+.. +++|+.|++++|+++ .+|..+. .+++|+.|++++|.+.+ .|..+..+++|+.|++++|
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 3333322 239999999999998 6777776 99999999999999985 7888889999999999874
Q ss_pred --cc-ccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccc
Q 036411 409 --GL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINE 467 (487)
Q Consensus 409 --~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 467 (487)
.+ ...+..+..+++|+.|++++|.+. .+|..+. ++|+.|+|++|++....+..+..
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred cccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 44 345556677888888888888884 4454443 68888888888876554444433
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.4e-36 Score=289.73 Aligned_cols=367 Identities=21% Similarity=0.228 Sum_probs=226.1
Q ss_pred CCCcEEECCCCccCCCcchhccCCCCccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccceEE
Q 036411 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVL 135 (487)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 135 (487)
++|++|+++++.+....+..+.++++|++|++++|.+.. ..+..|..+++|++|++++|.+.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~----------------- 92 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL----------------- 92 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-----------------
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-----------------
Confidence 455555555555554445555555555555555554432 22334455555555555544432
Q ss_pred EeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcch-HhhhcCCCCcEEEcccCC
Q 036411 136 VLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPT-WLLQNNTGLEVLILWNNS 214 (487)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 214 (487)
...+..+..+++|++|++++|.+.+..+. ..+..+++|++|++++|.
T Consensus 93 --------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 93 --------------------------------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp --------------------------------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred --------------------------------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc
Confidence 11233455566777777777766532222 224467777777777777
Q ss_pred CCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccc-cCceEEEEccCCCCCCCcchh--------hhccccCcEEecc
Q 036411 215 FSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIV-FQKLIYLDVSKNSFEGNIPYS--------ISEMKELITLDLS 285 (487)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~ 285 (487)
+....+...+..+++|+.|++++|.+.+..+..+... ..+++.|+++++.+.+..+.. +..+++|+.|+++
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 7655444335778899999999998886555554432 268999999999887543322 2245789999999
Q ss_pred cccCCCCCchhhhc--CCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccccccc--CCCcccEEEccCCc
Q 036411 286 RNNFSGELPRSIFS--SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNNK 361 (487)
Q Consensus 286 ~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 361 (487)
+|.+.+..+..++. ..++|+.+++++|...+.... ...++. .....+. ..++|+.|++++|.
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKD-------------PDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCC-------------CCTTTTGGGTTSCCCEEECCSSC
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccc-hhhhcc-------------CcccccccccccCceEEEecCcc
Confidence 99887555544332 237889999988865432111 000000 0011111 23566777777776
Q ss_pred cCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHh
Q 036411 362 LSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIA 440 (487)
Q Consensus 362 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 440 (487)
+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+..+++|++|++++|.+++..+.+
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 6666666666777777777777776655566666677777777777766433 344556677777777777777666666
Q ss_pred hhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 441 LLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 441 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777777777777777766555566777777777777777777666
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5e-36 Score=298.12 Aligned_cols=439 Identities=20% Similarity=0.184 Sum_probs=327.9
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+..|+.+++|++|++++|.+++ ..+++|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 789999999999988888899999999999999999874 34577999999999999999998 56655 899999999
Q ss_pred ccCccccCC-ccccccCCCCCcEEeccccccCcchhHHHhhccccc--eEEEeccCCCc-cccccccccCCC-CCceeec
Q 036411 88 ISYNQLSGN-FPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL--EVLVLSSGNDM-LQVKTENWLPTY-PLKVLQL 162 (487)
Q Consensus 88 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~~-~~~~~~~~~~~~-~L~~L~l 162 (487)
+++|.++.. .|..|.++++|++|++++|.+... .+..+++| ++++++.+... .......+.... ..-++++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999853 457899999999999999998752 34555666 99999876531 222222333222 1224566
Q ss_pred cccccc--ccccccccCCcccEEeCCCCcccC-Ccc--hHhhhcCCCCcEEEcccCCCCCCCCC--CCCcCCCCCcEEEc
Q 036411 163 SHCHLN--VNSSFLLHQHHLKFLDLSHNQLVG-NFP--TWLLQNNTGLEVLILWNNSFSGILPR--LPNAKYDKLRHLDI 235 (487)
Q Consensus 163 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l 235 (487)
.++.+. .....+..+++|+.+++++|...- .+. ...+..++.++.+.+.++.+...... ......++|+.|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 666652 233345568899999998874110 011 11245778888888877654321000 00012348999999
Q ss_pred cCCcccccCCcccc----cccCceEEEEccCCCCCCCcchhhh---ccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 236 STNNFSGKLPENLG----IVFQKLIYLDVSKNSFEGNIPYSIS---EMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 236 ~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
++|.+.+.+|..++ ..++.|+.+++..+.+. .....+. ...+|+.|++++|.+. ..+. ...+++|++|+
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~--~~~l~~L~~L~ 359 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFI-HMVC--PPSPSSFTFLN 359 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEE
T ss_pred eccEeeccccchhhhcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCcc-cccC--ccCCCCceEEE
Confidence 99988877777653 23456666666666551 1112222 2357999999999886 3332 25788999999
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccc--cccccccCCCcccEEEccCCccCCCch-hhhcccccccEEecCCcc
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG--KMADGLLSSTLLDVLDVSNNKLSGDIP-HWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 385 (487)
+++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|++++.+| ..+..+++|++|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 99999988788888999999999999999885 334567889999999999999987444 457889999999999999
Q ss_pred ccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 386 LQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 386 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+++..+..+. ++|+.|++++|+++..+..+..+++|++|++++|+++...+.++..+++|+.|++++|++.+.
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 8765555543 799999999999987777777999999999999999976665688899999999999998643
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-34 Score=289.35 Aligned_cols=443 Identities=23% Similarity=0.240 Sum_probs=290.1
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
++|.++++|++|+|++|.+....+.+|+.+++|++|++++|.+.+ ..++.|.++++|++|++++|.+....+..+++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 478999999999999999988888899999999999999999873 4556799999999999999999876667799999
Q ss_pred CccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccce----EEEec------------------
Q 036411 82 HLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLE----VLVLS------------------ 138 (487)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~l~l~------------------ 138 (487)
+|++|++++|.++. ..|..+..+++|++|++++|.+.+.. ...+..+++++ .++++
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 99999999999864 35778889999999999999876432 22222222211 22221
Q ss_pred -----cCCCccccccccccCCCCCceee------------------------------cccccc----cccccccccCCc
Q 036411 139 -----SGNDMLQVKTENWLPTYPLKVLQ------------------------------LSHCHL----NVNSSFLLHQHH 179 (487)
Q Consensus 139 -----~~~~~~~~~~~~~~~~~~L~~L~------------------------------l~~~~~----~~~~~~~~~~~~ 179 (487)
............+.....++... +..... ......+....+
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence 11100001111111112222111 111111 111122333455
Q ss_pred ccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEE
Q 036411 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLD 259 (487)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 259 (487)
++.+.+.++.+.. ... +.....++.+++.++.+.... ...++.++.+.+..+..... ... ..+++|+.++
T Consensus 308 l~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~-~~~--~~l~~L~~L~ 377 (635)
T 4g8a_A 308 VSSFSLVSVTIER-VKD--FSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNA-FSE--VDLPSLEFLD 377 (635)
T ss_dssp CSEEEEESCEEEE-CGG--GGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCB-CCC--CBCTTCCEEE
T ss_pred ccccccccccccc-ccc--cccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCC-ccc--ccccccccch
Confidence 6666666665432 222 234567777777777654332 23456677777776654422 111 1246788888
Q ss_pred ccCCCCCC--CcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCC-CCcCCcCCCCccEEEcCCC
Q 036411 260 VSKNSFEG--NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ-LFPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 260 l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 336 (487)
+++|.+.. ..+.......+++.+++..+... ..+.. |..+++|+.+++.++..... ....+..+++++.+++++|
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred hhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhcccccccccccccccccccccccccc
Confidence 88777642 23344556677777777777654 33332 45677777777777654332 2344566777777777777
Q ss_pred cccccccccccCCCcccEEEccCCccC-CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccc-
Q 036411 337 HFSGKMADGLLSSTLLDVLDVSNNKLS-GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM- 414 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~- 414 (487)
.+....+..+..+++++.|++++|... ...|..+..+++|++|++++|++++..|..|..+++|+.|++++|+++...
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 777666666777777777777777643 345666777777777888777777666777777777777888777775443
Q ss_pred ccccCCCcceEEEeeCcccCCcchHhhhcc-CcceEEeCCCCccc
Q 036411 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKFF 458 (487)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 458 (487)
..+..+++|+.|++++|++++..+.++..+ ++|+.|++++|++.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 345677777788887777777777777665 57777887777764
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.2e-35 Score=282.78 Aligned_cols=362 Identities=23% Similarity=0.234 Sum_probs=197.2
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+..++.+++|++|+++++.+.+...+..|.++++|++|++++|.+....|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777776666667777777777777777765445556677777777777777777655667777777777777
Q ss_pred ccCccccCCcccc--ccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCC--CCCceeecc
Q 036411 88 ISYNQLSGNFPSV--LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPT--YPLKVLQLS 163 (487)
Q Consensus 88 l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~ 163 (487)
+++|.++...+.. +..+++|++|++++|.+.+..+...+..+++|++++++++.. .......+... ..++.+++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccChhhhhccccccccccccc
Confidence 7777776533333 667777777777777776544444466777777777765432 22222222222 456666666
Q ss_pred cccccccccc---------cccCCcccEEeCCCCcccCCcchHhhhc--CCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 164 HCHLNVNSSF---------LLHQHHLKFLDLSHNQLVGNFPTWLLQN--NTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 164 ~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
++.+...+.. +..+++|+.|++++|.+.+..+..+... .+.++.+.++++........
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------- 257 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------- 257 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----------
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----------
Confidence 6665333221 2234566666666666654444433321 24555555555432211000
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhh--ccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS--EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+.+.......+. ..++|+.|++++|.+. ..+...|..+++|++|+++
T Consensus 258 -----------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 258 -----------------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp -----------------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECT
T ss_pred -----------------------------hhhhccCcccccccccccCceEEEecCcccc-ccchhhcccCCCCCEEECC
Confidence 0000000000111 1234444445444444 2223333444555555555
Q ss_pred CCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcc
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI 390 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 390 (487)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 55544444444445555555555555554444444555555555555555555444555555555555555555555433
Q ss_pred hhhhccCcCCcEEeccCCccc
Q 036411 391 PVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 391 ~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+..+..+++|+.|++++|++.
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBC
T ss_pred HhHhccCCcccEEEccCCCcc
Confidence 444455555555555555554
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-33 Score=271.47 Aligned_cols=394 Identities=22% Similarity=0.218 Sum_probs=196.6
Q ss_pred ccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCC-------------cEEECCCCccCCC
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL-------------LELDLSSNNFEGH 72 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~ 72 (487)
+.++|++|+++++.+ +.+|..++++++|++|++++|.+.+.. +..++++++| ++|+++++.++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-CcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 457899999999887 678888999999999999999876443 4557777765 888888887763
Q ss_pred cchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCcccccccccc
Q 036411 73 LPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWL 152 (487)
Q Consensus 73 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 152 (487)
+|. -.++|++|++++|.++. +|.. .++|++|++++|.+.+.. ..
T Consensus 86 lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~------~~----------------------- 129 (454)
T 1jl5_A 86 LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS------DL----------------------- 129 (454)
T ss_dssp CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC------SC-----------------------
T ss_pred CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc------CC-----------------------
Confidence 343 13678888888887774 4432 367888888777665310 00
Q ss_pred CCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 153 PTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
.++|++|++++|.++.++ .+..+++|++|++++|.+. .++. ..++|++|++++|.+.... .+..+++|+.
T Consensus 130 -~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~l~---~~~~l~~L~~ 199 (454)
T 1jl5_A 130 -PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEELP---ELQNLPFLTA 199 (454)
T ss_dssp -CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC---CCTTCTTCCE
T ss_pred -CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCcCc---cccCCCCCCE
Confidence 035666666666665444 3556666666666666655 2332 2346666666666655432 2356666666
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (487)
|++++|.+.+ ++.. +++|++|++++|.+. ..+ .+..+++|+.|++++|.+. .+|. .+++|+.|++++|
T Consensus 200 L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N 267 (454)
T 1jl5_A 200 IYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDN 267 (454)
T ss_dssp EECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSS
T ss_pred EECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCC
Confidence 6666666552 2321 246667777776665 333 3566666777777766665 4443 1356677777766
Q ss_pred ccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccc-ccccEEecCCccccCcch
Q 036411 313 NFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNF-SVLWLLLMSENYLQGSIP 391 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~ 391 (487)
.+.+. +. .+++|+.|++++|.+.+. +. ..++|+.|++++|++++ ++ .. ++|++|++++|.+++ .|
T Consensus 268 ~l~~l-~~---~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 268 YLTDL-PE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp CCSCC-CC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CC
T ss_pred ccccc-Cc---ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cc
Confidence 66542 21 135666777776666531 11 12466667776666653 11 12 366666776666653 33
Q ss_pred hhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC--cchHhhhcc-------------CcceEEeCCCCc
Q 036411 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING--LIPIALLRS-------------STLLTLDLRDNK 456 (487)
Q Consensus 392 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~ 456 (487)
.. +++|+.|++++|.++..+. .+++|++|++++|.+++ ..|..+..+ ++|+.|++++|+
T Consensus 334 ~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 334 AL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred cc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 22 3566667776666654333 35666677776666665 344444444 678888888888
Q ss_pred ccc--cCcccccccCceeEEeccCCccCCCCC
Q 036411 457 FFG--RIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 457 ~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
+++ .+| ++++.|.+.+|.+.+.+|
T Consensus 408 l~~~~~iP------~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 408 LREFPDIP------ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp --------------------------------
T ss_pred CCccccch------hhHhheeCcCcccCCccc
Confidence 764 333 256667777777766654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-32 Score=266.14 Aligned_cols=346 Identities=27% Similarity=0.301 Sum_probs=231.3
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEE
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 110 (487)
+++++.|+++++.+... ..+..+++|++|++++|.+.+. +. +.++++|++|++++|.++...+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l---~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccC---cchhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45677777776666522 1366667777777777766633 22 6667777777777776664433 6666777777
Q ss_pred eccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcc
Q 036411 111 DLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQL 190 (487)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 190 (487)
++++|.+.+. +. +..+++|++|++++|.+...+ .+..+++|+.|+++ +.+
T Consensus 118 ~L~~n~l~~~--------------------------~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 118 TLFNNQITDI--------------------------DP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQV 167 (466)
T ss_dssp ECCSSCCCCC--------------------------GG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESC
T ss_pred ECCCCCCCCC--------------------------hH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-Ccc
Confidence 7766655421 11 455567777777777775554 36778888888885 333
Q ss_pred cCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc
Q 036411 191 VGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 270 (487)
. .... +..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+.+.
T Consensus 168 ~-~~~~--~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 168 T-DLKP--LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp C-CCGG--GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--
T ss_pred c-Cchh--hccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--
Confidence 3 2222 557788888888888765442 24667788888888887764332 22357788888888877643
Q ss_pred hhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 271 YSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
..+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..++
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred hhhhcCCCCCEEECCCCccc-cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence 34667778888888888776 4443 5677788888888887765332 6677788888888877764333 56677
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|+.|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++....+ +..+++|+.|++++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 384 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccC
Confidence 78888888887776554 66777788888887777643 356677778888888777764444 66777777888777
Q ss_pred cccCCc
Q 036411 431 NAINGL 436 (487)
Q Consensus 431 ~~~~~~ 436 (487)
|.+++.
T Consensus 385 n~~~~~ 390 (466)
T 1o6v_A 385 QAWTNA 390 (466)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 777753
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.2e-32 Score=263.37 Aligned_cols=347 Identities=26% Similarity=0.310 Sum_probs=235.3
Q ss_pred ccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccE
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKV 85 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 85 (487)
.+++++.|++.++.+... + .+..+++|++|++++|.+.+.. . +.++++|++|++++|.+....+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 468999999999976553 3 4888999999999999987443 2 9999999999999999985544 899999999
Q ss_pred EeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccc
Q 036411 86 LDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHC 165 (487)
Q Consensus 86 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 165 (487)
|++++|.++...+ +..+++|++|++++|.+... ..+..+++|+++.+.. ...... .+..+++|+.|++++|
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~--~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGN--QVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEEE--SCCCCG--GGTTCTTCCEEECCSS
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC---hhhccCCcccEeecCC--cccCch--hhccCCCCCEEECcCC
Confidence 9999999886533 88999999999999987753 2467777788777742 111111 1344445555555554
Q ss_pred cccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCC
Q 036411 166 HLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP 245 (487)
Q Consensus 166 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 245 (487)
.+...+ .+. .+++|++|++++|.+....+ ...+++|+.|++++|.+.+ ++
T Consensus 188 ~l~~~~-~l~-------------------------~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~~ 237 (466)
T 1o6v_A 188 KVSDIS-VLA-------------------------KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD-IG 237 (466)
T ss_dssp CCCCCG-GGG-------------------------GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-CG
T ss_pred cCCCCh-hhc-------------------------cCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc-ch
Confidence 443322 233 44455555555444433222 2345556666666555542 11
Q ss_pred cccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCC
Q 036411 246 ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNL 325 (487)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 325 (487)
. ...+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+.. .+..+
T Consensus 238 -~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l 308 (466)
T 1o6v_A 238 -T-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDIS--PISNL 308 (466)
T ss_dssp -G-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCG--GGGGC
T ss_pred -h-hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCch--hhcCC
Confidence 1 2234667777777777664433 666777777777777776 4444 566777777777777775433 25667
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
++|+.|++++|.+.+..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|.+.+..| +..+++|+.|++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 777777777777764443 56677788888888877654 456777888888888887775554 677788888888
Q ss_pred cCCccccc
Q 036411 406 SENGLSVS 413 (487)
Q Consensus 406 ~~~~~~~~ 413 (487)
++|+++..
T Consensus 383 ~~n~~~~~ 390 (466)
T 1o6v_A 383 NDQAWTNA 390 (466)
T ss_dssp CCEEEECC
T ss_pred cCCcccCC
Confidence 88877643
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.3e-33 Score=265.31 Aligned_cols=376 Identities=23% Similarity=0.256 Sum_probs=248.0
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCc-------------cEEeccCccccCCc
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHL-------------KVLDISYNQLSGNF 97 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~ 97 (487)
.+.|+.|+++++.++ ..|..++++++|++|++++|.+....|..++++.+| ++|++++|.++. +
T Consensus 10 ~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred cccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 467788888888774 344567888888888888877766677777777665 555555554442 2
Q ss_pred cccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccC
Q 036411 98 PSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177 (487)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 177 (487)
|.. .++|++|++++|.+.+ ++. ..++|+.|++++|.+..++.. .
T Consensus 87 p~~---~~~L~~L~l~~n~l~~--------------------------lp~----~~~~L~~L~l~~n~l~~l~~~---~ 130 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE--------------------------LPE----LPQSLKSLLVDNNNLKALSDL---P 130 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS--------------------------CCC----CCTTCCEEECCSSCCSCCCSC---C
T ss_pred CCC---cCCCCEEEccCCcCCc--------------------------ccc----ccCCCcEEECCCCccCcccCC---C
Confidence 221 2445555555444331 221 125789999998887665543 2
Q ss_pred CcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEE
Q 036411 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIY 257 (487)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 257 (487)
++|++|++++|.+.+ ++. +..+++|++|++++|.+..... ..++|+.|++++|.+.+ ++ .+ ..+++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~lp~-----~~~~L~~L~L~~n~l~~-l~-~~-~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEE-LP-EL-QNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSS-CC-CC-TTCTTCCE
T ss_pred CCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcccCC-----CcccccEEECcCCcCCc-Cc-cc-cCCCCCCE
Confidence 799999999999884 663 6789999999999998875322 23589999999999884 55 33 45689999
Q ss_pred EEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCc
Q 036411 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337 (487)
Q Consensus 258 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (487)
|++++|.+.+ .+. ..++|+.|++++|.+. .+|. +..+++|++|++++|.+.+. +. .+++|+.|++++|.
T Consensus 200 L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 200 IYADNNSLKK-LPD---LPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNY 268 (454)
T ss_dssp EECCSSCCSS-CCC---CCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSC
T ss_pred EECCCCcCCc-CCC---CcCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCc
Confidence 9999999874 332 2368999999999998 8884 68899999999999998753 22 24899999999999
Q ss_pred ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccC-cCCcEEeccCCcccccccc
Q 036411 338 FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL-ESLEFIDISENGLSVSMVS 416 (487)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~ 416 (487)
+.+ .+.. .++|+.|++++|++++ ++. ..++|++|++++|.+.+ .+ .. ++|+.|++++|+++..+.
T Consensus 269 l~~-l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~- 334 (454)
T 1jl5_A 269 LTD-LPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPA- 334 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCC-
T ss_pred ccc-cCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccccc-
Confidence 874 3332 4789999999999874 221 12689999999998874 22 33 589999999999875443
Q ss_pred ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc--cCccccccc-------------CceeEEeccCCcc
Q 036411 417 LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG--RIPHQINEL-------------SNLHFLLLRGNSL 481 (487)
Q Consensus 417 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l-------------~~L~~L~l~~~~~ 481 (487)
.+++|++|++++|.++.... .+++|+.|++++|++++ .+|..++++ ++|+.|++++|++
T Consensus 335 --~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 335 --LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp --CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred --cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 35899999999999996543 46899999999999987 788888888 8999999999999
Q ss_pred CC--CCCC
Q 036411 482 QG--RIPN 487 (487)
Q Consensus 482 ~~--~~p~ 487 (487)
++ .+|.
T Consensus 409 ~~~~~iP~ 416 (454)
T 1jl5_A 409 REFPDIPE 416 (454)
T ss_dssp --------
T ss_pred Cccccchh
Confidence 97 7773
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=268.60 Aligned_cols=300 Identities=21% Similarity=0.171 Sum_probs=209.1
Q ss_pred CCCceeeccccccccc-ccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEE
Q 036411 155 YPLKVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHL 233 (487)
Q Consensus 155 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 233 (487)
+.++.|+++++.+... +..+..+++|+.|++++|.+. .+....+..+++|++|++++|.+...... .+..+++|+.|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCCEE
Confidence 3677888888777444 456777788888888888776 34334455777888888877776654433 34667778888
Q ss_pred EccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc
Q 036411 234 DISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313 (487)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 313 (487)
++++|.+....+..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|..+++|+.|++.+|.
T Consensus 110 ~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 110 DISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp ECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCC
T ss_pred ECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCc
Confidence 888777764433333 34567888888877776555666777777888888777776 6666667777778888887777
Q ss_pred cCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhh
Q 036411 314 FYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ 393 (487)
Q Consensus 314 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 393 (487)
+.+.....+..+++|+.|++++|...+..+.......+|++|++++|+++...+..+..+++|++|++++|.+....+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 76666666777777777777777665555555555557777777777777555566777777777777777777555566
Q ss_pred hccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 394 LGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 394 ~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+..+++|+.|++++|++... +..+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 77777777777777777533 445557777777777777777766666777777777777777764
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.4e-31 Score=248.38 Aligned_cols=305 Identities=21% Similarity=0.266 Sum_probs=243.3
Q ss_pred CCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 153 PTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
.++++++|++.++.+..++. +..+++|++|++++|.+. .++. +..+++|++|++++|.+.... .+..+++|+.
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch---HHcCCCcCCE
Confidence 44567777777777655543 666788888888888776 3443 567888888888888776542 3467888999
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (487)
|++++|.+.+ .+. ...+++|++|++++|...... ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|
T Consensus 115 L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 115 LYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTS
T ss_pred EECcCCcccC-chh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCC
Confidence 9998888763 333 334688999999999655333 34788999999999999887 5554 678899999999999
Q ss_pred ccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchh
Q 036411 313 NFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV 392 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 392 (487)
.+.+.. .+..+++|+.+++.+|.+.+... +..+++|++|++++|++++..+ +..+++|++|++++|.+... .
T Consensus 188 ~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 188 QIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred cccccc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 886533 37788999999999998874443 7788999999999999885544 88999999999999988753 4
Q ss_pred hhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCcee
Q 036411 393 QLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLH 472 (487)
Q Consensus 393 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 472 (487)
.+..+++|+.|++++|++... ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..| +..+++|+
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 678899999999999998754 567789999999999999998888999999999999999999986655 89999999
Q ss_pred EEeccCCccC
Q 036411 473 FLLLRGNSLQ 482 (487)
Q Consensus 473 ~L~l~~~~~~ 482 (487)
+|++++|+|.
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999986
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.6e-32 Score=259.20 Aligned_cols=357 Identities=22% Similarity=0.207 Sum_probs=187.8
Q ss_pred cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCC
Q 036411 25 LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNL 104 (487)
Q Consensus 25 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 104 (487)
+..++.+++|++|+++++.+.+. + .+..+++|++|++++|.+... + +..+++|++|++++|.++.. + +..+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred ccChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 33456667777777777776643 2 466777777777777776642 2 66677777777777766643 2 5666
Q ss_pred CCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEe
Q 036411 105 TSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLD 184 (487)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 184 (487)
++|++|++++|.+.+. .+..+++|++|++++|.++.++ +..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~l-----------------------------~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL-----------------------------DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp TTCCEEECCSSCCSCC-----------------------------CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCee-----------------------------cCCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 7777777766655421 0334455666666666654442 55667777777
Q ss_pred CCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCC
Q 036411 185 LSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNS 264 (487)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 264 (487)
+++|...+.++ +..+++|+.|++++|.+... ....+++|+.|++++|.+.+. + ...+++|++|++++|.
T Consensus 155 l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l----~l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 155 CHLNKKITKLD---VTPQTQLTTLDCSFNKITEL----DVSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC----CCTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSC
T ss_pred CCCCCcccccc---cccCCcCCEEECCCCcccee----ccccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCc
Confidence 77775443332 33556666666666665543 134555666666666655532 1 1223556666666665
Q ss_pred CCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccc
Q 036411 265 FEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD 344 (487)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 344 (487)
+++ .+ +..+++|+.|++++|.+. .++. +.+++|+.+++.++ +|+.|++++|...+..+
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 553 22 445555666666666555 3332 33445555544433 23334444444333332
Q ss_pred cccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcce
Q 036411 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVK 424 (487)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~ 424 (487)
+..+++|+.|++++|...+.+|. ..++|+.++++ .+++|+.|++++|+++.. .+..+++|+
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l--~l~~l~~L~ 342 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTELTEL--DVSHNTKLK 342 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSCC--CCTTCTTCS
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCCccccc--ccccCCcCc
Confidence 23455566666666654433332 11222222222 224555555555555432 244555555
Q ss_pred EEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 425 HIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 425 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
.|++++|++++. +.|..|++++|.+.+. ..+..|+.+++++|.++|.+|
T Consensus 343 ~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 343 SLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp EEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred EEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 555555555531 2333344444444322 233444555555555555555
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-31 Score=256.55 Aligned_cols=356 Identities=20% Similarity=0.199 Sum_probs=250.6
Q ss_pred cccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 82 (487)
+++++++|++|++++|.+.+. + .+..+++|++|++++|.+++. + +..+++|++|++++|.+... + ++++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 466789999999999988765 4 689999999999999999853 2 88999999999999999853 3 889999
Q ss_pred ccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeec
Q 036411 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQL 162 (487)
Q Consensus 83 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 162 (487)
|++|++++|.++.. + +..+++|++|++++|.+.+. .++.+++|++++++.+..+..+ .+..+++|+.|++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l 177 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDC 177 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEEC
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCccccc---ccccCCcCCEEEC
Confidence 99999999999864 3 88999999999999998863 3778889999999877655544 3556678888888
Q ss_pred ccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccc
Q 036411 163 SHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 242 (487)
++|.++.++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+... +...+++|+.|++++|.+.+
T Consensus 178 s~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i----p~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITELD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI----DVTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCCCC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC
T ss_pred CCCccceec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc----CccccCCCCEEEeeCCcCCC
Confidence 888876655 66778888888888877643 2 44677888888888777653 24567778888888777763
Q ss_pred cCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCC
Q 036411 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNF 322 (487)
Q Consensus 243 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 322 (487)
. +. ..+++|+.|+++++ +|+.+++++|...+.+| ++.+++|+.|++++|...+..+.
T Consensus 248 ~-~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~-- 304 (457)
T 3bz5_A 248 L-DV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC-- 304 (457)
T ss_dssp C-CC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC--
T ss_pred c-CH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc--
Confidence 2 21 22466777776654 34556677776655555 35577888888888775443332
Q ss_pred cCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcE
Q 036411 323 MNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEF 402 (487)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 402 (487)
..++|+.|++++ +++|++|++++|++++. .++.+++|+.|++++|++++ ++.|..
T Consensus 305 -~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~ 359 (457)
T 3bz5_A 305 -QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGK 359 (457)
T ss_dssp -TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGG
T ss_pred -CCCcceEechhh-------------cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccccc
Confidence 233444443333 35667777777776653 26667777777777776653 234444
Q ss_pred EeccCCccccccccccCCCcceEEEeeCcccCCcchH
Q 036411 403 IDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPI 439 (487)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 439 (487)
+++.+|.+... ..+..|+.+++++|++++.+|.
T Consensus 360 L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 360 IPALNNNFEAE----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCT
T ss_pred ccccCCcEEec----ceeeecCccccccCcEEEEcCh
Confidence 55555555422 2334455566666666654443
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=7.6e-30 Score=238.19 Aligned_cols=148 Identities=23% Similarity=0.348 Sum_probs=71.0
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+++|+.+++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. +.+..+++|+.|
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence 3455555555555543222 445555555555555554 3333 34555555555555554432 334445555555
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++++|.+.+. ..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 271 ~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 271 NVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 5555544422 233444555555555555544444444555555555555555443222 44444555555554443
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=4.1e-31 Score=257.70 Aligned_cols=299 Identities=17% Similarity=0.204 Sum_probs=137.1
Q ss_pred cceEEEeccCCCccccccccccCCCCCceeeccccccccc-ccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEE
Q 036411 131 KLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLI 209 (487)
Q Consensus 131 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 209 (487)
+++.|+++++ .+..+....+..+++|++|++++|.+... +..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus 33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEE
Confidence 4445555432 23333334444445555555555544222 334444555555555555444 33333334445555555
Q ss_pred cccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccC
Q 036411 210 LWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289 (487)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 289 (487)
+++|.+....+. .+..+++|+.|++++|.+....+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccccCChh-HccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 555544433222 224444555555555544422222222 234555555555554443333444455555555555554
Q ss_pred CCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhh
Q 036411 290 SGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHW 369 (487)
Q Consensus 290 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 369 (487)
. .++...|..+++|+.|++++|...+..+.......+|+.|++++|.+.......+..+++|+.|++++|++++..+..
T Consensus 189 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 189 N-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp C-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred c-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 4 333334444555555555554443333333333344555555555544333334444455555555555544444444
Q ss_pred hcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccC
Q 036411 370 IGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 370 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 434 (487)
+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.... .+..+++|+.|++.+|.+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4455555555555555544444444555555555555555433222 2234455555555555444
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.5e-30 Score=245.25 Aligned_cols=310 Identities=19% Similarity=0.181 Sum_probs=254.8
Q ss_pred CCCCCceeecccccccccccc-cccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCc
Q 036411 153 PTYPLKVLQLSHCHLNVNSSF-LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLR 231 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 231 (487)
..++++.+++.++.+..++.. +..+++|+.|+++++.+. .++...+..+++|++|++++|.+....+. .+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCC
Confidence 346788888888888666654 577899999999999886 45555566889999999999988766544 457889999
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (487)
.|++++|.+. .++..++..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++ +..+++|+.+++++
T Consensus 121 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCS
T ss_pred EEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccc
Confidence 9999999888 666665556789999999999998777777889999999999999987 554 35578999999999
Q ss_pred CccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcch
Q 036411 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 391 (487)
|.+... ...++|++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+
T Consensus 196 n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 NLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 977532 3446899999999998744 322 357899999999998754 578899999999999999987778
Q ss_pred hhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCce
Q 036411 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNL 471 (487)
Q Consensus 392 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 471 (487)
..+..+++|+.|++++|+++.....+..+++|++|++++|.+... +..+..+++|+.|++++|+++.. + +..+++|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 899999999999999999987777777899999999999999865 55677889999999999998644 2 7889999
Q ss_pred eEEeccCCccCC
Q 036411 472 HFLLLRGNSLQG 483 (487)
Q Consensus 472 ~~L~l~~~~~~~ 483 (487)
+.|++++|++.+
T Consensus 342 ~~L~l~~N~~~~ 353 (390)
T 3o6n_A 342 KNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEcCCCCccc
Confidence 999999998754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.2e-30 Score=242.56 Aligned_cols=308 Identities=19% Similarity=0.218 Sum_probs=146.3
Q ss_pred CCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEE
Q 036411 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLV 136 (487)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 136 (487)
++++.++++++.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 107 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----------------- 107 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-----------------
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-----------------
Confidence 445555555554443222334445555555555554443333344445555555554444321
Q ss_pred eccCCCccccccccccCCCCCceeeccccccccccc-ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCC
Q 036411 137 LSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSS-FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215 (487)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (487)
++...+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+ .+...+..+++|+.|++++|.+
T Consensus 108 ---------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 108 ---------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp ---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCC
T ss_pred ---------CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcC
Confidence 111112222233333333333322222 23456666666666666552 3222233445555555555444
Q ss_pred CCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCch
Q 036411 216 SGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR 295 (487)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 295 (487)
... ....+ ++|++|++++|.+.+ +...++|+.|++++|.+. .++.
T Consensus 178 ~~~----~~~~l-------------------------~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~ 222 (390)
T 3o6n_A 178 THV----DLSLI-------------------------PSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRG 222 (390)
T ss_dssp SBC----CGGGC-------------------------TTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC-EEEC
T ss_pred Ccc----ccccc-------------------------cccceeecccccccc-----cCCCCcceEEECCCCeee-eccc
Confidence 322 12333 444455554444331 122334555555555554 3333
Q ss_pred hhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccccc
Q 036411 296 SIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSV 375 (487)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (487)
.. .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .++..+..+++
T Consensus 223 ~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 296 (390)
T 3o6n_A 223 PV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296 (390)
T ss_dssp CC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTT
T ss_pred cc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCC
Confidence 21 34555555555555432 34445555555555555555444555555555555555555554 23333445555
Q ss_pred ccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC
Q 036411 376 LWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 376 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 435 (487)
|++|++++|.+. ..+..+..+++|+.|++++|+++.. .+..+++|++|++++|++..
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--CCCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCcccee--CchhhccCCEEEcCCCCccc
Confidence 666666666555 3444455556666666666665432 14455666666666666553
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-29 Score=251.68 Aligned_cols=310 Identities=19% Similarity=0.191 Sum_probs=255.2
Q ss_pred CCCCCceeeccccccccccc-ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCc
Q 036411 153 PTYPLKVLQLSHCHLNVNSS-FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLR 231 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 231 (487)
...+++.+++.++.+..++. .+..+++|+.|++++|.+. .++...+..+++|++|++++|.+....+. .+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCC
Confidence 34578888888888866655 4667889999999999887 45544566889999999999988765554 457889999
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (487)
.|++++|.+. .++..++..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++ +..+++|+.+++++
T Consensus 127 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCS
T ss_pred EEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhccc
Confidence 9999999888 666665556789999999999998777778889999999999999987 555 35578999999999
Q ss_pred CccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcch
Q 036411 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 391 (487)
|.+.+ +...++|+.|++++|.+....... .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred Ccccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 97754 234568999999999987443322 3689999999999975 4678899999999999999998888
Q ss_pred hhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCce
Q 036411 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNL 471 (487)
Q Consensus 392 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 471 (487)
..+..+++|+.|++++|.+...+..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++.. .+..+++|
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L 347 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL---KLSTHHTL 347 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCC
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc---ChhhcCCC
Confidence 89999999999999999998777777789999999999999985 466678899999999999998644 27788999
Q ss_pred eEEeccCCccCC
Q 036411 472 HFLLLRGNSLQG 483 (487)
Q Consensus 472 ~~L~l~~~~~~~ 483 (487)
+.|++++||+.+
T Consensus 348 ~~L~l~~N~~~~ 359 (597)
T 3oja_B 348 KNLTLSHNDWDC 359 (597)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEeeCCCCCC
Confidence 999999999764
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-32 Score=265.23 Aligned_cols=381 Identities=20% Similarity=0.144 Sum_probs=228.2
Q ss_pred CCCcEEECCCCccCCCcch-hccCCCCccEEeccCccccC----CccccccCCCCCcEEeccccccCcchhHHHhhcccc
Q 036411 57 KNLLELDLSSNNFEGHLPQ-CLNNLTHLKVLDISYNQLSG----NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSK 131 (487)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 131 (487)
++|++|+++++.+.+.... .+..+++|++|++++|.++. .++..+..+++|++|++++|.+...........++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5788888888887644333 36778888888888888763 345667778888888888887764333333333330
Q ss_pred ceEEEeccCCCccccccccccCCCCCceeeccccccc-----ccccccccCCcccEEeCCCCcccCCcchHhhh----cC
Q 036411 132 LEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN-----VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQ----NN 202 (487)
Q Consensus 132 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~ 202 (487)
..++|++|++++|.++ .++..+..+++|+.|++++|.+.+.....+.. ..
T Consensus 83 ---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 83 ---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 0113555555555543 23445566677777777777665333332222 23
Q ss_pred CCCcEEEcccCCCCCCCCC---CCCcCCCCCcEEEccCCcccccCCccccc----ccCceEEEEccCCCCCCC----cch
Q 036411 203 TGLEVLILWNNSFSGILPR---LPNAKYDKLRHLDISTNNFSGKLPENLGI----VFQKLIYLDVSKNSFEGN----IPY 271 (487)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~ 271 (487)
++|++|++++|.+...... ..+..+++|+.|++++|.+.+.....+.. ..++|++|++++|.+++. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 4577777766655432110 01234567777777777665433333322 234788888888877653 345
Q ss_pred hhhccccCcEEecccccCCCCC----chhhhcCCCCCcEEECCCCccCCC----CCcCCcCCCCccEEEcCCCccccccc
Q 036411 272 SISEMKELITLDLSRNNFSGEL----PRSIFSSCLSLETLDLSNNNFYGQ----LFPNFMNLTHLSSLRLNNNHFSGKMA 343 (487)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~ 343 (487)
.+..+++|+.|++++|.+.+.. ....+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.....
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 5666788888888887765221 123334567888888888876543 23445557778888888777754333
Q ss_pred cccc-----CCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcchhhhcc-----CcCCcEEeccCCc
Q 036411 344 DGLL-----SSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSIPVQLGN-----LESLEFIDISENG 409 (487)
Q Consensus 344 ~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~ 409 (487)
..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 3222 225777777777777644 3455566677777777777766444433332 5677777777777
Q ss_pred cc-----cccccccCCCcceEEEeeCcccCCcchHhhh-----ccCcceEEeCCCCccc
Q 036411 410 LS-----VSMVSLSNLSSVKHIYLHNNAINGLIPIALL-----RSSTLLTLDLRDNKFF 458 (487)
Q Consensus 410 ~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~ 458 (487)
++ ..+..+..+++|++|++++|+++......+. ...+|+.|.+.++...
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 65 3444455667777777777776643222221 1235666666666654
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.1e-31 Score=258.97 Aligned_cols=378 Identities=18% Similarity=0.108 Sum_probs=252.9
Q ss_pred CCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccc---cccccccCCCCCceeecccccccc--cccccccCC-
Q 036411 105 TSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ---VKTENWLPTYPLKVLQLSHCHLNV--NSSFLLHQH- 178 (487)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~- 178 (487)
++|++|+++++.+........+..+++|++++++++.-... .....+..+++|++|+++++.+.. .......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56889999999988766666789999999999988763221 112345566889999999888732 222223344
Q ss_pred ---cccEEeCCCCcccCCc---chHhhhcCCCCcEEEcccCCCCCCCCC----CCCcCCCCCcEEEccCCcccccCCccc
Q 036411 179 ---HLKFLDLSHNQLVGNF---PTWLLQNNTGLEVLILWNNSFSGILPR----LPNAKYDKLRHLDISTNNFSGKLPENL 248 (487)
Q Consensus 179 ---~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~ 248 (487)
+|++|++++|.+.+.. ....+..+++|++|++++|.+...... ......++|+.|++++|.+.+.....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 6999999999876422 133345788899999988876532111 011234578899998887775432222
Q ss_pred ---ccccCceEEEEccCCCCCCCcchhhh-----ccccCcEEecccccCCCCC---chhhhcCCCCCcEEECCCCccCCC
Q 036411 249 ---GIVFQKLIYLDVSKNSFEGNIPYSIS-----EMKELITLDLSRNNFSGEL---PRSIFSSCLSLETLDLSNNNFYGQ 317 (487)
Q Consensus 249 ---~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~ 317 (487)
...+++|++|++++|.+.+.....+. ..++|+.|++++|.+.+.. -...+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 22357888999988887643333332 2458889999888887321 122346678899999988876543
Q ss_pred CC----c-CCcCCCCccEEEcCCCccccc----ccccccCCCcccEEEccCCccCCCchhhhcc-----cccccEEecCC
Q 036411 318 LF----P-NFMNLTHLSSLRLNNNHFSGK----MADGLLSSTLLDVLDVSNNKLSGDIPHWIGN-----FSVLWLLLMSE 383 (487)
Q Consensus 318 ~~----~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~ 383 (487)
.. + .+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 21 1 123578889999988888753 3455666888899999988876544444433 26888999998
Q ss_pred ccccCc----chhhhccCcCCcEEeccCCccccc-ccccc-----CCCcceEEEeeCcccCC----cchHhhhccCcceE
Q 036411 384 NYLQGS----IPVQLGNLESLEFIDISENGLSVS-MVSLS-----NLSSVKHIYLHNNAING----LIPIALLRSSTLLT 449 (487)
Q Consensus 384 ~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~ 449 (487)
|.++.. .+..+..+++|+.|++++|.+... ...+. ..++|++|++++|.+++ ..+.++..+++|+.
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 887754 345566778899999988887532 22221 26788999998888875 55667777888999
Q ss_pred EeCCCCcccccCccccc-----ccCceeEEeccCCccC
Q 036411 450 LDLRDNKFFGRIPHQIN-----ELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 450 L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~ 482 (487)
|++++|++++.....+. ..++|+.|++.++.+.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 99998888644333222 2335777777776554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-28 Score=245.66 Aligned_cols=308 Identities=19% Similarity=0.177 Sum_probs=173.1
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEE
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 110 (487)
+++++.++++++.+.. .++..+.++++|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 5678888888887763 344557788888888888888876666678888888888888888887777777888888888
Q ss_pred eccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccc-cccccccCCcccEEeCCCCc
Q 036411 111 DLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNV-NSSFLLHQHHLKFLDLSHNQ 189 (487)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 189 (487)
++++|.+.. . +...+..+++|++|++++|.+.. .+..+..+++|+.|++++|.
T Consensus 129 ~L~~n~l~~-l-------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 129 VLERNDLSS-L-------------------------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp ECCSSCCCC-C-------------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EeeCCCCCC-C-------------------------CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 888876652 1 12223334444555555554422 22345556666666666666
Q ss_pred ccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCc
Q 036411 190 LVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 269 (487)
+.+. + ...++.|+.+++++|.+... ...++|+.|++++|.+. .++... +++|+.|++++|.+++.
T Consensus 183 l~~~-~---~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~- 247 (597)
T 3oja_B 183 LTHV-D---LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT- 247 (597)
T ss_dssp CSBC-C---GGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC-
T ss_pred CCCc-C---hhhhhhhhhhhcccCccccc------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC-
Confidence 5532 2 22455666666665544321 22345566666665554 222211 24566666666655532
Q ss_pred chhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCC
Q 036411 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS 349 (487)
Q Consensus 270 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 349 (487)
..+..+++|+.|++++|.+. .++...|..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+. ..+..+..+
T Consensus 248 -~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 248 -AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp -GGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -hhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 34455555555666555555 33333345555555555555555432 223334455555555555544 233333444
Q ss_pred CcccEEEccCCccCCCchhhhcccccccEEecCCcccc
Q 036411 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
++|+.|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 324 ~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 55555555555544221 334445555555555443
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=6.1e-30 Score=234.24 Aligned_cols=252 Identities=28% Similarity=0.452 Sum_probs=224.8
Q ss_pred CCCcEEEccCCcccc--cCCcccccccCceEEEEccC-CCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 228 DKLRHLDISTNNFSG--KLPENLGIVFQKLIYLDVSK-NSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
.+++.|+++++.+.+ .++..+.. +++|++|++++ +.+.+..+..+..+++|++|++++|.+.+.+|.. |..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence 468888888888876 56666554 68999999995 8888788888999999999999999998566654 5889999
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC-cccEEEccCCccCCCchhhhcccccccEEecCC
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST-LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 383 (487)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|++++..|..+..++ |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999999888888899999999999999999888888888887 999999999999888899999887 99999999
Q ss_pred ccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcc
Q 036411 384 NYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 463 (487)
|.+.+..+..+..+++|+.|++++|.+......+..+++|++|++++|.+++..|.++..+++|+.|++++|++++.+|.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988888899999999999999999987777788899999999999999988899999999999999999999988888
Q ss_pred cccccCceeEEeccCCc-cCC
Q 036411 464 QINELSNLHFLLLRGNS-LQG 483 (487)
Q Consensus 464 ~l~~l~~L~~L~l~~~~-~~~ 483 (487)
. ..+++|+.+++++|+ +.+
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 7 899999999999999 554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.9e-28 Score=226.76 Aligned_cols=289 Identities=21% Similarity=0.238 Sum_probs=188.8
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
+++.++++++.+. .++..+ .+.++.|+++++.+....+. .+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFA-PLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEE
Confidence 3444444444443 233221 24455555555554433322 234555666666666655533333332 24566666
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC--CCCcCCcCCCCccEEEcCCC
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG--QLFPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 336 (487)
++++|.++ ..+..+ .++|+.|++++|.+. .++...|..+++|+.|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 106 ~Ls~n~l~-~l~~~~--~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 106 YLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp ECCSSCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ECCCCcCC-ccChhh--cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 66666655 222222 256777777777766 5665556677777777777776642 34455666777777777777
Q ss_pred cccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc
Q 036411 337 HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 416 (487)
.+.. .+..+ .++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++...+..
T Consensus 182 ~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 258 (330)
T 1xku_A 182 NITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258 (330)
T ss_dssp CCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred cccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence 7663 33322 26788888888888766677888888888888888888766666788888888888888888877777
Q ss_pred ccCCCcceEEEeeCcccCCcchHhhhc------cCcceEEeCCCCccc--ccCcccccccCceeEEeccCCc
Q 036411 417 LSNLSSVKHIYLHNNAINGLIPIALLR------SSTLLTLDLRDNKFF--GRIPHQINELSNLHFLLLRGNS 480 (487)
Q Consensus 417 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 480 (487)
+..+++|++|++++|.+++..+..+.. ..+++.|++++|++. ...|..+..+++++.+++++|+
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 778888999999999888776666542 378899999999985 3566788899999999999885
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=228.09 Aligned_cols=288 Identities=21% Similarity=0.264 Sum_probs=217.7
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
+++.++++++.+. .+|..+ .+.++.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEE
Confidence 4666666666654 444432 25677777777766544333 346677788888888877744344433 45788888
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC--CCCcCCcCCCCccEEEcCCC
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG--QLFPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 336 (487)
++++|.+. ..+..+. ++|+.|++++|.+. .++...|..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 88888877 3333332 78888889888887 7777777888899999998888753 445566666 8899999998
Q ss_pred cccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc
Q 036411 337 HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 416 (487)
.+.+ .+..+ .++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++...+..
T Consensus 183 ~l~~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 183 KLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp BCSS-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCCc-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 8874 33333 26899999999999887778899999999999999999877777888999999999999999877777
Q ss_pred ccCCCcceEEEeeCcccCCcchHhhhc------cCcceEEeCCCCccc--ccCcccccccCceeEEeccCCc
Q 036411 417 LSNLSSVKHIYLHNNAINGLIPIALLR------SSTLLTLDLRDNKFF--GRIPHQINELSNLHFLLLRGNS 480 (487)
Q Consensus 417 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 480 (487)
+..+++|++|++++|.+++..+..+.. ..+|+.|++++|++. ...+..+..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 889999999999999999877666654 367999999999986 6777889999999999999986
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.5e-27 Score=219.30 Aligned_cols=289 Identities=22% Similarity=0.262 Sum_probs=229.3
Q ss_pred CCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEc
Q 036411 156 PLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 235 (487)
+++.++++++.+..++..+ .++++.|++++|.+. .++...+..+++|++|++++|.+....+. .+..+++|+.|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEEC
Confidence 5777888777776666544 367888999988887 45555566888999999998888765444 4577889999999
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCC-CCchhhhcCCCCCcEEECCCCcc
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG-ELPRSIFSSCLSLETLDLSNNNF 314 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 314 (487)
++|.+. .++..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ......|..+++|+.|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999887 5565543 689999999999987777778899999999999998852 14445578899999999999988
Q ss_pred CCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh
Q 036411 315 YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 394 (487)
.+. +..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. ..|..+
T Consensus 184 ~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred ccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 753 3333 288999999999998777788889999999999999998777778999999999999999988 677788
Q ss_pred ccCcCCcEEeccCCcccccccc-cc------CCCcceEEEeeCcccCC--cchHhhhccCcceEEeCCCCc
Q 036411 395 GNLESLEFIDISENGLSVSMVS-LS------NLSSVKHIYLHNNAING--LIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 395 ~~~~~L~~l~l~~~~~~~~~~~-~~------~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 456 (487)
..+++|+.|++++|+++..... +. ..+.++.+++.+|.+.. ..+.++..+.+++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8999999999999998644332 22 24789999999999864 567788889999999999884
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3.2e-28 Score=222.84 Aligned_cols=232 Identities=29% Similarity=0.419 Sum_probs=211.6
Q ss_pred CceEEEEccCCCCCC--CcchhhhccccCcEEeccc-ccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCcc
Q 036411 253 QKLIYLDVSKNSFEG--NIPYSISEMKELITLDLSR-NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 329 (487)
.++++|+++++.+.+ ..+..+..+++|+.|++++ |.+.+.+|.. |..+++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999987 7788999999999999995 8887677765 58899999999999999878888899999999
Q ss_pred EEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccc-cccEEecCCccccCcchhhhccCcCCcEEeccCC
Q 036411 330 SLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFS-VLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408 (487)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 408 (487)
+|++++|.+.+..+..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999988888999999999999999999888899999998 999999999999888888888887 999999999
Q ss_pred ccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 409 GLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 409 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
.+. ..+..+..+++|+.|++++|.++...+. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|+
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 986 4555677899999999999999876655 77789999999999999989999999999999999999999999985
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.3e-27 Score=219.59 Aligned_cols=288 Identities=21% Similarity=0.275 Sum_probs=223.6
Q ss_pred CCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEc
Q 036411 156 PLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 235 (487)
.++.++++++.+..++..+ .++++.|++++|.+. .++...+..+++|++|++++|.+....+. .+..+++|+.|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence 5777888877776666554 367888888888876 44444456788888888888877655443 4467888999999
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCC-CCchhhhcCCCCCcEEECCCCcc
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG-ELPRSIFSSCLSLETLDLSNNNF 314 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 314 (487)
++|.+. .++..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ......|..+ +|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888877 5565543 689999999999886666678889999999999998852 1344456666 899999999988
Q ss_pred CCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh
Q 036411 315 YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 394 (487)
.+. +..+. ++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+. ..|..+
T Consensus 185 ~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Ccc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 753 33332 78999999999998777778888999999999999998877778999999999999999988 677778
Q ss_pred ccCcCCcEEeccCCccccccc-cccC------CCcceEEEeeCcccC--CcchHhhhccCcceEEeCCCCc
Q 036411 395 GNLESLEFIDISENGLSVSMV-SLSN------LSSVKHIYLHNNAIN--GLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 395 ~~~~~L~~l~l~~~~~~~~~~-~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
..+++|+.|++++|+++.... .+.. .+.|+.|++.+|.+. ...+.++..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 899999999999999864432 2222 477999999999987 5677889999999999999885
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.6e-29 Score=249.19 Aligned_cols=322 Identities=11% Similarity=0.024 Sum_probs=221.4
Q ss_pred CCCCCceeeccccccc-----ccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCC--CCCCCCCc
Q 036411 153 PTYPLKVLQLSHCHLN-----VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG--ILPRLPNA 225 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 225 (487)
.+++|++|+++.+.++ .++..+..+++|+.|++++|.+.+ ++ ..+..+++|+.+.+....... ........
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 4456666666665553 333445678889999998887763 44 455678999999887532211 11112346
Q ss_pred CCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc-hhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 226 KYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP-YSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
.+++|+.+.+..+... .++. +...+++|++|++++|.+++... ..+..+++|+.|++. +.+.+......+..+++|
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred ccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 6788999998875322 3333 34456899999999998654322 346789999999998 444323344455778999
Q ss_pred cEEECCC----------C-ccCCCCCcC-CcCCCCccEEEcCCCcccccccccccC-CCcccEEEcc----CCccCCC--
Q 036411 305 ETLDLSN----------N-NFYGQLFPN-FMNLTHLSSLRLNNNHFSGKMADGLLS-STLLDVLDVS----NNKLSGD-- 365 (487)
Q Consensus 305 ~~L~l~~----------~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-- 365 (487)
++|++.+ | .+++..... ...+++|++|++..+.+++.....+.. +++|+.|+++ .+.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 9999994 3 343221122 345899999999888887666655554 8899999997 4566643
Q ss_pred ---chhhhcccccccEEecCCcc--ccCcchhhhc-cCcCCcEEeccCCcccc--ccccccCCCcceEEEeeCcccCCc-
Q 036411 366 ---IPHWIGNFSVLWLLLMSENY--LQGSIPVQLG-NLESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGL- 436 (487)
Q Consensus 366 ---~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~- 436 (487)
++..+..+++|++|+++.|. +++.....+. .+++|+.|++++|+++. ....+..+++|++|++++|.++..
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 45557789999999997654 5544444443 48999999999999853 233445789999999999998654
Q ss_pred chHhhhccCcceEEeCCCCcccccCcccc-cccCceeEEeccCC
Q 036411 437 IPIALLRSSTLLTLDLRDNKFFGRIPHQI-NELSNLHFLLLRGN 479 (487)
Q Consensus 437 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 479 (487)
.+.....+++|+.|++++|++++.....+ ..+|.+....+..+
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 33445678999999999999986655544 47888877766654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.3e-30 Score=257.13 Aligned_cols=422 Identities=14% Similarity=0.048 Sum_probs=286.5
Q ss_pred ccccccccEEecCCccccc---cc------------cccccCCCCCcEEEccCccccCCcccccccC-CCC-CcEEECCC
Q 036411 4 FGSLKQLKILNLGFNFFID---SI------------LPYLNTLTSLTTLNLRYNKIEGSRTKQGICN-LKN-LLELDLSS 66 (487)
Q Consensus 4 ~~~~~~L~~L~l~~~~~~~---~~------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~ 66 (487)
+..+++|+.|++++|.... .. ......+++|++|+++++.+++.. ...+.. +++ |++|++++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEES
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHH-HHHHHHhccccCcEEECcC
Confidence 5678889999997753211 11 112237899999999999775332 223433 444 99999998
Q ss_pred Ccc-CC-CcchhccCCCCccEEeccCccccCC----ccccccCCCCCcEEeccccccC---cchhHHHhhccccceEEEe
Q 036411 67 NNF-EG-HLPQCLNNLTHLKVLDISYNQLSGN----FPSVLTNLTSLEYLDLSFIDFQ---GTFLINSLANHSKLEVLVL 137 (487)
Q Consensus 67 ~~~-~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~l~l 137 (487)
|.. .. .++....++++|++|++++|.+++. ++..+..+++|++|+++++.+. .......+..+++|+.|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 863 21 1223345789999999999987654 4445567899999999988875 2344566788999999999
Q ss_pred ccCCCccccccccccCCCCCceeecccccc----cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccC
Q 036411 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHL----NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNN 213 (487)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 213 (487)
.++... .++ ..+..+++|+++++..... ......+..+++|+.++++++.. ......+..+++|++|++++|
T Consensus 228 ~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 228 GDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP--NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp SSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT--TTGGGGGGGGGGCCEEEETTC
T ss_pred cCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch--hHHHHHHhhcCCCcEEecCCC
Confidence 875432 222 4466778899999875332 22334566778999999887533 233344557899999999998
Q ss_pred CCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccC-----------CCCCCC-cchhhhccccCcE
Q 036411 214 SFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSK-----------NSFEGN-IPYSISEMKELIT 281 (487)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~~~~L~~ 281 (487)
.+...........+++|+.|++. +.+.+.....+...+++|++|++++ +.+++. .......+++|+.
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 75432211123678899999998 4444444444555678999999994 344422 2223456899999
Q ss_pred EecccccCCCCCchhhhcCCCCCcEEECC----CCccCCCC-----CcCCcCCCCccEEEcCCCc--ccccccccc-cCC
Q 036411 282 LDLSRNNFSGELPRSIFSSCLSLETLDLS----NNNFYGQL-----FPNFMNLTHLSSLRLNNNH--FSGKMADGL-LSS 349 (487)
Q Consensus 282 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~~-----~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~ 349 (487)
|++..+.+++.....+...+++|+.|++. .+.+++.. ...+..+++|++|++++|. ++......+ ..+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 99988888755544544458999999996 34454421 1224568999999997654 444433333 347
Q ss_pred CcccEEEccCCccCC-CchhhhcccccccEEecCCccccCc-chhhhccCcCCcEEeccCCccccc-cccc-cCCCcceE
Q 036411 350 TLLDVLDVSNNKLSG-DIPHWIGNFSVLWLLLMSENYLQGS-IPVQLGNLESLEFIDISENGLSVS-MVSL-SNLSSVKH 425 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~-~~~~-~~~~~L~~ 425 (487)
++|+.|++++|++++ ..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|+++.. ...+ ..+|.++.
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence 899999999999875 3455668899999999999997644 334456789999999999997532 2222 26788877
Q ss_pred EEeeCc
Q 036411 426 IYLHNN 431 (487)
Q Consensus 426 L~l~~~ 431 (487)
..+..+
T Consensus 543 ~~~~~~ 548 (592)
T 3ogk_B 543 ELIPSR 548 (592)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 766654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=221.57 Aligned_cols=257 Identities=22% Similarity=0.227 Sum_probs=191.9
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
++++.|+++++.+.+ ++......+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|.++++|++|
T Consensus 52 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence 467777777777663 33323334577888888888777655666778888888888888887 6777767888888888
Q ss_pred ECCCCccCCCCC-cCCcCCCCccEEEcCCC-cccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcc
Q 036411 308 DLSNNNFYGQLF-PNFMNLTHLSSLRLNNN-HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 308 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (487)
++++|.+.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 888888775444 46777888888888887 4555556677788888888888888877778888888888888888888
Q ss_pred ccCcchhhhccCcCCcEEeccCCccccccc----cccCCCcceEEEeeCcccCC----cchHhhhccCcceEEeCCCCcc
Q 036411 386 LQGSIPVQLGNLESLEFIDISENGLSVSMV----SLSNLSSVKHIYLHNNAING----LIPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 386 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 457 (487)
+.......+..+++|+.|++++|.+..... .....+.++.++++++.+.+ ..+.++..+++|+.|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 764333345567888888888888753221 12245678888888887765 2466778889999999999999
Q ss_pred cccCcccccccCceeEEeccCCccCCCCC
Q 036411 458 FGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 458 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
+...+..++.+++|++|++++|++.+..|
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 74444456899999999999999988754
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=2.4e-29 Score=252.58 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=59.5
Q ss_pred ccCCCcccEEEccCCccCCCchhhhcc-cccccEEecCCccccCcchhhh-ccCcCCcEEeccCCccccc--cccccCCC
Q 036411 346 LLSSTLLDVLDVSNNKLSGDIPHWIGN-FSVLWLLLMSENYLQGSIPVQL-GNLESLEFIDISENGLSVS--MVSLSNLS 421 (487)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~--~~~~~~~~ 421 (487)
+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.....+ ..+++|+.|++++|+++.. ......++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34556666666655 444333344433 6667777777666654333333 4566777777777766321 11223466
Q ss_pred cceEEEeeCcccCCcchHhh-hccCcceEEeCCCC
Q 036411 422 SVKHIYLHNNAINGLIPIAL-LRSSTLLTLDLRDN 455 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 455 (487)
+|++|++++|+++......+ ..+++|+...+..+
T Consensus 507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 77777777776643333333 44566665555544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-26 Score=212.61 Aligned_cols=246 Identities=21% Similarity=0.227 Sum_probs=131.8
Q ss_pred cEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCC--cchhhhccccCcEEe
Q 036411 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN--IPYSISEMKELITLD 283 (487)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 283 (487)
+.+++.++.+...+. ...++++.|+++++.+. .++...+..+++|++|++++|.+... .+..+..+++|+.|+
T Consensus 10 ~~l~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT----GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCC----CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 345555554443322 12245666666666665 44444444456666666666665422 134444556666666
Q ss_pred cccccCCCCCchhhhcCCCCCcEEECCCCccCCCCC-cCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCcc
Q 036411 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLF-PNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKL 362 (487)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 362 (487)
+++|.+. .++.. +..+++|++|++++|.+.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 6666655 44443 4556666666666666554332 3455556666666666665544555555556666666666655
Q ss_pred CC-CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCCcchHh
Q 036411 363 SG-DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIA 440 (487)
Q Consensus 363 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 440 (487)
.+ ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++.... .+..+++|++|++++|.+++..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 43 345555555556666666555554444555555555555555555543222 3344555555555555555544444
Q ss_pred hhcc-CcceEEeCCCCccc
Q 036411 441 LLRS-STLLTLDLRDNKFF 458 (487)
Q Consensus 441 ~~~~-~~L~~L~l~~~~~~ 458 (487)
+..+ ++|+.|++++|+++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 4444 25555555555553
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.2e-26 Score=218.88 Aligned_cols=227 Identities=23% Similarity=0.226 Sum_probs=123.4
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
++++.|++++|.+....+..+..+++|+.|++++|.+. .++...|.++++|++|++++|.+.+.....+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 44555555555555444444555555555555555554 44444455555555555555555544444455555555555
Q ss_pred cCCCcccccccccccCCCcccEEEccCCcc-CCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKL-SGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+++|.+.......+..+++|+.|++++|.. ....+..+..+++|++|++++|.+. ..| .+..+++|+.|++++|+++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 555555544444555555555555555332 2222234555555666666655554 222 2445556666666666554
Q ss_pred cc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 412 VS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 412 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
.. +..+..+++|++|++++|.++...+.++..+++|+.|+|++|+++...+..+..+++|+.|++++||+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 33 344445566666666666666555555556666666666666665555555566666666666666543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.7e-26 Score=218.44 Aligned_cols=227 Identities=23% Similarity=0.216 Sum_probs=112.7
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
+++++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 34455555555544433444445555555555555544 34433444555555555555554444444444455555555
Q ss_pred cCCCcccccccccccCCCcccEEEccCCc-cCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNK-LSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+++|.+.......+..+++|+.|++++|. +....+..+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 55555544444444455555555555532 221222234455555555555555542 22 2444555555555555553
Q ss_pred cc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 412 VS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 412 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
.. +..+..+++|+.|++++|.++...+.++..+++|+.|+|++|+++...+..+..+++|+.|++++||+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 32 333445555555555555555555555555555555555555555444445555555555555555543
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=9.3e-29 Score=248.24 Aligned_cols=425 Identities=14% Similarity=0.067 Sum_probs=289.3
Q ss_pred cccccccccEEecCCccccccc---------------cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSI---------------LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 67 (487)
.+.++++|+.|+++++...... ......+++|++|+++++.+++.........+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3578899999999987532111 1223578999999999998764333222236899999999999
Q ss_pred -ccCCC-cchhccCCCCccEEeccCccccCCccc----cccCCCCCcEEeccccc--cCcchhHHHhhccccceEEEecc
Q 036411 68 -NFEGH-LPQCLNNLTHLKVLDISYNQLSGNFPS----VLTNLTSLEYLDLSFID--FQGTFLINSLANHSKLEVLVLSS 139 (487)
Q Consensus 68 -~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~ 139 (487)
.+.+. ++....++++|++|++++|.++...+. ....+++|++|+++++. +...........+++|+.|++.+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44432 344456899999999999987654433 33477899999999886 44344445557789999999988
Q ss_pred CCCccccccccccCCCCCceeeccccc-------ccccccccccCCcccEE-eCCCCcccCCcchHhhhcCCCCcEEEcc
Q 036411 140 GNDMLQVKTENWLPTYPLKVLQLSHCH-------LNVNSSFLLHQHHLKFL-DLSHNQLVGNFPTWLLQNNTGLEVLILW 211 (487)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 211 (487)
+..... ....+..+++|+++++..+. +..++..+.++++|+.+ .+..... .....+...+++|++|+++
T Consensus 221 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~--~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 221 AVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP--AYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp TSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG--GGGGGGHHHHTTCCEEECT
T ss_pred CCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch--hhHHHHHHhhCCCCEEEcc
Confidence 865555 33345667889999876553 23344466788999998 4443322 2222333467999999999
Q ss_pred cCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccC---------CCCCCCcchhh-hccccCcE
Q 036411 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSK---------NSFEGNIPYSI-SEMKELIT 281 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~ 281 (487)
+|.+...........+++|+.|++.+| +.+.....+...+++|++|++.+ +.+++.....+ ..+++|+.
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 988543221112347789999999988 44333344444578999999944 23332222222 35899999
Q ss_pred EecccccCCCCCchhhhcCCCCCcEEECC--C----CccCCCCCc-----CCcCCCCccEEEcCCCcccccccccccC-C
Q 036411 282 LDLSRNNFSGELPRSIFSSCLSLETLDLS--N----NNFYGQLFP-----NFMNLTHLSSLRLNNNHFSGKMADGLLS-S 349 (487)
Q Consensus 282 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~ 349 (487)
|.+..+.+++.....+...+++|+.|++. + +.+++.... .+..+++|++|++++ .++......+.. +
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 98888888744444444568999999998 3 334321111 145688999999987 555444444444 7
Q ss_pred CcccEEEccCCccCCCchhhh-cccccccEEecCCccccCcchh-hhccCcCCcEEeccCCccccc-cccc-cCCCcceE
Q 036411 350 TLLDVLDVSNNKLSGDIPHWI-GNFSVLWLLLMSENYLQGSIPV-QLGNLESLEFIDISENGLSVS-MVSL-SNLSSVKH 425 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~-~~~~~L~~ 425 (487)
++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|+.|++++|+++.. ...+ ..+|+|+.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 899999999999876555555 6799999999999998644443 345689999999999998421 1222 35788877
Q ss_pred EEeeCcc
Q 036411 426 IYLHNNA 432 (487)
Q Consensus 426 L~l~~~~ 432 (487)
..+.++.
T Consensus 536 ~~~~~~~ 542 (594)
T 2p1m_B 536 EVIDERG 542 (594)
T ss_dssp EEECSSS
T ss_pred EEecCCC
Confidence 7766554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-25 Score=203.55 Aligned_cols=250 Identities=18% Similarity=0.168 Sum_probs=188.8
Q ss_pred cEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
+.++.++..+. .+|..+ ++++++|+++++.+.+..+..+..+++|+.|++++|.+. .++...|..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 56777777666 455543 468899999998887666667888888999999988887 5655567888889999998
Q ss_pred CCc-cCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCc
Q 036411 311 NNN-FYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS 389 (487)
Q Consensus 311 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 389 (487)
+|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..++.+++|++|++++|.++..
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 887 6666567788888899999988888866677778888888888888888876677788888888888888888755
Q ss_pred chhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccccc
Q 036411 390 IPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINEL 468 (487)
Q Consensus 390 ~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 468 (487)
.+..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.-+ ...-.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~ 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLW 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHH
Confidence 555678888888888888888644 5566678888888888888888777778888888888888888753222 11222
Q ss_pred CceeEEeccCCccCCCCC
Q 036411 469 SNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 469 ~~L~~L~l~~~~~~~~~p 486 (487)
..++.+..+.+.+.+..|
T Consensus 248 ~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHHCCSEECCCBEEES
T ss_pred HHHHhcccccCccccCCc
Confidence 334444555565555554
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2e-26 Score=210.92 Aligned_cols=281 Identities=23% Similarity=0.221 Sum_probs=206.5
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccC--CcccccccCceEEE
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKL--PENLGIVFQKLIYL 258 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L 258 (487)
+.++.+++.++ .+|..+ .+++++|+++++.+...... .+..+++|+.|++++|.+.... +..+. .+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccc-cccccCEE
Confidence 56777777766 555533 36888999988887754433 4577888999999888776321 22222 35789999
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCch-hhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCc
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR-SIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (487)
++++|.+. ..+..+..+++|+.|++++|.+. .++. ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp ECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred ECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 99998887 45556778889999999998887 4543 557888899999999988877777778888899999999988
Q ss_pred ccc-cccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc-cc
Q 036411 338 FSG-KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS-MV 415 (487)
Q Consensus 338 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~ 415 (487)
+.+ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++... +.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 875 4677788888999999999988877788888889999999999988866666788888999999999988543 34
Q ss_pred cccCC-CcceEEEeeCcccCCcch-Hh-hhccCcceEEeCCCCcccccCcccccccC
Q 036411 416 SLSNL-SSVKHIYLHNNAINGLIP-IA-LLRSSTLLTLDLRDNKFFGRIPHQINELS 469 (487)
Q Consensus 416 ~~~~~-~~L~~L~l~~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 469 (487)
.+..+ ++|++|++++|.+..... .+ ..-+...+.+....+.+.+..|..+++.+
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 45566 489999999988875422 11 11123344455566667677777766554
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.1e-26 Score=204.91 Aligned_cols=268 Identities=18% Similarity=0.115 Sum_probs=217.0
Q ss_pred cEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecc
Q 036411 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLS 285 (487)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (487)
+.+++.+..+..... ...++++.|+++++.+.+ ++...+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 14 ~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 567777776665432 335789999999999884 443333456899999999999987667788999999999999
Q ss_pred ccc-CCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCC
Q 036411 286 RNN-FSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG 364 (487)
Q Consensus 286 ~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 364 (487)
+|. +. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|++|++++|++++
T Consensus 89 ~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 997 65 7766678899999999999999988777888899999999999999987777778889999999999999986
Q ss_pred CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCCcchHhhhc
Q 036411 365 DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLR 443 (487)
Q Consensus 365 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 443 (487)
..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..... .+..+++|++|++++|.+....+.. ..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~ 246 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HH
Confidence 666679999999999999999987778899999999999999999975554 4678999999999999988543321 11
Q ss_pred cCcceEEeCCCCcccccCcccccc--cCceeEEeccCCc
Q 036411 444 SSTLLTLDLRDNKFFGRIPHQINE--LSNLHFLLLRGNS 480 (487)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~ 480 (487)
...++.+..+.+.+.+..|+.+.. +..++..++.+|+
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 234556667778888888887754 5677777777774
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=208.97 Aligned_cols=273 Identities=18% Similarity=0.152 Sum_probs=187.8
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEc
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 260 (487)
...+.+++.++ .+|..+. ++|++|+++++.+...... .+..+++|+.|++++|.+.+..+..+ ..+++|++|++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L 107 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDL 107 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEC
T ss_pred eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhc-CCCCCCCEEEC
Confidence 33455555554 4444322 4666666666666544332 34667777777777777764333333 33577888888
Q ss_pred cCCCCCCCcchhhhccccCcEEecccccCCCCCch-hhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCCCcc
Q 036411 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR-SIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNNNHF 338 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~ 338 (487)
++|.+++..+..+..+++|+.|++++|.+. .++. ..|..+++|++|++++|. +.+..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 888877555555777888888888888877 6666 567778888888888874 5555556677788888888888888
Q ss_pred cccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh---ccCcCCcEEeccCCccc----
Q 036411 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL---GNLESLEFIDISENGLS---- 411 (487)
Q Consensus 339 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~---- 411 (487)
.+..+..+..+++|++|++++|++.......+..+++|++|++++|.+.+..+..+ ...+.++.++++++.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 76667777888888888888888764444445567888888888888775433332 23566777777777653
Q ss_pred -cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 412 -VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 412 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++.+.
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2344566788888888888888876555567888888888888887644
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.2e-25 Score=205.16 Aligned_cols=233 Identities=18% Similarity=0.225 Sum_probs=157.6
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
++++.|+++++.+. .++..++. +++|++|++++|.+. .++..+..+++|+.|++++|.+. .+|.. +..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence 44555566555555 44444443 455555555555555 44445555555555555555555 45443 3455555555
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcccc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
++++|...+..+..+.. . .....+..+++|+.|++++|+++ .+|..++.+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 55555444333332221 0 01112345778888888888877 66777888888888888888887
Q ss_pred CcchhhhccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccc
Q 036411 388 GSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466 (487)
Q Consensus 388 ~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (487)
..+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|++.+.+|..+.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 45556788888888888887764 3445566888899999999888888888888899999999999998889999999
Q ss_pred ccCceeEEeccCCccC
Q 036411 467 ELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 467 ~l~~L~~L~l~~~~~~ 482 (487)
++++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 9999999988876543
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.4e-25 Score=206.46 Aligned_cols=206 Identities=19% Similarity=0.252 Sum_probs=153.4
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
++++.|+++++.+. .+|..+ ..+++|++|++++|.+. .++..+..+++|++|++++|.+. ..+..+..+++|+.|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 34445555554444 444433 22445555555555444 33344444555555555555554 3344455555555555
Q ss_pred ccCCccCCCchhh---------hcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEE
Q 036411 357 VSNNKLSGDIPHW---------IGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIY 427 (487)
Q Consensus 357 l~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~ 427 (487)
+++|...+.+|.. +..+++|++|++++|.++ ..|..+..+++|+.|++++|++...+..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 5555544444444 445999999999999998 788889999999999999999988888888999999999
Q ss_pred eeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 428 LHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 428 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
+++|++.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 999999999999999999999999999999999999999999999999999999999995
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=5.4e-24 Score=204.79 Aligned_cols=246 Identities=23% Similarity=0.211 Sum_probs=114.6
Q ss_pred ccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEE
Q 036411 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLD 259 (487)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 259 (487)
...++..+..+. .+|..+ .+.++.|++++|.+....+. .+..+++|+.|++++|.+.. ++...+..+++|++|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEE
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEE
Confidence 344555555444 444322 14455555555554433322 23445555555555555442 2222222334555555
Q ss_pred ccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCCCcc
Q 036411 260 VSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNNNHF 338 (487)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~ 338 (487)
+++|.++...+..+..+++|+.|++++|.+. .++...|..+++|+.|++++|. +.......+..+++|+.|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 5555554333334455555555555555554 4444444555555555555532 2222222344455555555555554
Q ss_pred cccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-c
Q 036411 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-L 417 (487)
Q Consensus 339 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~ 417 (487)
.. .+ .+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|+.|++++|+++..... +
T Consensus 198 ~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 198 RE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp SS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 42 11 234444555555555555444444455555555555555555444444444455555555555544322222 2
Q ss_pred cCCCcceEEEeeCcccC
Q 036411 418 SNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 418 ~~~~~L~~L~l~~~~~~ 434 (487)
..+++|+.|++++|.+.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 34445555555554443
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=5.7e-24 Score=205.38 Aligned_cols=245 Identities=20% Similarity=0.136 Sum_probs=115.0
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEc
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 260 (487)
..++.++..+. .+|..+ .++++.|++++|.+....+. .+..+++|+.|++++|.+.+..+.. +..+++|++|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L 130 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLEL 130 (452)
T ss_dssp CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEEC
T ss_pred cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEEC
Confidence 44555555444 344322 14555555555555433322 2344555555555555554222222 222345555555
Q ss_pred cCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCCCccc
Q 036411 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
++|.++...+..+..+++|+.|++++|.+. .++...|..+++|+.|++++|. +.......+..+++|+.|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 555554333344445555555555555554 4444445555555555555532 22222223444555555555555544
Q ss_pred ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-ccc
Q 036411 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLS 418 (487)
Q Consensus 340 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~ 418 (487)
+. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|+.|++++|+++.... .+.
T Consensus 210 ~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 22 123444455555555555544444455555555555555555544444444455555555555555432222 223
Q ss_pred CCCcceEEEeeCcccC
Q 036411 419 NLSSVKHIYLHNNAIN 434 (487)
Q Consensus 419 ~~~~L~~L~l~~~~~~ 434 (487)
.+++|+.|++.+|.+.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 4455555555555443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.6e-25 Score=201.43 Aligned_cols=218 Identities=22% Similarity=0.197 Sum_probs=131.5
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccE
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (487)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+. |..+++|++|++++|.+.+.. ..++|+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 3456666666666666555556666666666666666665 2332 456666666666666654321 2366666
Q ss_pred EEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh-ccCcCCcEEeccCCc
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL-GNLESLEFIDISENG 409 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~ 409 (487)
|++++|.+.+..... +++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 104 L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 666666665433322 4556666666666665555566666666666666666665444444 356666666666666
Q ss_pred cccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 410 LSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 410 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
++.. .....+++|++|++++|.+++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 181 l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 181 IYDV-KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEE-ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred Cccc-ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 6543 222346666666666666665433 3556666666666666665 34555666666666666666665
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=3.9e-26 Score=209.13 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=174.1
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCC-Ccchhhh-------ccccCcEEecccccCCCCCchhhh-
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG-NIPYSIS-------EMKELITLDLSRNNFSGELPRSIF- 298 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~- 298 (487)
++|+.+++.++.+ .+|..+. ..++.|+++++.+.. ..+.... .+++|+.|++++|.+.+.+|..+|
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4455555665555 3444333 236666666666532 2222222 577788888888887766666544
Q ss_pred cCCCCCcEEECCCCccCCCCCcCCcCC-----CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCC--chhhh-
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPNFMNL-----THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGD--IPHWI- 370 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~- 370 (487)
..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6777888888888877665 4545444 7888888888888766667777888888888888876543 23333
Q ss_pred -cccccccEEecCCccccCc---chhhhccCcCCcEEeccCCcccccc--ccccCCCcceEEEeeCcccCCcchHhhhcc
Q 036411 371 -GNFSVLWLLLMSENYLQGS---IPVQLGNLESLEFIDISENGLSVSM--VSLSNLSSVKHIYLHNNAINGLIPIALLRS 444 (487)
Q Consensus 371 -~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 444 (487)
..+++|++|++++|.+... ....+..+++|+.|++++|.+.... ..+..+++|++|++++|.++.. |..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 7788888888888887731 1233457789999999999886544 4455678999999999999854 54444
Q ss_pred CcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 445 STLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999765 65 8999999999999999885
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.6e-23 Score=207.11 Aligned_cols=265 Identities=23% Similarity=0.242 Sum_probs=134.3
Q ss_pred CCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEc
Q 036411 156 PLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 235 (487)
.++.++++++.++.++..+. ++|+.|++++|.++ .++. .+++|++|++++|.+..... .+++|+.|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEEC
Confidence 35666666666655555433 56666666666655 3433 34566666666665543221 3455666666
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccC
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY 315 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (487)
++|.+. .++. .+++|+.|++++|.++. ++. .+++|+.|++++|.+. .++. .+.+|+.|++++|.+.
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence 666554 2232 23556666666665553 221 1355666666666555 3432 2345566666665554
Q ss_pred CCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhc
Q 036411 316 GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG 395 (487)
Q Consensus 316 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 395 (487)
... ..+++|+.|++++|.+.+ .+. ..++|+.|++++|.++. +|. .+++|++|++++|.+++ .| .
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C
Confidence 322 234555666666555542 111 12455555555555542 221 23455555555555542 22 2
Q ss_pred cCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccc
Q 036411 396 NLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466 (487)
Q Consensus 396 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (487)
.+++|+.|++++|.++..+. .+++|+.|++++|.++. +|..+..+++|+.|++++|++++..+..+.
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 33455555555555543322 34555555555555553 244455555555555555555544444443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.3e-25 Score=204.46 Aligned_cols=261 Identities=21% Similarity=0.146 Sum_probs=163.7
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
.++..+++.+.+. ..+..++..+++|++|++++|.+....+. .+..+++|+.|++++|.+.+..+ ...+++|++|
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD---LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEE
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEE
Confidence 4555666666654 44455566677888888888877654332 34567778888888877763322 3345677777
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcc
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 338 (487)
++++|.+++. ...++|+.|++++|.+. .++.. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 86 ~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQEL-----LVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEE-----EECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCccccc-----cCCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 7777776522 23467777777777776 44432 356677777777777665555666667777777777776
Q ss_pred cccccccc-cCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc
Q 036411 339 SGKMADGL-LSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL 417 (487)
Q Consensus 339 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 417 (487)
.+..+..+ ..+++|+.|++++|.+++. + ....+++|++|++++|.+.+ .+..+..+++|+.|++++|+++..+..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHh
Confidence 65544444 2556777777777766533 2 22236667777777766663 3334666666777777776666555555
Q ss_pred cCCCcceEEEeeCcccC-CcchHhhhccCcceEEeCCCCc
Q 036411 418 SNLSSVKHIYLHNNAIN-GLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 418 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
..+++|+.|++++|.+. +..+.++..+++|+.++++++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 56666666666666666 4455566666666666666443
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.3e-23 Score=186.45 Aligned_cols=207 Identities=22% Similarity=0.209 Sum_probs=158.9
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
+++++|++++|.+++..+..+..+++|+.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 56788888888777555556777888888888888877 66666677788888888888887766667777888888888
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCC-chhhhcccccccEEecCCccccCcchhhhccCcCCc----EEeccC
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGD-IPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLE----FIDISE 407 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~l~l~~ 407 (487)
+.+|.+.+.....+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++|+ .+++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 888887766565677788888888888888753 577888888888888888888766566666666666 788888
Q ss_pred CccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 408 NGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 408 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
|++...........+|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 88876655555556788888888888877666677788888888888887643
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.9e-24 Score=204.94 Aligned_cols=235 Identities=24% Similarity=0.226 Sum_probs=110.3
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..+ +..+++|+.|++++|.+. .++. .++|+.|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence 345555555555542222222 233455555555555543222 444555555555555544 2221 2455555
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhc-ccccccEEecCCccc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG-NFSVLWLLLMSENYL 386 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 386 (487)
++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 5555554433221 234455555555555544444444455555555555555444444443 445555555555554
Q ss_pred cCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc-ccCcccc
Q 036411 387 QGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF-GRIPHQI 465 (487)
Q Consensus 387 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l 465 (487)
++. + ....+++|+.|++++|.++..++.+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 422 1 1123455555555555554444444445555555555555543 2333444455555555555543 3344444
Q ss_pred cccCceeEEecc
Q 036411 466 NELSNLHFLLLR 477 (487)
Q Consensus 466 ~~l~~L~~L~l~ 477 (487)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 455555544443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.7e-23 Score=183.53 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=137.7
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
...+.++++++.++ .++..+ .++++.|++++|.+. .++...|..+++|++|++++|.+.+.....+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 35667777777776 334333 256777888877776 66665667777788888877777655555566777777777
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 412 (487)
+++|.+.......+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 77777765555566677777777777777776666667777777777777777765545556667777777777776654
Q ss_pred ccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 413 SMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 413 ~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
... .+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 433 3456677777777777776665556666677777777777664
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.4e-23 Score=186.39 Aligned_cols=208 Identities=25% Similarity=0.257 Sum_probs=181.2
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
++++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 57999999999998 77776788999999999999999877777889999999999999999877778899999999999
Q ss_pred ccCCccCCCchhhhcccccccEEecCCccccCc-chhhhccCcCCcEEeccCCcccccc-ccccCCCcce----EEEeeC
Q 036411 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS-IPVQLGNLESLEFIDISENGLSVSM-VSLSNLSSVK----HIYLHN 430 (487)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~----~L~l~~ 430 (487)
+++|.+.+..+..++.+++|++|++++|.+... .|..+..+++|+.|++++|++.... ..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999877777799999999999999999863 5888999999999999999986443 3455555565 899999
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
|.++...+..+.. .+|+.|++++|.++...+..+..+++|+.|++++||+.+..|
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999776655543 589999999999987777788999999999999999998765
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.4e-22 Score=200.38 Aligned_cols=266 Identities=26% Similarity=0.232 Sum_probs=159.2
Q ss_pred cceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEc
Q 036411 131 KLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210 (487)
Q Consensus 131 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 210 (487)
+++.++++++. +..++.... ++|+.|++++|.++.++. .+++|+.|++++|.++ .++. .+++|++|++
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCC-cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 46666665433 333333221 467777777776655554 3566777777777665 3443 4567777777
Q ss_pred ccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCC
Q 036411 211 WNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
++|.+..... .+++|+.|++++|.+. .++.. +++|++|++++|.+++. +. .+++|+.|++++|.+.
T Consensus 109 s~N~l~~l~~-----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLTHLPA-----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCCCCCC-----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred cCCcCCCCCC-----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence 7766654322 3466777777777665 33332 35677777777766532 21 3456677777777766
Q ss_pred CCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhh
Q 036411 291 GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWI 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 370 (487)
.++ ..+++|+.|++++|.+.+.. . .+++|+.|++.+|.+.. .+. .+++|+.|++++|++++ +|
T Consensus 175 -~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp--- 237 (622)
T 3g06_A 175 -SLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP--- 237 (622)
T ss_dssp -CCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---
T ss_pred -CCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---
Confidence 555 23566777777777665422 1 23567777777776652 222 23567777777776653 33
Q ss_pred cccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhc
Q 036411 371 GNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLR 443 (487)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 443 (487)
..+++|++|++++|.++ ..|. .+++|+.|++++|.++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 238 ~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 238 VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 44566777777777666 3333 446677777777777656666666777777777777776655555443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.2e-24 Score=208.07 Aligned_cols=215 Identities=22% Similarity=0.196 Sum_probs=95.2
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+. |..+++|++|++++|.+.+.. ..++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 44455555544444334444444445555554444442 111 344444555555444443211 1144445555
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhc-cCcCCcEEeccCCcccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG-NLESLEFIDISENGLSV 412 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~ 412 (487)
++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..+..+. .+++|+.|++++|.++.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 54444432222 124444555555544444444444444555555555444443343332 34445555555544432
Q ss_pred ccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 413 SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
. .....+++|+.|++++|.+++.++. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 184 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 V-KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 2 2222344455555555444433222 4444445555555544432 3334444445555555554443
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.2e-24 Score=197.44 Aligned_cols=202 Identities=18% Similarity=0.181 Sum_probs=139.1
Q ss_pred cCceEEEEccCCCCCCCcchhh--hccccCcEEecccccCCCCCchhhhcCC-----CCCcEEECCCCccCCCCCcCCcC
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSI--SEMKELITLDLSRNNFSGELPRSIFSSC-----LSLETLDLSNNNFYGQLFPNFMN 324 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~ 324 (487)
+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+. ..|. .+..+ ++|++|++++|.+.+..+..+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3566666666666655444443 56666777777776666 3332 23333 67777777777776666666777
Q ss_pred CCCccEEEcCCCccccc--cccc--ccCCCcccEEEccCCccCCC---chhhhcccccccEEecCCccccCcch-hhhcc
Q 036411 325 LTHLSSLRLNNNHFSGK--MADG--LLSSTLLDVLDVSNNKLSGD---IPHWIGNFSVLWLLLMSENYLQGSIP-VQLGN 396 (487)
Q Consensus 325 ~~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 396 (487)
+++|++|++++|.+.+. .+.. +..+++|++|++++|++++. ....+..+++|++|++++|.+.+..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 77777777777775432 1222 26677888888888887631 12344567888888888888876553 34556
Q ss_pred CcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 397 LESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 397 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
+++|+.|++++|.++..+..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7889999999998875555554 8899999999999876 44 7788999999999998864
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=8.1e-22 Score=176.51 Aligned_cols=203 Identities=22% Similarity=0.265 Sum_probs=171.8
Q ss_pred CCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
..+.++++++.++ .+|..+ ++++++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 5778999988887 566654 368999999999988766667888999999999999988 88888888899999999
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccC
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG 388 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 388 (487)
+++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999887776778889999999999999987777778889999999999999887777778899999999999999887
Q ss_pred cchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEeeCcccCCc
Q 036411 389 SIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 389 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 436 (487)
..+..|..+++|+.|++++|+++..... +..+++|+.|++++|.+...
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6667788899999999999988755543 56789999999999987643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.3e-22 Score=181.76 Aligned_cols=207 Identities=19% Similarity=0.180 Sum_probs=133.6
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+++|+.|+++++.+... ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45677777777766532 24566777777777777766 343 35667777777777777665555556667777777
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 77777776555555666677777777777766555556666777777777777666555555666677777777777665
Q ss_pred ccccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCc
Q 036411 412 VSMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470 (487)
Q Consensus 412 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 470 (487)
..... +..+++|+.|++++|.+... +++|+.++++.|.+++.+|..++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 43333 44666777777776665532 345666666666666666666665554
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.1e-21 Score=177.11 Aligned_cols=199 Identities=21% Similarity=0.234 Sum_probs=124.8
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
++++++++++++.++ .++..+ .++++.|++++|.+. .++...|..+++|+.|++++|.+.+... ...+++|+.|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 456777777777766 333333 256777777777776 5555556677777777777777654322 2556677777
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++++|.+. ..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+....+..|..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 77777665 44455566667777777777766555566666777777777777666555555666666677777666665
Q ss_pred ccccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 412 VSMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 412 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
..+.. +..+++|+.|++++|.++.. |..+....+|+.|++++|++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 44433 34566666666666666643 333444456666666666653
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.2e-23 Score=195.18 Aligned_cols=233 Identities=21% Similarity=0.276 Sum_probs=134.1
Q ss_pred CceEEEEccCCCCCCCcc----hhhhccccCcEEecccccCC---CCCchhh------hcCCCCCcEEECCCCccCCC--
Q 036411 253 QKLIYLDVSKNSFEGNIP----YSISEMKELITLDLSRNNFS---GELPRSI------FSSCLSLETLDLSNNNFYGQ-- 317 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~~~~~~~~-- 317 (487)
++|++|++++|.+....+ ..+..+++|+.|++++|.+. +.+|..+ +..+++|++|++++|.+...
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 455555555555543222 22445566666666654322 2222222 34566666666666666542
Q ss_pred --CCcCCcCCCCccEEEcCCCccccccccccc----CC---------CcccEEEccCCccCC-Cch---hhhcccccccE
Q 036411 318 --LFPNFMNLTHLSSLRLNNNHFSGKMADGLL----SS---------TLLDVLDVSNNKLSG-DIP---HWIGNFSVLWL 378 (487)
Q Consensus 318 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~ 378 (487)
.+..+..+++|++|++++|.++......+. .+ ++|++|++++|+++. ..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 333445566666666666666433222222 22 667777777776652 233 34556677777
Q ss_pred EecCCccccCc-----chhhhccCcCCcEEeccCCcc-----ccccccccCCCcceEEEeeCcccCCc----chHhhhc-
Q 036411 379 LLMSENYLQGS-----IPVQLGNLESLEFIDISENGL-----SVSMVSLSNLSSVKHIYLHNNAINGL----IPIALLR- 443 (487)
Q Consensus 379 L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~- 443 (487)
|++++|.+... .+..+..+++|+.|++++|.+ ...+..+..+++|++|++++|.++.. ++.++..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 77777766521 222556677777777777776 33444555667777777777776654 2334433
Q ss_pred -cCcceEEeCCCCcccc----cCcccc-cccCceeEEeccCCccCCCC
Q 036411 444 -SSTLLTLDLRDNKFFG----RIPHQI-NELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 444 -~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~~~~~~~~ 485 (487)
+++|+.|+|++|.++. .++..+ .++++|+.|++++|++.+..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6777777777777765 355555 55677777777777776543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=7.3e-22 Score=176.90 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=185.7
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
..+..+++.++.+.+. .....+++|+.|+++++.+. .++. +..+++|++|++++|.+.+ ...+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEE
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEE
Confidence 3556667777766533 34567899999999999987 5554 5779999999999999875 35788899999999
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 412 (487)
+++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++.
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 99999987777778889999999999999987777788999999999999999987667778899999999999999875
Q ss_pred cccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 413 SMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 413 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
.... +..+++|+.|++++|.+++..+..+..+++|+.|++++|++. +.+|+|+.+++++|.+.|.+|.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccC
Confidence 5444 468899999999999999888888888999999999999875 3467899999999999988874
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1e-22 Score=190.48 Aligned_cols=234 Identities=18% Similarity=0.200 Sum_probs=132.8
Q ss_pred CCCCcEEEccCCcccccCCcc---cccccC-ceEEEEccCCCCCCCcchhhhcc-----ccCcEEecccccCCCCCchh-
Q 036411 227 YDKLRHLDISTNNFSGKLPEN---LGIVFQ-KLIYLDVSKNSFEGNIPYSISEM-----KELITLDLSRNNFSGELPRS- 296 (487)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~- 296 (487)
.++|+.|++++|.+.+..+.. ....++ +|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 344777777777766433311 112234 67777777777765555555443 67777777777766333322
Q ss_pred --hhcCC-CCCcEEECCCCccCCCCCcCC----cC-CCCccEEEcCCCccccccc----ccccCCC-cccEEEccCCccC
Q 036411 297 --IFSSC-LSLETLDLSNNNFYGQLFPNF----MN-LTHLSSLRLNNNHFSGKMA----DGLLSST-LLDVLDVSNNKLS 363 (487)
Q Consensus 297 --~~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~ 363 (487)
.+..+ ++|++|++++|.+.+.....+ .. .++|++|++++|.++.... ..+...+ +|++|++++|+++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 12333 677777777777655443332 22 2467777777777663322 2223333 6777777777766
Q ss_pred CCchhhhc----cc-ccccEEecCCccccCc----chhhhcc-CcCCcEEeccCCccccc-----cccccCCCcceEEEe
Q 036411 364 GDIPHWIG----NF-SVLWLLLMSENYLQGS----IPVQLGN-LESLEFIDISENGLSVS-----MVSLSNLSSVKHIYL 428 (487)
Q Consensus 364 ~~~~~~~~----~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~l~l~~~~~~~~-----~~~~~~~~~L~~L~l 428 (487)
+..+..+. .+ ++|++|++++|.+.+. .+..+.. .++|+.|++++|.+... ...+..+++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 55544333 33 4777777777766642 2333333 34677777777766421 122345666777777
Q ss_pred eCcccCCcchH-------hhhccCcceEEeCCCCccccc
Q 036411 429 HNNAINGLIPI-------ALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 429 ~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~ 460 (487)
++|.+....+. .+..+++|+.|++++|++.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 77765443322 334556677777777766443
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.6e-21 Score=174.73 Aligned_cols=192 Identities=20% Similarity=0.312 Sum_probs=130.1
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+++|++|+++++.+... + .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 46777888887777632 2 4667777888888877776 5554 56777888888887777542 356677777777
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++++|.+.+.. .+..+++|++|++++|++++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 77777776432 26667777777777777764433 6677777777777777664322 666777777777777765
Q ss_pred cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 412 VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
.... +..+++|++|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 4332 556677777777777776554 25666777777777777643
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.5e-21 Score=171.45 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=114.6
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCC-CcccccccccccCCCcccEE
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNN-NHFSGKMADGLLSSTLLDVL 355 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 355 (487)
+++.|++++|.+. .++...|.++++|++|++++|. +....+..|..+++|++|++++ |.+....+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3444444444443 3333334444444444444443 3333333344444444444444 44443333444455555555
Q ss_pred EccCCccCCCchhhhccccccc---EEecCCc-cccCcchhhhccCcCCc-EEeccCCccccccccccCCCcceEEEeeC
Q 036411 356 DVSNNKLSGDIPHWIGNFSVLW---LLLMSEN-YLQGSIPVQLGNLESLE-FIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
++++|++++ +|. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|+++..+......++|++|++++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 555555543 333 55555555 6667666 66544445567777777 77777777764444433347888888888
Q ss_pred cc-cCCcchHhhhcc-CcceEEeCCCCcccccCcccccccCceeEEeccCCc
Q 036411 431 NA-INGLIPIALLRS-STLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNS 480 (487)
Q Consensus 431 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 480 (487)
|. ++...+.++..+ ++|+.|++++|+++. +|.. .+++|+.|++++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 84 777667778888 888888888888864 3333 67788888888775
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.7e-22 Score=185.21 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=89.7
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCC-cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN-IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLET 306 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 306 (487)
++++.+++.++.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..+. .+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSE
T ss_pred ccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCE
Confidence 4555555555555433222 11 234555555555554432 334445555555555555554422222 2344555555
Q ss_pred EECCCC-ccCCC-CCcCCcCCCCccEEEcCCC-ccccc-ccccccCCC-cccEEEccCCc--cC-CCchhhhcccccccE
Q 036411 307 LDLSNN-NFYGQ-LFPNFMNLTHLSSLRLNNN-HFSGK-MADGLLSST-LLDVLDVSNNK--LS-GDIPHWIGNFSVLWL 378 (487)
Q Consensus 307 L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~ 378 (487)
|++++| .+.+. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ ..++..+..+++|++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 555555 23221 2222334455555555555 44322 233334444 55555555552 22 223344444555555
Q ss_pred EecCCcc-ccCcchhhhccCcCCcEEeccCCc-cc-cccccccCCCcceEEEeeCc
Q 036411 379 LLMSENY-LQGSIPVQLGNLESLEFIDISENG-LS-VSMVSLSNLSSVKHIYLHNN 431 (487)
Q Consensus 379 L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~ 431 (487)
|++++|. +++..+..+..+++|+.|++++|. +. .....+..+++|++|++++|
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 5555554 333334444444555555555553 11 01112334455555555544
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.8e-20 Score=169.05 Aligned_cols=203 Identities=22% Similarity=0.198 Sum_probs=146.3
Q ss_pred cCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 225 AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
..+++++.+++.++.+. .+|..+ ++.++.|++++|.+.+..+..+..+++|+.|++++|.+. .++.. ..+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred cccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 44566677777766665 455444 356777777777776555666777777788888777776 45442 567778
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
++|++++|.+. ..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888877776 34455667778888888888777666666777788888888888877666666777888888888888
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 435 (487)
+++...+..+..+++|+.|++++|+++..+..+...++|+.+++.+|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 877555556677788888888888887777777777788888888887764
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.9e-20 Score=163.60 Aligned_cols=180 Identities=22% Similarity=0.219 Sum_probs=140.1
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
...+.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45678888888887 777654 36888999998888877777788888888888888888877777777888888888
Q ss_pred ccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCC
Q 036411 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 435 (487)
+++|++++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|+++.... .+..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88888887777777888888888888888876555567777888888888887765554 46677788888888888777
Q ss_pred cchHhhhccCcceEEeCCCCccccc
Q 036411 436 LIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 436 ~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
..+..+..+++|+.|++++|++.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7666777777888888888877543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.8e-21 Score=179.33 Aligned_cols=251 Identities=19% Similarity=0.189 Sum_probs=194.1
Q ss_pred CCcEEEccCCcccccCCcccccc-cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIV-FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
.++.++++++.+.+ ..+... .+.++.++++++.+.+..+. +..+++|+.|++++|.+.+......+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 47899999887652 222211 27899999999998865544 55789999999999998744234456889999999
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCC-ccccc-ccccccCCCcccEEEccCC-ccCCC-chhhhcccc-cccEEecC
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNN-HFSGK-MADGLLSSTLLDVLDVSNN-KLSGD-IPHWIGNFS-VLWLLLMS 382 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~ 382 (487)
++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999887666677888999999999999 56642 4555778999999999999 88754 577788999 99999999
Q ss_pred Ccc--cc-CcchhhhccCcCCcEEeccCCc-cc-cccccccCCCcceEEEeeCcc-cCCcchHhhhccCcceEEeCCCCc
Q 036411 383 ENY--LQ-GSIPVQLGNLESLEFIDISENG-LS-VSMVSLSNLSSVKHIYLHNNA-INGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 383 ~~~--~~-~~~~~~~~~~~~L~~l~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
+|. ++ ...+..+..+++|+.|++++|. ++ .....+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 994 44 3456677889999999999999 43 456677788999999999995 33222236788999999999999
Q ss_pred ccccCcccccccC-ceeEEeccCCccCCCCCC
Q 036411 457 FFGRIPHQINELS-NLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 457 ~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~p~ 487 (487)
++.. .+..+. +++.|++++|.+++..|.
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 5433 344432 356666899999998874
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=176.95 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=111.6
Q ss_pred ccCcEEecccccCCCCCchhhh-cCCCCCcEEECCCCccCCCCC----cCCcCCCCccEEEcCCCcccccccccccCCCc
Q 036411 277 KELITLDLSRNNFSGELPRSIF-SSCLSLETLDLSNNNFYGQLF----PNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL 351 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 351 (487)
++|++|++++|.+.+..+...+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3344455544444433333322 344445555555554443221 11223455555555555554444444555555
Q ss_pred ccEEEccCCccCCC--c--hhhhcccccccEEecCCccccCcchh----hhccCcCCcEEeccCCccccc-cccccCC--
Q 036411 352 LDVLDVSNNKLSGD--I--PHWIGNFSVLWLLLMSENYLQGSIPV----QLGNLESLEFIDISENGLSVS-MVSLSNL-- 420 (487)
Q Consensus 352 L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~-~~~~~~~-- 420 (487)
|++|++++|++.+. . +..+..+++|++|++++|.++. .+. .+..+++|+.|++++|.+... +..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555554321 1 1122455666666666666542 222 235566777777777766543 3333333
Q ss_pred -CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 421 -SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 421 -~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
++|++|++++|.++.. |..+. ++|+.|++++|++++. |. +..+++|+.|++++|++..
T Consensus 250 ~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6788888888888754 44443 7888888888888643 33 6788889999999998864
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.1e-20 Score=167.85 Aligned_cols=195 Identities=24% Similarity=0.334 Sum_probs=162.4
Q ss_pred cCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 225 AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
..+++|+.|++.++.+. .++ .+ ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~-~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTC
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hh-hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCCC
Confidence 56788999999999887 344 23 346899999999999885544 888999999999999987 5653 6889999
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
++|++++|.+.+. ..+..+++|+.|++++|.+.+... +..+++|+.|++++|++++..+ +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 9999999998763 348889999999999999875433 7788999999999999986544 889999999999999
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCc
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
.+.+..+ +..+++|+.|++++|++.... .+..+++|+.|++++|.++..
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecC
Confidence 9885433 788999999999999997555 477899999999999998864
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=171.09 Aligned_cols=227 Identities=17% Similarity=0.141 Sum_probs=178.7
Q ss_pred CCCcEEEccCCcccccCCcccc--cccCceEEEEccCCCCCCCcchhh--hccccCcEEecccccCCCCCc---hhhhcC
Q 036411 228 DKLRHLDISTNNFSGKLPENLG--IVFQKLIYLDVSKNSFEGNIPYSI--SEMKELITLDLSRNNFSGELP---RSIFSS 300 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~ 300 (487)
..++.+.+..+.+.+.....+. ...++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3477888887765432211111 123579999999999987777776 889999999999999985443 233457
Q ss_pred CCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccc--c--cccccCCCcccEEEccCCccCCCchh----hhcc
Q 036411 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGK--M--ADGLLSSTLLDVLDVSNNKLSGDIPH----WIGN 372 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~ 372 (487)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . ...+..+++|++|++++|+++. .+. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999888888899999999999999987542 1 2334678899999999999863 333 3578
Q ss_pred cccccEEecCCccccCcchhhhccC---cCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceE
Q 036411 373 FSVLWLLLMSENYLQGSIPVQLGNL---ESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLT 449 (487)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 449 (487)
+++|++|++++|.+.+..|..+..+ ++|+.|++++|+++..+..+. ++|++|++++|++++. +. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 8999999999999987767666665 799999999999986666553 8999999999999975 32 577899999
Q ss_pred EeCCCCcccc
Q 036411 450 LDLRDNKFFG 459 (487)
Q Consensus 450 L~l~~~~~~~ 459 (487)
|++++|++++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999864
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.6e-19 Score=159.59 Aligned_cols=180 Identities=23% Similarity=0.249 Sum_probs=156.8
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
...++++++++.+. .++..+. ++++.|++++|.+. .++...|.++++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 46778999999887 4554443 68999999999998 66666688999999999999999887777889999999999
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 412 (487)
+++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999997777788899999999999999997777788999999999999999997666688999999999999999975
Q ss_pred ccc-cccCCCcceEEEeeCcccCCc
Q 036411 413 SMV-SLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 413 ~~~-~~~~~~~L~~L~l~~~~~~~~ 436 (487)
... .+..+++|+.|++.+|.+...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 554 566899999999999999865
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.4e-20 Score=163.76 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=135.2
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEeccccc-CCCCCchhhhcCCCCCcEEECCC-CccCCCCCcCCcCCCCccE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN-FSGELPRSIFSSCLSLETLDLSN-NNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 330 (487)
+++++|++++|.+++..+..+..+++|+.|++++|. +. .++...|.++++|++|++++ |.+.+..+..|..+++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 467777777777765545566677777777777775 55 66666667777777777776 6666555556667777777
Q ss_pred EEcCCCcccccccccccCCCccc---EEEccCC-ccCCCchhhhccccccc-EEecCCccccCcchhhhccCcCCcEEec
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLD---VLDVSNN-KLSGDIPHWIGNFSVLW-LLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
|++++|.+.+ .+. +..+++|+ .|++++| .+.+..+..+..+++|+ +|++++|.+....+..+.. ++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 7777777664 333 56666666 8888887 77655556677788888 8888888777333333444 77888888
Q ss_pred cCCc-cccc-cccccCC-CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCc
Q 036411 406 SENG-LSVS-MVSLSNL-SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 406 ~~~~-~~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
++|+ ++.. ...+..+ ++|++|++++|+++...+. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 8884 6544 3445677 8888888888888765544 45678888887764
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=1.1e-20 Score=176.69 Aligned_cols=251 Identities=16% Similarity=0.145 Sum_probs=189.7
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcc----hhhhccc-cCcEEecccccCCCCCchhhhcCC-----C
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP----YSISEMK-ELITLDLSRNNFSGELPRSIFSSC-----L 302 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-----~ 302 (487)
+.++.+.+++.++... ..+++|++|++++|.+.+... ..+..++ +|+.|++++|.+.+..+. .+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCT
T ss_pred cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCC
Confidence 4667777765444433 345679999999999986665 6777888 899999999999844333 33333 8
Q ss_pred CCcEEECCCCccCCCCCcC----CcCC-CCccEEEcCCCcccccccccc----cC-CCcccEEEccCCccCCCchh----
Q 036411 303 SLETLDLSNNNFYGQLFPN----FMNL-THLSSLRLNNNHFSGKMADGL----LS-STLLDVLDVSNNKLSGDIPH---- 368 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~---- 368 (487)
+|++|++++|.+.+..+.. +..+ ++|++|++++|.+++.....+ .. +++|++|++++|++++..+.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999987655553 3344 899999999999986555443 33 46999999999998864443
Q ss_pred hhcccc-cccEEecCCccccCcchhhh----ccC-cCCcEEeccCCcccc-----ccccccC-CCcceEEEeeCcccCCc
Q 036411 369 WIGNFS-VLWLLLMSENYLQGSIPVQL----GNL-ESLEFIDISENGLSV-----SMVSLSN-LSSVKHIYLHNNAINGL 436 (487)
Q Consensus 369 ~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~~ 436 (487)
.+...+ +|++|++++|.+.+..+..+ ..+ ++|+.|++++|.+.. ....+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 445555 99999999999987666544 445 599999999999865 3444444 46999999999999986
Q ss_pred chHh----hhccCcceEEeCCCCccccc-------CcccccccCceeEEeccCCccCCCC
Q 036411 437 IPIA----LLRSSTLLTLDLRDNKFFGR-------IPHQINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 437 ~~~~----~~~~~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
.... +..+++|+.|++++|.+... ++..+..+++|+.|++++|++....
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 5533 45679999999999984332 3346678899999999999987653
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=4.3e-21 Score=181.38 Aligned_cols=102 Identities=23% Similarity=0.250 Sum_probs=50.2
Q ss_pred ccccccccccCCcccEEeCCCCcccCCcchHh---hhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccccc
Q 036411 167 LNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWL---LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGK 243 (487)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (487)
...+...+..+++|+.|++++|.+.+..+..+ +..+++|++|++++|.+.. +.+.
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~----------------------l~~~ 78 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR----------------------VKDE 78 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS----------------------CGGG
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc----------------------cccc
Confidence 34455556667777777777777654333322 1234444444444432221 1111
Q ss_pred CCccc------ccccCceEEEEccCCCCCC----CcchhhhccccCcEEecccccCC
Q 036411 244 LPENL------GIVFQKLIYLDVSKNSFEG----NIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 244 ~~~~~------~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
+|..+ ...+++|++|++++|.+.. .++..+..+++|+.|++++|.+.
T Consensus 79 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 79 IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp SHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 22221 1123556666666666554 23344555666666666666654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=7.3e-19 Score=163.44 Aligned_cols=240 Identities=15% Similarity=0.083 Sum_probs=120.1
Q ss_pred cEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc-hhhhccccCcE-Ee
Q 036411 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP-YSISEMKELIT-LD 283 (487)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~ 283 (487)
+.++++++.++.++.. -.++++.|++++|.++ .++...+..+++|++|+|++|.+.+..+ .++.++++++. +.
T Consensus 12 ~~v~C~~~~Lt~iP~~----l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD----LPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTT----CCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcC----cCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 3455555555433222 1245666666666665 4444444445666666666666543322 24455555544 33
Q ss_pred cccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCC-cccccccccccCCC-cccEEEccCCc
Q 036411 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN-HFSGKMADGLLSST-LLDVLDVSNNK 361 (487)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~ 361 (487)
+.+|++. .++...|..+++|++|++++|.+.......+.....+..+++.++ .+.......+.... .++.|++++|+
T Consensus 87 ~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 3445555 555555666666666666666665444444444455555555442 34333333333332 45566666666
Q ss_pred cCCCchhhhcccccccEEecCC-ccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHh
Q 036411 362 LSGDIPHWIGNFSVLWLLLMSE-NYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIA 440 (487)
Q Consensus 362 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 440 (487)
++. ++......++++++++.+ |.+....+..|..+++|+.|++++|+++..+.. .+.+|+.|...++.-.+..| .
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~ 241 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-T 241 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-C
T ss_pred ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-C
Confidence 652 333333345566666654 334322333455666666666666665433321 23445555544443222333 2
Q ss_pred hhccCcceEEeCCCC
Q 036411 441 LLRSSTLLTLDLRDN 455 (487)
Q Consensus 441 ~~~~~~L~~L~l~~~ 455 (487)
+..+++|+.+++.++
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 445556666665543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-18 Score=149.26 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=95.5
Q ss_pred EEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCC
Q 036411 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335 (487)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (487)
+.++.+++.++ ..+..+ .++++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555555544 222222 345666666666665 55555556666666666666666544444455566666666666
Q ss_pred CcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc
Q 036411 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV 415 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 415 (487)
|.+.+.....+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 6665444444555566666666666655444444555556666666655555433334555555555555555432
Q ss_pred cccCCCcceEEEeeCcccCCcchHhhh
Q 036411 416 SLSNLSSVKHIYLHNNAINGLIPIALL 442 (487)
Q Consensus 416 ~~~~~~~L~~L~l~~~~~~~~~~~~~~ 442 (487)
..+++|+.|++..|.+++.+|..+.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCc
Confidence 1334444444444544444444333
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.6e-18 Score=146.39 Aligned_cols=180 Identities=22% Similarity=0.207 Sum_probs=123.1
Q ss_pred cEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccC
Q 036411 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSN 359 (487)
Q Consensus 280 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 359 (487)
+.++.+++.+. .+|... .++|++|++++|.+.+.....+..+++|++|++++|.+.+.....+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45666666665 566543 45777777777777655555566777777777777777655555566777777777777
Q ss_pred CccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEeeCcccCCcch
Q 036411 360 NKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLHNNAINGLIP 438 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 438 (487)
|++++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++..... +..+++|++|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 777766556667777777777777777755555567777777777777777544443 4567777777777776653
Q ss_pred HhhhccCcceEEeCCCCcccccCcccccccCc
Q 036411 439 IALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470 (487)
Q Consensus 439 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 470 (487)
.+++|+.|+++.|++++.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2456777777777777777777776654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.8e-18 Score=153.32 Aligned_cols=190 Identities=20% Similarity=0.252 Sum_probs=146.4
Q ss_pred eEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcC
Q 036411 255 LIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334 (487)
Q Consensus 255 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 334 (487)
+..+.+.+..+.+. .....+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 44445555555432 23457888999999999887 6654 5778999999999998876443 7888999999999
Q ss_pred CCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccc
Q 036411 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM 414 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 414 (487)
+|.+.+. ..+..+++|+.|++++|++.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++....
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 9988742 3477888999999999988754 4577888899999999888754 56778888888999888887554
Q ss_pred ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
. +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++..
T Consensus 173 ~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred h-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 4 77888888888888888865 3 377788888888888887643
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=9.7e-18 Score=151.33 Aligned_cols=174 Identities=20% Similarity=0.265 Sum_probs=149.1
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccE
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (487)
.+++|++|++++|.+... ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+ .+.+..+++|+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCE
Confidence 357899999999998744 35788999999999999998 5665 7889999999999999875 345889999999
Q ss_pred EEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
|++++|.+.+. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 99999998753 4677899999999999999865 678999999999999999986544 88999999999999999
Q ss_pred ccccccccCCCcceEEEeeCcccCCcch
Q 036411 411 SVSMVSLSNLSSVKHIYLHNNAINGLIP 438 (487)
Q Consensus 411 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 438 (487)
+.. ..+..+++|+.|++++|++.....
T Consensus 191 ~~l-~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 191 SDL-RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CBC-GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCC-hhhccCCCCCEEECcCCcccCCcc
Confidence 754 457899999999999999886543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1e-17 Score=155.73 Aligned_cols=240 Identities=19% Similarity=0.154 Sum_probs=186.2
Q ss_pred cEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcE-EEC
Q 036411 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLET-LDL 309 (487)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l 309 (487)
+.++.+++.++ .+|..+ ++++++|++++|.++...+.+|.++++|+.|++++|.+.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 677665 4689999999999985555678999999999999999876788888999998876 555
Q ss_pred CCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCC-ccCCCchhhhcccc-cccEEecCCcccc
Q 036411 310 SNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN-KLSGDIPHWIGNFS-VLWLLLMSENYLQ 387 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 387 (487)
.+|.+....+..|..+++|+.|++++|.+.......+....++..+++.++ .+....+..+..+. .++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 567887777788999999999999999998666666667778889999764 55544445566654 6889999999998
Q ss_pred CcchhhhccCcCCcEEeccC-Cccccccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccc
Q 036411 388 GSIPVQLGNLESLEFIDISE-NGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI 465 (487)
Q Consensus 388 ~~~~~~~~~~~~L~~l~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 465 (487)
. .+.......+|+.+++.+ |.+...+. .|..+++|++|++++|+++...+..+. +|+.|.+.++.-...+| .+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CT
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cc
Confidence 4 444444567899999975 55655543 567899999999999999987665544 56666665555445666 47
Q ss_pred cccCceeEEeccCC
Q 036411 466 NELSNLHFLLLRGN 479 (487)
Q Consensus 466 ~~l~~L~~L~l~~~ 479 (487)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 89999999999764
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=9.9e-18 Score=163.71 Aligned_cols=188 Identities=25% Similarity=0.350 Sum_probs=134.6
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
+++.|++++|.+++ ++..+ .++|+.|++++|.+. .+| ..+++|+.|++++|.+.+ ++. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 78888888888875 44433 367888888888887 777 236788888888888776 333 443 8888888
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 413 (487)
++|.+++ .+. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ .|. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 8888875 333 56788888888888875 444 56788888888888774 444 54 7888888888888755
Q ss_pred cccccCCCcc-------eEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccC
Q 036411 414 MVSLSNLSSV-------KHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELS 469 (487)
Q Consensus 414 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 469 (487)
+. +.. +| +.|++++|.++.+ |..+..+++|+.|++++|++++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 432 66 8888888888754 44555578888888888888777777766654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=7e-18 Score=166.68 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=159.9
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
.+..+.+..+.+.+.. .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 4555667777665433 3567889999999999987 6664 6789999999999999876443 788999999999
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 413 (487)
++|.+.. ...+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+...
T Consensus 95 s~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 9999874 23678889999999999998753 4588899999999999988754 5678889999999999998755
Q ss_pred cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCcee
Q 036411 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLH 472 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 472 (487)
.+ +..+++|+.|++++|.+.+. ..+..+++|+.|+|++|+++......+..+..+.
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~ 224 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEEC
T ss_pred hh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecc
Confidence 55 77889999999999998865 3577889999999999988654444444444333
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.9e-17 Score=161.42 Aligned_cols=174 Identities=20% Similarity=0.271 Sum_probs=150.3
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccE
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (487)
.++.|+.|++++|.+... + .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+ .+.+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC--ChhhccCCCCCE
Confidence 357899999999998743 2 5888999999999999998 5655 6889999999999999875 347889999999
Q ss_pred EEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 99999999743 4578899999999999999865 678999999999999999986555 88999999999999999
Q ss_pred ccccccccCCCcceEEEeeCcccCCcch
Q 036411 411 SVSMVSLSNLSSVKHIYLHNNAINGLIP 438 (487)
Q Consensus 411 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 438 (487)
... ..+..+++|+.|++++|++.....
T Consensus 188 ~~l-~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 SDL-RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CBC-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCC-hHHccCCCCCEEEccCCcCcCCcc
Confidence 754 568899999999999999886543
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.5e-17 Score=142.03 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=100.1
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
+.++.+++.+... +..+. +.++.|++++|.+....+..+..+++|+.|++++|++.+..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5667777666532 33322 56777777777777555556677777777777777776666677777777777777777
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
.++...+..|..+++|+.|++++|++... ...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77654445566677777777777766543 344556667777777777766666666666666777777777664
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.6e-17 Score=152.59 Aligned_cols=175 Identities=27% Similarity=0.276 Sum_probs=106.0
Q ss_pred EEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhc-CCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcC
Q 036411 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS-SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334 (487)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 334 (487)
+.++++++.++ .++..+ .+.++.|++++|.+. .++...|. .+++|+.|++++|.+.+..+..|..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 45666666665 333333 234677777777776 55555555 66777777777777665555566667777777777
Q ss_pred CCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh---ccCcCCcEEeccCCccc
Q 036411 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL---GNLESLEFIDISENGLS 411 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~ 411 (487)
+|.+.......+..+++|+.|++++|++....+..+..+++|++|++++|.+....+..+ ..+++|+.|++++|++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777665555556666777777777777665556666666777777777766664333333 34566666666666664
Q ss_pred ccc-ccccCCCc--ceEEEeeCcccC
Q 036411 412 VSM-VSLSNLSS--VKHIYLHNNAIN 434 (487)
Q Consensus 412 ~~~-~~~~~~~~--L~~L~l~~~~~~ 434 (487)
... ..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 322 22334444 355666666655
No 106
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=2.9e-16 Score=148.37 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=205.6
Q ss_pred cccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCcccc
Q 036411 21 IDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSV 100 (487)
Q Consensus 21 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 100 (487)
+.+...+|..+.+|+.+.+..+ +. .+...+|.+|++|+.+++.++ +.......|.+|++|+.+.+... +.......
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3445556777777777777644 32 244566777777777777654 33344456777777777666543 33233445
Q ss_pred ccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcc
Q 036411 101 LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180 (487)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 180 (487)
|..+..++........ ......|..+++|+.+.+. .....+....|..+.+|+.+.+..+.-......+..+..|
T Consensus 136 F~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~--~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLP--DSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTC
T ss_pred eecccccccccCcccc---ccchhhhcccCCCcEEecC--CccceeccccccCCCCceEEEcCCCceEeCchhhcccccc
Confidence 5555443333322221 1223456777777777763 3345566667777777777777665334445566677777
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEc
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 260 (487)
+.+.+..+... +... +..+..|+.+.+.... . ......+..+..++.+.+..+.. .+....+..+..++.+..
T Consensus 211 ~~i~~~~~~~~--i~~~-~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDF-ALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp CBCCCCTTCCE--ECTT-TTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEE
T ss_pred ceeecCCCceE--eehh-hcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcc--eeeccccccccccceecc
Confidence 77766554321 1122 2245677777765432 1 11222446667777777765532 233333444566777766
Q ss_pred cCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccc
Q 036411 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 340 (487)
....+ ....+..+.+|+.+.+.++ +. .++...|.+|.+|+.+++.++ +......+|..+.+|+.+++..+ +..
T Consensus 284 ~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 284 GSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp CSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred Cceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 55433 2345677888888888654 44 677778888889998888654 44455667888888999888766 555
Q ss_pred cccccccCCCcccEEEccCCccCCCchhhhcccccccEE
Q 036411 341 KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLL 379 (487)
Q Consensus 341 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 379 (487)
....+|.+|.+|+++++..+- . .+...|.+|++|+.+
T Consensus 357 I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred ehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 667788888999999887552 2 345678888888765
No 107
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=3.1e-16 Score=148.23 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=46.3
Q ss_pred cccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccc
Q 036411 48 RTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114 (487)
Q Consensus 48 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 114 (487)
+...+|.+|.+|+++.+..+ +......+|.+|++|+.+++..+ ++......|..|.+|+.+.+..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 45567888888888888754 55455567888888888888654 4445556777888887766653
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=141.48 Aligned_cols=152 Identities=28% Similarity=0.247 Sum_probs=106.8
Q ss_pred CcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc-ccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 304 LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA-DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
-+.++++++.+.+ ++..+ .+.+++|++++|.+.+..+ ..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3578888887764 33333 2456788888888775533 346677788888888887776666677777888888888
Q ss_pred CccccCcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+|.+....+..|..+++|+.|++++|+++.. +..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8777766666677777777777777777544 445556777777777777777766667777777777777777764
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=6.2e-17 Score=158.08 Aligned_cols=188 Identities=28% Similarity=0.388 Sum_probs=150.3
Q ss_pred CCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
+++.|+++++.+.+ +|..+ +++|++|++++|.++ .++ ..+++|+.|++++|.+. .+|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEE
Confidence 78999999998874 66655 378999999999988 444 45789999999999998 5777 443 999999
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccC
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG 388 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 388 (487)
+++|.+.+ ++. .+++|+.|++++|.+++ .+. .+++|+.|++++|++++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 99999876 333 57899999999999875 333 46889999999999885 555 55 89999999999988
Q ss_pred cchhhhccCcCC-------cEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccC
Q 036411 389 SIPVQLGNLESL-------EFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSS 445 (487)
Q Consensus 389 ~~~~~~~~~~~L-------~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 445 (487)
..|. +.. +| +.|++++|.++..+..+..+++|+.|++++|.+++..+..+..+.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5555 543 67 999999999988888788899999999999999988887776543
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=5.1e-17 Score=151.57 Aligned_cols=175 Identities=24% Similarity=0.232 Sum_probs=138.2
Q ss_pred cEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCc-CCCCccEEEcCCCcccccccccccCCCcccEEEcc
Q 036411 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM-NLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVS 358 (487)
Q Consensus 280 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 358 (487)
+.++++++.+. .+|..+ ...++.|++++|.+.+.....+. .+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57888888887 788754 35688999999988876666676 88899999999998887777778888889999999
Q ss_pred CCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc----cCCCcceEEEeeCcccC
Q 036411 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL----SNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~ 434 (487)
+|++....+..|..+++|++|++++|.+....+..|..+++|+.|++++|.++..+... ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99887666677888888888888888888666777888888888888888886555443 35788888888888888
Q ss_pred CcchHhhhccCc--ceEEeCCCCccc
Q 036411 435 GLIPIALLRSST--LLTLDLRDNKFF 458 (487)
Q Consensus 435 ~~~~~~~~~~~~--L~~L~l~~~~~~ 458 (487)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 777677777766 377888888875
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1e-16 Score=135.89 Aligned_cols=152 Identities=19% Similarity=0.292 Sum_probs=78.9
Q ss_pred hccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCccc
Q 036411 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLD 353 (487)
Q Consensus 274 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (487)
..+++|+.|++++|.+. .++. +..+++|++|++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44566666666666665 5552 4556666666666664432 23455556666666666655544455555555566
Q ss_pred EEEccCCccCCCchhhhcccccccEEecCCcc-ccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcc
Q 036411 354 VLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY-LQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNA 432 (487)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (487)
.|++++|++++..+..+..+++|++|++++|. +. ..+ .+..+++|+.|++++|++.... .+..+++|+.|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 66666655554445555555555555555554 33 222 3444445555555554443221 33344444444444444
Q ss_pred c
Q 036411 433 I 433 (487)
Q Consensus 433 ~ 433 (487)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.6e-16 Score=137.91 Aligned_cols=155 Identities=19% Similarity=0.109 Sum_probs=120.5
Q ss_pred CCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+.+.++.+++.+... +..+ .++|+.|++++|.+.+..+..+..+++|+.|++++|++....+..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 467788887776533 3333 2788888888888887777778888888888888888876666677888888888888
Q ss_pred CccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+|.++...+..|..+++|+.|++++|++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 888886666667788888888888888877777777888888888888888877667777788888888888887543
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.1e-17 Score=152.22 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=150.0
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCcc----CCCCCcCCcCCCC
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF----YGQLFPNFMNLTH 327 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~ 327 (487)
+++|+++++.+ .++.....+|.++++|+.+++.++.+. .++...|.++.++..+....... ......+|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56777777776 565555666777777777777777776 67777777766666666554221 1122233445555
Q ss_pred cc-EEEcCCCc-ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 328 LS-SLRLNNNH-FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 328 L~-~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
|+ .+.+.... +............++..+.+.+.-...........|++|+++++.+|.++......|..|++|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 55 34443321 11111111123445566666554221111112234899999999999888666778999999999999
Q ss_pred cCCccccccccccCCCcce-EEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEec
Q 036411 406 SENGLSVSMVSLSNLSSVK-HIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLL 476 (487)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 476 (487)
.++-.......|.+|++|+ .+++.+ +++.+.+.+|..|++|+.|+++++.++...+.+|.++++|+.++.
T Consensus 258 ~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9883345666778999999 999988 788788889999999999999999998888889999999999874
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=7.7e-17 Score=136.63 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=72.9
Q ss_pred ccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCCCcce
Q 036411 346 LLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNLSSVK 424 (487)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~ 424 (487)
+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.. .+..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 334444444444444332 11234445555555555555544344455555556666666655542 344445566666
Q ss_pred EEEeeCcc-cCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 425 HIYLHNNA-INGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 425 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
+|++++|. ++.. + .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|+|.+
T Consensus 140 ~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 140 SIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 66666665 4433 3 46667777777777777754 22 66777888888888877754
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=3.1e-16 Score=135.18 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=61.6
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEc
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (487)
+++.|++++|.+. .++...|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 3444444444444 333333444444444444444444333444444444444444444444333333444445555555
Q ss_pred cCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++|++.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55555444444455555555555555555443334444455555555555544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.1e-17 Score=144.78 Aligned_cols=171 Identities=25% Similarity=0.304 Sum_probs=132.3
Q ss_pred ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccE
Q 036411 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354 (487)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 354 (487)
.+.++..++++++.+. .++. +..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 4566777788888887 5552 56788999999999988653 267788999999999998875444 778899999
Q ss_pred EEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccC
Q 036411 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 434 (487)
|++++|++++. +. +.. ++|++|++++|.+++. ..+..+++|+.|++++|+++.. ..+..+++|+.|++++|.++
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCc
Confidence 99999988753 32 222 8888999998888743 3577888888888888888754 46777888888888888887
Q ss_pred CcchHhhhccCcceEEeCCCCccccc
Q 036411 435 GLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 435 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 5677788888888888887644
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=3.6e-16 Score=134.79 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=44.0
Q ss_pred cCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccE
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 378 (487)
..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 33334444444443333332233333333444444443333333333333444444444444443333333444444444
Q ss_pred EecCCccccCcchhhhccCcCCcEEeccCCc
Q 036411 379 LLMSENYLQGSIPVQLGNLESLEFIDISENG 409 (487)
Q Consensus 379 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 409 (487)
|++++|.+++..+..|..+++|+.|++++|+
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 4444444443333334444444444444443
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=7.7e-16 Score=133.67 Aligned_cols=155 Identities=25% Similarity=0.249 Sum_probs=136.1
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEc
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (487)
.-+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567899988887 888754 489999999999999887888999999999999999998666677889999999999
Q ss_pred cCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCCc
Q 036411 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 436 (487)
++|++++..+..+..+++|++|++++|.+. ..|..+..+++|+.|++++|++..... .+..+++|+.|++.+|.+...
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999777788899999999999999998 678888999999999999999975553 466899999999999998865
Q ss_pred c
Q 036411 437 I 437 (487)
Q Consensus 437 ~ 437 (487)
.
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 3
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=8.4e-17 Score=148.21 Aligned_cols=288 Identities=15% Similarity=0.101 Sum_probs=141.0
Q ss_pred cccccEEecCCccccccccccccC-CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccC------
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNT-LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNN------ 79 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 79 (487)
+.+++.|.+.++ +.......+.. +++|++|+++++.+...... -...+.++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc--cccccccccccccccccC---HHHhcccccccc
Confidence 567888888865 33233334444 78999999999987611111 112222444444444332 244555
Q ss_pred --CCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCC---CccccccccccCC
Q 036411 80 --LTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGN---DMLQVKTENWLPT 154 (487)
Q Consensus 80 --l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~~ 154 (487)
|++|+++++.+ .++.....+|..|++|+.++++++.+. ......|..+.++..+...... ....+...++..+
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 666555667777777777777766554 2223344444444443332110 1111222233333
Q ss_pred CCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhc---CCCCcEEEcccCCCCCCCCCCCCcCCCCCc
Q 036411 155 YPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQN---NTGLEVLILWNNSFSGILPRLPNAKYDKLR 231 (487)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 231 (487)
..|+. .+.+.... .++..++.. ..+++.+.+.+.-..... ......+++|+
T Consensus 176 ~~L~~----------------------~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~l~~~~~~L~ 229 (329)
T 3sb4_A 176 EPLET----------------------TIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADF-KLIRDYMPNLV 229 (329)
T ss_dssp CCCEE----------------------EEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHH-HHHHHHCTTCC
T ss_pred cccce----------------------eEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHH-HHHHHhcCCCe
Confidence 33331 22221111 112211111 122333333221100000 00001234555
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCc-EEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELI-TLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+++..+.+. .++...+..+.+|+++++.++ +......+|.++++|+ .+++.+ .+. .++...|.+|++|+.+++.
T Consensus 230 ~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 230 SLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp EEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEEC
T ss_pred EEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeC
Confidence 5555555444 444444444555666666554 4434455566666666 666665 444 5666666666666666666
Q ss_pred CCccCCCCCcCCcCCCCccEEE
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
++.+......+|..+++|+.++
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCccchhhhcCCcchhhhc
Confidence 6666555555666666666654
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.3e-16 Score=141.63 Aligned_cols=150 Identities=24% Similarity=0.279 Sum_probs=66.5
Q ss_pred hhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcc
Q 036411 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLL 352 (487)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 352 (487)
+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. +. +.. ++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L 108 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACL 108 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSC
T ss_pred hhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Ccc
Confidence 334444444444444443 333 13344444444444444433221 44444444444444444321 11 111 445
Q ss_pred cEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcc
Q 036411 353 DVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNA 432 (487)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (487)
+.|++++|++++. ..+..+++|++|++++|.+++. + .+..+++|+.|++++|++... ..+..+++|+.|++++|.
T Consensus 109 ~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 5555555544422 1344455555555555554422 1 344455555555555555433 344445555555555555
Q ss_pred cCC
Q 036411 433 ING 435 (487)
Q Consensus 433 ~~~ 435 (487)
+..
T Consensus 184 ~~~ 186 (263)
T 1xeu_A 184 CVN 186 (263)
T ss_dssp EEC
T ss_pred ccC
Confidence 443
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=2.1e-15 Score=141.64 Aligned_cols=240 Identities=11% Similarity=0.083 Sum_probs=158.4
Q ss_pred CCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
+|+.+.+..+ +. .+....+.. .+|+.+.+.. .+......+|.+|++|+.+++.++.+. .++...|. +.+|+.+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEE
Confidence 4555555443 22 222222222 3566666664 344345556777777777777777776 67777776 57777777
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcccc-
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ- 387 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 387 (487)
+.++ +......+|..+++|+.+++.++ +......+|.+ .+|+.+.+.. .+.......|.+|++|+.+.+.++.+.
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccC
Confidence 7644 44445566777777777777664 34344555555 6777777743 344455667778888888887776543
Q ss_pred ----CcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcc
Q 036411 388 ----GSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463 (487)
Q Consensus 388 ----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 463 (487)
......|..|++|+.+.+.++--......|.+|++|+.+++.++ ++.+...+|..| +|+.+++.+|........
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred CcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 24556788888888888875422445566678888888888544 666667788888 899999888887766667
Q ss_pred cccccC-ceeEEeccCCc
Q 036411 464 QINELS-NLHFLLLRGNS 480 (487)
Q Consensus 464 ~l~~l~-~L~~L~l~~~~ 480 (487)
.|..++ +++.|++..+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SCCCSCTTCCEEEECGGG
T ss_pred cccCCCCCccEEEeCHHH
Confidence 788775 78888877654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=126.02 Aligned_cols=132 Identities=21% Similarity=0.189 Sum_probs=80.0
Q ss_pred CcccEEEccCCccC-CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCCCcceEEE
Q 036411 350 TLLDVLDVSNNKLS-GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNLSSVKHIY 427 (487)
Q Consensus 350 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~ 427 (487)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.. .+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45566666666554 34455555666666666666665533 455566666666666666654 233333466677777
Q ss_pred eeCcccCCcch-HhhhccCcceEEeCCCCcccccCc---ccccccCceeEEeccCCccCC
Q 036411 428 LHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 428 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~ 483 (487)
+++|.+++... ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 77776665432 456666777777777777654443 366677777777777776653
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=1.2e-14 Score=136.50 Aligned_cols=241 Identities=11% Similarity=0.109 Sum_probs=188.9
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
..++.+.+... +. .+....+.. .+|+.+.+..+ +......+|.++ +|+.+.+.+ .+. .++...|.+|.+|+.+
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cC-EehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 44555555442 22 233333333 37999999776 554666677775 799999986 665 7888889999999999
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcccc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
++.+|.+.......|. +.+|+.+.+.++ +......+|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 9999888766566665 689999999855 66577888999999999999875 44455667777 789999995 4455
Q ss_pred CcchhhhccCcCCcEEeccCCccc------cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccC
Q 036411 388 GSIPVQLGNLESLEFIDISENGLS------VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461 (487)
Q Consensus 388 ~~~~~~~~~~~~L~~l~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (487)
......|..|++|+.+++.++... .....|.+|++|+.+++. +.++.+...+|..|++|+.+.|.++ ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 466778999999999999988764 667788899999999998 4577788889999999999999765 66677
Q ss_pred cccccccCceeEEeccCCccCC
Q 036411 462 PHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 462 ~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
..+|.++ +|+.+++.+|....
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCB
T ss_pred HHhCCCC-CCCEEEEcCCCCcc
Confidence 7899999 99999999987553
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=5.5e-18 Score=166.47 Aligned_cols=122 Identities=23% Similarity=0.322 Sum_probs=102.5
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++..+ .+..+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 48899999998875 565 888999999999999988 77888899999999999999988654 788899999999999
Q ss_pred cccCCcc-hHhhhccCcceEEeCCCCcccccCcc---cccccCceeEEec
Q 036411 431 NAINGLI-PIALLRSSTLLTLDLRDNKFFGRIPH---QINELSNLHFLLL 476 (487)
Q Consensus 431 ~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l 476 (487)
|.+++.. |..+..+++|+.|++++|++++..+. .+..+|+|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9998876 88888999999999999998765443 3455899998864
No 125
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.61 E-value=7.4e-14 Score=131.88 Aligned_cols=334 Identities=10% Similarity=0.076 Sum_probs=174.6
Q ss_pred ccccccccCCC-CCcEEEccCccccCCcccccccCCCCCcEEECCCCc---cCCCcchhccCCCCccEEeccCccccCCc
Q 036411 22 DSILPYLNTLT-SLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN---FEGHLPQCLNNLTHLKVLDISYNQLSGNF 97 (487)
Q Consensus 22 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 97 (487)
.+...+|..+. .|+.+.+.+. ++ .+...+|.+|.+|+.+.+..+. +......+|.+|.+|+.+.+..+ ++...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 34455677764 5888888765 32 3556778888888888886542 44444567888888888777554 44445
Q ss_pred cccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccC
Q 036411 98 PSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177 (487)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 177 (487)
...|..|.+|+.+.+.... .......+..+..|+.+.+. ..+..+...+|.. ..|+.+.+...........+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~--~~~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLP--DSVTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSEC 204 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECC--TTCCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTC
T ss_pred hhhhhhhccccccccccee--eeecccceeccccccccccc--ceeeEeccccccc-cceeEEEECCcccccccchhhhc
Confidence 5677788888888886431 12223445556666665552 2334444444433 34555555443333333334444
Q ss_pred CcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEE
Q 036411 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIY 257 (487)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 257 (487)
..++......... ...... ............... + ....+..
T Consensus 205 ~~l~~~~~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~-------~-----~~~~~~~ 246 (394)
T 4gt6_A 205 FALSTITSDSESY-------------------------PAIDNV-LYEKSANGDYALIRY-------P-----SQREDPA 246 (394)
T ss_dssp TTCCEEEECCSSS-------------------------CBSSSC-EEEECTTSCEEEEEC-------C-----TTCCCSE
T ss_pred cccceeccccccc-------------------------ccccce-eeccccccccccccc-------c-----cccccce
Confidence 4444443322211 110000 000000000000000 0 0011222
Q ss_pred EEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCc
Q 036411 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337 (487)
Q Consensus 258 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (487)
+.+... +......+|..+..|+.+.+.+... .++...|.++.+|+.+.+.. .+......+|..+.+|+.+.+.++
T Consensus 247 ~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 247 FKIPNG-VARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp EECCTT-EEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-
T ss_pred EEcCCc-ceEcccceeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-
Confidence 222211 1112334566677777777754432 45566677777777777753 333344456677777777777654
Q ss_pred ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 338 FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
+......+|.+|.+|+++.+..+ ++.....+|.+|++|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 44455667777778888887544 44456677888888888888776432 23456677777777765543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=5.3e-15 Score=124.55 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=73.5
Q ss_pred cEEEcCCCcccccccccccCCCcccEEEccCCccCCCchh-hhcccccccEEecCCccccCcchhhhccCcCCcEEeccC
Q 036411 329 SSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPH-WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407 (487)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 407 (487)
+.++++++.+. ..+..+. ..+++|++++|++.+..+. .++.+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666664 3333332 2566666666666544432 356666666666666666655555666666666666666
Q ss_pred Ccccccccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 408 NGLSVSMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 408 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
|+++..... +..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666433332 445566666666666666555555555566666666666654
No 127
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=2.2e-13 Score=128.70 Aligned_cols=333 Identities=12% Similarity=0.117 Sum_probs=199.2
Q ss_pred cccccccCCC-CCcEEECCCCccCCCcchhccCCCCccEEeccCcc---ccCCccccccCCCCCcEEeccccccCcchhH
Q 036411 48 RTKQGICNLK-NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQ---LSGNFPSVLTNLTSLEYLDLSFIDFQGTFLI 123 (487)
Q Consensus 48 ~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 123 (487)
+...+|.++. .|+.+.+..+ ++.....+|.+|++|+.+.+..+. ++.....+|..|.+|+.+.+..+
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-------- 124 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-------- 124 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--------
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--------
Confidence 3456788774 5888888764 544556778888888888886642 55455567777777777666432
Q ss_pred HHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCC
Q 036411 124 NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNT 203 (487)
Q Consensus 124 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 203 (487)
+..+...++..+..|+.+.+...........+..+..|+.+.+..+- . .+....+ ...
T Consensus 125 -------------------~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF-~~~ 182 (394)
T 4gt6_A 125 -------------------VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-T-AIEERAF-TGT 182 (394)
T ss_dssp -------------------CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTT-TTC
T ss_pred -------------------cceehhhhhhhhcccccccccceeeeecccceeccccccccccccee-e-Eeccccc-ccc
Confidence 23334444555555555555443333334455556666666664431 1 2333333 234
Q ss_pred CCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEe
Q 036411 204 GLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLD 283 (487)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 283 (487)
.|+.+.+...... . ....+..+..++.......... .....+........ ...........+..+.
T Consensus 183 ~l~~i~ip~~~~~-i-~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 248 (394)
T 4gt6_A 183 ALTQIHIPAKVTR-I-GTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGD-----------YALIRYPSQREDPAFK 248 (394)
T ss_dssp CCSEEEECTTCCE-E-CTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSC-----------EEEEECCTTCCCSEEE
T ss_pred ceeEEEECCcccc-c-ccchhhhccccceecccccccc-cccceeeccccccc-----------ccccccccccccceEE
Confidence 5666666543211 1 1113455666666665544322 11121111111000 0011112233444555
Q ss_pred cccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccC
Q 036411 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLS 363 (487)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 363 (487)
+.+ .+. .+....|.+|.+|+.+.+.+... .....+|..+++|+.+.+.. .+......+|.+|.+|+++.+..+ ++
T Consensus 249 ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 249 IPN-GVA-RIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp CCT-TEE-EECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred cCC-cce-EcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc
Confidence 543 233 56677899999999999976543 34556788999999999974 344466788999999999999865 55
Q ss_pred CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCccc
Q 036411 364 GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAI 433 (487)
Q Consensus 364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 433 (487)
.....+|.+|.+|+.+.+..+ ++......|.+|.+|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence 466778999999999999754 55466778999999999999998653 24566788999998876544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=1e-14 Score=120.11 Aligned_cols=130 Identities=23% Similarity=0.197 Sum_probs=68.8
Q ss_pred CccEEEcCCCccc-ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 327 HLSSLRLNNNHFS-GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 327 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
+|++|++++|.+. +..+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3344444444333 22233333444444444444444432 34444555555555555554334444445555666666
Q ss_pred cCCcccccc--ccccCCCcceEEEeeCcccCCcch---HhhhccCcceEEeCCCCccc
Q 036411 406 SENGLSVSM--VSLSNLSSVKHIYLHNNAINGLIP---IALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 406 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 458 (487)
++|.++... ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 665554332 455566667777777777666544 45666777777777777664
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.6e-15 Score=120.20 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=66.3
Q ss_pred CcccEEEccCCccC-CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCCCcceEEE
Q 036411 350 TLLDVLDVSNNKLS-GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNLSSVKHIY 427 (487)
Q Consensus 350 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~ 427 (487)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.. .+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555444 34444444555555555555554432 444455555555555555543 222333455566666
Q ss_pred eeCcccCCc-chHhhhccCcceEEeCCCCcccccCc---ccccccCceeEEecc
Q 036411 428 LHNNAINGL-IPIALLRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLLR 477 (487)
Q Consensus 428 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 477 (487)
+++|.+++. .+..+..+++|+.|++++|++++..+ ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666655543 12455566666666666666654443 356666666666654
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=1.1e-14 Score=117.35 Aligned_cols=128 Identities=22% Similarity=0.190 Sum_probs=67.5
Q ss_pred CCCcEEECCCCccC-CCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEe
Q 036411 302 LSLETLDLSNNNFY-GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380 (487)
Q Consensus 302 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 380 (487)
++|+.|++++|.+. +..+..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666654 34444455555666666665555433 4444455555555555555443444444444444444
Q ss_pred cCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcch---HhhhccCcceEEeCC
Q 036411 381 MSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIP---IALLRSSTLLTLDLR 453 (487)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 453 (487)
+++|.+++. + .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~-~---------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDL-S---------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSH-H---------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCCh-H---------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 444444421 1 11344455566666666666555444 456666667766665
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=5.4e-17 Score=159.45 Aligned_cols=196 Identities=18% Similarity=0.176 Sum_probs=138.5
Q ss_pred hccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCccc
Q 036411 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLD 353 (487)
Q Consensus 274 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (487)
..++.|+.|++++|.+. .+|..+ +.+++|+.|++++|......+. .+ ..+...+..+..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~------ll-----~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIIL------LM-----RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHH------HH-----HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHH------HH-----HhcccccCCHHHHHHHHhcc
Confidence 34566777777777776 666654 5667777777755431000000 00 00112223444555556666
Q ss_pred EEE-ccCCccCCCch-----hhhcc--cccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceE
Q 036411 354 VLD-VSNNKLSGDIP-----HWIGN--FSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKH 425 (487)
Q Consensus 354 ~L~-l~~~~~~~~~~-----~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~ 425 (487)
.|+ ++.+.+..... ..+.. ...|+.|++++|.+++ .|. +..+++|+.|++++|.++..+..+..+++|+.
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCE
T ss_pred cCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCE
Confidence 666 44433221000 01111 2368999999999985 565 89999999999999999988888999999999
Q ss_pred EEeeCcccCCcchHhhhccCcceEEeCCCCcccccC-cccccccCceeEEeccCCccCCCCC
Q 036411 426 IYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI-PHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 426 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
|++++|.+++. | .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|++.+.+|
T Consensus 491 L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 491 LQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred EECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999999974 5 7889999999999999998776 9999999999999999999998766
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=2.7e-14 Score=118.71 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=50.2
Q ss_pred CcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEe
Q 036411 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYL 428 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l 428 (487)
++|+.|++++|++.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..... +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3455555555555444444445555555555555555433333344444555555555544332222 234444444444
Q ss_pred eCcccCCcchHhhhccCcceEEeCCCCcc
Q 036411 429 HNNAINGLIPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 457 (487)
++|.+++..+..+..+++|+.|++++|++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 44444444333344444444444444444
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=5.5e-14 Score=118.20 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=73.5
Q ss_pred cEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCC
Q 036411 329 SSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408 (487)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 408 (487)
+.++++++.+. ..+..+ .+.|++|++++|.++ .+|..+..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45566666655 333322 245666666666665 44556666666666666666666555555666666666666666
Q ss_pred ccccccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 409 GLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 409 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
.++.... .+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6643332 3445666666666666666555555555666666666666653
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=5.4e-15 Score=149.93 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=91.9
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEE-----ecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCC
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITL-----DLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTH 327 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-----~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (487)
+.++.|++.++.+... +..+.....|+.+ ++..+.+. ++...|..+++|+.|++++|.+. .++..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 4577788877776532 2222122222222 22222222 34445667777888888877776 34445557777
Q ss_pred ccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccC
Q 036411 328 LSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407 (487)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 407 (487)
|+.|++++|.++ ..+..+..+++|+.|++++|.++ .+|..++.+++|++|++++|.+. .+|..|..+++|+.|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 777777777776 55666777777777777777776 55777777777777777777776 5566677777777777777
Q ss_pred Ccccccccc-ccCC-CcceEEEeeCcccCCcchHhhhccCcceEEeCCCC--------cccccCcccccccCceeEEecc
Q 036411 408 NGLSVSMVS-LSNL-SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN--------KFFGRIPHQINELSNLHFLLLR 477 (487)
Q Consensus 408 ~~~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~~l~~l~~L~~L~l~ 477 (487)
|.+...... +... ..+..+++++|.++...| ..|+.|+++.| .+....+..+.++..++...++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 777533222 2211 112235666777665544 34566666666 2223333344455555666666
Q ss_pred CCcc
Q 036411 478 GNSL 481 (487)
Q Consensus 478 ~~~~ 481 (487)
+|-+
T Consensus 400 ~Nil 403 (727)
T 4b8c_D 400 YNTL 403 (727)
T ss_dssp --CC
T ss_pred cccc
Confidence 6654
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=2.4e-14 Score=120.52 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCcEEECCCCccCCCCCc-CCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEec
Q 036411 303 SLETLDLSNNNFYGQLFP-NFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLM 381 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 381 (487)
++++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444444444332221 1333444444444444443333333334444444444444443333333344444444444
Q ss_pred CCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 382 SENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++|.+++..+..+..+++|+.|++++|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 44444433333344444444444444433
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.1e-14 Score=117.38 Aligned_cols=128 Identities=17% Similarity=0.128 Sum_probs=60.1
Q ss_pred CCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc-cCCCcceEEE
Q 036411 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL-SNLSSVKHIY 427 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~ 427 (487)
+.+|+.|++++|++.. ++......++|++|++++|.+.+. ..+..+++|+.|++++|.++..+..+ ..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3444444444444442 222222222455555555544422 34444555555555555554333222 4455555555
Q ss_pred eeCcccCCcch-HhhhccCcceEEeCCCCcccccCcc----cccccCceeEEeccCCc
Q 036411 428 LHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIPH----QINELSNLHFLLLRGNS 480 (487)
Q Consensus 428 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 480 (487)
+++|.++...+ ..+..+++|+.|++++|+++ .++. .+..+|+|+.|++++|+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555543322 14455555555555555554 2233 25555555555555554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=5.2e-16 Score=131.60 Aligned_cols=133 Identities=22% Similarity=0.241 Sum_probs=85.6
Q ss_pred cccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcce
Q 036411 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVK 424 (487)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~ 424 (487)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. ..|..+..+++|+.|++++|++...+ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 45556666666666666654 34 5666666777777766666 44555555667777777777665433 455667777
Q ss_pred EEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccCcc----------cccccCceeEEeccCCccCC
Q 036411 425 HIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIPH----------QINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 425 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~l~~~~~~~ 483 (487)
+|++++|.+++..+ ..+..+++|+.|++++|++.+..|. .+..+++|+.|+ ++++..
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 77777777775433 4566777777777777777554433 367778888776 666653
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.2e-13 Score=114.56 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=58.6
Q ss_pred hcCCCCCcEEECCCCccCCCCCcCCcCC-CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccc
Q 036411 298 FSSCLSLETLDLSNNNFYGQLFPNFMNL-THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVL 376 (487)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 376 (487)
|..+.+|+.|++++|.+... +.+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34566777777777766532 223333 3666666666666532 455555666666666666553333334555555
Q ss_pred cEEecCCccccCcchh--hhccCcCCcEEeccCCccc
Q 036411 377 WLLLMSENYLQGSIPV--QLGNLESLEFIDISENGLS 411 (487)
Q Consensus 377 ~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~ 411 (487)
++|++++|.+. ..+. .+..+++|+.|++++|++.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 55555555554 2332 3444455555555555443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.8e-14 Score=146.18 Aligned_cols=192 Identities=21% Similarity=0.255 Sum_probs=117.3
Q ss_pred cccCcEEecccccCCCCCchhhhcCCCCCcEEE-----CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLD-----LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
.+.++.|++.++.+. ..+...+. ...|..+. +..+.+. ..+..+..++.|+.|++++|.+. ..+..+..++
T Consensus 172 ~~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CCccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 356788888888776 44443322 12233222 2223332 34566788899999999999987 5555666889
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|.+...+..+..+++|+.|++++
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 9999999999998 78888999999999999999998 678889999999999999999987788888999999999999
Q ss_pred cccCCcchHhhhccC-cceEEeCCCCcccccCcccccccCceeEEeccCC
Q 036411 431 NAINGLIPIALLRSS-TLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
|.+++.++..+.... .+..+++++|.+++.+|. .|+.|++++|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 999988887775442 223478899988776665 4556666666
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=8.2e-13 Score=111.02 Aligned_cols=107 Identities=25% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+|++|++++|.+. .++..+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444444443 222334444444444444444443333344444444444444444444444444444444444444
Q ss_pred CccccCcchhhhccCcCCcEEeccCCcc
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
+|.++...+..|..+++|+.|++++|++
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4444433333344444555555554443
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=1.4e-12 Score=108.30 Aligned_cols=85 Identities=25% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+|+.|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444433333333334444444444444332222233334444444444444433333333334444444444
Q ss_pred Ccccc
Q 036411 383 ENYLQ 387 (487)
Q Consensus 383 ~~~~~ 387 (487)
+|.+.
T Consensus 109 ~N~l~ 113 (177)
T 2o6r_A 109 TNQLK 113 (177)
T ss_dssp SSCCS
T ss_pred CCcce
Confidence 44333
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.42 E-value=1.6e-11 Score=115.41 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=52.9
Q ss_pred hhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 271 YSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
.++..+..|+.+.+..+ +. .++...|.++.+|+.+.+..+ +......+|..+++|+.+.+.++.+......+|.+|.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 34445555555555443 32 444555555555555555432 2222333445555555555555444444445555555
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+|+++.+..+ ++.....+|.+|++|+.+.+.
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 5555555432 222334445555555555553
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=1.6e-13 Score=127.60 Aligned_cols=181 Identities=15% Similarity=0.108 Sum_probs=127.9
Q ss_pred CCCCcEEECCCCccCCCCCcCCc-----CCCCccEEEcCCCcccccccccc-cCCCcccEEEccCCccCCCchhhh----
Q 036411 301 CLSLETLDLSNNNFYGQLFPNFM-----NLTHLSSLRLNNNHFSGKMADGL-LSSTLLDVLDVSNNKLSGDIPHWI---- 370 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---- 370 (487)
.++|+.|++++|.+.......+. ..++|++|++++|.++......+ ..+.+|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999988643333322 23789999999999875444333 345689999999999875544444
Q ss_pred -cccccccEEecCCccccCc----chhhhccCcCCcEEeccCCcccc-----ccccccCCCcceEEEeeCcccCCcc---
Q 036411 371 -GNFSVLWLLLMSENYLQGS----IPVQLGNLESLEFIDISENGLSV-----SMVSLSNLSSVKHIYLHNNAINGLI--- 437 (487)
Q Consensus 371 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~--- 437 (487)
...++|++|++++|.++.. ....+..+++|+.|++++|.+.. ....+...++|++|++++|.++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999988643 23344678999999999999852 2445567789999999999998643
Q ss_pred -hHhhhccCcceEEeCCCCcccccCcccccccC--c---eeEEe--ccCCcc
Q 036411 438 -PIALLRSSTLLTLDLRDNKFFGRIPHQINELS--N---LHFLL--LRGNSL 481 (487)
Q Consensus 438 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~---L~~L~--l~~~~~ 481 (487)
..++..+++|+.|+|++|.+++.....+..+. . |+.+. +.++.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 34455679999999999999766555554432 2 67776 666654
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.37 E-value=5.8e-11 Score=111.54 Aligned_cols=304 Identities=11% Similarity=0.076 Sum_probs=176.9
Q ss_pred cccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCC
Q 036411 27 YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTS 106 (487)
Q Consensus 27 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 106 (487)
|+....+|+.+.+... ++ .+...+|.+|.+|+++++..+ +......+|.++ +|+.+.+..+ ++......|..+ +
T Consensus 41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 4555566777777654 22 244556777777777777654 433444556666 4666655432 332333445443 6
Q ss_pred CcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccc-------------cccccc
Q 036411 107 LEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-------------NVNSSF 173 (487)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------~~~~~~ 173 (487)
|+.+.+..+-. ......+..+ +++.+.+ ...+..+....+..+..++.+.+..... ......
T Consensus 115 L~~i~lp~~~~--~i~~~~F~~~-~l~~~~~--~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 115 LDDFEFPGATT--EIGNYIFYNS-SVKRIVI--PKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CSEEECCTTCC--EECTTTTTTC-CCCEEEE--CTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred cccccCCCccc--cccccccccc-eeeeeec--cceeeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 77777654311 1112233333 3444443 2344555555666666666665543321 111122
Q ss_pred cccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccC
Q 036411 174 LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ 253 (487)
Q Consensus 174 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 253 (487)
+..+..+..+.+..... ......+..+..++.+.+...- . ......+..+..|+.+.+..+ +. .+....+..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~ 263 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCT 263 (379)
T ss_dssp CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCT
T ss_pred cccccccccccccccee--EEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-cc-EeCccccceee
Confidence 33344555555543321 2333344567778887775442 1 122224466778888888654 32 34444455567
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
.|+.+.+... +......++.++++|+.+.+.++.+. .++...|.+|.+|+.+.+..+ +......+|..+.+|+.+.+
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 8888888654 43355567888999999999888787 788888999999999999754 44455667888999999988
Q ss_pred CCCcccccccccccCCCc
Q 036411 334 NNNHFSGKMADGLLSSTL 351 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~ 351 (487)
..+ +......+|.++..
T Consensus 341 p~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 341 PKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTT-CCEECTTTTTTSSC
T ss_pred CCc-cCEEchhHhhCCCC
Confidence 655 44455666766643
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=8.1e-15 Score=124.23 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=100.4
Q ss_pred CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhcc
Q 036411 365 DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRS 444 (487)
Q Consensus 365 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 444 (487)
.+|..+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+...+..+..+++|++|++++|.+++. + .+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-S-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC-C-ccccC
Confidence 344589999999999999999985 55 88899999999999999986666666789999999999999974 4 68888
Q ss_pred CcceEEeCCCCcccccCc-ccccccCceeEEeccCCccCCCCC
Q 036411 445 STLLTLDLRDNKFFGRIP-HQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
++|+.|++++|.++...+ ..+..+++|++|++++|++.+.+|
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 999999999999964332 478899999999999999865543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=2.5e-12 Score=105.63 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=76.6
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEee
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLH 429 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~ 429 (487)
+.+.++++++.++ .+|..+ .+++++|++++|.+++..+..|..+++|+.|++++|+++..... +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4577888888776 345443 26778888888888766677777778888888888877655444 3577778888888
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
+|.+++..+..+..+++|+.|+|++|++.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 777777766667777778888887777753
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=2.5e-13 Score=126.25 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=127.8
Q ss_pred cccCcEEecccccCCCCCchhhh-----cCCCCCcEEECCCCccCCCCCcCCc-CCCCccEEEcCCCcccccccccc---
Q 036411 276 MKELITLDLSRNNFSGELPRSIF-----SSCLSLETLDLSNNNFYGQLFPNFM-NLTHLSSLRLNNNHFSGKMADGL--- 346 (487)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~--- 346 (487)
.+.|+.|++++|.+. ......+ ..+++|++|++++|.+.+.....+. .+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 578999999999987 3332222 2347999999999988643333332 35789999999999875544443
Q ss_pred --cCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCcccc----
Q 036411 347 --LSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLSV---- 412 (487)
Q Consensus 347 --~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~---- 412 (487)
...+.|++|++++|.++.. ++..+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3467899999999998643 3445577899999999999887533 4456778899999999999852
Q ss_pred -ccccccCCCcceEEEeeCcccCCcchHhhhcc---C--cceEEe--CCCCccc
Q 036411 413 -SMVSLSNLSSVKHIYLHNNAINGLIPIALLRS---S--TLLTLD--LRDNKFF 458 (487)
Q Consensus 413 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~~~ 458 (487)
....+...++|++|++++|.++......+... . .|+.+. +..+.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23334467899999999999987655555433 2 167776 6666653
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=6.4e-12 Score=103.53 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=78.9
Q ss_pred ccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEeeC
Q 036411 352 LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLHN 430 (487)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 430 (487)
-+.++++++++. .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|+++..+.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888875 4555443 7888888888888866677788888888888888888665554 45778888888888
Q ss_pred cccCCcchHhhhccCcceEEeCCCCccc
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
|.++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888776666777888888888888875
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=1.5e-10 Score=95.04 Aligned_cols=85 Identities=26% Similarity=0.261 Sum_probs=36.5
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
++++.|++++|.+. .++...|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 34444444444444 33333344444444444444444433333334444444444444444433333344444444444
Q ss_pred ccCCcc
Q 036411 357 VSNNKL 362 (487)
Q Consensus 357 l~~~~~ 362 (487)
+++|++
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 444443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=2.4e-10 Score=94.03 Aligned_cols=104 Identities=20% Similarity=0.297 Sum_probs=64.7
Q ss_pred cEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
+.++++++.+. .+|..+ +++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|..+++|+.|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 45666666554 445443 256667777777666555556666667777777777666 5666656666667777776
Q ss_pred CCccCCCCCcCCcCCCCccEEEcCCCccc
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
+|.+.+..+..+..+++|+.|++.+|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666544444556666666666666554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=2.6e-10 Score=104.99 Aligned_cols=200 Identities=11% Similarity=0.128 Sum_probs=99.9
Q ss_pred cccCcEEecccccCCC-CCc------hhhhcCCCCCcEEECCCCccCC---------CCCcCCcCCCCccEEEcCCCccc
Q 036411 276 MKELITLDLSRNNFSG-ELP------RSIFSSCLSLETLDLSNNNFYG---------QLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 276 ~~~L~~L~l~~~~~~~-~~~------~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
.+.++.|.+..+...+ ... ......+++|+.|.+.+....+ .....+..+|+|++|.+.++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4567888887665431 210 0112346789999886542211 11122345677777777766211
Q ss_pred ccccccccCCCcccEEEccCCccCCCchhhhc--ccccccEEecCCc--cccCc-----chhhh--ccCcCCcEEeccCC
Q 036411 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG--NFSVLWLLLMSEN--YLQGS-----IPVQL--GNLESLEFIDISEN 408 (487)
Q Consensus 340 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~l~l~~~ 408 (487)
..+. + ..++|+.|++..|.+.......+. .+|+|++|+++.+ ...+. +...+ ..+|+|+.|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 1111 2 256777777777766533333333 5677777776421 11000 01111 23567777777666
Q ss_pred ccccc-cccc---cCCCcceEEEeeCcccCCcchH----hhhccCcceEEeCCCCcccccCcccccc-cCceeEEeccCC
Q 036411 409 GLSVS-MVSL---SNLSSVKHIYLHNNAINGLIPI----ALLRSSTLLTLDLRDNKFFGRIPHQINE-LSNLHFLLLRGN 479 (487)
Q Consensus 409 ~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~ 479 (487)
.+... ...+ ..+|+|+.|+++.|.+.+.... .+..+++|+.|++++|.+++.....+.. + ...++++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 65311 1111 2456677777766666543222 2234566777777766654333223332 2 234555554
Q ss_pred c
Q 036411 480 S 480 (487)
Q Consensus 480 ~ 480 (487)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 3
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=1.4e-09 Score=100.77 Aligned_cols=103 Identities=21% Similarity=0.194 Sum_probs=80.7
Q ss_pred cEEEccCC-ccCCCchhhhcccccccEEecCC-ccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEee
Q 036411 353 DVLDVSNN-KLSGDIPHWIGNFSVLWLLLMSE-NYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLH 429 (487)
Q Consensus 353 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~ 429 (487)
..++.+++ .++ .+|. +..+++|++|++++ |.+....+..|..+++|+.|+|++|.++.... .|..+++|++|+++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677777 776 4677 88888899999986 88886666778888888889888888865544 45688888888888
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+|+++...+..+..++ |+.|+|.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888877666666555 888888888875
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=5.3e-09 Score=96.26 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=97.5
Q ss_pred hhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccccccc--CCCcccEEEccCC--ccC-C----Cch
Q 036411 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNN--KLS-G----DIP 367 (487)
Q Consensus 297 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~-~----~~~ 367 (487)
++..+|+|+.|++.+|.-... ..+ .+++|++|.+..|.+.......+. .+++|+.|+++.+ ... . .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 346677888888877631111 123 367888888887776544433333 5788888887531 111 1 111
Q ss_pred hhh--cccccccEEecCCccccCcchhhh---ccCcCCcEEeccCCcccc-----ccccccCCCcceEEEeeCcccCCcc
Q 036411 368 HWI--GNFSVLWLLLMSENYLQGSIPVQL---GNLESLEFIDISENGLSV-----SMVSLSNLSSVKHIYLHNNAINGLI 437 (487)
Q Consensus 368 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~ 437 (487)
..+ ..+++|++|++.+|.+.+.....+ ..+++|+.|+++.|.+.. ....+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 122 247889999998887764333333 357889999999988753 2333356789999999999887655
Q ss_pred hHhhhccCcceEEeCCCCc
Q 036411 438 PIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 438 ~~~~~~~~~L~~L~l~~~~ 456 (487)
..++...- ...+++++++
T Consensus 324 ~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHc-CCEEEecCCc
Confidence 55555311 3568888776
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=6.1e-09 Score=96.43 Aligned_cols=103 Identities=20% Similarity=0.118 Sum_probs=71.3
Q ss_pred EEECCCC-ccCCCCCcCCcCCCCccEEEcCC-CcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCC
Q 036411 306 TLDLSNN-NFYGQLFPNFMNLTHLSSLRLNN-NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 306 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 383 (487)
.++.+++ .+.+ ++. +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|++++..+..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 5654 444 77777788888875 777766666777777788888888777766677777777777777777
Q ss_pred ccccCcchhhhccCcCCcEEeccCCccc
Q 036411 384 NYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
|.+....+..+..++ |+.|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777754444454444 777777777664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=9.9e-09 Score=85.22 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=67.2
Q ss_pred cccccCCCcccEEEccCC-ccCCC----chhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCcccc-
Q 036411 343 ADGLLSSTLLDVLDVSNN-KLSGD----IPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLSV- 412 (487)
Q Consensus 343 ~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~- 412 (487)
...+...+.|++|++++| .+... +...+...++|++|++++|.+.+.. ...+...++|+.|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345556777888888887 66532 2334455677777777777765422 2234445667777777776632
Q ss_pred ----ccccccCCCcceEEEe--eCcccCCcc----hHhhhccCcceEEeCCCCcc
Q 036411 413 ----SMVSLSNLSSVKHIYL--HNNAINGLI----PIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 413 ----~~~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 457 (487)
....+...+.|++|++ ++|.+.... ..++...++|+.|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2344445556666666 556665432 23344456666666666665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=5.7e-08 Score=80.57 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=57.5
Q ss_pred hhhhcccccccEEecCCc-cccCc----chhhhccCcCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCc
Q 036411 367 PHWIGNFSVLWLLLMSEN-YLQGS----IPVQLGNLESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 367 ~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
...+..++.|++|++++| .+... +...+...++|++|++++|.+. .....+...+.|++|++++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334445566666666665 55432 1222344556666666666552 1222233445566666666665542
Q ss_pred c----hHhhhccCcceEEeC--CCCccccc----CcccccccCceeEEeccCCcc
Q 036411 437 I----PIALLRSSTLLTLDL--RDNKFFGR----IPHQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 437 ~----~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 481 (487)
. ..++...++|+.|+| ++|.+++. +.+.+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 233444455666666 55655432 223444445666666666654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=8.8e-08 Score=77.15 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=15.6
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCc
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 91 (487)
+|++||+++|.+++.....+.+|++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444433333444444444444444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=5.6e-07 Score=72.48 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred CCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhc----cccceEEEeccCCCccccccccccCC
Q 036411 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLAN----HSKLEVLVLSSGNDMLQVKTENWLPT 154 (487)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~l~l~~~~~~~~~~~~~~~~~ 154 (487)
.-.+|++|++++|.+++..-..+..|++|++|++++|......-...++. +++|++|++++|..+++.....+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34679999999999887777778899999999999996333334444554 35788888888877776655555555
Q ss_pred CCCceeeccccc
Q 036411 155 YPLKVLQLSHCH 166 (487)
Q Consensus 155 ~~L~~L~l~~~~ 166 (487)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 555555555553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=5.1e-07 Score=78.62 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=71.1
Q ss_pred hcccccccE--EecCCcccc---CcchhhhccCcCCcEEeccCCcccccc---ccccCCCcceEEEeeCcccCCcchHhh
Q 036411 370 IGNFSVLWL--LLMSENYLQ---GSIPVQLGNLESLEFIDISENGLSVSM---VSLSNLSSVKHIYLHNNAINGLIPIAL 441 (487)
Q Consensus 370 ~~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~ 441 (487)
+...+.|+. ++++.|... ..+.....++++|+.|+|++|++.... ..+..+++|+.|++++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 334455555 555666332 111222356889999999999986432 3344789999999999999875 223
Q ss_pred hccC--cceEEeCCCCcccccCc-------ccccccCceeEEe
Q 036411 442 LRSS--TLLTLDLRDNKFFGRIP-------HQINELSNLHFLL 475 (487)
Q Consensus 442 ~~~~--~L~~L~l~~~~~~~~~~-------~~l~~l~~L~~L~ 475 (487)
..++ +|+.|+|++|++.+..| ..+..+|+|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3334 89999999999876554 3577899999876
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=2.5e-06 Score=74.25 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=74.1
Q ss_pred cccccccccE--EecCCcccc---ccccccccCCCCCcEEEccCccccCCcc-cccccCCCCCcEEECCCCccCCCcchh
Q 036411 3 SFGSLKQLKI--LNLGFNFFI---DSILPYLNTLTSLTTLNLRYNKIEGSRT-KQGICNLKNLLELDLSSNNFEGHLPQC 76 (487)
Q Consensus 3 ~~~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 76 (487)
.|...+.|+. +++..|... .........+++|++|++++|.+.+... +..+..+++|+.|+|++|.+.+. ..
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 3455555655 566655321 1111222568999999999999975432 34567899999999999999754 23
Q ss_pred ccCCC--CccEEeccCccccCCcc-------ccccCCCCCcEEecc
Q 036411 77 LNNLT--HLKVLDISYNQLSGNFP-------SVLTNLTSLEYLDLS 113 (487)
Q Consensus 77 ~~~l~--~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~ 113 (487)
+..+. +|++|++.+|.+....| ..+..+++|+.|+-.
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 44444 99999999998874333 346778999988764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=4.4e-05 Score=62.70 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=66.0
Q ss_pred ccccCCCcccEEEccCC-ccCC----CchhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCccc---
Q 036411 344 DGLLSSTLLDVLDVSNN-KLSG----DIPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLS--- 411 (487)
Q Consensus 344 ~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~--- 411 (487)
......+.|++|+++++ ++.. .+...+...+.|+.|++++|.+.+.. .+.+...++|+.|+|+.|.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455677888888875 6543 23445556677788888777775422 233445567777777777663
Q ss_pred --cccccccCCCcceEEEeeCc---ccCCc----chHhhhccCcceEEeCCCCcc
Q 036411 412 --VSMVSLSNLSSVKHIYLHNN---AINGL----IPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 412 --~~~~~~~~~~~L~~L~l~~~---~~~~~----~~~~~~~~~~L~~L~l~~~~~ 457 (487)
.....+..-+.|++|+++++ .+... +..++..-++|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23333444455777777654 22321 233445556677777665554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=0.00025 Score=58.15 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=16.6
Q ss_pred CCcccEEEccCCccCC----CchhhhcccccccEEecCCcccc
Q 036411 349 STLLDVLDVSNNKLSG----DIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
.+.|+.|++++|++.+ .+...+...+.|++|+++.|.+.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3444444444444432 22223333444444444444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0011 Score=50.81 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=38.9
Q ss_pred EEeccCCccc--cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 402 FIDISENGLS--VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 402 ~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
.++.++.+++ ..+..+. ++|+.|++++|.++.+.+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777765 4444332 46788888888888777777777788888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.36 E-value=0.0056 Score=46.73 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=38.7
Q ss_pred EEecCCcccc-CcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCC
Q 036411 378 LLLMSENYLQ-GSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 378 ~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 435 (487)
.++.++..++ ..+|..+. ++|+.|+|++|.++.... .|..+++|+.|++.+|.+.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5677777664 23444433 468889999998865544 44578889999998887763
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.22 E-value=0.65 Score=33.12 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=19.3
Q ss_pred cccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC
Q 036411 50 KQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90 (487)
Q Consensus 50 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (487)
..+|.+|.+|+++.|..+ ++.....+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555543 2223334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.34 E-value=1.8 Score=30.75 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=37.3
Q ss_pred ccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCC
Q 036411 18 NFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67 (487)
Q Consensus 18 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 67 (487)
..+..+...+|..|.+|+.+.|..+-- .+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v~--~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNIG--LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTSS--CCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCchh--eEcHHHHhccCCccEEEEcCC
Confidence 345666677899999999999987632 356678999999999998764
Done!