BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036413
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
           Containing Protein 7
          Length = 153

 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 10/152 (6%)

Query: 105 GSEEPSDXXXXXXXLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTL 164
           GS   S        LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    L
Sbjct: 1   GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCL 60

Query: 165 NRDTWADEAVSQTIRASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITG 224
           NRD W++EAV   IR  +FIFWQVY          E ++   +YKL   P V ++DP TG
Sbjct: 61  NRDVWSNEAVKNIIR-EHFIFWQVY------HDSEEGQRYIQFYKLGDFPYVSILDPRTG 113

Query: 225 EKMRKWCGMVDPVSLLEDLLSFMESGPRDQLE 256
           +K+ +W   +D  S L+ +  F+  G   QL+
Sbjct: 114 QKLVEW-HQLDVSSFLDQVTGFL--GEHGQLD 142


>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
           Maltotetraose
 pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
           Maltotetraose
 pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
           Isopanose
 pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
           Isopanose
          Length = 588

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 76  VKDTLCY--YPQYYQQKNPEVWESEDNSEVWGSEEPS 110
           VKDT+ Y  +P+ +   NP +  S + S  WGSE+P+
Sbjct: 132 VKDTVWYQIFPERFANGNPSI--SPEGSRPWGSEDPT 166


>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
           Neopullulanase
 pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
           Neopullulanase
 pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
 pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
          Length = 588

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 76  VKDTLCY--YPQYYQQKNPEVWESEDNSEVWGSEEPS 110
           VKDT+ Y  +P+ +   NP +  S + S  WGSE+P+
Sbjct: 132 VKDTVWYQIFPERFANGNPSI--SPEGSRPWGSEDPT 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,948,791
Number of Sequences: 62578
Number of extensions: 378829
Number of successful extensions: 664
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 4
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)