BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036413
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2
Length = 467
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 129/258 (50%), Gaps = 39/258 (15%)
Query: 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEV------D 64
K +I F IT G +E +L A N NL+ A+ F + +E
Sbjct: 14 KGLIQQFTAIT-GASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTVRPH 72
Query: 65 IEDEVRPPLPVVKDTLCYYPQYYQQKNPEVWESEDNSEVWGSEEPSDNKNNN------NN 118
E+EVR P+P ++ L PE ++G + + +N
Sbjct: 73 TEEEVRAPIPQKQEILV---------EPE--------PLFGVRQEQELRNGGAIDKKLTT 115
Query: 119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
LA L+RPP+DLM GSFE AK+ G +NKWL++N+Q+ ++F LNRD W++EAV I
Sbjct: 116 LADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 175
Query: 179 RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
R +FIFWQVY D + E ++ +YKL P V ++DP TG+K+ +W +D S
Sbjct: 176 R-EHFIFWQVYHDSE------EGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSS 227
Query: 239 LLEDLLSFM-ESGPRDQL 255
L+ + F+ E G D L
Sbjct: 228 FLDQVTGFLGEHGQLDGL 245
>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2
Length = 489
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 27/263 (10%)
Query: 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEV------D 64
K +I F IT G +E +L A N NL+ A+ F + +E
Sbjct: 14 KGLIQQFTTIT-GASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTVRPH 72
Query: 65 IEDEVRPPLPVVKDTLCYYPQYY---QQKNP--EVWESEDNSEVWGSEEPSDNKNNN--- 116
E+EVR P+P ++ L + +++ P +++ + + + + +N
Sbjct: 73 TEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAID 132
Query: 117 ---NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEA 173
LA L+RPP+DLM GSFE AK+ G +NKWL++N+Q+ ++F LNRD W++EA
Sbjct: 133 KKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEA 192
Query: 174 VSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM 233
V IR +FIFWQVY D + E ++ +YKL P V ++DP TG+K+ +W
Sbjct: 193 VKNIIR-EHFIFWQVYHDSE------EGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQ 244
Query: 234 VDPVSLLEDLLSFM-ESGPRDQL 255
+D S L+ + F+ E G D L
Sbjct: 245 LDVSSFLDQVTGFLGEHGQLDGL 267
>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2
Length = 489
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 27/263 (10%)
Query: 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEV------D 64
K +I F IT G +E +L A N NL+ A+ F + +E
Sbjct: 14 KGLIQQFTTIT-GASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTVRPH 72
Query: 65 IEDEVRPPLPVVKDTLCYYPQYY---QQKNP--EVWESEDNSEVWGSEEPSDNKNNN--- 116
E+EVR P+P ++ L + +++ P +++ + + + + +N
Sbjct: 73 TEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAID 132
Query: 117 ---NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEA 173
LA L+RPP+DLM GSFE AK+ G +NKWL++N+Q+ ++F LNRD W++EA
Sbjct: 133 KKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEA 192
Query: 174 VSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM 233
V IR +FIFWQVY D + E ++ +YKL P V ++DP TG+K+ +W
Sbjct: 193 VKNIIR-EHFIFWQVYHDSE------EGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQ 244
Query: 234 VDPVSLLEDLLSFM-ESGPRDQL 255
+D S L+ + F+ E G D L
Sbjct: 245 LDVSSFLDQVTGFLGEHGQLDGL 267
>sp|Q55BU7|UBXN7_DICDI UBX domain-containing protein 7 homolog OS=Dictyostelium discoideum
GN=ubxd7 PE=4 SV=1
Length = 503
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 33/261 (12%)
Query: 13 VISSFLEITNGQTEETALKILNATNWNLDKAILRF--NNNSNNID--------------- 55
++S+FL IT A IL NW++++++ F N+ +N+
Sbjct: 6 ILSNFLSITGCDDSSLATTILENNNWDVERSVDFFFTMNDPSNVKPTTSSKKTSSPPTAS 65
Query: 56 EDEYEVEVDI-EDEVRPPLPVVKDTLCYYPQYYQ------QKNPEVWESEDNSEVWGSEE 108
E D EDE R P+P D L YYQ QK V+E+ + E
Sbjct: 66 SSSASSEFDYNEDEFRDPIPQKMDKLV--DHYYQPTQRSYQKQTNVFEAFRDFEKERGIN 123
Query: 109 PSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDT 168
+L+ L++PP+D++ G+F++ K + + ++LVN+Q +EF LNRDT
Sbjct: 124 QDKATEKQKSLSELFKPPLDILTFGTFDEIKKMAEQKKYFVLVNIQDVQEFDCQKLNRDT 183
Query: 169 WADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR 228
W+++ + + I NF+FWQV + + E + Y + P + +IDP TG+K++
Sbjct: 184 WSNKDLKELI-GENFVFWQV------NSANPEGKWFTQIYPVFKFPYIAIIDPRTGQKLQ 236
Query: 229 KWCGMVDPVSLLEDLLSFMES 249
G +D + + L++F+ +
Sbjct: 237 DMTGFIDAEEMAQYLVTFLST 257
>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1
Length = 427
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 117 NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQ 176
+ LA L+RPP D++ N S ++A+ S + +W+LVNLQ+ F LNRD W DE+V +
Sbjct: 143 SRLAKLFRPPYDIISNLSLDEARIEASSQKRWILVNLQTSTSFECQVLNRDLWKDESVKE 202
Query: 177 TIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDP 236
IRA +F+F Q+ DD++ E ++ +Y + S P + ++DP TGE++++W P
Sbjct: 203 VIRA-HFLFLQLL---DDEEPGMEFKR---FYPVRSTPHIAILDPRTGERVKEWSKSFTP 255
Query: 237 VSLLEDLLSFMESGPRDQ 254
+ L F+E D+
Sbjct: 256 ADFVIALNDFLEGCTLDE 273
>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1
Length = 500
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 11/135 (8%)
Query: 119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
LA L+RPP +M + AK + KW+++N+Q F LNRD W+ V +TI
Sbjct: 208 LALLFRPPFSIMSKLDLDAAKQKARAKQKWIMINIQDSGIFQCQALNRDLWSSRPV-KTI 266
Query: 179 RASNFIFWQVYDDDDDDDDDSECRKVCGYYKL---DSLPVVLVIDPITGEKMRKWCGMVD 235
NF+F Q + + + +Y L D LP + ++DPITGE++++W +V
Sbjct: 267 IKENFVFLQYQYESRN------AQPYLQFYHLNNKDDLPHIAILDPITGERVKQWNRVVP 320
Query: 236 -PVSLLEDLLSFMES 249
P + ++ F+ S
Sbjct: 321 IPEQFISEINEFLAS 335
>sp|Q95N78|PPARA_CANFA Peroxisome proliferator-activated receptor alpha OS=Canis
familiaris GN=PPARA PE=2 SV=1
Length = 468
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 246 FMESGPRDQLERATKTQLPPYPPVHEQMPAYPAVPEEPLQVARNLVCRI----------G 295
++ SGP T T P P PA P EEP VA N+ CRI G
Sbjct: 56 YLGSGPGSDGSVITDTLSPAPSPSSVTHPAAPGGAEEPSSVALNIECRICGDRASGYHYG 115
Query: 296 VRLPDGQEANQTRQFRL 312
V +G + R RL
Sbjct: 116 VHACEGCKGFFRRTIRL 132
>sp|A8GT47|RS13_RICRS 30S ribosomal protein S13 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rpsM PE=3 SV=1
Length = 125
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS----NNIDEDEYEVEVDIE 66
KRV+ S I G A +I N + DK + + NI E EY+VE D+
Sbjct: 13 KRVVVSLTYIY-GLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLR 71
Query: 67 DEVRPPLPVVKDTLCYYPQYYQQKNP 92
EV + KD CY + +K P
Sbjct: 72 REVTLNIKKKKDIRCYQGLRHIRKLP 97
>sp|B0BUN8|RS13_RICRO 30S ribosomal protein S13 OS=Rickettsia rickettsii (strain Iowa)
GN=rpsM PE=3 SV=1
Length = 125
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS----NNIDEDEYEVEVDIE 66
KRV+ S I G A +I N + DK + + NI E EY+VE D+
Sbjct: 13 KRVVVSLTYIY-GLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLR 71
Query: 67 DEVRPPLPVVKDTLCYYPQYYQQKNP 92
EV + KD CY + +K P
Sbjct: 72 REVTLNIKKKKDIRCYQGLRHIRKLP 97
>sp|Q9ZCS7|RS13_RICPR 30S ribosomal protein S13 OS=Rickettsia prowazekii (strain Madrid
E) GN=rpsM PE=3 SV=1
Length = 125
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS----NNIDEDEYEVEVDIE 66
KR++ S I G A +I N + DK + + NI E+EY+VE D++
Sbjct: 13 KRLVVSLTYIY-GLGSTMAAEICNKAKISKDKKVKVLTDQELISLRNIIENEYKVEGDLK 71
Query: 67 DEVRPPLPVVKDTLCYYPQYYQQKNP 92
EV + KD CY + +K P
Sbjct: 72 REVTLNIKKKKDIRCYQGLRHIRKLP 97
>sp|Q7Y175|UBAX1_ARATH UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis
thaliana GN=At4g15410 PE=2 SV=1
Length = 421
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 13 VISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50
+I+SF+EIT+ EE L + WNLD A+ F +N
Sbjct: 9 LINSFIEITSSSREEANF-FLESHTWNLDAAVSTFLDN 45
>sp|Q32KW2|UBXN1_BOVIN UBX domain-containing protein 1 OS=Bos taurus GN=UBXN1 PE=2 SV=1
Length = 297
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 252 RDQLERATK----TQLPPYPPVHEQMPAYPAVPEEPLQVARNLVCRIGVRLPDGQEANQT 307
RD+ ERA K P PP E P + EP CRI VRLPDG QT
Sbjct: 170 RDKAERAKKYGGNVGSQPSPPATEPGPVPSSPSREPPTKREYDQCRIQVRLPDGTSLTQT 229
Query: 308 RQFR 311
+ R
Sbjct: 230 FRAR 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,988,608
Number of Sequences: 539616
Number of extensions: 6856879
Number of successful extensions: 30325
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 29628
Number of HSP's gapped (non-prelim): 726
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)