Query 036413
Match_columns 346
No_of_seqs 261 out of 575
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1364 Predicted ubiquitin re 100.0 2.2E-42 4.8E-47 328.8 18.8 283 8-346 4-356 (356)
2 smart00594 UAS UAS domain. 99.9 7.8E-28 1.7E-32 202.5 10.5 115 122-243 2-121 (122)
3 cd02991 UAS_ETEA UAS family, E 99.9 2.3E-27 4.9E-32 198.5 12.9 114 130-250 1-116 (116)
4 cd02958 UAS UAS family; UAS is 99.9 1.7E-26 3.8E-31 191.4 12.2 113 130-249 1-113 (114)
5 cd02990 UAS_FAF1 UAS family, F 99.9 2.7E-25 5.9E-30 190.1 12.5 114 130-250 1-136 (136)
6 KOG1363 Predicted regulator of 99.7 1.1E-17 2.4E-22 168.4 5.9 222 114-345 146-459 (460)
7 PF13899 Thioredoxin_7: Thiore 99.5 3.2E-14 7E-19 111.1 7.1 80 132-221 3-82 (82)
8 KOG2507 Ubiquitin regulatory p 99.5 1E-12 2.2E-17 128.6 15.7 110 129-247 2-111 (506)
9 cd01770 p47_UBX p47-like ubiqu 99.5 8.3E-14 1.8E-18 108.9 6.6 54 289-345 2-78 (79)
10 cd02955 SSP411 TRX domain, SSP 99.4 7.5E-12 1.6E-16 106.0 11.1 90 136-232 5-99 (124)
11 cd02960 AGR Anterior Gradient 99.4 1.7E-12 3.7E-17 110.5 7.2 91 131-232 8-98 (130)
12 PF14555 UBA_4: UBA-like domai 99.3 1.2E-12 2.6E-17 90.6 4.6 42 11-53 1-42 (43)
13 cd02951 SoxW SoxW family; SoxW 99.3 2.5E-11 5.3E-16 101.6 10.9 115 134-249 1-121 (125)
14 cd01767 UBX UBX (ubiquitin reg 99.2 2.5E-11 5.5E-16 94.1 6.2 54 290-345 1-76 (77)
15 cd01774 Faf1_like2_UBX Faf1 ik 99.2 4E-11 8.6E-16 95.1 6.3 56 289-346 2-84 (85)
16 KOG2086 Protein tyrosine phosp 99.2 4.7E-11 1E-15 116.5 6.8 43 9-52 3-45 (380)
17 cd02953 DsbDgamma DsbD gamma f 99.1 2.8E-10 6E-15 92.1 8.3 102 137-243 2-103 (104)
18 cd01773 Faf1_like1_UBX Faf1 ik 99.0 8.3E-10 1.8E-14 86.7 6.7 56 288-345 2-79 (82)
19 smart00166 UBX Domain present 99.0 9.2E-10 2E-14 85.9 6.3 55 289-345 2-80 (80)
20 cd01771 Faf1_UBX Faf1 UBX doma 99.0 1.3E-09 2.9E-14 85.4 6.4 54 289-344 2-77 (80)
21 PF03190 Thioredox_DsbH: Prote 98.9 2.9E-09 6.2E-14 94.0 8.3 88 135-229 26-118 (163)
22 PF13098 Thioredoxin_2: Thiore 98.9 9.8E-10 2.1E-14 89.6 3.8 94 142-243 1-112 (112)
23 PF00789 UBX: UBX domain; Int 98.9 2.8E-09 6E-14 83.3 6.0 56 288-345 3-82 (82)
24 PRK00293 dipZ thiol:disulfide 98.8 1.2E-08 2.5E-13 106.8 10.1 107 133-246 461-569 (571)
25 cd01772 SAKS1_UBX SAKS1-like U 98.8 7.3E-09 1.6E-13 80.9 5.7 53 290-344 3-77 (79)
26 cd02959 ERp19 Endoplasmic reti 98.8 7.2E-09 1.6E-13 86.7 4.6 103 134-248 7-114 (117)
27 COG2143 Thioredoxin-related pr 98.7 1.6E-07 3.4E-12 81.8 9.9 110 132-244 28-146 (182)
28 cd02950 TxlA TRX-like protein 98.6 3.7E-07 8.1E-12 78.8 10.7 101 140-251 14-114 (142)
29 cd02985 TRX_CDSP32 TRX family, 98.4 2.8E-06 6E-11 69.0 10.8 96 134-245 5-101 (103)
30 cd02956 ybbN ybbN protein fami 98.3 4.8E-06 1E-10 65.9 9.8 94 134-243 2-95 (96)
31 KOG0910 Thioredoxin-like prote 98.3 8E-06 1.7E-10 71.0 10.5 107 128-248 43-149 (150)
32 COG4232 Thiol:disulfide interc 98.3 3.2E-06 6.8E-11 87.2 8.8 102 138-246 464-567 (569)
33 cd02949 TRX_NTR TRX domain, no 98.2 2E-05 4.2E-10 63.0 10.5 96 133-243 1-96 (97)
34 PF00085 Thioredoxin: Thioredo 98.1 3E-05 6.6E-10 61.2 10.1 97 132-245 6-102 (103)
35 PRK10996 thioredoxin 2; Provis 98.1 3E-05 6.6E-10 66.5 10.4 91 142-246 48-138 (139)
36 cd02997 PDI_a_PDIR PDIa family 98.1 2.5E-05 5.5E-10 62.1 8.7 94 133-241 8-102 (104)
37 cd02963 TRX_DnaJ TRX domain, D 98.0 3.5E-05 7.5E-10 63.4 9.4 100 131-243 7-108 (111)
38 cd02993 PDI_a_APS_reductase PD 98.0 2.4E-05 5.1E-10 64.0 8.3 97 133-241 9-107 (109)
39 cd02984 TRX_PICOT TRX domain, 98.0 4.3E-05 9.4E-10 60.3 9.0 93 134-243 4-96 (97)
40 COG1331 Highly conserved prote 98.0 1.5E-05 3.3E-10 83.6 7.5 85 136-227 33-122 (667)
41 TIGR00385 dsbE periplasmic pro 98.0 5E-05 1.1E-09 67.3 9.8 94 143-248 60-172 (173)
42 cd03002 PDI_a_MPD1_like PDI fa 97.9 6.7E-05 1.5E-09 60.5 8.7 98 131-241 6-106 (109)
43 cd03006 PDI_a_EFP1_N PDIa fami 97.9 8E-05 1.7E-09 62.0 9.0 97 130-241 14-111 (113)
44 cd02961 PDI_a_family Protein D 97.8 8.2E-05 1.8E-09 57.8 8.0 91 138-241 7-99 (101)
45 KOG0907 Thioredoxin [Posttrans 97.8 0.00019 4E-09 59.2 9.9 93 132-241 7-100 (106)
46 cd02947 TRX_family TRX family; 97.8 0.0002 4.4E-09 54.3 9.4 89 135-243 3-92 (93)
47 PHA02278 thioredoxin-like prot 97.8 0.00019 4.2E-09 58.7 9.7 85 144-240 12-98 (103)
48 PLN00410 U5 snRNP protein, DIM 97.8 0.00019 4E-09 62.3 9.9 102 132-250 11-123 (142)
49 TIGR01126 pdi_dom protein disu 97.8 0.00021 4.5E-09 56.4 9.5 94 134-245 5-100 (102)
50 TIGR01068 thioredoxin thioredo 97.8 0.0003 6.5E-09 55.2 10.4 88 144-245 12-99 (101)
51 PRK09381 trxA thioredoxin; Pro 97.8 0.00031 6.7E-09 56.9 10.6 96 134-246 12-107 (109)
52 cd02948 TRX_NDPK TRX domain, T 97.8 0.00035 7.6E-09 56.4 10.6 88 142-244 13-100 (102)
53 cd03000 PDI_a_TMX3 PDIa family 97.8 0.00019 4E-09 57.9 8.8 96 134-244 4-101 (104)
54 cd03011 TlpA_like_ScsD_MtbDsbE 97.7 7.4E-05 1.6E-09 61.5 6.0 91 142-243 16-122 (123)
55 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00024 5.2E-09 57.6 8.5 93 132-241 8-106 (108)
56 cd03004 PDI_a_ERdj5_C PDIa fam 97.7 0.00022 4.8E-09 57.2 8.1 94 132-241 8-102 (104)
57 cd02999 PDI_a_ERp44_like PDIa 97.6 0.00018 3.9E-09 58.2 7.0 85 142-241 14-98 (100)
58 PRK15412 thiol:disulfide inter 97.6 0.00046 1E-08 61.9 10.2 93 144-249 66-178 (185)
59 cd03003 PDI_a_ERdj5_N PDIa fam 97.6 0.00034 7.5E-09 55.9 8.1 90 133-240 9-98 (101)
60 TIGR02740 TraF-like TraF-like 97.6 0.00069 1.5E-08 64.8 11.5 117 126-248 140-265 (271)
61 PTZ00051 thioredoxin; Provisio 97.6 0.00057 1.2E-08 54.0 9.0 85 137-238 9-94 (98)
62 cd02994 PDI_a_TMX PDIa family, 97.5 0.00064 1.4E-08 54.2 9.1 92 132-243 8-99 (101)
63 cd02986 DLP Dim1 family, Dim1- 97.5 0.00073 1.6E-08 56.4 9.3 96 133-246 3-110 (114)
64 KOG2689 Predicted ubiquitin re 97.5 0.00014 3.1E-09 68.5 5.5 53 290-343 209-283 (290)
65 cd02995 PDI_a_PDI_a'_C PDIa fa 97.5 0.00047 1E-08 54.6 7.8 92 133-241 8-102 (104)
66 cd02998 PDI_a_ERp38 PDIa famil 97.5 0.00048 1E-08 54.6 7.8 91 134-241 9-103 (105)
67 TIGR01295 PedC_BrcD bacterioci 97.5 0.0013 2.7E-08 55.4 10.4 101 134-247 12-120 (122)
68 PRK03147 thiol-disulfide oxido 97.5 0.00088 1.9E-08 58.4 9.8 92 145-245 60-170 (173)
69 cd02954 DIM1 Dim1 family; Dim1 97.4 0.001 2.2E-08 55.6 9.0 72 145-232 13-86 (114)
70 cd03005 PDI_a_ERp46 PDIa famil 97.4 0.0012 2.7E-08 52.2 9.0 90 133-240 8-99 (102)
71 cd02957 Phd_like Phosducin (Ph 97.4 0.001 2.2E-08 54.6 8.8 83 133-233 12-95 (113)
72 cd03001 PDI_a_P5 PDIa family, 97.4 0.0017 3.6E-08 51.5 9.3 85 144-241 16-100 (103)
73 cd03065 PDI_b_Calsequestrin_N 97.3 0.0024 5.3E-08 53.8 10.2 100 132-247 16-119 (120)
74 cd02987 Phd_like_Phd Phosducin 97.3 0.0025 5.5E-08 57.0 10.6 99 133-249 71-173 (175)
75 PTZ00443 Thioredoxin domain-co 97.3 0.0025 5.3E-08 59.4 10.8 104 130-247 35-139 (224)
76 TIGR02738 TrbB type-F conjugat 97.2 0.0014 2.9E-08 57.6 7.8 122 118-246 23-152 (153)
77 cd02989 Phd_like_TxnDC9 Phosdu 97.2 0.0022 4.9E-08 53.0 8.4 75 142-233 18-94 (113)
78 cd03010 TlpA_like_DsbE TlpA-li 97.1 0.0013 2.8E-08 54.6 6.7 89 142-238 21-125 (127)
79 smart00804 TAP_C C-terminal do 97.1 0.00089 1.9E-08 50.1 4.8 42 8-50 10-51 (63)
80 cd02966 TlpA_like_family TlpA- 97.1 0.0014 3E-08 51.7 6.2 81 141-232 14-116 (116)
81 cd03009 TryX_like_TryX_NRX Try 97.0 0.0025 5.4E-08 53.3 7.6 79 144-229 16-115 (131)
82 cd02992 PDI_a_QSOX PDIa family 97.0 0.0018 3.9E-08 53.6 6.0 78 132-222 8-88 (114)
83 cd02975 PfPDO_like_N Pyrococcu 97.0 0.011 2.3E-07 48.8 10.6 92 141-248 17-111 (113)
84 TIGR00424 APS_reduc 5'-adenyly 96.9 0.0041 9E-08 63.7 9.5 115 118-243 343-459 (463)
85 TIGR02739 TraF type-F conjugat 96.9 0.0089 1.9E-07 56.8 10.8 96 146-250 150-251 (256)
86 PF03943 TAP_C: TAP C-terminal 96.9 0.00048 1E-08 49.4 1.7 42 11-53 1-42 (51)
87 cd02982 PDI_b'_family Protein 96.9 0.003 6.6E-08 50.2 6.5 87 146-244 12-100 (103)
88 PRK13703 conjugal pilus assemb 96.9 0.0065 1.4E-07 57.4 9.6 98 146-252 143-246 (248)
89 PTZ00102 disulphide isomerase; 96.9 0.0036 7.9E-08 63.5 8.5 99 132-248 39-139 (477)
90 TIGR01130 ER_PDI_fam protein d 96.8 0.0046 1E-07 62.0 8.7 98 133-247 9-109 (462)
91 cd02962 TMX2 TMX2 family; comp 96.8 0.0078 1.7E-07 52.7 8.9 83 132-232 35-126 (152)
92 cd02952 TRP14_like Human TRX-r 96.8 0.0053 1.1E-07 51.7 7.3 74 145-227 20-103 (119)
93 cd02965 HyaE HyaE family; HyaE 96.7 0.018 4E-07 47.9 10.1 102 117-240 4-109 (111)
94 PLN02919 haloacid dehalogenase 96.6 0.016 3.5E-07 65.2 11.6 101 145-252 419-541 (1057)
95 PF13728 TraF: F plasmid trans 96.6 0.015 3.2E-07 53.8 9.3 93 145-243 119-214 (215)
96 PRK14018 trifunctional thiored 96.5 0.011 2.3E-07 61.6 8.9 93 145-244 55-170 (521)
97 cd02964 TryX_like_family Trypa 96.4 0.011 2.4E-07 49.6 7.2 86 137-229 8-115 (132)
98 PTZ00102 disulphide isomerase; 96.4 0.0071 1.5E-07 61.3 7.0 104 130-248 362-466 (477)
99 PLN02309 5'-adenylylsulfate re 96.4 0.018 4E-07 59.0 10.0 113 120-244 339-454 (457)
100 PF00627 UBA: UBA/TS-N domain; 96.4 0.0067 1.4E-07 40.2 4.5 35 10-46 2-36 (37)
101 cd00194 UBA Ubiquitin Associat 96.4 0.0082 1.8E-07 39.7 4.8 36 11-48 2-37 (38)
102 cd03008 TryX_like_RdCVF Trypar 96.4 0.0082 1.8E-07 52.3 6.0 79 144-229 23-128 (146)
103 cd02969 PRX_like1 Peroxiredoxi 96.3 0.028 6.2E-07 49.2 9.3 104 145-252 24-157 (171)
104 smart00165 UBA Ubiquitin assoc 96.3 0.009 2E-07 39.3 4.5 36 11-48 2-37 (37)
105 PTZ00062 glutaredoxin; Provisi 96.2 0.038 8.3E-07 50.8 10.0 91 134-249 5-96 (204)
106 TIGR02187 GlrX_arch Glutaredox 96.1 0.044 9.6E-07 50.2 9.7 90 145-249 19-113 (215)
107 PRK13728 conjugal transfer pro 96.1 0.043 9.4E-07 49.5 9.3 92 150-249 73-173 (181)
108 PLN02412 probable glutathione 96.0 0.025 5.5E-07 49.8 7.6 101 145-249 28-166 (167)
109 KOG0908 Thioredoxin-like prote 96.0 0.038 8.3E-07 52.1 8.7 97 139-252 14-111 (288)
110 PF13905 Thioredoxin_8: Thiore 96.0 0.02 4.4E-07 44.8 6.1 72 146-225 1-94 (95)
111 cd02988 Phd_like_VIAF Phosduci 95.8 0.079 1.7E-06 48.1 9.8 89 123-233 81-171 (192)
112 TIGR02661 MauD methylamine deh 95.7 0.078 1.7E-06 47.7 9.5 96 144-250 72-181 (189)
113 PTZ00056 glutathione peroxidas 95.7 0.093 2E-06 47.8 9.9 97 145-249 38-180 (199)
114 cd03012 TlpA_like_DipZ_like Tl 95.7 0.046 1E-06 45.4 7.3 81 145-232 22-124 (126)
115 cd03017 PRX_BCP Peroxiredoxin 95.6 0.061 1.3E-06 45.0 7.9 38 203-241 91-137 (140)
116 PLN02399 phospholipid hydroper 95.4 0.039 8.3E-07 51.9 6.6 34 213-247 201-234 (236)
117 KOG2244 Highly conserved prote 95.4 0.022 4.8E-07 58.7 5.2 80 136-221 102-186 (786)
118 cd02967 mauD Methylamine utili 95.0 0.13 2.8E-06 41.4 7.7 73 145-227 20-109 (114)
119 TIGR01130 ER_PDI_fam protein d 95.0 0.085 1.9E-06 52.8 8.1 95 130-243 351-450 (462)
120 cd00340 GSH_Peroxidase Glutath 94.9 0.025 5.3E-07 48.8 3.4 26 215-241 125-150 (152)
121 PRK15000 peroxidase; Provision 94.4 0.2 4.3E-06 45.7 8.2 91 145-245 33-160 (200)
122 TIGR03137 AhpC peroxiredoxin. 94.3 0.17 3.8E-06 45.3 7.5 90 145-244 30-153 (187)
123 cd03015 PRX_Typ2cys Peroxiredo 94.3 0.19 4E-06 44.3 7.6 97 145-245 28-155 (173)
124 KOG2501 Thioredoxin, nucleored 94.2 0.18 3.9E-06 44.4 7.2 87 137-228 24-130 (157)
125 PHA02125 thioredoxin-like prot 94.2 0.069 1.5E-06 40.6 4.1 71 150-243 2-73 (75)
126 cd03007 PDI_a_ERp29_N PDIa fam 94.2 0.35 7.5E-06 40.6 8.5 94 132-243 8-112 (116)
127 TIGR00411 redox_disulf_1 small 94.1 0.21 4.7E-06 37.6 6.7 74 152-246 5-81 (82)
128 PRK09437 bcp thioredoxin-depen 93.8 0.41 8.9E-06 40.9 8.6 33 214-248 121-153 (154)
129 TIGR02540 gpx7 putative glutat 93.5 0.91 2E-05 39.0 10.3 34 212-246 115-152 (153)
130 PF08534 Redoxin: Redoxin; In 93.4 0.32 6.9E-06 41.0 7.2 81 143-235 25-136 (146)
131 PRK11509 hydrogenase-1 operon 93.4 0.59 1.3E-05 40.1 8.7 114 114-250 9-127 (132)
132 PRK10382 alkyl hydroperoxide r 93.3 0.49 1.1E-05 42.8 8.5 110 125-245 9-154 (187)
133 PTZ00253 tryparedoxin peroxida 93.1 0.47 1E-05 42.9 8.2 84 145-232 35-145 (199)
134 COG3118 Thioredoxin domain-con 92.7 0.48 1E-05 45.9 7.9 100 132-250 30-129 (304)
135 TIGR00412 redox_disulf_2 small 92.2 0.65 1.4E-05 35.4 6.7 69 151-242 3-74 (76)
136 PF02845 CUE: CUE domain; Int 92.0 0.46 9.9E-06 32.2 5.0 39 11-49 2-40 (42)
137 KOG1364 Predicted ubiquitin re 91.8 0.015 3.2E-07 56.9 -3.6 87 142-230 7-96 (356)
138 PRK00522 tpx lipid hydroperoxi 91.4 1.7 3.7E-05 38.1 9.5 92 145-243 43-165 (167)
139 smart00546 CUE Domain that may 91.3 0.6 1.3E-05 31.8 5.1 40 11-50 3-42 (43)
140 TIGR02187 GlrX_arch Glutaredox 91.2 1.3 2.7E-05 40.6 8.7 84 143-245 129-214 (215)
141 PF00578 AhpC-TSA: AhpC/TSA fa 90.8 0.63 1.4E-05 37.7 5.7 73 145-227 24-122 (124)
142 KOG4351 Uncharacterized conser 90.5 0.037 8.1E-07 51.3 -2.1 45 8-52 21-67 (244)
143 PTZ00137 2-Cys peroxiredoxin; 90.1 1.1 2.4E-05 42.8 7.4 97 145-245 97-223 (261)
144 KOG0912 Thiol-disulfide isomer 89.6 0.56 1.2E-05 45.6 4.9 89 146-245 13-104 (375)
145 PRK13189 peroxiredoxin; Provis 88.7 1.9 4.1E-05 40.0 7.7 91 145-245 34-161 (222)
146 KOG0191 Thioredoxin/protein di 88.6 2 4.4E-05 42.8 8.4 96 140-249 41-136 (383)
147 TIGR00264 alpha-NAC-related pr 88.5 0.65 1.4E-05 38.9 4.0 34 11-45 79-112 (116)
148 PRK13190 putative peroxiredoxi 88.4 3.8 8.3E-05 37.2 9.4 97 145-246 26-153 (202)
149 cd02971 PRX_family Peroxiredox 87.9 2.7 5.9E-05 34.7 7.6 79 145-233 21-129 (140)
150 PTZ00256 glutathione peroxidas 87.8 5.5 0.00012 35.4 10.0 37 210-247 142-181 (183)
151 PRK06369 nac nascent polypepti 87.6 0.78 1.7E-05 38.4 4.0 36 10-46 76-111 (115)
152 cd02968 SCO SCO (an acronym fo 87.1 2.4 5.2E-05 35.2 6.9 44 145-191 21-68 (142)
153 PF13848 Thioredoxin_6: Thiore 86.7 3.3 7.2E-05 35.8 7.8 59 174-241 120-180 (184)
154 PRK13191 putative peroxiredoxi 86.7 3.4 7.3E-05 38.1 8.1 91 145-245 32-159 (215)
155 cd03026 AhpF_NTD_C TRX-GRX-lik 86.5 5 0.00011 31.6 7.9 79 143-241 8-88 (89)
156 TIGR01626 ytfJ_HI0045 conserve 86.2 6.9 0.00015 35.4 9.7 93 145-247 58-179 (184)
157 KOG3763 mRNA export factor TAP 85.3 1.1 2.5E-05 46.7 4.6 44 9-53 534-577 (585)
158 KOG0190 Protein disulfide isom 85.2 2.3 5.1E-05 44.0 6.8 96 130-244 30-129 (493)
159 cd01659 TRX_superfamily Thiore 85.0 1.5 3.2E-05 29.3 3.8 63 150-222 1-63 (69)
160 PF11543 UN_NPL4: Nuclear pore 83.9 0.69 1.5E-05 36.1 1.8 51 293-344 6-77 (80)
161 cd02983 P5_C P5 family, C-term 83.0 6.3 0.00014 33.4 7.5 68 173-250 48-118 (130)
162 PF02114 Phosducin: Phosducin; 83.0 5.7 0.00012 38.0 8.0 102 134-252 135-239 (265)
163 cd03018 PRX_AhpE_like Peroxire 82.9 5.8 0.00013 33.2 7.3 31 202-233 97-133 (149)
164 PRK13599 putative peroxiredoxi 82.3 7.5 0.00016 35.8 8.3 90 145-244 27-153 (215)
165 cd03016 PRX_1cys Peroxiredoxin 81.8 8 0.00017 35.1 8.3 88 147-244 26-151 (203)
166 cd03014 PRX_Atyp2cys Peroxired 81.2 7.4 0.00016 32.5 7.4 81 145-232 25-128 (143)
167 PRK10606 btuE putative glutath 78.5 20 0.00043 32.2 9.6 71 142-220 21-98 (183)
168 cd02973 TRX_GRX_like Thioredox 78.1 7.3 0.00016 28.1 5.6 54 151-218 4-58 (67)
169 COG1308 EGD2 Transcription fac 77.4 3.7 8E-05 34.7 4.1 35 11-46 85-119 (122)
170 PF06110 DUF953: Eukaryotic pr 76.5 5.6 0.00012 33.5 5.0 74 135-220 8-97 (119)
171 PF13192 Thioredoxin_3: Thiore 74.6 13 0.00029 28.0 6.4 69 154-243 6-75 (76)
172 TIGR02196 GlrX_YruB Glutaredox 74.1 20 0.00044 25.4 7.1 68 152-241 4-71 (74)
173 CHL00098 tsf elongation factor 69.0 6.5 0.00014 36.1 4.0 39 12-51 3-41 (200)
174 PRK09377 tsf elongation factor 67.1 7.1 0.00015 37.9 4.0 41 10-51 5-45 (290)
175 TIGR00116 tsf translation elon 66.9 7.2 0.00016 37.8 4.0 40 11-51 5-44 (290)
176 PRK12332 tsf elongation factor 66.6 7.8 0.00017 35.5 4.0 40 11-51 5-44 (198)
177 cd03072 PDI_b'_ERp44 PDIb' fam 66.3 17 0.00038 29.7 5.7 45 204-248 63-109 (111)
178 PF11547 E3_UbLigase_EDD: E3 u 65.8 19 0.00042 25.5 4.9 42 9-50 8-49 (53)
179 PF14595 Thioredoxin_9: Thiore 64.8 11 0.00024 32.0 4.3 79 140-233 35-117 (129)
180 PF08817 YukD: WXG100 protein 62.8 8.1 0.00018 29.6 2.9 31 309-344 48-78 (79)
181 cd01807 GDX_N ubiquitin-like d 62.2 15 0.00033 27.5 4.3 46 293-344 2-70 (74)
182 KOG3077 Uncharacterized conser 62.2 4.2 9E-05 38.8 1.4 38 10-48 8-46 (260)
183 KOG2756 Predicted Mg2+-depende 61.9 5.2 0.00011 38.5 2.0 39 13-51 27-65 (349)
184 PF03765 CRAL_TRIO_N: CRAL/TRI 58.3 17 0.00037 25.6 3.8 27 22-48 27-53 (55)
185 cd01792 ISG15_repeat1 ISG15 ub 57.8 29 0.00062 26.5 5.3 47 292-342 3-71 (80)
186 TIGR02200 GlrX_actino Glutared 57.0 45 0.00097 24.2 6.1 70 153-244 5-76 (77)
187 PRK10877 protein disulfide iso 56.9 37 0.0008 31.6 6.8 94 138-244 99-228 (232)
188 cd02970 PRX_like2 Peroxiredoxi 56.9 27 0.00059 28.8 5.5 67 146-225 24-91 (149)
189 cd01806 Nedd8 Nebb8-like ubiq 56.1 23 0.0005 26.1 4.4 20 321-342 48-67 (76)
190 KOG0190 Protein disulfide isom 55.5 25 0.00054 36.6 5.8 103 130-252 371-474 (493)
191 COG0526 TrxA Thiol-disulfide i 54.6 41 0.00088 25.0 5.8 61 146-220 32-97 (127)
192 KOG1071 Mitochondrial translat 53.2 15 0.00033 35.9 3.6 37 9-46 45-81 (340)
193 COG1225 Bcp Peroxiredoxin [Pos 51.9 1.4E+02 0.003 26.4 9.1 97 139-245 23-154 (157)
194 COG0264 Tsf Translation elonga 49.9 22 0.00048 34.5 4.1 40 11-51 6-45 (296)
195 KOG4277 Uncharacterized conser 48.3 61 0.0013 31.9 6.8 98 131-241 29-126 (468)
196 cd01763 Sumo Small ubiquitin-r 47.7 67 0.0014 25.0 6.0 50 288-343 8-79 (87)
197 PF03474 DMA: DMRTA motif; In 46.6 21 0.00046 24.2 2.5 25 23-47 14-38 (39)
198 COG3531 Predicted protein-disu 46.2 48 0.001 30.6 5.4 47 200-248 162-210 (212)
199 cd03013 PRX5_like Peroxiredoxi 46.0 50 0.0011 28.5 5.5 67 145-221 28-98 (155)
200 PF06972 DUF1296: Protein of u 44.3 73 0.0016 23.6 5.1 42 9-50 4-45 (60)
201 TIGR03143 AhpF_homolog putativ 42.8 89 0.0019 32.8 7.7 83 141-243 470-554 (555)
202 TIGR02180 GRX_euk Glutaredoxin 40.9 26 0.00055 26.0 2.5 59 151-220 2-61 (84)
203 KOG1731 FAD-dependent sulfhydr 40.6 34 0.00073 36.3 4.0 103 130-247 44-153 (606)
204 cd01809 Scythe_N Ubiquitin-lik 39.4 57 0.0012 23.7 4.2 18 328-345 53-71 (72)
205 PTZ00044 ubiquitin; Provisiona 37.7 61 0.0013 24.0 4.2 31 308-344 39-70 (76)
206 cd01810 ISG15_repeat2 ISG15 ub 37.6 52 0.0011 24.5 3.8 31 308-344 37-68 (74)
207 PRK05441 murQ N-acetylmuramic 37.5 39 0.00085 32.7 3.8 39 11-50 236-274 (299)
208 cd04598 CBS_pair_GGDEF_assoc T 36.9 1.1E+02 0.0023 23.8 5.8 62 168-241 57-118 (119)
209 PF00681 Plectin: Plectin repe 36.8 38 0.00082 23.2 2.6 22 217-238 12-37 (45)
210 KOG0191 Thioredoxin/protein di 36.2 68 0.0015 31.9 5.4 97 140-249 156-254 (383)
211 cd01803 Ubiquitin Ubiquitin. U 36.2 67 0.0015 23.5 4.2 22 321-344 48-70 (76)
212 COG2103 Predicted sugar phosph 36.0 45 0.00098 32.2 3.8 41 10-51 233-273 (298)
213 cd01791 Ubl5 UBL5 ubiquitin-li 35.6 97 0.0021 23.4 5.0 20 321-342 49-68 (73)
214 cd01798 parkin_N amino-termina 34.9 52 0.0011 24.2 3.4 30 308-343 37-67 (70)
215 TIGR00274 N-acetylmuramic acid 34.7 47 0.001 32.1 3.9 39 11-50 231-269 (291)
216 cd01804 midnolin_N Ubiquitin-l 34.1 83 0.0018 23.9 4.5 20 321-343 49-69 (78)
217 cd01808 hPLIC_N Ubiquitin-like 33.6 90 0.0019 23.0 4.5 31 309-345 39-70 (71)
218 cd03419 GRX_GRXh_1_2_like Glut 33.5 1.5E+02 0.0033 21.7 5.8 54 151-220 3-60 (82)
219 PRK10329 glutaredoxin-like pro 31.6 2.3E+02 0.0051 21.5 7.3 67 154-243 7-73 (81)
220 cd01805 RAD23_N Ubiquitin-like 31.6 86 0.0019 23.2 4.2 20 321-342 50-69 (77)
221 cd03028 GRX_PICOT_like Glutare 31.5 1.1E+02 0.0025 23.6 5.0 58 147-220 8-70 (90)
222 PF00240 ubiquitin: Ubiquitin 29.4 78 0.0017 22.8 3.5 30 308-343 34-63 (69)
223 PRK12570 N-acetylmuramic acid- 29.2 62 0.0014 31.3 3.7 39 11-50 232-270 (296)
224 PF05768 DUF836: Glutaredoxin- 29.0 1.2E+02 0.0027 22.9 4.7 80 150-244 2-81 (81)
225 cd01794 DC_UbP_C dendritic cel 29.0 74 0.0016 23.8 3.3 21 321-343 46-66 (70)
226 cd04606 CBS_pair_Mg_transporte 28.0 2.3E+02 0.005 21.6 6.3 95 132-242 5-108 (109)
227 KOG2456 Aldehyde dehydrogenase 27.2 75 0.0016 32.5 3.9 48 119-179 333-380 (477)
228 PF14836 Ubiquitin_3: Ubiquiti 26.8 45 0.00098 26.6 1.9 23 321-343 54-76 (88)
229 PF00571 CBS: CBS domain CBS d 26.7 1.3E+02 0.0028 20.4 4.1 56 174-244 1-56 (57)
230 KOG3414 Component of the U4/U6 26.1 4.3E+02 0.0093 22.8 8.5 95 142-248 19-121 (142)
231 PF11976 Rad60-SLD: Ubiquitin- 25.5 1.3E+02 0.0028 21.9 4.1 21 321-343 49-69 (72)
232 smart00250 PLEC Plectin repeat 25.5 28 0.0006 22.9 0.4 25 213-237 8-36 (38)
233 PF00462 Glutaredoxin: Glutare 24.8 1.5E+02 0.0032 20.7 4.2 52 153-218 4-55 (60)
234 PF15650 Tox-REase-9: Restrict 24.7 52 0.0011 26.2 1.8 27 291-317 26-57 (89)
235 TIGR02190 GlrX-dom Glutaredoxi 23.7 2.1E+02 0.0046 21.3 5.1 51 154-220 14-64 (79)
236 cd03073 PDI_b'_ERp72_ERp57 PDI 23.5 2.3E+02 0.0051 23.0 5.6 40 203-244 64-108 (111)
237 PF06491 Disulph_isomer: Disul 23.2 58 0.0013 28.0 2.0 50 198-250 78-135 (136)
238 PRK15317 alkyl hydroperoxide r 22.7 4.2E+02 0.0092 27.3 8.7 89 138-245 107-196 (517)
239 cd02066 GRX_family Glutaredoxi 22.6 2E+02 0.0043 19.8 4.6 50 154-218 6-56 (72)
240 cd02976 NrdH NrdH-redoxin (Nrd 22.4 2.7E+02 0.0059 19.2 7.2 68 150-240 2-70 (73)
241 KOG0944 Ubiquitin-specific pro 22.1 97 0.0021 33.6 3.7 42 9-52 634-675 (763)
242 PF04221 RelB: RelB antitoxin; 21.8 1.1E+02 0.0024 23.6 3.2 25 26-50 13-37 (83)
243 cd01796 DDI1_N DNA damage indu 21.7 1.2E+02 0.0026 22.5 3.2 22 321-343 47-68 (71)
244 cd01802 AN1_N ubiquitin-like d 20.9 2.2E+02 0.0047 23.0 4.9 49 290-344 26-97 (103)
245 cd01797 NIRF_N amino-terminal 20.9 2E+02 0.0044 21.9 4.5 21 321-343 50-71 (78)
246 cd03029 GRX_hybridPRX5 Glutare 20.5 3E+02 0.0064 19.9 5.2 51 154-220 7-57 (72)
247 PRK11657 dsbG disulfide isomer 20.5 2.3E+02 0.005 26.6 5.7 97 138-243 109-248 (251)
248 PF03413 PepSY: Peptidase prop 20.4 1.1E+02 0.0024 21.3 2.8 60 134-230 3-64 (64)
249 PF01011 PQQ: PQQ enzyme repea 20.3 1.5E+02 0.0032 19.1 3.1 18 214-231 10-27 (38)
250 cd04640 CBS_pair_27 The CBS do 20.0 2.3E+02 0.0051 22.4 5.0 102 132-241 9-125 (126)
No 1
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-42 Score=328.79 Aligned_cols=283 Identities=33% Similarity=0.582 Sum_probs=213.1
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCCCccccccCCcccc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYY 87 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~~~~d~~~~~~~~~~~vraP~~~~~e~L~~~~~~~ 87 (346)
.++.++|.+|++||..++.+.|++||++++|||+.||++||++++.. ..+.+...+..|++.++++|+..-...
T Consensus 4 ~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~------~~~s~~~~a~sp~~~~re~l~~~~~~~ 77 (356)
T KOG1364|consen 4 GAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFT------QVYSSSSAAPSPIEPQREVLFDPLGIM 77 (356)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccc------cccCCcccCCCcccccceeeecccccc
Confidence 46788999999996559999999999999999999999999987642 222234445569999999998752200
Q ss_pred cCC-CCccccCCCCccccCCCCCCCcchhhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCcccccccc
Q 036413 88 QQK-NPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNR 166 (346)
Q Consensus 88 ~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnR 166 (346)
-.. ....+.. ..+.+ .+.-.+...+|+.||+||++||+.|+|+.|+..|.++.+||||
T Consensus 78 d~~~~s~~~p~----~~~~~--~s~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV--------------- 136 (356)
T KOG1364|consen 78 DQSTSSILDPS----ENQDD--ESEHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV--------------- 136 (356)
T ss_pred ccCcccccCcc----cccch--hhhhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE---------------
Confidence 000 0000000 00110 0111344679999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 167 DTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 167 dvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+.+ +.||+++..+|++.+.|||+||||+||++|++|.|.+.|+.|++.|.+|
T Consensus 137 ----------------------~~D------tseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~F 188 (356)
T KOG1364|consen 137 ----------------------LDD------TSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEF 188 (356)
T ss_pred ----------------------eec------cCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHH
Confidence 123 8899999999999999999999999999999999999999999999999
Q ss_pred HHcCCccccc---cCc----cC---CCC-CC--------------------C-----CcC-------cCCCCCCCCCCCC
Q 036413 247 MESGPRDQLE---RAT----KT---QLP-PY--------------------P-----PVH-------EQMPAYPAVPEEP 283 (346)
Q Consensus 247 l~~~~~~~~~---~~~----~~---~l~-e~--------------------~-----~~e-------~~~~~~~~~~~EP 283 (346)
++.+++++++ +++ .. .++ |. + +.| ...-.++.+..||
T Consensus 189 i~~~~~d~vas~t~n~~~p~~e~~~~ss~e~~~~elai~~sv~~~~~~~e~e~~~~s~~ee~e~~~e~~~~~~~~a~~ep 268 (356)
T KOG1364|consen 189 IDSCPHDEVASLTRNRKRPKTEPTCLSSEEDMQMELAIKNSVVNPSSGTEFEGQGASDEEELETVLEEDLFVFPVATVEP 268 (356)
T ss_pred HhcCCccccccccccccCCCCCccccccccchhhhcccccccccCCCcccccCCCCcccchhhccccccccccceeeecC
Confidence 9999999776 222 11 111 00 0 001 1112345555666
Q ss_pred CC-CCCCCeeEEEEEcCCCccc-----------------------cCCcceEEecCCCCCCCCccCCcccchhhcCCCce
Q 036413 284 LQ-VARNLVCRIGVRLPDGQEA-----------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNS 339 (346)
Q Consensus 284 ~~-~~~~~~trIqiRlpdG~ri-----------------------~~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~ 339 (346)
.. .+++.+|+||||+|||+|. .....|+|+.+|| +.|.|.++.|.||+||||+|+
T Consensus 269 ~~~~~~svvt~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P-~~k~l~~~~daT~~eaGL~nS 347 (356)
T KOG1364|consen 269 KGDCDRSVVTSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIP-ASKTLDYGADATFKEAGLANS 347 (356)
T ss_pred CCCCCccceeEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeeccc-chhhhhccccchHHHhccCcc
Confidence 65 3677899999999999996 1357999999999 568999999999999999999
Q ss_pred --eEEEEeC
Q 036413 340 --VILVTLE 346 (346)
Q Consensus 340 --~vl~~~~ 346 (346)
.+.+.|+
T Consensus 348 ~~~~~~e~e 356 (356)
T KOG1364|consen 348 ETLLSVEWE 356 (356)
T ss_pred ccccccccC
Confidence 5555553
No 2
>smart00594 UAS UAS domain.
Probab=99.95 E-value=7.8e-28 Score=202.48 Aligned_cols=115 Identities=43% Similarity=0.701 Sum_probs=108.0
Q ss_pred hcCCCc-ccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH
Q 036413 122 LYRPPV-DLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE 200 (346)
Q Consensus 122 lf~PP~-~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e 200 (346)
+|.||+ ++||.|||++|++.|++++|++|||||+++|..|+.|||+||+|+.|+++|+ +|||+|+++++ +++
T Consensus 2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~------~~e 74 (122)
T smart00594 2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVD------TSE 74 (122)
T ss_pred CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCC------Chh
Confidence 577888 8899999999999999999999999999999999999999999999999999 99999999999 999
Q ss_pred HHHHHhhcCCCCCceEEEEeCCCCce----EEEEeCCCChHHHHHHH
Q 036413 201 CRKVCGYYKLDSLPVVLVIDPITGEK----MRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 201 g~~~~~~y~~~~~P~i~iidp~tge~----l~~~~G~~~~~~~i~~L 243 (346)
|.++++.|++.+||+++||+|++|+. +.+++|.+++++|+..|
T Consensus 75 g~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 75 GQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99999999999999999999998764 34568999999999877
No 3
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.95 E-value=2.3e-27 Score=198.47 Aligned_cols=114 Identities=19% Similarity=0.375 Sum_probs=108.4
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
||+|||++|++.||++.||||||||++.|.+|..+||+||+|++|+++|+ +|||+|++|++ ++||.++++.++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-~~fv~w~~dv~------~~eg~~la~~l~ 73 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-TRMLFWACSVA------KPEGYRVSQALR 73 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-cCEEEEEEecC------ChHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999 99999999999 999999999999
Q ss_pred CCCCceEEEEeCCCCc--eEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 210 LDSLPVVLVIDPITGE--KMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 210 ~~~~P~i~iidp~tge--~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+.+||+++||+|+.++ .+.+++|.++|++|+..|..+++++
T Consensus 74 ~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 74 ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 9999999999987654 4678999999999999999998764
No 4
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.94 E-value=1.7e-26 Score=191.35 Aligned_cols=113 Identities=49% Similarity=0.870 Sum_probs=110.1
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
||.|+|++|++.||+++||||||||+++|..|+.|+|+||+++.|+++|+ +|||+|.++++ +++|.+++..|+
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~------~~e~~~~~~~~~ 73 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDID------SSEGQRFLQSYK 73 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCC------CccHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999 99999999999 899999999999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
+..+|++++|+|++|+.+.++.|.+++++|++.|.++++.
T Consensus 74 ~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 74 VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 9999999999998899999999999999999999998875
No 5
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.93 E-value=2.7e-25 Score=190.10 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=104.6
Q ss_pred ccccCHHHHHHHh----hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----
Q 036413 130 MFNGSFEKAKDVG----SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----- 200 (346)
Q Consensus 130 ~~~gsf~~A~~~A----k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----- 200 (346)
||.|+|++|++.| |++.|+|+||||++.+.+|..|||+|+||+.|++||+ +|||+|+||++ .++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~-~nfv~Wg~dvt------~~~~~~~f 73 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS-QNFITWGWDMT------KESNKARF 73 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH-cCEEEEeeecc------chhhhhHH
Confidence 6899999999999 9999999999999999999999999999999999999 99999999999 554
Q ss_pred -----------HHHHHhhcCCCCCceEEEEeCCCC--ceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 201 -----------CRKVCGYYKLDSLPVVLVIDPITG--EKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 201 -----------g~~~~~~y~~~~~P~i~iidp~tg--e~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+.+.++.+++++||+++||.+..+ +.+.+++|.++|++++++|.+.++.|
T Consensus 74 l~~~~~~~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 74 LSSCTRHFGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred HHhhhhhhhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 666788899999999999997544 56677899999999999999998864
No 6
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=99.70 E-value=1.1e-17 Score=168.44 Aligned_cols=222 Identities=20% Similarity=0.287 Sum_probs=161.9
Q ss_pred hhhHHHHhhcCCCcccccccCHHHHHHHhhhcC----cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEee
Q 036413 114 NNNNNLASLYRPPVDLMFNGSFEKAKDVGSDEN----KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVY 189 (346)
Q Consensus 114 ~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~----K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~ 189 (346)
++...|.+.|+.+++.||.|.+..|...|.+.. |.|++|||++...+...||+.|+||+.|++||+ +|||+|.|+
T Consensus 146 ~f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~-~~~llw~~d 224 (460)
T KOG1363|consen 146 TFVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLR-ENFLLWGWD 224 (460)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHh-hceeeeccc
Confidence 378899999999999999999999988886655 999999999999999999999999999999999 999999999
Q ss_pred cCCCCCCCChHHHHHHhhcCCC----------------CCceEEEEeC-CCC-ceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 190 DDDDDDDDDSECRKVCGYYKLD----------------SLPVVLVIDP-ITG-EKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 190 ~~~~~~~~~~eg~~~~~~y~~~----------------~~P~i~iidp-~tg-e~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
+. +++|..+.+.+.+. .||.+.|+-- ++. |++..++|.++..+.+..+..+++.++
T Consensus 225 vt------~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~ 298 (460)
T KOG1363|consen 225 VT------ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEE 298 (460)
T ss_pred cc------CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhh
Confidence 99 99999999998887 5666666652 121 233345677777777777766665554
Q ss_pred ccccccCc-------------c------CCCC-------CC-------------C-CcCc----C--CCCCCCCCCCCCC
Q 036413 252 RDQLERAT-------------K------TQLP-------PY-------------P-PVHE----Q--MPAYPAVPEEPLQ 285 (346)
Q Consensus 252 ~~~~~~~~-------------~------~~l~-------e~-------------~-~~e~----~--~~~~~~~~~EP~~ 285 (346)
.....+.+ . .+++ ++ . .+++ + ......+|+||.+
T Consensus 299 ~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a 378 (460)
T KOG1363|consen 299 RRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSA 378 (460)
T ss_pred HHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCc
Confidence 33221100 0 0110 00 0 0000 0 1245678999966
Q ss_pred CCCCCeeEEEEEcCCCccc--------------------c-CCcceEEecCCCCCCCCccC-CcccchhhcCCCc--eeE
Q 036413 286 VARNLVCRIGVRLPDGQEA--------------------N-QTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLNN--SVI 341 (346)
Q Consensus 286 ~~~~~~trIqiRlpdG~ri--------------------~-~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~n--~~v 341 (346)
...++.+|.||+|+|.|. . .+..|.+.+.||. +.+.. ....|+++.||.. .+|
T Consensus 379 -~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~~~~~~e~~~~~~fPr--~~~~~~~~~~sl~~~~l~p~qe~l 455 (460)
T KOG1363|consen 379 -SEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSNGFHPEEYSLNTSFPR--RPLGDYEHSSSLQDIGLTPRQETL 455 (460)
T ss_pred -CcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhccCCchhhccccCCCc--ccccccccccccccCCccccccee
Confidence 567899999999999987 1 2468999999996 33444 4577999999986 444
Q ss_pred EEEe
Q 036413 342 LVTL 345 (346)
Q Consensus 342 l~~~ 345 (346)
.+.|
T Consensus 456 flE~ 459 (460)
T KOG1363|consen 456 FLEE 459 (460)
T ss_pred eeec
Confidence 4444
No 7
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.51 E-value=3.2e-14 Score=111.13 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=70.7
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++|+..|++++|+|||+++++||..|+.|.|.+|.++.|.++++ +|||++.++++ ..++..-... .
T Consensus 3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~------~~~~~~~~~~---~ 72 (82)
T PF13899_consen 3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD------DEDPNAQFDR---Q 72 (82)
T ss_dssp ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT------THHHHHHHHH---C
T ss_pred hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC------CCChhHHhCC---c
Confidence 358999999999999999999999999999999999999999999999 99999999998 6665442221 2
Q ss_pred CCceEEEEeC
Q 036413 212 SLPVVLVIDP 221 (346)
Q Consensus 212 ~~P~i~iidp 221 (346)
-+|+++|+||
T Consensus 73 ~~P~~~~ldp 82 (82)
T PF13899_consen 73 GYPTFFFLDP 82 (82)
T ss_dssp SSSEEEEEET
T ss_pred cCCEEEEeCC
Confidence 2999999997
No 8
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.47 E-value=1e-12 Score=128.62 Aligned_cols=110 Identities=22% Similarity=0.394 Sum_probs=102.4
Q ss_pred cccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 129 LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 129 l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
+-|+|+..+|+..||..++.++|||.+.++ .++.|+|=+|.+..|.+.+. ..||...++.. +..+.+|+..|
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gddE-~s~kl~r~~w~d~~vs~~ls-~~fVaIkiqag------s~aa~qFs~IY 73 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGDDE-ESDKLNRLTWTDASVSDSLS-KYFVAIKIQAG------SVAATQFSAIY 73 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecCch-HhhHHhhccchhhhhhhhhh-cceEEEEeccC------chhhhhhhhhc
Confidence 358999999999999999999999988644 78999999999999999999 99999999999 99999999999
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
++-..|.+++|+ .+|--+.++.|++++++|.+.|++.+
T Consensus 74 p~v~vPs~ffIg-~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 74 PYVSVPSIFFIG-FSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred ccccccceeeec-CCCceeEEeeccccHHHHHHHHHHHH
Confidence 999999999999 58999999999999999999887764
No 9
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.47 E-value=8.3e-14 Score=108.90 Aligned_cols=54 Identities=33% Similarity=0.469 Sum_probs=47.3
Q ss_pred CCeeEEEEEcCCCccc---------------------c--CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEEEe
Q 036413 289 NLVCRIGVRLPDGQEA---------------------N--QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTL 345 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri---------------------~--~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~~~ 345 (346)
.++|+||||||||+|+ . ..++|+|+++||+ +.+.++ ++||+||||+||+|+++|
T Consensus 2 ~p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~--k~l~~~-~~Tl~eagL~~s~v~q~~ 78 (79)
T cd01770 2 EPTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV--KELSDE-SLTLKEANLLNAVIVQRL 78 (79)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC--cccCCC-CCcHHHCCCcCcEEEEEe
Confidence 4689999999999998 1 2389999999996 667666 999999999999999999
No 10
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.35 E-value=7.5e-12 Score=105.98 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=76.5
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH-HH----hhcCC
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK-VC----GYYKL 210 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~-~~----~~y~~ 210 (346)
++|++.|++++|+|||+++++||..|+.|.+.||.+++|.++|+ ++||+..+|+++ .++-.+ +. ..|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~-----~~~~~~~~~~~~~~~~~~ 78 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREE-----RPDVDKIYMNAAQAMTGQ 78 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCc-----CcHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999 999999999873 333222 22 24688
Q ss_pred CCCceEEEEeCCCCceEEEEeC
Q 036413 211 DSLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G 232 (346)
..+|++++++| .|+.+....+
T Consensus 79 ~G~Pt~vfl~~-~G~~~~~~~~ 99 (124)
T cd02955 79 GGWPLNVFLTP-DLKPFFGGTY 99 (124)
T ss_pred CCCCEEEEECC-CCCEEeeeee
Confidence 89999999998 5998866543
No 11
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.35 E-value=1.7e-12 Score=110.53 Aligned_cols=91 Identities=15% Similarity=0.248 Sum_probs=75.1
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
..-+|++|+..||+++|+|||+++++||..|+.|.+.+|++++|+++++ +|||..-.+.+.-+++.++.|
T Consensus 8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~~Fv~V~l~~d~td~~~~~~g--------- 77 (130)
T cd02960 8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-EDFIMLNLVHETTDKNLSPDG--------- 77 (130)
T ss_pred chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-hCeEEEEEEeccCCCCcCccC---------
Confidence 3448999999999999999999999999999999999999999999999 999977776652122222222
Q ss_pred CCCceEEEEeCCCCceEEEEeC
Q 036413 211 DSLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G 232 (346)
.-+|+++++|| .|+.+..+.|
T Consensus 78 ~~vPtivFld~-~g~vi~~i~G 98 (130)
T cd02960 78 QYVPRIMFVDP-SLTVRADITG 98 (130)
T ss_pred cccCeEEEECC-CCCCcccccc
Confidence 24899999998 5888877766
No 12
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.34 E-value=1.2e-12 Score=90.63 Aligned_cols=42 Identities=29% Similarity=0.646 Sum_probs=36.4
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
+++|.+||+| ||+++++|++||++|||||+.||++||+.+++
T Consensus 1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 5799999999 68899999999999999999999999997653
No 13
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.29 E-value=2.5e-11 Score=101.63 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=96.2
Q ss_pred CHHHHHHHhhhcC-cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC-----CCChHHHHHHhh
Q 036413 134 SFEKAKDVGSDEN-KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD-----DDDSECRKVCGY 207 (346)
Q Consensus 134 sf~~A~~~Ak~~~-K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~-----~~~~eg~~~~~~ 207 (346)
++-++++.|++++ |++||++.++||..|+.|...++.++.+.+.++ ++|+++.++++.+.. ........++..
T Consensus 1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 3568899999999 999999999999999999999999999999999 899999998872000 000135688999
Q ss_pred cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
|++..+|++.++++..|+.+.++.|..+.+.|.+.|..+++.
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999999999984378888999998888888888877654
No 14
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=99.21 E-value=2.5e-11 Score=94.07 Aligned_cols=54 Identities=33% Similarity=0.544 Sum_probs=46.5
Q ss_pred CeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCccC-CcccchhhcCCCceeEEEEe
Q 036413 290 LVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLNNSVILVTL 345 (346)
Q Consensus 290 ~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~n~~vl~~~ 345 (346)
++|+|+||||||+|+ .....|+|.+.||+ +.+.+ +.++||+++||.|++++|+|
T Consensus 1 p~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr--~~~~~~~~~~TL~e~gL~~s~~~~~~ 76 (77)
T cd01767 1 PTTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPR--RVLTDLDYELTLQEAGLVNEVVFQRL 76 (77)
T ss_pred CcEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCC--ccCCCCCccCcHHHcCCccceEEEEe
Confidence 489999999999998 12478999999995 55655 58999999999999999999
No 15
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.18 E-value=4e-11 Score=95.06 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=47.1
Q ss_pred CCeeEEEEEcCCCccc--------------------c-CCcceEEecCCCCCCCCcc------CCcccchhhcCCCceeE
Q 036413 289 NLVCRIGVRLPDGQEA--------------------N-QTRQFRLTRPDPGAPKPLD------YNSKMTFQESGLNNSVI 341 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri--------------------~-~~~~f~l~~~~P~~~~~l~------~~~d~TieeagL~n~~v 341 (346)
+++|+||||||||+|+ . .+..|+|++.||+ +.+. ++.++||+||||.++.+
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~~~~~f~L~t~FPr--r~~~~~~~~~~~~~~TL~eaGL~~s~~ 79 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKETPEKFQIVTNFPR--RVLPCLPSEGDPPPPTLLEAGLSNSEV 79 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCCCCCcEEEecCCCC--ccccccccccCcCCCCHHHcCCCCccE
Confidence 4689999999999998 1 2578999999995 4443 35688999999999999
Q ss_pred EEEeC
Q 036413 342 LVTLE 346 (346)
Q Consensus 342 l~~~~ 346 (346)
|+++|
T Consensus 80 L~V~d 84 (85)
T cd01774 80 LFVQD 84 (85)
T ss_pred EEEec
Confidence 99986
No 16
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=99.16 E-value=4.7e-11 Score=116.46 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=39.3
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
...+.|.+|+++ |+.++..|+.||+.++||++.|...++....
T Consensus 3 ~p~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~~ 45 (380)
T KOG2086|consen 3 IPLDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAFA 45 (380)
T ss_pred CchhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhccccc
Confidence 356789999999 9999999999999999999999999998654
No 17
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.11 E-value=2.8e-10 Score=92.12 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=87.5
Q ss_pred HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceE
Q 036413 137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVV 216 (346)
Q Consensus 137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i 216 (346)
+++..|.+++|++||++.++||..|+.|.+-++.++.+.+.++ +++++..++++. .......+++.|++..+|++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~----~~~~~~~~~~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-KDVVLLRADWTK----NDPEITALLKRFGVFGPPTY 76 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-CCeEEEEEecCC----CCHHHHHHHHHcCCCCCCEE
Confidence 5667788999999999999999999999988888999999999 899999998872 02335789999999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 217 LVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 217 ~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
.|+++-.|+.+....|..+.++|.+.|
T Consensus 77 ~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 77 LFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEECCCCCCCCcccccccCHHHHHHHh
Confidence 999973588888889999988877665
No 18
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.01 E-value=8.3e-10 Score=86.72 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=45.7
Q ss_pred CCCeeEEEEEcCCCccc--------------------c-CCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEEEe
Q 036413 288 RNLVCRIGVRLPDGQEA--------------------N-QTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILVTL 345 (346)
Q Consensus 288 ~~~~trIqiRlpdG~ri--------------------~-~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~~~ 345 (346)
.+++|+|+||||||+|+ . .+..|+|++.||. +.+. .+.+.||++|||.++.+|++=
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~g~~~~~f~L~t~FPR--r~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSKGYPNERFELLTNFPR--RKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCC--cccCCcccCCCHHHcCCCCCcEEEEe
Confidence 45799999999999998 1 2478999999996 4443 355689999999999988863
No 19
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=98.99 E-value=9.2e-10 Score=85.95 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=42.3
Q ss_pred CCeeEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccC-CcccchhhcCCC-ceeEEEE
Q 036413 289 NLVCRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLN-NSVILVT 344 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~-n~~vl~~ 344 (346)
.+.|+||||||||+|+ . ..++|+|.+.||+ +.+.+ +.++||+++||. +++|+|+
T Consensus 2 ~~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Pr--k~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 2 SDQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPR--RTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCC--cCCccccccCCHHHCCCCCceEEEEe
Confidence 3689999999999998 1 2468999999995 44433 347899999997 5666665
Q ss_pred e
Q 036413 345 L 345 (346)
Q Consensus 345 ~ 345 (346)
|
T Consensus 80 ~ 80 (80)
T smart00166 80 P 80 (80)
T ss_pred C
Confidence 5
No 20
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=98.96 E-value=1.3e-09 Score=85.37 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=44.5
Q ss_pred CCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEEE
Q 036413 289 NLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILVT 344 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~~ 344 (346)
.++|+||||||||+|+ ...+.|+|++.||. +.+. .+.+.||+++||.++.+|++
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~~~~~~~f~L~t~fPR--k~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASKGYPIDEYKLLSSWPR--RDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCC--CCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 5799999999999998 12478999999995 5553 46788999999998877765
No 21
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.94 E-value=2.9e-09 Score=93.99 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=63.7
Q ss_pred HHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH-HHh----hcC
Q 036413 135 FEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK-VCG----YYK 209 (346)
Q Consensus 135 f~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~-~~~----~y~ 209 (346)
.++|++.||+++|+|||.|...+|-.|++|.++++.|++|.++|| +|||-..+|.++ .++-.. |.+ ..+
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN-~~FI~VkvDree-----~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN-RNFIPVKVDREE-----RPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH-HH-EEEEEETTT------HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh-CCEEEEEecccc-----CccHHHHHHHHHHHhcC
Confidence 369999999999999999999999999999999999999999999 999999998884 455222 211 125
Q ss_pred CCCCceEEEEeCCCCceEEE
Q 036413 210 LDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~ 229 (346)
...+|..++++| .|+.+..
T Consensus 100 ~gGwPl~vfltP-dg~p~~~ 118 (163)
T PF03190_consen 100 SGGWPLTVFLTP-DGKPFFG 118 (163)
T ss_dssp ---SSEEEEE-T-TS-EEEE
T ss_pred CCCCCceEEECC-CCCeeee
Confidence 678999999999 6877654
No 22
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.90 E-value=9.8e-10 Score=89.60 Aligned_cols=94 Identities=21% Similarity=0.374 Sum_probs=78.4
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH------------------HHH
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE------------------CRK 203 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e------------------g~~ 203 (346)
||.++|.++|++.+++|..|+.|...+..+..+...++ .+|.+..++.+ +.. ...
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNID------DSRDESEAVLDFDGQKNVRLSNKE 73 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESH------SHHHHHHHHHSHTCHSSCHHHHHH
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecC------CcccccccccccccchhhhHHHHH
Confidence 78899999999999999999999999999999999999 89999999888 332 346
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
++..|++..+|++.++|+ .|+.+.+..|.+++++|...|
T Consensus 74 l~~~~~v~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHTT--SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred HHHHcCCCccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 889999999999999995 699998899999999998775
No 23
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.90 E-value=2.8e-09 Score=83.27 Aligned_cols=56 Identities=32% Similarity=0.482 Sum_probs=42.3
Q ss_pred CCCeeEEEEEcCCCccc---------------------cC-Cc-ceEEecCCCCCCCCccCCcccchhhcCCC-ceeEEE
Q 036413 288 RNLVCRIGVRLPDGQEA---------------------NQ-TR-QFRLTRPDPGAPKPLDYNSKMTFQESGLN-NSVILV 343 (346)
Q Consensus 288 ~~~~trIqiRlpdG~ri---------------------~~-~~-~f~l~~~~P~~~~~l~~~~d~TieeagL~-n~~vl~ 343 (346)
..+.|+|+||||||+++ .. .. .|+|+++||+ +.+..+.++||+++||. +++|+|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr--~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPR--RELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSST--EECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCC--cCCCccccccHHHhcCCCCeEEEE
Confidence 46799999999999998 12 23 3999999995 44544446999999888 677777
Q ss_pred Ee
Q 036413 344 TL 345 (346)
Q Consensus 344 ~~ 345 (346)
+|
T Consensus 81 ~~ 82 (82)
T PF00789_consen 81 EK 82 (82)
T ss_dssp E-
T ss_pred EC
Confidence 77
No 24
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.84 E-value=1.2e-08 Score=106.78 Aligned_cols=107 Identities=17% Similarity=0.314 Sum_probs=93.6
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.+|+++++.|+.++|.++|++..+||..|+.+.+.++.++.|++.++ +|++..+|+++ .+++...+++.|++..
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~----~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA----NNAEDVALLKHYNVLG 534 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC----CChhhHHHHHHcCCCC
Confidence 46789999999999999999999999999999999999999999998 59999999882 1345678999999999
Q ss_pred CceEEEEeCCCCceE--EEEeCCCChHHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 213 ~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~f 246 (346)
+|++.++++ .|+.+ .++.|..++++|++.|.+.
T Consensus 535 ~Pt~~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 535 LPTILFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCEEEEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999997 58774 5678999999998888763
No 25
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=98.81 E-value=7.3e-09 Score=80.89 Aligned_cols=53 Identities=32% Similarity=0.438 Sum_probs=43.4
Q ss_pred CeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEEE
Q 036413 290 LVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILVT 344 (346)
Q Consensus 290 ~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~~ 344 (346)
..|+|+||||||+|+ .++..|+|++.||+ |.+. ++.++||+|+||.++.+|++
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~~f~L~t~fPr--k~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGGPFTLMTPFPR--KVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCCCEEEEeCCCC--eECCcccccCCHHHCCCCCceEEEE
Confidence 579999999999998 12478999999995 4443 35688999999998888875
No 26
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.77 E-value=7.2e-09 Score=86.65 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=77.7
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC-
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS- 212 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~- 212 (346)
+|++|++.|++++|++||+++.+||..|+.|.+.+...+.+.. ++ .+||..-++.+. .+ ....|++..
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~-~~fv~v~vd~~~-----~~----~~~~~~~~g~ 75 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LS-HNFVMVNLEDDE-----EP----KDEEFSPDGG 75 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hc-CcEEEEEecCCC-----Cc----hhhhcccCCC
Confidence 7999999999999999999999999999999998777777665 57 799887655441 12 233566654
Q ss_pred -CceEEEEeCCCCceEEEE---eCCCChHHHHHHHHHHHH
Q 036413 213 -LPVVLVIDPITGEKMRKW---CGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 213 -~P~i~iidp~tge~l~~~---~G~~~~~~~i~~L~~fl~ 248 (346)
+|++++++| .|+.+.++ .|..+...|.+.|.....
T Consensus 76 ~vPt~~f~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 76 YIPRILFLDP-SGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred ccceEEEECC-CCCCchhhccCCCCccccccCCCHHHHHh
Confidence 999999998 59887753 455555666665555443
No 27
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.6e-07 Score=81.82 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=94.1
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC---------CCChHHH
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD---------DDDSECR 202 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~---------~~~~eg~ 202 (346)
+-+.-++...|.-.+|++|+-+-++.|.-|..|.||+...+.+++++. +||.++-.+... ++ ..+..-.
T Consensus 28 ~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i~~-skpv~f~~g~kee~~s~~ 105 (182)
T COG2143 28 NIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNISY-SKPVLFKVGDKEEKMSTE 105 (182)
T ss_pred hhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEecc-CcceEeecCceeeeecHH
Confidence 344567888899999999999999999999999999999999999999 999999998772 11 0122234
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
.+++.|++.++|++.+.| .+|+.+-.+.|.++|+.|+.-|.
T Consensus 106 ELa~kf~vrstPtfvFfd-k~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 106 ELAQKFAVRSTPTFVFFD-KTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred HHHHHhccccCceEEEEc-CCCCEEEecCCCCCHHHHHHHHH
Confidence 788999999999999999 58999999999999999997664
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.61 E-value=3.7e-07 Score=78.77 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=78.7
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI 219 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii 219 (346)
+.|...+|.++|++.++||..|+.|...+- .+.+-.+ ..+-|..++++ ..+...++..|++..+|++.|+
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~-~~~~~v~v~vd------~~~~~~~~~~~~V~~iPt~v~~ 83 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYG-DQVNFVMLNVD------NPKWLPEIDRYRVDGIPHFVFL 83 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhc-cCeeEEEEEcC------CcccHHHHHHcCCCCCCEEEEE
Confidence 445578999999999999999999854321 2333334 45666777777 5555678899999999999999
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 220 DPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
++ .|+.+..+.|..+.++|.+.|...+...+
T Consensus 84 ~~-~G~~v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 84 DR-EGNEEGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred CC-CCCEEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 96 69999999999888888888888887664
No 29
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.43 E-value=2.8e-06 Score=68.97 Aligned_cols=96 Identities=19% Similarity=0.340 Sum_probs=72.9
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.|++++..+ .+|++||++.++||..|+.+. +.+.++-++ .++.|..++.++ ..+...+++.|++..
T Consensus 5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~-----~~~~~~l~~~~~V~~ 71 (103)
T cd02985 5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDE-----NDSTMELCRREKIIE 71 (103)
T ss_pred HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCC-----ChHHHHHHHHcCCCc
Confidence 466666544 499999999999999999884 556555441 257888888873 445568999999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+|++.++ +.|+.+..+.| ..+.++.+.+..
T Consensus 72 ~Pt~~~~--~~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 72 VPHFLFY--KDGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred CCEEEEE--eCCeEEEEEeC-CCHHHHHHHHHh
Confidence 9998777 36999999999 456777766543
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.33 E-value=4.8e-06 Score=65.89 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=71.8
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
+|++.+.. ..+|.+||+++++||..|+.+...+ ..+.+.+. ..+.|..++.+ . ...+++.|++..+
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~-~~~~~~~vd~~------~--~~~l~~~~~i~~~ 67 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQ-GQFVLAKVNCD------A--QPQIAQQFGVQAL 67 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhC-CcEEEEEEecc------C--CHHHHHHcCCCCC
Confidence 45555543 3589999999999999999996532 34444556 67888888877 3 3568899999999
Q ss_pred ceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
|++.|++ .|+.+....|..+.+++...|
T Consensus 68 Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 68 PTVYLFA--AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred CEEEEEe--CCEEeeeecCCCCHHHHHHHh
Confidence 9999997 588888889988877665543
No 31
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=8e-06 Score=71.00 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=85.3
Q ss_pred ccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413 128 DLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGY 207 (346)
Q Consensus 128 ~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~ 207 (346)
.++-.-+..+--..=.+..+++||++|.+||.+|+.|-.-+ ++.+.+| . +.|-|+-++.++ --.++..
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l--~~~~~~~-~-g~~k~~kvdtD~--------~~ela~~ 110 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL--EELVSEY-A-GKFKLYKVDTDE--------HPELAED 110 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHH--HHHHHhh-c-CeEEEEEEcccc--------ccchHhh
Confidence 33445567777778889999999999999999999994322 3344444 3 689999998882 2568999
Q ss_pred cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
|.+...|+++++. +||++..+.|..+.+.+.+.+.+|+.
T Consensus 111 Y~I~avPtvlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 111 YEISAVPTVLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred cceeeeeEEEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999 59999999999998888888887764
No 32
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.25 E-value=3.2e-06 Score=87.25 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=86.0
Q ss_pred HHHHhhhcC--cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413 138 AKDVGSDEN--KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV 215 (346)
Q Consensus 138 A~~~Ak~~~--K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~ 215 (346)
.++.+..++ |++|||++.+||-.|+.+.|-|++++.|..-+. ++|+.+.|++ +.+++-..+.+.|++-..|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT----~~~p~~~~lLk~~~~~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVT----ANDPAITALLKRLGVFGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeec----CCCHHHHHHHHHcCCCCCCE
Confidence 444444444 599999999999999999999999999988887 9999999999 34677778889999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 216 VLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 216 i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+.+.++. |+....+.|+++.+.|++.|+++
T Consensus 538 ~~ff~~~-g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 538 YLFFGPQ-GSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEECCC-CCcCcCCcceecHHHHHHHHHHh
Confidence 9999985 54444488999999999999875
No 33
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.19 E-value=2e-05 Score=62.98 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=75.0
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
|+|.-....++ .+|.++|++.++||..|+.+.+-+ +.+.+-++ .++.+..++.+ .. ..++..|++..
T Consensus 1 ~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~-~~v~~~~id~d------~~--~~l~~~~~v~~ 67 (97)
T cd02949 1 GSYALRKLYHE-SDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFD-GAVHFVEIDID------ED--QEIAEAAGIMG 67 (97)
T ss_pred CchhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHH---HHHHHHhC-CceEEEEEECC------CC--HHHHHHCCCee
Confidence 56666666666 889999999999999999996543 44555566 67888888877 22 35788999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
+|++.|+. .|+.+....|..+.++|.+.|
T Consensus 68 vPt~~i~~--~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 68 TPTVQFFK--DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred ccEEEEEE--CCeEEEEEeCCccHHHHHHhh
Confidence 99999996 589999999988877766554
No 34
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.11 E-value=3e-05 Score=61.25 Aligned_cols=97 Identities=21% Similarity=0.368 Sum_probs=74.6
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.-+|++++.. .++.++|++.++||..|+.+...+ ..+.+-.. .++.|+.++.+ . ...+++.|++.
T Consensus 6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~v~~~~vd~~------~--~~~l~~~~~v~ 70 (103)
T PF00085_consen 6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYK-DNVKFAKVDCD------E--NKELCKKYGVK 70 (103)
T ss_dssp TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--SHHHHHHTTCS
T ss_pred HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccc-cccccchhhhh------c--cchhhhccCCC
Confidence 3456666655 579999999999999999994222 23334444 58999998877 2 37799999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.+|++.++. .|+.+....|..+.+.+.+.|.+
T Consensus 71 ~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 71 SVPTIIFFK--NGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp SSSEEEEEE--TTEEEEEEESSSSHHHHHHHHHH
T ss_pred CCCEEEEEE--CCcEEEEEECCCCHHHHHHHHHc
Confidence 999999998 48888899998898877776653
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=98.09 E-value=3e-05 Score=66.52 Aligned_cols=91 Identities=13% Similarity=0.227 Sum_probs=70.8
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
+.+++|.++|+++.+||..|+.+.. ++ ..+.+-.+ .++.|..++.+ .. ..++..|++..+|++.++.
T Consensus 48 ~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~-~~v~~~~vd~~------~~--~~l~~~~~V~~~Ptlii~~- 114 (139)
T PRK10996 48 LLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERS-GKVRFVKVNTE------AE--RELSARFRIRSIPTIMIFK- 114 (139)
T ss_pred HHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhC-CCeEEEEEeCC------CC--HHHHHhcCCCccCEEEEEE-
Confidence 3456899999999999999999854 33 33444456 68888888777 32 4688999999999998886
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
.|+.+..+.|..+.+.|.+.|.+.
T Consensus 115 -~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 115 -NGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred -CCEEEEEEcCCCCHHHHHHHHHHh
Confidence 699999999988877776666543
No 36
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.06 E-value=2.5e-05 Score=62.13 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=69.1
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.+|++++ ++++.++|++.++||..|+.+...+ ..+.+.+. ...++|..++.+ ..+...++..|++.
T Consensus 8 ~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~------~~~~~~~~~~~~i~ 74 (104)
T cd02997 8 EDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCT------KPEHDALKEEYNVK 74 (104)
T ss_pred HhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECC------CCccHHHHHhCCCc
Confidence 3455544 4567999999999999999996554 23333333 145788888887 54567789999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
.+|++.+.. .|+.+..+.|..+.+.+++
T Consensus 75 ~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~ 102 (104)
T cd02997 75 GFPTFKYFE--NGKFVEKYEGERTAEDIIE 102 (104)
T ss_pred cccEEEEEe--CCCeeEEeCCCCCHHHHHh
Confidence 999987665 5888888899888776654
No 37
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.04 E-value=3.5e-05 Score=63.40 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=70.5
Q ss_pred cccCHHHHHHHh--hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 131 FNGSFEKAKDVG--SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 131 ~~gsf~~A~~~A--k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
|.-+.++..+.+ +..+|.+||+++++||..|+.+.+.+. .+.+-++..++.|..++.+ .. ..++..|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~---~l~~~~~~~~v~~~~vd~d------~~--~~l~~~~ 75 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWK---EVIQELEPLGVGIATVNAG------HE--RRLARKL 75 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHH---HHHHHHHhcCceEEEEecc------cc--HHHHHHc
Confidence 344445554444 347899999999999999999965422 3333333136888888776 32 4678999
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
++.++|++.++. .|+.+....|..+.+.+.+.|
T Consensus 76 ~V~~~Pt~~i~~--~g~~~~~~~G~~~~~~l~~~i 108 (111)
T cd02963 76 GAHSVPAIVGII--NGQVTFYHDSSFTKQHVVDFV 108 (111)
T ss_pred CCccCCEEEEEE--CCEEEEEecCCCCHHHHHHHH
Confidence 999999999996 688777888977766554443
No 38
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.04 E-value=2.4e-05 Score=63.98 Aligned_cols=97 Identities=24% Similarity=0.252 Sum_probs=70.9
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHh-hcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCG-YYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~-~y~~~ 211 (346)
.+|+ ++..|++.+|.+||+++++||..|+.|... | ..+.+.++..+|.+..++.+ . +...++. .|++.
T Consensus 9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d------~-~~~~~~~~~~~v~ 77 (109)
T cd02993 9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNAD------G-EQREFAKEELQLK 77 (109)
T ss_pred HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECC------c-cchhhHHhhcCCC
Confidence 3454 666778889999999999999999999655 3 34555666236999998877 3 2245664 69999
Q ss_pred CCceEEEEeCCCCceEEEEeCC-CChHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGM-VDPVSLLE 241 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~-~~~~~~i~ 241 (346)
.||++.++++. +.....+.|. .+.+.+++
T Consensus 78 ~~Pti~~f~~~-~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 78 SFPTILFFPKN-SRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred cCCEEEEEcCC-CCCceeccCCCCCHHHHHh
Confidence 99999999864 4456667773 57766543
No 39
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.01 E-value=4.3e-05 Score=60.28 Aligned_cols=93 Identities=15% Similarity=0.369 Sum_probs=68.9
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
+|++++..+. +|.++|++..+||..|+.+.+. | +.+.+-+. .++.|+.++.+ . -..++..|++..+
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~-l--~~l~~~~~-~~i~~~~vd~~------~--~~~~~~~~~i~~~ 69 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQV-F--EELAKEAF-PSVLFLSIEAE------E--LPEISEKFEITAV 69 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHH-H--HHHHHHhC-CceEEEEEccc------c--CHHHHHhcCCccc
Confidence 5677777775 8999999999999999999542 2 22322335 58888888766 2 2457889999999
Q ss_pred ceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
|++.++. .|+.+.+..|. .++++.+.|
T Consensus 70 Pt~~~~~--~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 70 PTFVFFR--NGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred cEEEEEE--CCEEEEEEeCC-CHHHHHHhh
Confidence 9999996 58888888884 455555443
No 40
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.5e-05 Score=83.55 Aligned_cols=85 Identities=15% Similarity=0.309 Sum_probs=70.1
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHH---hhcC-C
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVC---GYYK-L 210 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~---~~y~-~ 210 (346)
++|...||+++|+|||.|--.+|-.||+|.++.+.|++|.++|| +|||-..+|-++ -|+= ..|. +... -
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN-~~FV~IKVDREE-----RPDvD~~Ym~~~q~~tG~ 106 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN-ENFVPVKVDREE-----RPDVDSLYMNASQAITGQ 106 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH-hCceeeeEChhh-----ccCHHHHHHHHHHHhccC
Confidence 68999999999999999999999999999999999999999999 999999987763 4431 1122 2221 2
Q ss_pred CCCceEEEEeCCCCceE
Q 036413 211 DSLPVVLVIDPITGEKM 227 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l 227 (346)
...|.-+++.| .|+-+
T Consensus 107 GGWPLtVfLTP-d~kPF 122 (667)
T COG1331 107 GGWPLTVFLTP-DGKPF 122 (667)
T ss_pred CCCceeEEECC-CCcee
Confidence 57999999999 57755
No 41
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.97 E-value=5e-05 Score=67.30 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=72.8
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-------------------HH
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-------------------RK 203 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-------------------~~ 203 (346)
...+|.++|++..+||..|+.+. +.+.++.+ .++.++.++.++ . ..+. ..
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~-~~~~vi~V~~~~--~--~~~~~~~~~~~~~~f~~v~~D~~~~ 128 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAK-DGLPIVGVDYKD--Q--SQNALKFLKELGNPYQAILIDPNGK 128 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHH-cCCEEEEEECCC--C--hHHHHHHHHHcCCCCceEEECCCCc
Confidence 44689999999999999999873 55677777 788888887651 0 1111 23
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+...|++..+|+..+||+ .|+.+.++.|.++.+++.+.|.+++.
T Consensus 129 ~~~~~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 129 LGLDLGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred hHHhcCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence 445677778999999997 59999999999999999999988874
No 42
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.91 E-value=6.7e-05 Score=60.48 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=70.6
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++. +.+|.+||+++++||..|+.+...+ ..+.+-++ ..+.|..++.+ ..+...++..|++
T Consensus 6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~-~~~~~~~v~~~------~~~~~~~~~~~~i 72 (109)
T cd03002 6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELD-GLVQVAAVDCD------EDKNKPLCGKYGV 72 (109)
T ss_pred chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhc-CCceEEEEecC------ccccHHHHHHcCC
Confidence 3456776664 4578899999999999999986432 23444455 66778888887 5556789999999
Q ss_pred CCCceEEEEeCCC---CceEEEEeCCCChHHHHH
Q 036413 211 DSLPVVLVIDPIT---GEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 211 ~~~P~i~iidp~t---ge~l~~~~G~~~~~~~i~ 241 (346)
..+|++.++.+.. +.....+.|..+.+.+++
T Consensus 73 ~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~ 106 (109)
T cd03002 73 QGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVD 106 (109)
T ss_pred CcCCEEEEEeCCCcccccccccccCccCHHHHHH
Confidence 9999999999632 124455678777665543
No 43
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.89 E-value=8e-05 Score=62.00 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=72.7
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH-hhc
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC-GYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~-~~y 208 (346)
+-..+|+++... .++++++||+++.+||..|+.|.-. =+.+.+.++ ++..|..++.+ ... .++ ..|
T Consensus 14 l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~---~~~la~~~~-~~v~~~~Vd~d------~~~--~l~~~~~ 80 (113)
T cd03006 14 FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQE---FEQVAQKLS-DQVLFVAINCW------WPQ--GKCRKQK 80 (113)
T ss_pred echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHH---HHHHHHHhc-CCeEEEEEECC------CCh--HHHHHhc
Confidence 446778887554 7888999999999999999998421 124444456 67888888877 332 466 589
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
++..||++.+.- .|+......|..+.+.++.
T Consensus 81 ~I~~~PTl~lf~--~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 81 HFFYFPVIHLYY--RSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred CCcccCEEEEEE--CCccceEEeCCCCHHHHHh
Confidence 999999999884 5777777889888776654
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.85 E-value=8.2e-05 Score=57.84 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh--ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413 138 AKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI--RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV 215 (346)
Q Consensus 138 A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i--~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~ 215 (346)
....+.++++.++|++.+++|..|+.+... | ..+.+-+ + .++.|..++.+ . ...++..|++..+|+
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~i~~~Pt 74 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPE-Y--EKLAKELKGD-GKVVVAKVDCT------A--NNDLCSEYGVRGYPT 74 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHH-H--HHHHHHhccC-CceEEEEeecc------c--hHHHHHhCCCCCCCE
Confidence 344455556699999999999999999543 3 2344445 5 78888888766 3 467899999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 216 VLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 216 i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
+.++++. |..+....|..+++++.+
T Consensus 75 ~~~~~~~-~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 75 IKLFPNG-SKEPVKYEGPRTLESLVE 99 (101)
T ss_pred EEEEcCC-CcccccCCCCcCHHHHHh
Confidence 9999973 466666778777776654
No 45
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00019 Score=59.23 Aligned_cols=93 Identities=12% Similarity=0.234 Sum_probs=76.0
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
..+|+.....+...+|.++|++.++||.+|..+ .|.+.++-. -.+-+|+.+|++ . -..+++.|++
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvd------e--~~~~~~~~~V 72 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVD------E--LEEVAKEFNV 72 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEecc------c--CHhHHHhcCc
Confidence 456788888888889999999999999999998 567777665 124799999999 5 7889999999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
...|++.++- .|+.+..+.|. ++.++.+
T Consensus 73 ~~~PTf~f~k--~g~~~~~~vGa-~~~~l~~ 100 (106)
T KOG0907|consen 73 KAMPTFVFYK--GGEEVDEVVGA-NKAELEK 100 (106)
T ss_pred eEeeEEEEEE--CCEEEEEEecC-CHHHHHH
Confidence 9999999994 69999998884 3443333
No 46
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.80 E-value=0.0002 Score=54.31 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 135 FEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 135 f~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
|+.++... +.+||++.+++|..|+.+.+ .+.++.+ ..++.|..++.+ . ...++..|++..+
T Consensus 3 ~~~~~~~~----~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~------~--~~~~~~~~~v~~~ 64 (93)
T cd02947 3 FEELIKSA----KPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVD------E--NPELAEEYGVRSI 64 (93)
T ss_pred hHHHHhcC----CcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECC------C--ChhHHHhcCcccc
Confidence 44444444 89999999999999998854 3333333 168888888777 3 4568889999999
Q ss_pred ceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
|++.++. .|+.+..+.|..+.+.+.+.|
T Consensus 65 P~~~~~~--~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 65 PTFLFFK--NGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred cEEEEEE--CCEEEEEEecCCCHHHHHHHh
Confidence 9999997 478888889977766555543
No 47
>PHA02278 thioredoxin-like protein
Probab=97.80 E-value=0.00019 Score=58.68 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=62.6
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
++++.++|+++.+||.+|+.|. +.+.++-.+ ...-|+.++++. + .-+...++..|++.+.|++++..
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~------p~l~~l~~~~~~~~~~~~vdvd~---~-~~d~~~l~~~~~I~~iPT~i~fk- 80 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILK------SVIPMFQESGDIKKPILTLNLDA---E-DVDREKAVKLFDIMSTPVLIGYK- 80 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHH------HHHHHHHhhhcCCceEEEEECCc---c-ccccHHHHHHCCCccccEEEEEE-
Confidence 5889999999999999999994 444444330 223366677762 0 11145589999999999999998
Q ss_pred CCCceEEEEeCCCChHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLL 240 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i 240 (346)
.|+.+.+..|..+++.+.
T Consensus 81 -~G~~v~~~~G~~~~~~l~ 98 (103)
T PHA02278 81 -DGQLVKKYEDQVTPMQLQ 98 (103)
T ss_pred -CCEEEEEEeCCCCHHHHH
Confidence 599999999987776543
No 48
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.79 E-value=0.00019 Score=62.30 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=74.3
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
...|++|+..+ .+|+++|++..+||.+|..| +|.+.++-.+ +...|+.+|++ . ...++..|+
T Consensus 11 ~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m------~p~l~~la~~~~~~~~~~kVDVD------e--~~dla~~y~ 74 (142)
T PLN00410 11 GWAVDQAILAE--EERLVVIRFGHDWDETCMQM------DEVLASVAETIKNFAVIYLVDIT------E--VPDFNTMYE 74 (142)
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCChhHHHH------HHHHHHHHHHcCCceEEEEEECC------C--CHHHHHHcC
Confidence 34567777644 78999999999999999998 4444444430 33566999988 3 357999999
Q ss_pred CCCCceEEEEeCCCCc-eEEEEeC--------CCChHHHHHHHHHHHHcC
Q 036413 210 LDSLPVVLVIDPITGE-KMRKWCG--------MVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 210 ~~~~P~i~iidp~tge-~l~~~~G--------~~~~~~~i~~L~~fl~~~ 250 (346)
+.+.|.+.++- +.|+ ++....| ..+.++|++.+..++...
T Consensus 75 I~~~~t~~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 75 LYDPCTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred ccCCCcEEEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 99776666454 3577 6666677 578889999988887543
No 49
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.79 E-value=0.00021 Score=56.39 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=68.3
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
+|++++. +++.++|+++++||..|+.+ ...| +.+.+.++ . ++.+...+.+ +...++..|++.
T Consensus 5 ~~~~~~~----~~~~~~i~f~~~~C~~c~~~-~~~~--~~~~~~~~-~~~~~~~~~~d~~--------~~~~~~~~~~i~ 68 (102)
T TIGR01126 5 NFDDIVL----SNKDVLVEFYAPWCGHCKNL-APEY--EKLAKELK-GDPDIVLAKVDAT--------AEKDLASRFGVS 68 (102)
T ss_pred hHHHHhc----cCCcEEEEEECCCCHHHHhh-ChHH--HHHHHHhc-cCCceEEEEEEcc--------chHHHHHhCCCC
Confidence 4555553 79999999999999999998 3444 34555555 4 5777666555 346788999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.+|++.++++ |+.+....|..+.+.|...|.+
T Consensus 69 ~~P~~~~~~~--~~~~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 69 GFPTIKFFPK--GKKPVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred cCCEEEEecC--CCcceeecCCCCHHHHHHHHHh
Confidence 9999999996 3436678898787765555443
No 50
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.79 E-value=0.0003 Score=55.15 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=66.8
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT 223 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t 223 (346)
..+|.++|+++++||..|..+...+ ..+.+-++ .++.|+.++.+ .. ..+++.|++..+|++.++. .
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~~P~~~~~~--~ 77 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYE-GKVKFVKLNVD------EN--PDIAAKYGIRSIPTLLLFK--N 77 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhc-CCeEEEEEECC------CC--HHHHHHcCCCcCCEEEEEe--C
Confidence 4478999999999999999985432 24444446 67888888877 32 3578889999999999995 5
Q ss_pred CceEEEEeCCCChHHHHHHHHH
Q 036413 224 GEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 224 ge~l~~~~G~~~~~~~i~~L~~ 245 (346)
|+.+....|..+.+++...|.+
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~ 99 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINK 99 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHh
Confidence 8877777888877766666554
No 51
>PRK09381 trxA thioredoxin; Provisional
Probab=97.78 E-value=0.00031 Score=56.92 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=68.4
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
+|.+... +.+++++|+++++||..|+.+...+ +.+.+-.+ .++.|..++.+ .. ..++..|++..+
T Consensus 12 ~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~~ 76 (109)
T PRK09381 12 SFDTDVL---KADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------QN--PGTAPKYGIRGI 76 (109)
T ss_pred hHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhC-CCcEEEEEECC------CC--hhHHHhCCCCcC
Confidence 4555443 4588999999999999999884222 12333344 56777787777 32 346788999999
Q ss_pred ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
|++.++. .|+.+....|..+.+++...|.+.
T Consensus 77 Pt~~~~~--~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFK--NGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEe--CCeEEEEecCCCCHHHHHHHHHHh
Confidence 9999995 688888888988877666555544
No 52
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.77 E-value=0.00035 Score=56.39 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=62.6
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
+.+.+|.++|+++++||..|+.+...+ +.+.+-.+..+..|..++.+ . ...++.|++..+|++.++.
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l---~~~~~~~~~~~~~~~~vd~d------~---~~~~~~~~v~~~Pt~~~~~- 79 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSLF---KKIKNELGDDLLHFATAEAD------T---IDTLKRYRGKCEPTFLFYK- 79 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHHH---HHHHHHcCCCcEEEEEEeCC------C---HHHHHHcCCCcCcEEEEEE-
Confidence 335689999999999999999985432 22333333123456666555 3 3578999999999988886
Q ss_pred CCCceEEEEeCCCChHHHHHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
.|+.+....|. +++.+.+.|.
T Consensus 80 -~g~~~~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 80 -NGELVAVIRGA-NAPLLNKTIT 100 (102)
T ss_pred -CCEEEEEEecC-ChHHHHHHHh
Confidence 69999998894 7776666554
No 53
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.75 E-value=0.00019 Score=57.95 Aligned_cols=96 Identities=10% Similarity=0.151 Sum_probs=66.6
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
+++++.+.+++ ++.+||++.++||..|+.+.. +|. .+.+-++ ..++.+...+.+ . ...+++.|++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~------~--~~~~~~~~~I~ 71 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDAT------A--YSSIASEFGVR 71 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECc------c--CHhHHhhcCCc
Confidence 56677777655 678899999999999999965 332 2333332 024777777766 2 24678899999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
.+|++.++. .| .+....|..+.+++.+.+.
T Consensus 72 ~~Pt~~l~~--~~-~~~~~~G~~~~~~l~~~~~ 101 (104)
T cd03000 72 GYPTIKLLK--GD-LAYNYRGPRTKDDIVEFAN 101 (104)
T ss_pred cccEEEEEc--CC-CceeecCCCCHHHHHHHHH
Confidence 999999995 24 3455788777666555444
No 54
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.71 E-value=7.4e-05 Score=61.54 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=62.5
Q ss_pred hhhcCcEEEEEecCCCCccccccccccC----------------CCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTW----------------ADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC 205 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw----------------~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~ 205 (346)
+...+|.++|++.+++|..|+.+.+.+= ..+.+.++++ ++-+-|....+ +...++
T Consensus 16 ~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~d--------~~~~~~ 86 (123)
T cd03011 16 ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQ-KKGYGFPVIND--------PDGVIS 86 (123)
T ss_pred HHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHH-HcCCCccEEEC--------CCcHHH
Confidence 3345699999999999999998842221 1244445554 33333333222 124688
Q ss_pred hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
..|++...|++.|||+ .| ......|..+++++.+++
T Consensus 87 ~~~~i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 87 ARWGVSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred HhCCCCcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence 8899999999999997 46 777889999998887654
No 55
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.68 E-value=0.00024 Score=57.63 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=64.4
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-----CcEEEEEeecCCCCCCCChHHHHHHh
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-----SNFIFWQVYDDDDDDDDDSECRKVCG 206 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-----~nFVfw~~~~~~~~~~~~~eg~~~~~ 206 (346)
..+|++++ +.++++||+++++||..|+.|... |. .+.+.+++ .++.|..++.+ .. ..++.
T Consensus 8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d------~~--~~l~~ 72 (108)
T cd02996 8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCD------KE--SDIAD 72 (108)
T ss_pred HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECC------CC--HHHHH
Confidence 44677655 457899999999999999999643 22 12222220 14777788777 33 46899
Q ss_pred hcCCCCCceEEEEeCCCCce-EEEEeCCCChHHHHH
Q 036413 207 YYKLDSLPVVLVIDPITGEK-MRKWCGMVDPVSLLE 241 (346)
Q Consensus 207 ~y~~~~~P~i~iidp~tge~-l~~~~G~~~~~~~i~ 241 (346)
.|++.+||++.+.- .|+. .....|..+.+++++
T Consensus 73 ~~~v~~~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~ 106 (108)
T cd02996 73 RYRINKYPTLKLFR--NGMMMKREYRGQRSVEALAE 106 (108)
T ss_pred hCCCCcCCEEEEEe--CCcCcceecCCCCCHHHHHh
Confidence 99999999999985 4763 456678777665543
No 56
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.67 E-value=0.00022 Score=57.20 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=66.9
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++... ..++.++|++.++||..|+.|.. +| +.+.+-++ .++.|..++.+ . ...+++.|++.
T Consensus 8 ~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~-~~~~~~~vd~~------~--~~~~~~~~~i~ 72 (104)
T cd03004 8 PEDFPELVL---NRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALK-GKVKVGSVDCQ------K--YESLCQQANIR 72 (104)
T ss_pred HHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhc-CCcEEEEEECC------c--hHHHHHHcCCC
Confidence 345666544 45679999999999999999942 22 22223334 56778888777 3 34688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCC-hHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVD-PVSLLE 241 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~-~~~~i~ 241 (346)
.||++.++.. .|+.+....|..+ .+++.+
T Consensus 73 ~~Pt~~~~~~-g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 73 AYPTIRLYPG-NASKYHSYNGWHRDADSILE 102 (104)
T ss_pred cccEEEEEcC-CCCCceEccCCCCCHHHHHh
Confidence 9999999985 3477888889765 766543
No 57
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.63 E-value=0.00018 Score=58.16 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=60.5
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
|...+|.+||+++.+||..|+.+.. +| +.+.+..+ ++.|..++.+ . +-..++..|++..||++.+++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p-~l--~~la~~~~--~~~~~~vd~~------~-~~~~l~~~~~V~~~PT~~lf~~ 81 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRP-HF--NALSSMFP--QIRHLAIEES------S-IKPSLLSRYGVVGFPTILLFNS 81 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhH-HH--HHHHHHhc--cCceEEEECC------C-CCHHHHHhcCCeecCEEEEEcC
Confidence 3567999999999999999998832 11 12233333 4666666544 1 2347889999999999999984
Q ss_pred CCCceEEEEeCCCChHHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~ 241 (346)
| .+....|..+.+.+++
T Consensus 82 --g-~~~~~~G~~~~~~l~~ 98 (100)
T cd02999 82 --T-PRVRYNGTRTLDSLAA 98 (100)
T ss_pred --C-ceeEecCCCCHHHHHh
Confidence 5 6677889877766544
No 58
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.62 E-value=0.00046 Score=61.88 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=69.8
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HH-------------------H
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CR-------------------K 203 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~-------------------~ 203 (346)
..+|+++||+..+||..|+..- +.+.++-+ .++.++.++.++ +.+ .. .
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~-~~~~vi~v~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~ 133 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSA-QGIRVVGMNYKD-----DRQKAISWLKELGNPYALSLFDGDGM 133 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHH-cCCEEEEEECCC-----CHHHHHHHHHHcCCCCceEEEcCCcc
Confidence 3689999999999999998763 45566666 678788887652 211 22 2
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
+...|++..+|+..|||+ .|+...+..|.++.+++-+.+...+..
T Consensus 134 ~~~~~gv~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 134 LGLDLGVYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred HHHhcCCCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 334677888999999997 599899999988888877777776644
No 59
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.60 E-value=0.00034 Score=55.91 Aligned_cols=90 Identities=26% Similarity=0.410 Sum_probs=66.9
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.+|++.. .++|.+||++.++||..|+.|.. +|. .+.+-++ .++.|..++.+ .. ..++..|++..
T Consensus 9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~ 72 (101)
T cd03003 9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMD-GVIRIGAVNCG------DD--RMLCRSQGVNS 72 (101)
T ss_pred hhHHHHh----cCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhc-CceEEEEEeCC------cc--HHHHHHcCCCc
Confidence 3566655 34589999999999999999843 221 2444455 77888888888 32 46889999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLL 240 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i 240 (346)
||++.++. .|+.+....|..+.+.+.
T Consensus 73 ~Pt~~~~~--~g~~~~~~~G~~~~~~l~ 98 (101)
T cd03003 73 YPSLYVFP--SGMNPEKYYGDRSKESLV 98 (101)
T ss_pred cCEEEEEc--CCCCcccCCCCCCHHHHH
Confidence 99998884 588777788877776554
No 60
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.59 E-value=0.00069 Score=64.76 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=79.8
Q ss_pred CcccccccCHHHHHH------HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC--
Q 036413 126 PVDLMFNGSFEKAKD------VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD-- 197 (346)
Q Consensus 126 P~~l~~~gsf~~A~~------~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~-- 197 (346)
|++-+..-.|.++.. .+.-.+|++||++..+||..|+.+ .+.+.++-++-++.+..++++......
T Consensus 140 P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp 213 (271)
T TIGR02740 140 PVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFFKSDCPYCHQQ------APILQAFEDRYGIEVLPVSVDGGPLPGFP 213 (271)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCccHHHH------hHHHHHHHHHcCcEEEEEeCCCCccccCC
Confidence 344344444544433 234458999999999999999987 577777776335777777776200000
Q ss_pred -ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 198 -DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 198 -~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
......++..|++...|++.++++.+|+...+..|.++.+++.+.+.....
T Consensus 214 ~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 214 NARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 000123678899999999999998666665566799999999888877654
No 61
>PTZ00051 thioredoxin; Provisional
Probab=97.57 E-value=0.00057 Score=53.97 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=62.0
Q ss_pred HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413 137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV 215 (346)
Q Consensus 137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~ 215 (346)
+......+.+|.++|++.++||..|+.+. +.+.++.+ -.++.|..++.+ +...++..|++..+|+
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~------~~l~~l~~~~~~~~~~~vd~~--------~~~~~~~~~~v~~~Pt 74 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIA------PFYEECSKEYTKMVFVKVDVD--------ELSEVAEKENITSMPT 74 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHh------HHHHHHHHHcCCcEEEEEECc--------chHHHHHHCCCceeeE
Confidence 34455567899999999999999999984 33344333 024677776655 2457899999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHH
Q 036413 216 VLVIDPITGEKMRKWCGMVDPVS 238 (346)
Q Consensus 216 i~iidp~tge~l~~~~G~~~~~~ 238 (346)
+.++. .|+.+..+.|. .+++
T Consensus 75 ~~~~~--~g~~~~~~~G~-~~~~ 94 (98)
T PTZ00051 75 FKVFK--NGSVVDTLLGA-NDEA 94 (98)
T ss_pred EEEEe--CCeEEEEEeCC-CHHH
Confidence 87774 68999899995 4443
No 62
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.55 E-value=0.00064 Score=54.15 Aligned_cols=92 Identities=15% Similarity=0.318 Sum_probs=63.5
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++++ +++| ||+++++||..|+.+... |. .+.+..+..++.|..++.+ .. ..++..|++.
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~------~~--~~~~~~~~i~ 70 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVT------QE--PGLSGRFFVT 70 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEcc------CC--HhHHHHcCCc
Confidence 45677654 2455 599999999999998543 22 2233333136888888877 33 3478899999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
.||++.++. .|+ +....|..+.+++.+.|
T Consensus 71 ~~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i 99 (101)
T cd02994 71 ALPTIYHAK--DGV-FRRYQGPRDKEDLISFI 99 (101)
T ss_pred ccCEEEEeC--CCC-EEEecCCCCHHHHHHHH
Confidence 999998873 577 46678977776665544
No 63
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.52 E-value=0.00073 Score=56.43 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=72.8
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-Cc-EEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SN-FIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~n-FVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
..|++|+..| ++|.++|.+..+||.+|..| +|.+.++-++ .+ .+|+.+|+++ -..++..|.+
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~m------dp~l~ela~~~~~~~~f~kVDVDe--------v~dva~~y~I 66 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQL------DDILSKTSHDLSKMASIYLVDVDK--------VPVYTQYFDI 66 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHH------HHHHHHHHHHccCceEEEEEeccc--------cHHHHHhcCc
Confidence 4678888888 89999999999999999999 4555555540 15 8899999982 3559999999
Q ss_pred CCCceEEEEeCCCCceEEE---------EeCCC-ChHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRK---------WCGMV-DPVSLLEDLLSF 246 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~---------~~G~~-~~~~~i~~L~~f 246 (346)
..-|+.+++- .|+-|++ |.|.+ +.++||.-+...
T Consensus 67 ~amPtfvffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 67 SYIPSTIFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred eeCcEEEEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 9999999776 3665543 45544 567888776543
No 64
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00014 Score=68.52 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=42.5
Q ss_pred CeeEEEEEcCCCccc---------------------cCC-cceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413 290 LVCRIGVRLPDGQEA---------------------NQT-RQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 290 ~~trIqiRlpdG~ri---------------------~~~-~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~ 343 (346)
..||||||||||+.+ .++ .+|.|.+.||.. --..++...+|++.||.++++++
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~-tf~edD~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRV-TFTEDDELKPLQELDLVPSAVLI 283 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCce-ecccccccccHHHhccccchhee
Confidence 799999999999998 233 599999999953 23445667799999999887764
No 65
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.51 E-value=0.00047 Score=54.63 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=65.4
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.+|++++. +.+|.+||+++++||..|+.|...+ ..+.+.++. .++.|..++.+ .. .++..|.+.
T Consensus 8 ~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~------~~---~~~~~~~~~ 72 (104)
T cd02995 8 KNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDAT------AN---DVPSEFVVD 72 (104)
T ss_pred hhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCc------ch---hhhhhccCC
Confidence 34555443 4468999999999999999995433 555666661 26999998877 33 367778889
Q ss_pred CCceEEEEeCCCCc--eEEEEeCCCChHHHHH
Q 036413 212 SLPVVLVIDPITGE--KMRKWCGMVDPVSLLE 241 (346)
Q Consensus 212 ~~P~i~iidp~tge--~l~~~~G~~~~~~~i~ 241 (346)
.+|++.++.+ |+ ......|..+...|++
T Consensus 73 ~~Pt~~~~~~--~~~~~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 73 GFPTILFFPA--GDKSNPIKYEGDRTLEDLIK 102 (104)
T ss_pred CCCEEEEEcC--CCcCCceEccCCcCHHHHHh
Confidence 9999999974 44 4555678777665544
No 66
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.51 E-value=0.00048 Score=54.59 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=65.3
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc----cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR----ASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~----~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
+|++ ..+..+|.++|+++++||..|+.+. +.+.++.+ ..++.+...+.+ .. ...++..|+
T Consensus 9 ~~~~---~~~~~~~~~~v~f~a~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~id~~------~~-~~~~~~~~~ 72 (105)
T cd02998 9 NFDK---VVGDDKKDVLVEFYAPWCGHCKNLA------PEYEKLAAVFANEDDVVIAKVDAD------EA-NKDLAKKYG 72 (105)
T ss_pred cHHH---HhcCCCCcEEEEEECCCCHHHHhhC------hHHHHHHHHhCCCCCEEEEEEECC------Cc-chhhHHhCC
Confidence 4555 3344578999999999999999884 33333332 146888888777 32 457899999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
+..+|++.++.+ .|+....+.|..+.+.+.+
T Consensus 73 i~~~P~~~~~~~-~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 73 VSGFPTLKFFPK-GSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred CCCcCEEEEEeC-CCCCccccCCccCHHHHHh
Confidence 999999999986 3456666778777665543
No 67
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.48 E-value=0.0013 Score=55.42 Aligned_cols=101 Identities=9% Similarity=0.178 Sum_probs=69.0
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC---ChHHHHHHhhcCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD---DSECRKVCGYYKL 210 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~---~~eg~~~~~~y~~ 210 (346)
+.++..+. -+.++..+||+..+||.+|+.| .|.+.++.++.+.-++-++++.+..-+ ..+-..+...|+.
T Consensus 12 t~~~~~~~-i~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 12 TVVRALEA-LDKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred CHHHHHHH-HHcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 44443333 3568889999999999999999 688888887344557777777311001 1244567777765
Q ss_pred C----CCceEEEEeCCCCceEEEEeCC-CChHHHHHHHHHHH
Q 036413 211 D----SLPVVLVIDPITGEKMRKWCGM-VDPVSLLEDLLSFM 247 (346)
Q Consensus 211 ~----~~P~i~iidp~tge~l~~~~G~-~~~~~~i~~L~~fl 247 (346)
. ..|+++++. .|+.+.++.|. .+. ++|..|+
T Consensus 85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~----~~l~~~~ 120 (122)
T TIGR01295 85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTA----QELQDIA 120 (122)
T ss_pred cccCCCCCEEEEEe--CCeEEEEEeCCCCCH----HHHHHHh
Confidence 4 499999998 59999999894 444 4455444
No 68
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.48 E-value=0.00088 Score=58.43 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=65.9
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHHHH
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRKVC 205 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~~~ 205 (346)
.+|+++|++.+++|..|+...+.+ ++...++-+ .++.++.++.+. +.+ -..++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~-~~~~vi~i~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~ 131 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKE-KGVEIIAVNVDE-----TELAVKNFVNRYGLTFPVAIDKGRQVI 131 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhc-CCeEEEEEEcCC-----CHHHHHHHHHHhCCCceEEECCcchHH
Confidence 578899999999999997753221 122333334 567788887762 211 24667
Q ss_pred hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+.|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+
T Consensus 132 ~~~~v~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 132 DAYGVGPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred HHcCCCCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence 8899999999999997 69999899998888777666653
No 69
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.42 E-value=0.001 Score=55.61 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=57.4
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI 222 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~ 222 (346)
.++.++|+++.+||.+|+.| .+.+.++-.+ +...|+.++++ . ...++..|++.+.|++.++-
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m------~P~le~la~~~~~~v~f~kVDvD------~--~~~la~~~~V~~iPTf~~fk-- 76 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQM------DEVLAKIAEDVSNFAVIYLVDID------E--VPDFNKMYELYDPPTVMFFF-- 76 (114)
T ss_pred CCCEEEEEEECCCChhHHHH------HHHHHHHHHHccCceEEEEEECC------C--CHHHHHHcCCCCCCEEEEEE--
Confidence 68899999999999999999 4555555541 34568898888 3 24799999999999999998
Q ss_pred CCceEEEEeC
Q 036413 223 TGEKMRKWCG 232 (346)
Q Consensus 223 tge~l~~~~G 232 (346)
.|+.+....|
T Consensus 77 ~G~~v~~~~G 86 (114)
T cd02954 77 RNKHMKIDLG 86 (114)
T ss_pred CCEEEEEEcC
Confidence 5898877655
No 70
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.41 E-value=0.0012 Score=52.20 Aligned_cols=90 Identities=21% Similarity=0.360 Sum_probs=62.9
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
.+|++++. .+ .+||+++++||..|+.+... |. .+.+-.+. .++.|..++.+ .. ..+++.|++
T Consensus 8 ~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~-~~--~~~~~~~~~~~~~~~~~vd~~------~~--~~~~~~~~v 71 (102)
T cd03005 8 DNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPT-WE--QLAKKFNNENPSVKIAKVDCT------QH--RELCSEFQV 71 (102)
T ss_pred HHHHHHhh----cC-CEEEEEECCCCHHHHHhCHH-HH--HHHHHHhccCCcEEEEEEECC------CC--hhhHhhcCC
Confidence 35666663 23 39999999999999998532 21 23333331 26888887776 32 367889999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLL 240 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i 240 (346)
..+|++.++. .|..+....|..+.+++.
T Consensus 72 ~~~Pt~~~~~--~g~~~~~~~G~~~~~~l~ 99 (102)
T cd03005 72 RGYPTLLLFK--DGEKVDKYKGTRDLDSLK 99 (102)
T ss_pred CcCCEEEEEe--CCCeeeEeeCCCCHHHHH
Confidence 9999999995 477777788987766543
No 71
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.41 E-value=0.001 Score=54.64 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=60.1
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..|.+....+. .+++++|+++++||..|+.|. +.+.++.. -.+..|..++.+ .. .+++.|++.
T Consensus 12 ~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~------~~l~~la~~~~~v~f~~vd~~------~~---~l~~~~~i~ 75 (113)
T cd02957 12 KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILD------SHLEELAAKYPETKFVKINAE------KA---FLVNYLDIK 75 (113)
T ss_pred HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHH------HHHHHHHHHCCCcEEEEEEch------hh---HHHHhcCCC
Confidence 34555554322 358999999999999999884 44444444 013456677666 32 889999999
Q ss_pred CCceEEEEeCCCCceEEEEeCC
Q 036413 212 SLPVVLVIDPITGEKMRKWCGM 233 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~ 233 (346)
++|++.++- .|+.+..+.|.
T Consensus 76 ~~Pt~~~f~--~G~~v~~~~G~ 95 (113)
T cd02957 76 VLPTLLVYK--NGELIDNIVGF 95 (113)
T ss_pred cCCEEEEEE--CCEEEEEEecH
Confidence 999999987 59999888873
No 72
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.36 E-value=0.0017 Score=51.51 Aligned_cols=85 Identities=13% Similarity=0.231 Sum_probs=59.5
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT 223 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t 223 (346)
+.++.++|+++++||..|+.+... | ..+.+-+. ..+.|...+.+ +...+++.|++..+|++.++.+.
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~-~~~~~~~id~~--------~~~~~~~~~~i~~~P~~~~~~~~- 82 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALK-GIVKVGAVDAD--------VHQSLAQQYGVRGFPTIKVFGAG- 82 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhc-CCceEEEEECc--------chHHHHHHCCCCccCEEEEECCC-
Confidence 456789999999999999999422 2 23333445 56666666655 23568899999999999999852
Q ss_pred CceEEEEeCCCChHHHHH
Q 036413 224 GEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 224 ge~l~~~~G~~~~~~~i~ 241 (346)
......+.|..+.+.+++
T Consensus 83 ~~~~~~~~g~~~~~~l~~ 100 (103)
T cd03001 83 KNSPQDYQGGRTAKAIVS 100 (103)
T ss_pred CcceeecCCCCCHHHHHH
Confidence 244556778777665543
No 73
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.32 E-value=0.0024 Score=53.77 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=72.4
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCcc--cc--ccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFT--SH--TLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGY 207 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~--c~--~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~ 207 (346)
..+|++.+ ++..+.++|+.-..||.+ |+ ++-+.+ .+.-.+++++....|..+|++ .. ..+++.
T Consensus 16 ~~nF~~~v---~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~--~~~aa~~l~~~~v~~~kVD~d------~~--~~La~~ 82 (120)
T cd03065 16 EKNYKQVL---KKYDVLCLLYHEPVESDKEAQKQFQMEELV--LELAAQVLEDKGIGFGLVDSK------KD--AKVAKK 82 (120)
T ss_pred hhhHHHHH---HhCCceEEEEECCCcCChhhChhhcchhhH--HHHHHHHhhcCCCEEEEEeCC------CC--HHHHHH
Confidence 45566554 455678888888888866 76 331111 234455554367899999888 33 789999
Q ss_pred cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
|++.++|++.++. .|+.+. +.|..+.+.+++.|.+.+
T Consensus 83 ~~I~~iPTl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 83 LGLDEEDSIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cCCccccEEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999997 688776 889888888887777654
No 74
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.29 E-value=0.0025 Score=56.99 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=68.5
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..|.++...+. .+++++|+++.+||.+|+.|+ +.+.++.. -.+..|+.++++ .. .++..|++.
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~------~~l~~LA~~~~~vkF~kVd~d------~~---~l~~~f~v~ 134 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALN------SSLLCLAAEYPAVKFCKIRAS------AT---GASDEFDTD 134 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHH------HHHHHHHHHCCCeEEEEEecc------ch---hhHHhCCCC
Confidence 45665554322 346999999999999999994 45555554 024778888877 33 688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCC---hHHHHHHHHHHHHc
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVD---PVSLLEDLLSFMES 249 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~---~~~~i~~L~~fl~~ 249 (346)
..|+++|+- .|+.+..+.|... .+-..+.|..+|.+
T Consensus 135 ~vPTlllyk--~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 135 ALPALLVYK--GGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCCEEEEEE--CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999997 5998888876421 12234455555543
No 75
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.28 E-value=0.0025 Score=59.41 Aligned_cols=104 Identities=13% Similarity=0.217 Sum_probs=75.2
Q ss_pred ccccCHHHHHHHhh-hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 130 MFNGSFEKAKDVGS-DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak-~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
+-..+|++.....+ ..++.+||+++.+||..|+.+... | +.+.+-++ ..+.|..++.+ +...+++.|
T Consensus 35 Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~-~~v~~~~VD~~--------~~~~l~~~~ 102 (224)
T PTZ00443 35 LNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALK-GQVNVADLDAT--------RALNLAKRF 102 (224)
T ss_pred CCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcC-CCeEEEEecCc--------ccHHHHHHc
Confidence 34668888776553 356788999999999999999654 3 45555566 66666666555 235789999
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
++..||++.+++ .|+.+....|..+.+++.+.+.+-+
T Consensus 103 ~I~~~PTl~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 103 AIKGYPTLLLFD--KGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CCCcCCEEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 999999999999 5877766678777776655544433
No 76
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.21 E-value=0.0014 Score=57.57 Aligned_cols=122 Identities=11% Similarity=0.163 Sum_probs=73.0
Q ss_pred HHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC
Q 036413 118 NLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD 197 (346)
Q Consensus 118 ~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~ 197 (346)
.+..+..|| .....-+-+++.-......++.|||+-.+||..|+.. .+.+.++-++-+|.+..++.++..-..
T Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~G~~~~l~~~~lvnFWAsWCppCr~e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~ 95 (153)
T TIGR02738 23 EITNLWAPP-QGLTAATDNAPQGRHANQDDYALVFFYQSTCPYCHQF------APVLKRFSQQFGLPVYAFSLDGQGLTG 95 (153)
T ss_pred HHhhccccc-ccccccccccCcchhhhcCCCEEEEEECCCChhHHHH------HHHHHHHHHHcCCcEEEEEeCCCcccc
Confidence 444555554 2222222222223334455777999999999999887 567777666225666666666200000
Q ss_pred -----ChHHHHHHhhc---CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 198 -----DSECRKVCGYY---KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 198 -----~~eg~~~~~~y---~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+..+......| ++..+|+..+||+..|....+..|.++.+++.+.+.+.
T Consensus 96 fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 96 FPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred cccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 00122233445 77899999999985444455788998888777666553
No 77
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.18 E-value=0.0022 Score=52.99 Aligned_cols=75 Identities=12% Similarity=0.290 Sum_probs=58.2
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI 219 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii 219 (346)
+.+++++++|++.++||..|+.|. +.+.++.+ + +..|+.++.+ . -..+++.|++...|+++++
T Consensus 18 ~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~-~~~~i~f~~Vd~~------~--~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 18 IVKSSERVVCHFYHPEFFRCKIMD------KHLEILAK-KHLETKFIKVNAE------K--APFLVEKLNIKVLPTVILF 82 (113)
T ss_pred HHhCCCcEEEEEECCCCccHHHHH------HHHHHHHH-HcCCCEEEEEEcc------c--CHHHHHHCCCccCCEEEEE
Confidence 335668999999999999999883 55555554 2 4677777776 2 3458899999999999999
Q ss_pred eCCCCceEEEEeCC
Q 036413 220 DPITGEKMRKWCGM 233 (346)
Q Consensus 220 dp~tge~l~~~~G~ 233 (346)
. .|+.+..+.|.
T Consensus 83 k--~G~~v~~~~g~ 94 (113)
T cd02989 83 K--NGKTVDRIVGF 94 (113)
T ss_pred E--CCEEEEEEECc
Confidence 8 58988887764
No 78
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.13 E-value=0.0013 Score=54.60 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=59.1
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC----------------ChHHHHHH
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD----------------DSECRKVC 205 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~----------------~~eg~~~~ 205 (346)
+.-++|+++|++-++||..|+.+- +.+.++-++.++.++.++.++ ..+. ......++
T Consensus 21 ~~~~gk~vvv~F~a~~C~~C~~~~------~~l~~l~~~~~~~vv~v~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (127)
T cd03010 21 ADLKGKPYLLNVWASWCAPCREEH------PVLMALARQGRVPIYGINYKD-NPENALAWLARHGNPYAAVGFDPDGRVG 93 (127)
T ss_pred HHcCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHhcCcEEEEEECCC-CHHHHHHHHHhcCCCCceEEECCcchHH
Confidence 333589999999999999998764 344444441225555555321 0000 00123566
Q ss_pred hhcCCCCCceEEEEeCCCCceEEEEeCCCChHH
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~ 238 (346)
..|++..+|+..|||+ .|+.+.++.|.++.+.
T Consensus 94 ~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 94 IDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV 125 (127)
T ss_pred HhcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence 7788889999999996 6999999999887654
No 79
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.12 E-value=0.00089 Score=50.12 Aligned_cols=42 Identities=19% Similarity=0.464 Sum_probs=39.8
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
..+.++|..|+.. ||-+.+-++.+|+.+|||++.|+..|-+.
T Consensus 10 ~~q~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 10 PEQQEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5788999999999 99999999999999999999999999884
No 80
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.10 E-value=0.0014 Score=51.68 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=57.8
Q ss_pred HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-----------------
Q 036413 141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE----------------- 200 (346)
Q Consensus 141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e----------------- 200 (346)
.+...+|++||++..++|..|+.. .+.+.++.+ +.++.++.++.+.. +.+
T Consensus 14 ~~~~~~k~~ll~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~~v~~d~~----~~~~~~~~~~~~~~~~~~~~ 83 (116)
T cd02966 14 LSDLKGKVVLVNFWASWCPPCRAE------MPELEALAKEYKDDGVEVVGVNVDDD----DPAAVKAFLKKYGITFPVLL 83 (116)
T ss_pred hHHcCCCEEEEEeecccChhHHHH------hHHHHHHHHHhCCCCeEEEEEECCCC----CHHHHHHHHHHcCCCcceEE
Confidence 344448999999999999999765 244444443 14678888877720 022
Q ss_pred --HHHHHhhcCCCCCceEEEEeCCCCceEEEEeC
Q 036413 201 --CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 201 --g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G 232 (346)
...+...|++..+|.+.|||| .|+.+..+.|
T Consensus 84 ~~~~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g 116 (116)
T cd02966 84 DPDGELAKAYGVRGLPTTFLIDR-DGRIRARHVG 116 (116)
T ss_pred cCcchHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence 256788899999999999998 5888877655
No 81
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.04 E-value=0.0025 Score=53.26 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=53.3
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---c--CcEEEEEeecCCCCCC----------------CChHHH
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---A--SNFIFWQVYDDDDDDD----------------DDSECR 202 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~--~nFVfw~~~~~~~~~~----------------~~~eg~ 202 (346)
-++|++||++..+||..|+.+. +.+.++.+ + .++.++.++.+...++ .+....
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHh------HHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 3579999999999999998874 44444433 0 2576777776621000 001224
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
.++..|++..+|++.|||+ .|+.+..
T Consensus 90 ~~~~~~~v~~~P~~~lid~-~G~i~~~ 115 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDA-DGEVVTT 115 (131)
T ss_pred HHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence 6778899999999999997 5886644
No 82
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.97 E-value=0.0018 Score=53.57 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=56.2
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
..+|++... +.+|.++|+++++||..|+.|.. +|. .+.+-++ + .+.|..++.+ ......+++.|
T Consensus 8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~-~~~~~v~~~~vd~~------~~~~~~~~~~~ 74 (114)
T cd02992 8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLR-KWRPVVRVAAVDCA------DEENVALCRDF 74 (114)
T ss_pred HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHH-hcCCceEEEEEecc------chhhHHHHHhC
Confidence 445666665 34589999999999999999954 333 2444444 2 3566666655 44557889999
Q ss_pred CCCCCceEEEEeCC
Q 036413 209 KLDSLPVVLVIDPI 222 (346)
Q Consensus 209 ~~~~~P~i~iidp~ 222 (346)
++..||++.++.+.
T Consensus 75 ~i~~~Pt~~lf~~~ 88 (114)
T cd02992 75 GVTGYPTLRYFPPF 88 (114)
T ss_pred CCCCCCEEEEECCC
Confidence 99999999999863
No 83
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.97 E-value=0.011 Score=48.84 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=62.8
Q ss_pred HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413 141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI 219 (346)
Q Consensus 141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii 219 (346)
.+.+.++-++|+++.+||..|+.+- +.+.++.. ....-|..++.+ . ...++..|++.+.|+++|.
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~------~~l~~la~~~~~i~~~~vd~d------~--~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTK------QLLEELSELSDKLKLEIYDFD------E--DKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHH------HHHHHHHHhcCceEEEEEeCC------c--CHHHHHHcCCCcCCEEEEE
Confidence 4456677799999999999999883 23333333 023446666665 2 3578899999999999999
Q ss_pred eCCCCceEE--EEeCCCChHHHHHHHHHHHH
Q 036413 220 DPITGEKMR--KWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 220 dp~tge~l~--~~~G~~~~~~~i~~L~~fl~ 248 (346)
+. |+... ...|..+..+|.+.|...+.
T Consensus 83 ~~--g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 83 QD--GGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eC--CeecceEEEEecCchHHHHHHHHHHHh
Confidence 84 22222 46787777777777766543
No 84
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.95 E-value=0.0041 Score=63.72 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHhhcCCCccc-ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCC
Q 036413 118 NLASLYRPPVDL-MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDD 196 (346)
Q Consensus 118 ~l~~lf~PP~~l-~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~ 196 (346)
..+++|-.+..+ +-..+|++.+.. +..+|.+||+++.+||..|+.|...+ +.+.+-++..++.|..++++
T Consensus 343 ~~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD----- 413 (463)
T TIGR00424 343 AVADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRAD----- 413 (463)
T ss_pred ccccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECC-----
Confidence 356888665444 456678887643 67899999999999999999996542 44444444124677778777
Q ss_pred CChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEe-CCCChHHHHHHH
Q 036413 197 DDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWC-GMVDPVSLLEDL 243 (346)
Q Consensus 197 ~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~-G~~~~~~~i~~L 243 (346)
..+-...++.|++..||++.++... +....... |.-+.+.|+.-+
T Consensus 414 -~~~~~~~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv 459 (463)
T TIGR00424 414 -GDQKEFAKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFV 459 (463)
T ss_pred -CCccHHHHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHH
Confidence 3322334578999999999999853 22333454 466777655433
No 85
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.91 E-value=0.0089 Score=56.77 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=78.2
Q ss_pred CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh------HHHHHHhhcCCCCCceEEEE
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS------ECRKVCGYYKLDSLPVVLVI 219 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~------eg~~~~~~y~~~~~P~i~ii 219 (346)
++|=||++....|.-|+.+ .+.|+.|-+.-+|-...++++. .-.+ -....++.+++..+|.+.+|
T Consensus 150 ~~~gL~fFy~~~C~~C~~~------apil~~fa~~ygi~v~~VS~DG---~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv 220 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKM------APVIQAFAKEYGISVIPISVDG---TLIPGLPNSRSDSGQAQHLGVKYFPALYLV 220 (256)
T ss_pred hceeEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCC---CCCCCCCCccCChHHHHhcCCccCceEEEE
Confidence 4799999999999999998 5778888875678888888882 0000 11335677888999999999
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 220 DPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+|.|++..-+-.|.++.++|++++...+..|
T Consensus 221 ~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 221 NPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred ECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 9999988888899999999999999998877
No 86
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=96.91 E-value=0.00048 Score=49.38 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=36.4
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
+++|.+|+.. ||-+.+-|..+|+.++||++.|+..|......
T Consensus 1 q~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 1 QEMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp HHHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 4689999999 99999999999999999999999999986543
No 87
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.89 E-value=0.003 Score=50.15 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=60.5
Q ss_pred CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeCCC
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDPIT 223 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp~t 223 (346)
+++++|.+.+++|.+|..+-..+ +.|.+-.+ ..+.|..++.+ +...++..|++. ++|+++++...+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~-~~v~f~~vd~~--------~~~~~~~~~~i~~~~~P~~~~~~~~~ 79 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFK-GKLLFVVVDAD--------DFGRHLEYFGLKEEDLPVIAIINLSD 79 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhC-CeEEEEEEchH--------hhHHHHHHcCCChhhCCEEEEEeccc
Confidence 68899999999999998883211 23444444 56777777665 356799999998 999999999755
Q ss_pred CceEEEEeCCCChHHHHHHHH
Q 036413 224 GEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 224 ge~l~~~~G~~~~~~~i~~L~ 244 (346)
|.+.....|..+.+.+.+-|.
T Consensus 80 ~~k~~~~~~~~~~~~l~~fi~ 100 (103)
T cd02982 80 GKKYLMPEEELTAESLEEFVE 100 (103)
T ss_pred ccccCCCccccCHHHHHHHHH
Confidence 766655555556655444443
No 88
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.88 E-value=0.0065 Score=57.41 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=78.0
Q ss_pred CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH------HHHHHhhcCCCCCceEEEE
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE------CRKVCGYYKLDSLPVVLVI 219 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e------g~~~~~~y~~~~~P~i~ii 219 (346)
++|=||++....|.-|+.+ .+.|+.|-+.-+|-...+++|. .-.++ ....+..+++..+|.+.+|
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~------aPil~~fa~~yg~~v~~VS~DG---~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL------AQVINDFRDTYGLSVIPVSVDG---VINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred hcceEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCC---CCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 4699999999999999999 5888888875688888888872 00010 1123357888899999999
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 220 DPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
+|.|++..-+-.|.++.++|.+++......+..
T Consensus 214 ~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~~~ 246 (248)
T PRK13703 214 DPKSGSVRPLSYGFITQDDLAKRFLNVSTDFKP 246 (248)
T ss_pred ECCCCcEEEEeeccCCHHHHHHHHHHHHhccCC
Confidence 999999888889999999999999988877643
No 89
>PTZ00102 disulphide isomerase; Provisional
Probab=96.87 E-value=0.0036 Score=63.47 Aligned_cols=99 Identities=13% Similarity=0.242 Sum_probs=71.7
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
..+|++++ ++++.+||+++++||..|+.|.... . .+.+.++ ..++.|..++.+ . ...++..|+
T Consensus 39 ~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~-~--~~a~~~~~~~~~i~~~~vd~~------~--~~~l~~~~~ 103 (477)
T PTZ00102 39 DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEY-K--KAAKMLKEKKSEIVLASVDAT------E--EMELAQEFG 103 (477)
T ss_pred hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHH-H--HHHHHHHhcCCcEEEEEEECC------C--CHHHHHhcC
Confidence 44566654 5578999999999999999986543 1 2233333 135788887766 2 357899999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+..||++.++.. |..+ ...|..+++.+++-|.+.+.
T Consensus 104 i~~~Pt~~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 104 VRGYPTIKFFNK--GNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred CCcccEEEEEEC--CceE-EecCCCCHHHHHHHHHHhhC
Confidence 999999999984 5555 77898888888877777653
No 90
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.82 E-value=0.0046 Score=61.96 Aligned_cols=98 Identities=13% Similarity=0.266 Sum_probs=70.8
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
.+|++++ +++|.++|+++++||..|+.+.... ..+.+.+++ .++.|..++.+ . ...++..|++
T Consensus 9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~------~--~~~l~~~~~i 73 (462)
T TIGR01130 9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDAT------E--EKDLAQKYGV 73 (462)
T ss_pred HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECC------C--cHHHHHhCCC
Confidence 4455554 4678999999999999999985432 234444431 34788888776 2 2578999999
Q ss_pred CCCceEEEEeCCCCce-EEEEeCCCChHHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGEK-MRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 211 ~~~P~i~iidp~tge~-l~~~~G~~~~~~~i~~L~~fl 247 (346)
..||++.++. .|+. +....|..+.+.+.+-+.+.+
T Consensus 74 ~~~Pt~~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 74 SGYPTLKIFR--NGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred ccccEEEEEe--CCccceeEecCCCCHHHHHHHHHHhc
Confidence 9999999996 4666 677789888777766666554
No 91
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.80 E-value=0.0078 Score=52.75 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=61.5
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
..+|++.+.. ..++.++|+++++||..|+.+. +.+.++.+ ..++.|..++.++ . ..+++.|
T Consensus 35 ~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~------p~l~~la~~~~~~~v~f~~VDvd~-----~---~~la~~~ 98 (152)
T cd02962 35 PKTLEEELER--DKRVTWLVEFFTTWSPECVNFA------PVFAELSLKYNNNNLKFGKIDIGR-----F---PNVAEKF 98 (152)
T ss_pred HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHcccCCeEEEEEECCC-----C---HHHHHHc
Confidence 3446655433 3578999999999999999983 44555543 1358999999882 2 3678888
Q ss_pred CCCC------CceEEEEeCCCCceEEEEeC
Q 036413 209 KLDS------LPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 209 ~~~~------~P~i~iidp~tge~l~~~~G 232 (346)
++.+ +|++.+.. .|+.+.+..|
T Consensus 99 ~V~~~~~v~~~PT~ilf~--~Gk~v~r~~G 126 (152)
T cd02962 99 RVSTSPLSKQLPTIILFQ--GGKEVARRPY 126 (152)
T ss_pred CceecCCcCCCCEEEEEE--CCEEEEEEec
Confidence 8877 99999987 6898888775
No 92
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.78 E-value=0.0053 Score=51.68 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=53.5
Q ss_pred cCcEEEEEecC-------CCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC-CCc
Q 036413 145 ENKWLLVNLQS-------PKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD-SLP 214 (346)
Q Consensus 145 ~~K~LlV~l~~-------~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~-~~P 214 (346)
.+|+++|++.+ +||.+|+.+ .+.|.++.. +.+..|+.++++... .-......+...|++. ..|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~------~P~l~~l~~~~~~~v~fv~Vdvd~~~-~w~d~~~~~~~~~~I~~~iP 92 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKA------EPVVREALKAAPEDCVFIYCDVGDRP-YWRDPNNPFRTDPKLTTGVP 92 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhh------chhHHHHHHHCCCCCEEEEEEcCCcc-cccCcchhhHhccCcccCCC
Confidence 57899999999 999999988 456666665 136889999987200 0001246788899998 999
Q ss_pred eEEEEeCCCCceE
Q 036413 215 VVLVIDPITGEKM 227 (346)
Q Consensus 215 ~i~iidp~tge~l 227 (346)
++.++. +|+++
T Consensus 93 T~~~~~--~~~~l 103 (119)
T cd02952 93 TLLRWK--TPQRL 103 (119)
T ss_pred EEEEEc--CCcee
Confidence 999995 56544
No 93
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.73 E-value=0.018 Score=47.86 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=73.9
Q ss_pred HHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhc--cCcEEEEEeecCC
Q 036413 117 NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDD 192 (346)
Q Consensus 117 ~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~ 192 (346)
.+|..+-+=|- .-..+|++-. +.+..++|.++.+| |.+|..+ .+.+.++.+ ++...|+.++.+
T Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i------~P~leela~e~~~~v~f~kVdid- 70 (111)
T cd02965 4 ARLQTRHGWPR--VDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDV------AVVLPELLKAFPGRFRAAVVGRA- 70 (111)
T ss_pred HHHHHhcCCcc--cccccHHHHH----hCCCCEEEEecCCcccCcchhhh------HhHHHHHHHHCCCcEEEEEEECC-
Confidence 34555444332 3466788555 56677788888885 9999888 466666665 134667788777
Q ss_pred CCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413 193 DDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLL 240 (346)
Q Consensus 193 ~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i 240 (346)
.. ..++..|++.+.|+++++- .|+.+....|..+-+++.
T Consensus 71 -----~~--~~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 71 -----DE--QALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred -----CC--HHHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence 33 3899999999999999998 599999999988877664
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.58 E-value=0.016 Score=65.22 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=72.4
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCCh-------------------HHH
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDS-------------------ECR 202 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~-------------------eg~ 202 (346)
.+|++|||+-.+||.+|+.. .|.+.++-+ +.+|+++.+.....|.+++. ...
T Consensus 419 kGK~vll~FWAsWC~pC~~e------~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHV------LPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhH------hHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 58999999999999999875 355544443 24588888853211111111 122
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
.+...|++..+|++.|||+ .|+.+.++.|....+.+.+.|...+..+..
T Consensus 493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYYGE 541 (1057)
T ss_pred HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhhcc
Confidence 4667788999999999997 599999999988888888888887776643
No 95
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.55 E-value=0.015 Score=53.81 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=71.8
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC---ChHHHHHHhhcCCCCCceEEEEeC
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD---DSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~---~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
.++|=||++...+|.-|+.+ .+.|+.+-++-+|-...+++|.---.. .......+..+++...|.+.+|+|
T Consensus 119 a~~~gL~~F~~~~C~~C~~~------~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQ------APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP 192 (215)
T ss_pred hhCeEEEEEEcCCCchhHHH------HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence 46999999999999999998 577777777568888888777200000 001244677889999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L 243 (346)
.|++..-+-.|.++.++|++++
T Consensus 193 ~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 193 NTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCeEEEEeeecCCHHHHHHhh
Confidence 8888888889999999998875
No 96
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.51 E-value=0.011 Score=61.56 Aligned_cols=93 Identities=11% Similarity=0.016 Sum_probs=61.7
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCC--------------------ChHH
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDD--------------------DSEC 201 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~--------------------~~eg 201 (346)
++|++|||+-.+||..|+..- +.+.++.+ ..++.+..+..+..+.++ ....
T Consensus 55 kGKpVvV~FWATWCppCk~em------P~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~ 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSEL------GETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHH------HHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence 689999999999999998862 33333322 023444433321000000 0113
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
..+++.|++..+|+++|||+ .|+.+....|.++.+++.+.|.
T Consensus 129 ~~lak~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence 46778899999999999997 6999999999988877666555
No 97
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.44 E-value=0.011 Score=49.60 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=54.5
Q ss_pred HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh---ccC--cEEEEEeecCCCCC--------C-------
Q 036413 137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RAS--NFIFWQVYDDDDDD--------D------- 196 (346)
Q Consensus 137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~--nFVfw~~~~~~~~~--------~------- 196 (346)
+-+..+.-++|.+||++.++||..|+.+- +.+.++. +++ ++.+..++.+.... .
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 33444555689999999999999998763 3343332 212 46565565552000 0
Q ss_pred -CC-hHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 197 -DD-SECRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 197 -~~-~eg~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
.+ .....+.+.|++..+|++.|||+ +|+.+..
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~ 115 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT 115 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence 01 12345677899999999999996 5876644
No 98
>PTZ00102 disulphide isomerase; Provisional
Probab=96.43 E-value=0.0071 Score=61.35 Aligned_cols=104 Identities=11% Similarity=0.159 Sum_probs=70.9
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
+-..+|+++. .+.+|.+||++.++||..|+.|. .+|. .+.+..+ ..++++..++.+ .. ...+..|
T Consensus 362 l~~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~-p~~~--~~a~~~~~~~~v~~~~id~~------~~--~~~~~~~ 427 (477)
T PTZ00102 362 VVGNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLE-PVYN--ELGEKYKDNDSIIVAKMNGT------AN--ETPLEEF 427 (477)
T ss_pred ecccchHHHH---hcCCCCEEEEEECCCCHHHHHHH-HHHH--HHHHHhccCCcEEEEEEECC------CC--ccchhcC
Confidence 3355677654 46689999999999999999883 2333 2222233 136778877766 22 2356788
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
++..+|++.++.+ .++....+.|..+.+.+.+.|.+...
T Consensus 428 ~v~~~Pt~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 428 SWSAFPTILFVKA-GERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred CCcccCeEEEEEC-CCcceeEecCcCCHHHHHHHHHHcCC
Confidence 9999999999985 34444567898888766666665543
No 99
>PLN02309 5'-adenylylsulfate reductase
Probab=96.43 E-value=0.018 Score=58.95 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=71.2
Q ss_pred HhhcCCCccc-ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC
Q 036413 120 ASLYRPPVDL-MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD 198 (346)
Q Consensus 120 ~~lf~PP~~l-~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~ 198 (346)
.++|.-+..+ +-..+|++.+. .+..+|.+||+++.+||..|+.|... |. .+.+-++..++.|..++.+ .
T Consensus 339 ~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d------~ 408 (457)
T PLN02309 339 ADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRAD------G 408 (457)
T ss_pred ccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECC------C
Confidence 5666433322 22334444333 35789999999999999999999543 22 3444443156999988877 2
Q ss_pred hHHHHHHh-hcCCCCCceEEEEeCCCCceEEEEe-CCCChHHHHHHHH
Q 036413 199 SECRKVCG-YYKLDSLPVVLVIDPITGEKMRKWC-GMVDPVSLLEDLL 244 (346)
Q Consensus 199 ~eg~~~~~-~y~~~~~P~i~iidp~tge~l~~~~-G~~~~~~~i~~L~ 244 (346)
.+ ..++. .|++..||+|.+..+.+. .-.... |.-+.+.|++-+.
T Consensus 409 ~~-~~la~~~~~I~~~PTil~f~~g~~-~~v~Y~~~~R~~~~L~~fv~ 454 (457)
T PLN02309 409 DQ-KEFAKQELQLGSFPTILLFPKNSS-RPIKYPSEKRDVDSLLSFVN 454 (457)
T ss_pred cc-hHHHHhhCCCceeeEEEEEeCCCC-CeeecCCCCcCHHHHHHHHH
Confidence 22 35564 699999999999986332 333344 3567766655444
No 100
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.42 E-value=0.0067 Score=40.24 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.0
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILR 46 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~ 46 (346)
.+++|.+.+++ |-+.+.|+..|.+++||++.|++.
T Consensus 2 ~~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 2 DEEKVQQLMEM--GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 36789999999 899999999999999999999973
No 101
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.38 E-value=0.0082 Score=39.71 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=32.4
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN 48 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~ 48 (346)
++.|.+++++ |-+.+.|+..|.+++||++.|++..|
T Consensus 2 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 4678999998 78899999999999999999998765
No 102
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.35 E-value=0.0082 Score=52.29 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=51.1
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHh---cc-------CcEEEEEeecCCCCCC-----------------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RA-------SNFIFWQVYDDDDDDD----------------- 196 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~-------~nFVfw~~~~~~~~~~----------------- 196 (346)
=++|+++||+-++||.+|..+. +.+.++- ++ ++|.+..++.+....+
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~------P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~ 96 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFA------PKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPF 96 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHH------HHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecc
Confidence 3579999999999999998763 3333321 10 1355555554420000
Q ss_pred CChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 197 DDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 197 ~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
....+..+...|++..+|+..|||| .|..+..
T Consensus 97 ~~~~~~~l~~~y~v~~iPt~vlId~-~G~Vv~~ 128 (146)
T cd03008 97 EDEFRRELEAQFSVEELPTVVVLKP-DGDVLAA 128 (146)
T ss_pred cchHHHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence 0222346778899999999999998 5888765
No 103
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.31 E-value=0.028 Score=49.23 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=66.1
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCC---CCCChH------------------HHH
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD---DDDDSE------------------CRK 203 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~---~~~~~e------------------g~~ 203 (346)
.+|++||++..++|..|...-..+ ++...+|=+ .++.|+.++.+... .+...+ ...
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l--~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRL--NRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHH--HHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 679999999999999986432211 122222323 67888888776100 001111 224
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEE------eC---CCChHHHHHHHHHHHHcCCc
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKW------CG---MVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~------~G---~~~~~~~i~~L~~fl~~~~~ 252 (346)
++..|++...|++.|||| +|+.+..+ .| ..+.+++.+.|...+...+.
T Consensus 101 ~~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 101 VAKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HHHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 556777778899999997 68877653 11 24567888888888877654
No 104
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.27 E-value=0.009 Score=39.32 Aligned_cols=36 Identities=36% Similarity=0.455 Sum_probs=32.0
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN 48 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~ 48 (346)
.+.|++++++ |-+.+.|+..|.+++||++.|++-.|
T Consensus 2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999 89999999999999999999987543
No 105
>PTZ00062 glutaredoxin; Provisional
Probab=96.23 E-value=0.038 Score=50.78 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=65.3
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
+.++-.+..+.....++++++++||.+|..|+ +.+.++.. -.++.|+.++.+ |.+..
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------------~~V~~ 62 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------------DANNE 62 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------------cCccc
Confidence 33444444444447789999999999999984 55555554 126788877433 99999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|+++++. .|+.+.++.|. +|.++.+.|......
T Consensus 63 vPtfv~~~--~g~~i~r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 63 YGVFEFYQ--NSQLINSLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred ceEEEEEE--CCEEEeeeeCC-CHHHHHHHHHHHcCC
Confidence 99999997 69999999984 577777777665543
No 106
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.09 E-value=0.044 Score=50.22 Aligned_cols=90 Identities=8% Similarity=0.110 Sum_probs=62.9
Q ss_pred cCcEEEEEec--CCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 145 ENKWLLVNLQ--SPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 145 ~~K~LlV~l~--~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
.++-|+++.. .+||..|+.+. +.+.++.. . +.-+.-++++ ..+...++..|++..+|+++++.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~------p~l~~la~-~~~~~~i~~v~vd------~~~~~~l~~~~~V~~~Pt~~~f~ 85 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETE------QLLEELSE-VSPKLKLEIYDFD------TPEDKEEAEKYGVERVPTTIILE 85 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHH------HHHHHHHh-hCCCceEEEEecC------CcccHHHHHHcCCCccCEEEEEe
Confidence 4455666554 38999999983 45555543 2 2223445566 55678999999999999999998
Q ss_pred CCCCceEE-EEeCCCChHHHHHHHHHHHHc
Q 036413 221 PITGEKMR-KWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 221 p~tge~l~-~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|+.+. ++.|..+.++|.+.|...+..
T Consensus 86 --~g~~~~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 86 --EGKDGGIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred --CCeeeEEEEeecCCHHHHHHHHHHHHHh
Confidence 377764 788988887777777666543
No 107
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.07 E-value=0.043 Score=49.52 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=68.2
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC------ChHHHHHHhhcCC--CCCceEEEEeC
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD------DSECRKVCGYYKL--DSLPVVLVIDP 221 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~------~~eg~~~~~~y~~--~~~P~i~iidp 221 (346)
||++-.+||..|+.. .+.++++-++-.|.++.+++++ +.+. ...+..+...|+. ..+|+..|||+
T Consensus 73 lV~FwaswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~-~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDG-QGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred EEEEECCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCC-CCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC
Confidence 777888999999887 5777787773379999998873 1000 1123446677884 58999999997
Q ss_pred CCCceE-EEEeCCCChHHHHHHHHHHHHc
Q 036413 222 ITGEKM-RKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 222 ~tge~l-~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|... .+..|.++.+++.+.+.+.+..
T Consensus 146 -~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 146 -NTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred -CCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 47764 5789999999888888877654
No 108
>PLN02412 probable glutathione peroxidase
Probab=96.04 E-value=0.025 Score=49.83 Aligned_cols=101 Identities=11% Similarity=0.179 Sum_probs=61.4
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCC---CCCChHHHHH-HhhcC-----------
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD---DDDDSECRKV-CGYYK----------- 209 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~---~~~~~eg~~~-~~~y~----------- 209 (346)
.+|.+||++..+||.+|..-...+ ++.-.+|=. .+|.+++++.+... .+...+-.++ +..|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~-~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~ 104 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKE-QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDV 104 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhh-CCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEee
Confidence 469999999999999997421111 222223333 56777777654100 0001121121 22211
Q ss_pred -----------------------CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 210 -----------------------LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 210 -----------------------~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
+...|+..|||+ .|+.+.+|.|.++++++...+...|..
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 105 NGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 222578899996 699999999999998888888877653
No 109
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.038 Score=52.05 Aligned_cols=97 Identities=16% Similarity=0.308 Sum_probs=77.1
Q ss_pred HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEE
Q 036413 139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVL 217 (346)
Q Consensus 139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ 217 (346)
...++.-+|+++|++...||.+|+.. .|.+.++-+ =-.+||..+|++ +.+..+..|++...|+..
T Consensus 14 ~~ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd--------~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 14 RELSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVD--------ECRGTAATNGVNAMPTFI 79 (288)
T ss_pred HhhhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHH--------HhhchhhhcCcccCceEE
Confidence 35567788999999999999999987 455555555 125799999888 567788999999999988
Q ss_pred EEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 218 VIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 218 iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
+.- +|.++.+++|. ++..|-+++.++++.-..
T Consensus 80 ff~--ng~kid~~qGA-d~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 80 FFR--NGVKIDQIQGA-DASGLEEKVAKYASTSAA 111 (288)
T ss_pred EEe--cCeEeeeecCC-CHHHHHHHHHHHhccCcc
Confidence 775 68999999994 777788888888765443
No 110
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.98 E-value=0.02 Score=44.77 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=42.3
Q ss_pred CcEEEEEecCCCCccccccccccCCCHHHHHHhc----cCcEEEEEeecCCCCCCC------------------ChHHHH
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR----ASNFIFWQVYDDDDDDDD------------------DSECRK 203 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~----~~nFVfw~~~~~~~~~~~------------------~~eg~~ 203 (346)
||.++|++-++||..|.... +.+.++.+ ..++.+..++.++ +.++ ...-..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~------~~l~~l~~~~~~~~~v~~v~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL------PKLKELYKKYKKKDDVEFVFVSLDE-DEEEWKKFLKKNNFPWYNVPFDDDNNSE 73 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH------HHHHHHHHHHTTTTTEEEEEEE-SS-SHHHHHHHHHTCTTSSEEEETTTHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHH------HHHHHHHHHhCCCCCEEEEEEEeCC-CHHHHHHHHHhcCCCceEEeeCcchHHH
Confidence 57778888877777776653 23333322 1455555544442 0000 334567
Q ss_pred HHhhcCCCCCceEEEEeCCCCc
Q 036413 204 VCGYYKLDSLPVVLVIDPITGE 225 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge 225 (346)
+.+.|.+..+|++.|||| .|+
T Consensus 74 l~~~~~i~~iP~~~lld~-~G~ 94 (95)
T PF13905_consen 74 LLKKYGINGIPTLVLLDP-DGK 94 (95)
T ss_dssp HHHHTT-TSSSEEEEEET-TSB
T ss_pred HHHHCCCCcCCEEEEECC-CCC
Confidence 888899999999999997 575
No 111
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.77 E-value=0.079 Score=48.14 Aligned_cols=89 Identities=18% Similarity=0.368 Sum_probs=60.7
Q ss_pred cCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChH
Q 036413 123 YRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSE 200 (346)
Q Consensus 123 f~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~e 200 (346)
|+...++ ...+|.+....|. .++|++|+++.+||..|+.|+ +.+.++-. + +..|..++++ .
T Consensus 81 ~G~v~ei-s~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~-k~~~vkFvkI~ad------~-- 143 (192)
T cd02988 81 FGEVYEI-SKPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLN------QHLSELAR-KFPDTKFVKIIST------Q-- 143 (192)
T ss_pred CCeEEEe-CHHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHH------HHHHHHHH-HCCCCEEEEEEhH------H--
Confidence 4443333 3445555544332 357999999999999999994 44555544 2 2456666655 2
Q ss_pred HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCC
Q 036413 201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM 233 (346)
Q Consensus 201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~ 233 (346)
.+..|++...|+++|.- .|+.+..+.|.
T Consensus 144 ---~~~~~~i~~lPTlliyk--~G~~v~~ivG~ 171 (192)
T cd02988 144 ---CIPNYPDKNLPTILVYR--NGDIVKQFIGL 171 (192)
T ss_pred ---hHhhCCCCCCCEEEEEE--CCEEEEEEeCc
Confidence 25789999999999997 69988888763
No 112
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.72 E-value=0.078 Score=47.68 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=56.1
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCC------------CCCCCChHHHHHHhhcC
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDD------------DDDDDDSECRKVCGYYK 209 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~------------~~~~~~~eg~~~~~~y~ 209 (346)
..+|.++|++-++||..|+..- +.+.++.++ -++++.. .+. ++-..-.....+...|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~l------p~l~~~~~~~~~~vv~Is--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~ 143 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLF------PIIKSIARAEETDVVMIS--DGTPAEHRRFLKDHELGGERYVVSAEIGMAFQ 143 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHH------HHHHHHHHhcCCcEEEEe--CCCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence 3679999999999999998762 333333331 2344332 110 00000001235667788
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+...|+..|||+ .|+.... |.+...+-++.|.+.++.+
T Consensus 144 v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 144 VGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADREG 181 (189)
T ss_pred CCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHcC
Confidence 889999999997 5876653 5544444566665555443
No 113
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.68 E-value=0.093 Score=47.79 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=62.9
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCC---CCCCChHHHHHHhhcCCCCCc----
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDD---DDDDDSECRKVCGYYKLDSLP---- 214 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~---~~~~~~eg~~~~~~y~~~~~P---- 214 (346)
.+|.+||++-.+||..|..-. +.+.++.+ +.++.+++++.+.. +.+...+..+++..+++ .||
T Consensus 38 kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpvl~d 110 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNFFEP 110 (199)
T ss_pred CCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC-Cceeeee
Confidence 589999999999999996421 23333322 25688888865310 00112346666655543 122
Q ss_pred ------------------------------------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 215 ------------------------------------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 215 ------------------------------------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
+..|||+ .|+.+..+.|..+++++...|...+..
T Consensus 111 ~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 111 IEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred eeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678885 799999888988888887777777644
No 114
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.66 E-value=0.046 Score=45.39 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=51.8
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-H------------------H
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE-C------------------R 202 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e-g------------------~ 202 (346)
++|+++|++.+++|..|.... +.+.++.+ +.++.++.++..+.+.+++.+ . .
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred CCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 579999999999999997652 33333332 256777777553111111111 1 2
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEEEeC
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G 232 (346)
.+...|++..+|+..|||+ .|+.+..+.|
T Consensus 96 ~~~~~~~v~~~P~~~vid~-~G~v~~~~~G 124 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDP-TGNVRHVHFG 124 (126)
T ss_pred HHHHHhCCCcCCeEEEECC-CCcEEEEEec
Confidence 3445577778999999997 5988888776
No 115
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.61 E-value=0.061 Score=44.97 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=27.4
Q ss_pred HHHhhcCCCCC---------ceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 203 KVCGYYKLDSL---------PVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 203 ~~~~~y~~~~~---------P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
.++..|++... |++.|||+ +|+....+.|......+-+
T Consensus 91 ~~~~~~gv~~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 91 KLAKAYGVWGEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred HHHHHhCCccccccccCCcceeEEEECC-CCEEEEEEecCCccchHHH
Confidence 45566666665 99999996 6999999999765444433
No 116
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.44 E-value=0.039 Score=51.86 Aligned_cols=34 Identities=12% Similarity=0.306 Sum_probs=29.2
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.|+..|||+ .|+.+.++.|.++++++...|.+.|
T Consensus 201 ~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 201 NFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHh
Confidence 588999996 6999999999999988888887766
No 117
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=95.42 E-value=0.022 Score=58.73 Aligned_cols=80 Identities=15% Similarity=0.295 Sum_probs=67.2
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH-HH----hhcCC
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK-VC----GYYKL 210 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~-~~----~~y~~ 210 (346)
.+|.+.|+.++|.|++.+--..|..||+|...-|-|++..++++ +|||-..+|-++ .|+--+ |+ ..+.-
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~iln-enfv~ikVDREE-----RPDVDK~YM~Fv~assg~ 175 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILN-ENFVKIKVDREE-----RPDVDKLYMAFVVASSGG 175 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHh-hhhhhhccChhh-----cCchHHHHHHHHHhccCC
Confidence 78999999999999999977889999999999999999999999 999998876664 555444 33 33444
Q ss_pred CCCceEEEEeC
Q 036413 211 DSLPVVLVIDP 221 (346)
Q Consensus 211 ~~~P~i~iidp 221 (346)
...|.-+.+.|
T Consensus 176 GGWPmsV~LTP 186 (786)
T KOG2244|consen 176 GGWPMSVFLTP 186 (786)
T ss_pred CCCceeEEeCC
Confidence 67999999987
No 118
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.00 E-value=0.13 Score=41.40 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=43.0
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH-----------------hh
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC-----------------GY 207 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~-----------------~~ 207 (346)
++|+++|++.++||..|+.....+ ..+.+... ..+.++.+..+ + ..+..+++ ..
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~-~~~~vi~v~~~--~---~~~~~~~~~~~~~~~~p~~~~~~~~~~ 90 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEA-DWLDVVLASDG--E---KAEHQRFLKKHGLEAFPYVLSAELGMA 90 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhc-CCcEEEEEeCC--C---HHHHHHHHHHhCCCCCcEEecHHHHhh
Confidence 589999999999999998875332 11222233 45655555322 0 22333344 44
Q ss_pred cCCCCCceEEEEeCCCCceE
Q 036413 208 YKLDSLPVVLVIDPITGEKM 227 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l 227 (346)
|++...|+..|||+ .|+.+
T Consensus 91 ~~~~~~P~~~vid~-~G~v~ 109 (114)
T cd02967 91 YQVSKLPYAVLLDE-AGVIA 109 (114)
T ss_pred cCCCCcCeEEEECC-CCeEE
Confidence 45556677777775 46544
No 119
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.99 E-value=0.085 Score=52.84 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=66.4
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCCCCCChHHHHHHh
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDDDDDDSECRKVCG 206 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~~~~~~eg~~~~~ 206 (346)
+...+|++.. ...+|-+||+++.+||..|..|...+ ..+.+.++ . ++.|..++.+ ..+ +..
T Consensus 351 l~~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~i~~~~id~~------~n~---~~~ 414 (462)
T TIGR01130 351 LVGKNFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYK-DAESDVVIAKMDAT------AND---VPP 414 (462)
T ss_pred eeCcCHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhh-cCCCcEEEEEEECC------CCc---cCC
Confidence 3455677664 34689999999999999999985432 44556666 5 7889999887 333 333
Q ss_pred hcCCCCCceEEEEeCCCCce--EEEEeCCCChHHHHHHH
Q 036413 207 YYKLDSLPVVLVIDPITGEK--MRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 207 ~y~~~~~P~i~iidp~tge~--l~~~~G~~~~~~~i~~L 243 (346)
|++..+|++.+... |.+ .....|..+.+.+++.|
T Consensus 415 -~~i~~~Pt~~~~~~--~~~~~~~~~~g~~~~~~l~~~l 450 (462)
T TIGR01130 415 -FEVEGFPTIKFVPA--GKKSEPVPYDGDRTLEDFSKFI 450 (462)
T ss_pred -CCccccCEEEEEeC--CCCcCceEecCcCCHHHHHHHH
Confidence 88999999999974 433 24567877765544443
No 120
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=94.92 E-value=0.025 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=21.0
Q ss_pred eEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 215 VVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 215 ~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
+..|||+ .|+.+.++.|.++++++..
T Consensus 125 ttflId~-~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 125 TKFLVDR-DGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence 6889996 6999999999888776543
No 121
>PRK15000 peroxidase; Provisional
Probab=94.39 E-value=0.2 Score=45.67 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=61.0
Q ss_pred cCcEEEEEecCC-CCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||++|+++.. +|+.|..-...+ ++...+|-+ .++.+++++.+ +.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~-~g~~vigvS~D------~~~~~~~w~~~~~~~~g~~~i~fpll 103 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQK-RGVEVVGVSFD------SEFVHNAWRNTPVDKGGIGPVKYAMV 103 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHhhHHHhCCccccCceEE
Confidence 589999999985 789997643221 234444545 78888888887 332
Q ss_pred ---HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413 201 ---CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS 245 (346)
Q Consensus 201 ---g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~ 245 (346)
...+++.|++. .+|...|||| .|.....+.|. -+.+++++.|..
T Consensus 104 sD~~~~ia~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 104 ADVKREIQKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred ECCCcHHHHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 12445566664 5899999998 58877776553 256667666644
No 122
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=94.30 E-value=0.17 Score=45.32 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=58.5
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||++|++. ..+|+.|..-...+ ++...+|-+ .++.++.++.+ +++
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~-~gv~vi~VS~D------~~~~~~~~~~~~~~~~~l~fpllsD~ 100 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKK-LGVEVYSVSTD------THFVHKAWHDTSEAIGKITYPMLGDP 100 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHh-cCCcEEEEeCC------CHHHHHHHHhhhhhccCcceeEEECC
Confidence 5899999998 88999997643322 223334444 67888888776 221
Q ss_pred HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 036413 201 CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLL 244 (346)
Q Consensus 201 g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~ 244 (346)
...++..|++. ..|...|||+ .|.....+.+. -..++++..|.
T Consensus 101 ~~~~a~~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 101 TGVLTRNFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred ccHHHHHhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 23455666653 3599999997 58888776432 25566666653
No 123
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=94.29 E-value=0.19 Score=44.28 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=57.8
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC--------------CC------ChHHHH
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD--------------DD------DSECRK 203 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~--------------~~------~~eg~~ 203 (346)
.+||++|++. ..+|..|..-.+.+ +....+|-+ .++.++.++.+...+ .. ......
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 104 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKK 104 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchh
Confidence 5799999998 67899998754332 222333334 677777777661000 00 001223
Q ss_pred HHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHH
Q 036413 204 VCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLS 245 (346)
Q Consensus 204 ~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~ 245 (346)
++..|++. ..|++.|||+ .|..+.++.+.. +.++++..|..
T Consensus 105 ~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 105 ISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 44556653 4689999997 588888875532 34556666544
No 124
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=94.25 E-value=0.18 Score=44.45 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=60.5
Q ss_pred HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc---EEEEEeecCCCCCCC----------------
Q 036413 137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN---FIFWQVYDDDDDDDD---------------- 197 (346)
Q Consensus 137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n---FVfw~~~~~~~~~~~---------------- 197 (346)
++.....=++|-+.+|+...||.+|+.| ||.=..+-+-|+ ++ |-..-++.+.+..+.
T Consensus 24 ~~~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~-~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf 99 (157)
T KOG2501|consen 24 EVLASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELK-DNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPF 99 (157)
T ss_pred cchHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHH-hcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence 3444444567999999999999999999 666667777777 67 755545555211000
Q ss_pred -ChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413 198 -DSECRKVCGYYKLDSLPVVLVIDPITGEKMR 228 (346)
Q Consensus 198 -~~eg~~~~~~y~~~~~P~i~iidp~tge~l~ 228 (346)
++--++++..|.+...|.+.||.| .|..+.
T Consensus 100 ~d~~~~~l~~ky~v~~iP~l~i~~~-dG~~v~ 130 (157)
T KOG2501|consen 100 GDDLIQKLSEKYEVKGIPALVILKP-DGTVVT 130 (157)
T ss_pred CCHHHHHHHHhcccCcCceeEEecC-CCCEeh
Confidence 233455667899999999999998 576664
No 125
>PHA02125 thioredoxin-like protein
Probab=94.24 E-value=0.069 Score=40.57 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=48.1
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
+|+++++||..|+.+.+- | .+ + .|.+..++.+ +...++..|++..+|++. .|+.+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~-l-----~~-~---~~~~~~vd~~--------~~~~l~~~~~v~~~PT~~-----~g~~~~~ 58 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPM-L-----AN-V---EYTYVDVDTD--------EGVELTAKHHIRSLPTLV-----NTSTLDR 58 (75)
T ss_pred EEEEECCCCHhHHHHHHH-H-----HH-H---hheEEeeeCC--------CCHHHHHHcCCceeCeEE-----CCEEEEE
Confidence 688899999999988542 1 11 1 2444444433 356889999999999986 3777778
Q ss_pred EeCC-CChHHHHHHH
Q 036413 230 WCGM-VDPVSLLEDL 243 (346)
Q Consensus 230 ~~G~-~~~~~~i~~L 243 (346)
+.|. .+..++.+.|
T Consensus 59 ~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 59 FTGVPRNVAELKEKL 73 (75)
T ss_pred EeCCCCcHHHHHHHh
Confidence 8885 2335555444
No 126
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.16 E-value=0.35 Score=40.57 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=61.1
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecC--CCCc---cccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHH
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQS--PKEF---TSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVC 205 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~--~~~f---~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~ 205 (346)
..+|++++ ++++.+||-+.. +||. .|..| .-++-. +...++-.++.+++. ..+...++
T Consensus 8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~L---------A~e~~~aa~~v~lakVd~~d~~---~~~~~~L~ 71 (116)
T cd03007 8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRL---------AESSASATDDLLVAEVGIKDYG---EKLNMELG 71 (116)
T ss_pred hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHH---------HHHHHhhcCceEEEEEeccccc---chhhHHHH
Confidence 44666655 667899999999 5554 33333 122222 235788888876100 14557899
Q ss_pred hhcCCC--CCceEEEEeCCCCc--eEEEEeCC-CChHHHHHHH
Q 036413 206 GYYKLD--SLPVVLVIDPITGE--KMRKWCGM-VDPVSLLEDL 243 (346)
Q Consensus 206 ~~y~~~--~~P~i~iidp~tge--~l~~~~G~-~~~~~~i~~L 243 (346)
..|+++ .||+|.+... |+ ......|. .+.+.+++-|
T Consensus 72 ~~y~I~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v 112 (116)
T cd03007 72 ERYKLDKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFL 112 (116)
T ss_pred HHhCCCcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHH
Confidence 999999 9999999984 43 33456785 7777666543
No 127
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.10 E-value=0.21 Score=37.59 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=51.4
Q ss_pred EecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413 152 NLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR 228 (346)
Q Consensus 152 ~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~ 228 (346)
-++++||..|+.+. +.+.++. + .++-+..++.+. . ...+..|++..+|++.+ + |+ .
T Consensus 5 ~f~~~~C~~C~~~~------~~l~~l~~~~~-~~~~~~~vd~~~-----~---~~~~~~~~v~~vPt~~~-~---g~--~ 63 (82)
T TIGR00411 5 LFTSPTCPYCPAAK------RVVEEVAKEMG-DAVEVEYINVME-----N---PQKAMEYGIMAVPAIVI-N---GD--V 63 (82)
T ss_pred EEECCCCcchHHHH------HHHHHHHHHhc-CceEEEEEeCcc-----C---HHHHHHcCCccCCEEEE-C---CE--E
Confidence 34678999998883 3444433 3 456677777662 2 34667799999999975 3 54 2
Q ss_pred EEeCCCChHHHHHHHHHH
Q 036413 229 KWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 229 ~~~G~~~~~~~i~~L~~f 246 (346)
.+.|..+++++.+.|...
T Consensus 64 ~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 64 EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred EEecCCCHHHHHHHHHhh
Confidence 678988888888777654
No 128
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=93.81 E-value=0.41 Score=40.95 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
|+..|||+ .|..+.++.|.... +-++.+..+++
T Consensus 121 ~~~~lid~-~G~i~~~~~g~~~~-~~~~~~~~~~~ 153 (154)
T PRK09437 121 RISFLIDA-DGKIEHVFDKFKTS-NHHDVVLDYLK 153 (154)
T ss_pred eEEEEECC-CCEEEEEEcCCCcc-hhHHHHHHHHh
Confidence 77899997 59999999986443 34555655553
No 129
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=93.49 E-value=0.91 Score=38.97 Aligned_cols=34 Identities=12% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCce----EEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 212 SLPV----VLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 212 ~~P~----i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
.+|. ..|||+ .|+.+.++.|.++++++...|.+.
T Consensus 115 ~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 115 KEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence 4787 899996 799999999999998887777653
No 130
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.42 E-value=0.32 Score=41.04 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=50.8
Q ss_pred hhcCcEEEEEecCC-CCccccccccccCCCHHHHHH---hccCcEEEEEeecCCCCCCCChHH-----------------
Q 036413 143 SDENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQT---IRASNFIFWQVYDDDDDDDDDSEC----------------- 201 (346)
Q Consensus 143 k~~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~---i~~~nFVfw~~~~~~~~~~~~~eg----------------- 201 (346)
.-.+|.++|++-.. ||..|+.--. .+.++ .+..++.+..+..+. ++..
T Consensus 25 ~~~gk~~vv~f~~~~~Cp~C~~~~p------~l~~l~~~~~~~~v~~v~v~~~~-----~~~~~~~~~~~~~~~~~~~D~ 93 (146)
T PF08534_consen 25 DFKGKPVVVNFWASAWCPPCRKELP------YLNELQEKYKDKGVDVVGVSSDD-----DPPVREFLKKYGINFPVLSDP 93 (146)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTCEEEEEEESS-----SHHHHHHHHHTTTTSEEEEET
T ss_pred HhCCCeEEEEEEccCCCCcchhhhh------hHHhhhhhhccCceEEEEecccC-----CHHHHHHHHhhCCCceEEech
Confidence 35678888888777 8888865421 22222 221445555554442 2222
Q ss_pred -HHHHhhcCCC---------CCceEEEEeCCCCceEEEEeCCCC
Q 036413 202 -RKVCGYYKLD---------SLPVVLVIDPITGEKMRKWCGMVD 235 (346)
Q Consensus 202 -~~~~~~y~~~---------~~P~i~iidp~tge~l~~~~G~~~ 235 (346)
..+...|++. .+|++.|||+ .|..+....|..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 94 DGALAKALGVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp TSHHHHHTTCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred HHHHHHHhCCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 3445566666 8999999996 6998888888544
No 131
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=93.38 E-value=0.59 Score=40.09 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=74.1
Q ss_pred hhhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCC-CCccccccccccCCCHHHHHHhc----cCcEEEEEe
Q 036413 114 NNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIR----ASNFIFWQV 188 (346)
Q Consensus 114 ~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~----~~nFVfw~~ 188 (346)
.-.++|.+ ++-|. .-..++++-+..+. ..+|.|.+. .-|. +++-...|.+=|. ...+.|..+
T Consensus 9 ~l~~rl~~-~g~~~--~~~~~~~~~~~~~~----~~vl~~~gdp~r~~------E~~D~avvleELa~e~~~~~v~~akV 75 (132)
T PRK11509 9 ALWQRMLA-RGWTP--VSESRLDDWLTQAP----DGVVLLSSDPKRTP------EVSDNPVMIGELLREFPDYTWQVAIA 75 (132)
T ss_pred HHHHHHHH-cCCCc--cccccHHHHHhCCC----cEEEEeCCCCCcCC------ccccHHHHHHHHHHHhcCCceEEEEE
Confidence 34567777 34433 34566666663322 345556442 2111 2222233333222 023678887
Q ss_pred ecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 189 YDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 189 ~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+.+ . ...++..|++.++|++++.- .|+.+..+.|..+.+++++.|.+++++-
T Consensus 76 DiD------~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 76 DLE------Q--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ECC------C--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 777 2 37899999999999999998 5999999999999999999999998764
No 132
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.29 E-value=0.49 Score=42.75 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=67.8
Q ss_pred CCccc--ccccCHHHHHHHhhhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-
Q 036413 125 PPVDL--MFNGSFEKAKDVGSDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE- 200 (346)
Q Consensus 125 PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e- 200 (346)
|+|.. ++.|++..... +.=.+||++++++ ..+|+.|..--..+ ++...+|-+ .++.+++++.+ ++.
T Consensus 9 p~f~~~~~~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~-~g~~vigIS~D------~~~~ 78 (187)
T PRK10382 9 KPFKNQAFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQK-LGVDVYSVSTD------THFT 78 (187)
T ss_pred CCcEEEEEeCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHh-CCCEEEEEeCC------CHHH
Confidence 55554 23355533221 2225789999998 78999996632221 234444545 67888888877 332
Q ss_pred ----------------------HHHHHhhcCC----CCC--ceEEEEeCCCCceEEEEeC----CCChHHHHHHHHH
Q 036413 201 ----------------------CRKVCGYYKL----DSL--PVVLVIDPITGEKMRKWCG----MVDPVSLLEDLLS 245 (346)
Q Consensus 201 ----------------------g~~~~~~y~~----~~~--P~i~iidp~tge~l~~~~G----~~~~~~~i~~L~~ 245 (346)
...++..|++ ..+ |...|||| .|.....+.. -.+.+++++.|..
T Consensus 79 ~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 79 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred HHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 2456677776 234 99999997 5887766532 1367777776643
No 133
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.11 E-value=0.47 Score=42.94 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=52.8
Q ss_pred cCcEEEEEecC-CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC-------C-------C------ChHHHH
Q 036413 145 ENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD-------D-------D------DSECRK 203 (346)
Q Consensus 145 ~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~-------~-------~------~~eg~~ 203 (346)
.+||++|+++. .+|+.|..--..+ ++...+|-+ .++-++.++.+.... . . ......
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l--~~~~~~f~~-~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQF--SDSVKRFNE-LNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHH--HHHHHHHHH-cCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 57999999985 5688887543221 333444444 688888887772000 0 0 012345
Q ss_pred HHhhcCCC------CCceEEEEeCCCCceEEEEeC
Q 036413 204 VCGYYKLD------SLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 204 ~~~~y~~~------~~P~i~iidp~tge~l~~~~G 232 (346)
+++.|++- .||...|||| .|.....+.+
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~ 145 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVN 145 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECC-CCEEEEEEec
Confidence 67778763 4799999998 5887776655
No 134
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.48 Score=45.87 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=71.2
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.-+|++...++. ..+++|||+-++||.+|..|--.+ +.+..=-+ ..|++--++.+ .. ..++..+++.
T Consensus 30 ~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~-G~f~LakvN~D------~~--p~vAaqfgiq 96 (304)
T COG3118 30 EANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYK-GKFKLAKVNCD------AE--PMVAAQFGVQ 96 (304)
T ss_pred HhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHH---HHHHHHhC-CceEEEEecCC------cc--hhHHHHhCcC
Confidence 445777766653 347999999999999999884222 22333334 79999999888 22 5688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+.|+|..+- .|+-+.-+.|... + +.|.+|+++.
T Consensus 97 sIPtV~af~--dGqpVdgF~G~qP-e---sqlr~~ld~~ 129 (304)
T COG3118 97 SIPTVYAFK--DGQPVDGFQGAQP-E---SQLRQFLDKV 129 (304)
T ss_pred cCCeEEEee--CCcCccccCCCCc-H---HHHHHHHHHh
Confidence 999988876 4888877888544 3 4455555543
No 135
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=92.21 E-value=0.65 Score=35.38 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=45.4
Q ss_pred EEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413 151 VNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR 228 (346)
Q Consensus 151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~ 228 (346)
|.++++||..|+.+ .+.+.+++.+ ..+.|..++ +.+ -+..|++...|+++| .|+.+
T Consensus 3 i~~~a~~C~~C~~~------~~~~~~~~~e~~~~~~~~~v~--------~~~---~a~~~~v~~vPti~i----~G~~~- 60 (76)
T TIGR00412 3 IQIYGTGCANCQMT------EKNVKKAVEELGIDAEFEKVT--------DMN---EILEAGVTATPGVAV----DGELV- 60 (76)
T ss_pred EEEECCCCcCHHHH------HHHHHHHHHHcCCCeEEEEeC--------CHH---HHHHcCCCcCCEEEE----CCEEE-
Confidence 67788999999988 3566666651 235554443 222 156699999999999 47766
Q ss_pred EEeCC-CChHHHHHH
Q 036413 229 KWCGM-VDPVSLLED 242 (346)
Q Consensus 229 ~~~G~-~~~~~~i~~ 242 (346)
+.|. .+.+++.+.
T Consensus 61 -~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 61 -IMGKIPSKEEIKEI 74 (76)
T ss_pred -EEeccCCHHHHHHH
Confidence 7785 344544443
No 136
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=92.01 E-value=0.46 Score=32.24 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=33.9
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
++.|.+.+++--.-+.+.-+..|++++||+|.||+..++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 467888888878889999999999999999999998875
No 137
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.015 Score=56.90 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=69.8
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-hHHHHHHhhcCCC--CCceEEE
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-SECRKVCGYYKLD--SLPVVLV 218 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-~eg~~~~~~y~~~--~~P~i~i 218 (346)
++-..+|+.|.++.+-.+.|++|++..|..+.++.++. +++.+|+.+... ..-.+ -++++....|... ..++..+
T Consensus 7 ~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lff-e~~~~~~~~s~~-~~a~sp~~~~re~l~~~~~~~d~~~~s~ 84 (356)
T KOG1364|consen 7 RALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFF-EHGGFTQVYSSS-SAAPSPIEPQREVLFDPLGIMDQSTSSI 84 (356)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHH-HhcccccccCCc-ccCCCcccccceeeeccccccccCcccc
Confidence 44567899999999999999999999999999999999 999999998841 11113 4566677666665 8999999
Q ss_pred EeCCCCceEEEE
Q 036413 219 IDPITGEKMRKW 230 (346)
Q Consensus 219 idp~tge~l~~~ 230 (346)
++|++|....-|
T Consensus 85 ~~p~~~~~~~s~ 96 (356)
T KOG1364|consen 85 LDPSENQDDESE 96 (356)
T ss_pred cCcccccchhhh
Confidence 999988765444
No 138
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=91.44 E-value=1.7 Score=38.11 Aligned_cols=92 Identities=15% Similarity=0.026 Sum_probs=52.1
Q ss_pred cCcEEEEEecCCC-CccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCC--------CCC-------ChHHHHHHhh
Q 036413 145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDD--------DDD-------DSECRKVCGY 207 (346)
Q Consensus 145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~--------~~~-------~~eg~~~~~~ 207 (346)
.+|+++|++...| |+.|..-- +.+.++.++ .++.+++++.+.-. ..- +..+..++..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~------~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~ 116 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSV------RKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKA 116 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHH------HHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHH
Confidence 5889999999887 88886521 122222221 24555555544100 000 1234466667
Q ss_pred cCCCCCc---------eEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 036413 208 YKLDSLP---------VVLVIDPITGEKMRKWCGM-----VDPVSLLEDL 243 (346)
Q Consensus 208 y~~~~~P---------~i~iidp~tge~l~~~~G~-----~~~~~~i~~L 243 (346)
|++...| ...|||+ +|.....+.+. .+.+++++.|
T Consensus 117 ~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 117 YGVAIAEGPLKGLLARAVFVLDE-NNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred hCCeecccccCCceeeEEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 7765555 8899995 68888777431 2445555544
No 139
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=91.34 E-value=0.6 Score=31.75 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
.+.|.+.+++=-..+.+..+..|++++||+|.||+..++.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3456667777677899999999999999999999988763
No 140
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.24 E-value=1.3 Score=40.59 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=55.9
Q ss_pred hhcCcEEEEE-ecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 143 SDENKWLLVN-LQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 143 k~~~K~LlV~-l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
+...+.+.|. +.++||..|..+. +.+.++..+ .+..+..++.+ +...++..|++.++|++.|..
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~--------~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEAN--------ENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCC--------CCHHHHHHhCCccCCEEEEec
Confidence 3445665555 6889999999874 344444431 24556555555 235688899999999999864
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHH
Q 036413 221 PITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 221 p~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.|+. +.|..+.++|.+.|..
T Consensus 195 --~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 --GVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred --CCEE---EECCCCHHHHHHHHHh
Confidence 3543 7787777777766653
No 141
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.76 E-value=0.63 Score=37.71 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=45.4
Q ss_pred cCcEEEEEecCC-CCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHH------------------
Q 036413 145 ENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKV------------------ 204 (346)
Q Consensus 145 ~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~------------------ 204 (346)
.+||++|++... +|..|......+ ++...++ ++.++-++.+..+ +.+ ..++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l--~~~~~~~-~~~~~~vi~is~d------~~~~~~~~~~~~~~~~~~~~D~~~~~ 94 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPEL--NELYKKY-KDKGVQVIGISTD------DPEEIKQFLEEYGLPFPVLSDPDGEL 94 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHH--HHHHHHH-HTTTEEEEEEESS------SHHHHHHHHHHHTCSSEEEEETTSHH
T ss_pred CCCcEEEEEeCccCccccccchhHH--HHHhhhh-ccceEEeeecccc------cccchhhhhhhhccccccccCcchHH
Confidence 679999999887 999997664321 1122222 2257888888777 443 3333
Q ss_pred HhhcCCC------CCceEEEEeCCCCceE
Q 036413 205 CGYYKLD------SLPVVLVIDPITGEKM 227 (346)
Q Consensus 205 ~~~y~~~------~~P~i~iidp~tge~l 227 (346)
+..|++. .+|.+.|||+ .|...
T Consensus 95 ~~~~~~~~~~~~~~~p~~~lid~-~g~I~ 122 (124)
T PF00578_consen 95 AKAFGIEDEKDTLALPAVFLIDP-DGKIR 122 (124)
T ss_dssp HHHTTCEETTTSEESEEEEEEET-TSBEE
T ss_pred HHHcCCccccCCceEeEEEEECC-CCEEE
Confidence 3445554 6788888886 46544
No 142
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=0.037 Score=51.27 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=38.2
Q ss_pred hhHHHHHHhhhcccCCC-CH-HHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 8 KQRKRVISSFLEITNGQ-TE-ETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~-~~-~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
.++..+|.+|..++..+ .+ .-|+.||++.||||..|++.||+.+.
T Consensus 21 ~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 21 TDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 57889999999985433 34 78999999999999999999999765
No 143
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=90.06 E-value=1.1 Score=42.78 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=59.4
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC--C----C--------CC------ChHHHH
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD--D----D--------DD------DSECRK 203 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~--~----~--------~~------~~eg~~ 203 (346)
.+||++++++ ..+|+.|..=-..+ ++...+|-+ .++.+++++.+.- + + .. +.....
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~-~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ 173 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEE-RGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISRE 173 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChH
Confidence 5789999998 68999997632221 233344444 6777788777610 0 0 00 001245
Q ss_pred HHhhcCCC-----CCceEEEEeCCCCceEEEEeC----CCChHHHHHHHHH
Q 036413 204 VCGYYKLD-----SLPVVLVIDPITGEKMRKWCG----MVDPVSLLEDLLS 245 (346)
Q Consensus 204 ~~~~y~~~-----~~P~i~iidp~tge~l~~~~G----~~~~~~~i~~L~~ 245 (346)
++..|++. ..|.+.|||| .|.....+.. --+.++++..|..
T Consensus 174 iakayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 174 VSKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 66777763 5899999998 5887766521 1366777766653
No 144
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.56 E-value=0.56 Score=45.62 Aligned_cols=89 Identities=19% Similarity=0.303 Sum_probs=62.3
Q ss_pred CcEEEEEecCCCCccccccccccCC--CHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWA--DEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT 223 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~--~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t 223 (346)
+..++|++...||.=+|+|. -++. ...+++-.- ++=|.|+- ++ ..--..+++.|.+.+||++=|+- +
T Consensus 13 ~elvfv~FyAdWCrFSq~L~-piF~EAa~~~~~e~P-~~kvvwg~-VD------cd~e~~ia~ky~I~KyPTlKvfr--n 81 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLK-PIFEEAAAKFKQEFP-EGKVVWGK-VD------CDKEDDIADKYHINKYPTLKVFR--N 81 (375)
T ss_pred ceEEeeeeehhhchHHHHHh-HHHHHHHHHHHHhCC-CcceEEEE-cc------cchhhHHhhhhccccCceeeeee--c
Confidence 67899999999999999984 3331 222333333 35578873 55 33345688999999999999986 6
Q ss_pred CceEEE-EeCCCChHHHHHHHHH
Q 036413 224 GEKMRK-WCGMVDPVSLLEDLLS 245 (346)
Q Consensus 224 ge~l~~-~~G~~~~~~~i~~L~~ 245 (346)
|+++++ ..|.-+++.|++-+..
T Consensus 82 G~~~~rEYRg~RsVeaL~efi~k 104 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEALIEFIEK 104 (375)
T ss_pred cchhhhhhccchhHHHHHHHHHH
Confidence 999984 6677777666655443
No 145
>PRK13189 peroxiredoxin; Provisional
Probab=88.69 E-value=1.9 Score=39.96 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=54.2
Q ss_pred cCcEEEEEe-cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNL-QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l-~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||+++.. =..+|+.|..--..+ +....+|-+ .|+.+++++++ +..
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~-~~v~VigvS~D------~~~~h~aw~~~~~~~~g~~i~fPlls 104 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRE-LNTELIGLSID------QVFSHIKWVEWIKEKLGVEIEFPIIA 104 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHHhHHHhcCcCcceeEEE
Confidence 578887655 467899997532221 233344444 67777777766 221
Q ss_pred --HHHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413 201 --CRKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS 245 (346)
Q Consensus 201 --g~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~ 245 (346)
...+++.|++. ..|.+.|||| .|.....+.+. .+.++++..|..
T Consensus 105 D~~~~ia~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 105 DDRGEIAKKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred cCccHHHHHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 13455666653 4799999998 58766554332 245666665543
No 146
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=2 Score=42.79 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=70.4
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI 219 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii 219 (346)
......++..+|.+..+||..|+.|-. +|. .+...++ . +.....++ -.+-..+|+.|++..||++.+.
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~-~~~--~~~~~l~-~--~~~~~~vd------~~~~~~~~~~y~i~gfPtl~~f 108 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAP-TYK--KLAKALK-G--KVKIGAVD------CDEHKDLCEKYGIQGFPTLKVF 108 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhch-HHH--HHHHHhc-C--ceEEEEeC------chhhHHHHHhcCCccCcEEEEE
Confidence 444566788899999999999999943 333 5666677 5 55556677 7788999999999999999999
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 220 DPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.| |.......|..+.+.+.+.+...++.
T Consensus 109 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 109 RP--GKKPIDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred cC--CCceeeccCcccHHHHHHHHHHhhcc
Confidence 97 34444556766666666655555543
No 147
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=88.55 E-value=0.65 Score=38.90 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=30.0
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHH
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAIL 45 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~ 45 (346)
.+.|.-.++- ||+|.+.|+..|+.|||||-.||-
T Consensus 79 ~eDI~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 79 EDDIELVMKQ-CNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence 4566677787 899999999999999999999986
No 148
>PRK13190 putative peroxiredoxin; Provisional
Probab=88.38 E-value=3.8 Score=37.20 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=55.0
Q ss_pred cCcEEEEE-ecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC------------C-C-------ChHHHH
Q 036413 145 ENKWLLVN-LQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD------------D-D-------DSECRK 203 (346)
Q Consensus 145 ~~K~LlV~-l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~------------~-~-------~~eg~~ 203 (346)
.+||++|+ .-..+|+.|..--..+ .+...+|=+ .++.+++++.+.... . . ++ ...
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~-~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~-~~~ 101 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKK-LGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI-DKE 101 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC-ChH
Confidence 57898875 5567899986432211 122223333 567777776661000 0 0 11 134
Q ss_pred HHhhcCCC------CCceEEEEeCCCCceEEEE----eCCCChHHHHHHHHHH
Q 036413 204 VCGYYKLD------SLPVVLVIDPITGEKMRKW----CGMVDPVSLLEDLLSF 246 (346)
Q Consensus 204 ~~~~y~~~------~~P~i~iidp~tge~l~~~----~G~~~~~~~i~~L~~f 246 (346)
++..|++. .+|.+.|||| .|....+. .+-.+.++++..|...
T Consensus 102 ia~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 102 LAREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 55667763 4899999998 47655443 2224777777777653
No 149
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=87.85 E-value=2.7 Score=34.75 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=46.2
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HH-------------------H
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CR-------------------K 203 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~-------------------~ 203 (346)
.+|+++|++- +.+|..|...-+.+ +....++=. .++.|+.+..+ +++ .. .
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~-~~~~~i~is~d------~~~~~~~~~~~~~~~~~~~l~D~~~~ 91 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAK-GGAEVLGVSVD------SPFSHKAWAEKEGGLNFPLLSDPDGE 91 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHhcccCCCceEEECCChH
Confidence 4677777765 67888886543332 122222223 56777777665 222 23 3
Q ss_pred HHhhcCCCCC---------ceEEEEeCCCCceEEEEeCC
Q 036413 204 VCGYYKLDSL---------PVVLVIDPITGEKMRKWCGM 233 (346)
Q Consensus 204 ~~~~y~~~~~---------P~i~iidp~tge~l~~~~G~ 233 (346)
+...|++... |++.|||+ +|+.+.++.|.
T Consensus 92 ~~~~~g~~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~ 129 (140)
T cd02971 92 FAKAYGVLIEKSAGGGLAARATFIIDP-DGKIRYVEVEP 129 (140)
T ss_pred HHHHcCCccccccccCceeEEEEEECC-CCcEEEEEecC
Confidence 3344444333 47888996 68888888774
No 150
>PTZ00256 glutathione peroxidase; Provisional
Probab=87.80 E-value=5.5 Score=35.42 Aligned_cols=37 Identities=19% Similarity=0.477 Sum_probs=29.0
Q ss_pred CCCCce---EEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 210 LDSLPV---VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 210 ~~~~P~---i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
+..+|+ ..|||+ .|..+.++.|.++++.+.+.|.+.+
T Consensus 142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHh
Confidence 345684 589996 6999999999888888877777665
No 151
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=87.63 E-value=0.78 Score=38.40 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=31.6
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILR 46 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~ 46 (346)
.++.|.-.++- ||+|.+.|+..|+.|||||-.||-.
T Consensus 76 ~~edI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 76 PEEDIELVAEQ-TGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred CHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 45667778888 9999999999999999999999974
No 152
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=87.11 E-value=2.4 Score=35.23 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=27.1
Q ss_pred cCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhccC---cEEEEEeecC
Q 036413 145 ENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRAS---NFIFWQVYDD 191 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~ 191 (346)
.+||++|++..++|.. |...-+.+ ..+.+-+++. ++.++.++.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l---~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANL---AQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHH---HHHHHHhhHhhcCceEEEEEEEC
Confidence 5799999999999986 87543332 2222223312 3767666654
No 153
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=86.67 E-value=3.3 Score=35.82 Aligned_cols=59 Identities=20% Similarity=0.405 Sum_probs=37.7
Q ss_pred HHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 174 VSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 174 V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
+..-.+ .+++|.-++.+ ...+++..|+++ .+|.++|+++.+++.-....|.++++.+..
T Consensus 120 ~a~~~~-~~~~f~~~d~~--------~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~ 180 (184)
T PF13848_consen 120 IAKKFK-GKINFVYVDAD--------DFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEK 180 (184)
T ss_dssp HHHCTT-TTSEEEEEETT--------TTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHH
T ss_pred HHHhcC-CeEEEEEeehH--------HhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHH
Confidence 333335 66666655544 235588889886 899999999887764333477777754433
No 154
>PRK13191 putative peroxiredoxin; Provisional
Probab=86.66 E-value=3.4 Score=38.10 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=57.2
Q ss_pred cCcEEEE-EecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413 145 ENKWLLV-NLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC---------------------- 201 (346)
Q Consensus 145 ~~K~LlV-~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg---------------------- 201 (346)
.+||++| +.-..+|+.|..--..+ ++...+|-+ .|+.+++++++ +...
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~-~g~~VigvS~D------s~~~h~aw~~~~~~~~~~~i~fPlls 102 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKK-LNTELIGLSVD------SNISHIEWVMWIEKNLKVEVPFPIIA 102 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHhhHHHhcCCCCceEEEE
Confidence 5789887 45567899987643222 334445555 77888888877 3332
Q ss_pred ---HHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413 202 ---RKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS 245 (346)
Q Consensus 202 ---~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~ 245 (346)
..+++.|++- ..|.+.|||| .|.....+.+. -+.++++..|..
T Consensus 103 D~~~~ia~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 103 DPMGNVAKRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred CCchHHHHHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2455566651 3699999998 57766654332 256777766654
No 155
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=86.47 E-value=5 Score=31.64 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=48.3
Q ss_pred hhcCcEEEE-EecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 143 SDENKWLLV-NLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 143 k~~~K~LlV-~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
++-++.+=+ -+.+++|..|..+.+ .+.++... .++-+..++.+ . -...+..|++.+.|++.| |
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~------~~~~l~~~~~~i~~~~vd~~------~--~~e~a~~~~V~~vPt~vi-d 72 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQ------ALNLMAVLNPNIEHEMIDGA------L--FQDEVEERGIMSVPAIFL-N 72 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHH------HHHHHHHHCCCceEEEEEhH------h--CHHHHHHcCCccCCEEEE-C
Confidence 334444333 235688999987632 22333330 35666666655 2 256788999999999964 3
Q ss_pred CCCCceEEEEeCCCChHHHHH
Q 036413 221 PITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 221 p~tge~l~~~~G~~~~~~~i~ 241 (346)
|+.+. .|..+.++++.
T Consensus 73 ---G~~~~--~G~~~~~e~~~ 88 (89)
T cd03026 73 ---GELFG--FGRMTLEEILA 88 (89)
T ss_pred ---CEEEE--eCCCCHHHHhh
Confidence 76543 58777777653
No 156
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=86.24 E-value=6.9 Score=35.39 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=57.6
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEE------EEeecCCCC--------------CCC-------
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIF------WQVYDDDDD--------------DDD------- 197 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVf------w~~~~~~~~--------------~~~------- 197 (346)
.+|-.|||.=..||.+|.+= .|.+.++=. .+|-+ .+++.++.. +..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e------~P~l~~l~~-~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXN------ASLIDAIKA-AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred CCCEEEEEEEecCCChhhcc------chHHHHHHH-cCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 37777888888888887542 344444433 56666 666655100 000
Q ss_pred -ChHHHHHHhhcCCCCCceE-EEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 198 -DSECRKVCGYYKLDSLPVV-LVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 198 -~~eg~~~~~~y~~~~~P~i-~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
+.+| .+...|++..+|.. .|||+ .|+.+.+..|.++.+++-. +...+
T Consensus 131 lD~~g-~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~-~~~li 179 (184)
T TIGR01626 131 LDDKG-AVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT-VISLV 179 (184)
T ss_pred ECCcc-hHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH-HHHHH
Confidence 1122 24457778889777 89996 7999999999888776633 44433
No 157
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.26 E-value=1.1 Score=46.70 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=40.1
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
..+++|..|++. ||-..+-+..+||.+|||.|.|+++|-+....
T Consensus 534 ~~~e~l~~~~~~-tGln~~~s~~c~e~~nWdy~~A~k~F~~~ks~ 577 (585)
T KOG3763|consen 534 VTDEKLLKFQEE-TGLNSEWSTMCLEQNNWDYERALKLFIELKSD 577 (585)
T ss_pred hHHHHHHHHHHH-hcCChHHHHHHHHHccCCHHHHHHHHHHhhcC
Confidence 457899999999 99999999999999999999999999987643
No 158
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=85.21 E-value=2.3 Score=44.03 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=67.7
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHH--HHHHhccC--cEEEEEeecCCCCCCCChHHHHHH
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEA--VSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVC 205 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~--V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~ 205 (346)
+-..+|++.+ ..+.++||-+..+||--|+.| .-+- -.+.|.+. .--+-.+|.+ +-..+|
T Consensus 30 Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~L-----aPey~kAA~~Lke~~s~i~LakVDat--------~~~~~~ 92 (493)
T KOG0190|consen 30 LTKDNFKETI----NGHEFVLVEFYAPWCGHCKAL-----APEYEKAATELKEEGSPVKLAKVDAT--------EESDLA 92 (493)
T ss_pred EecccHHHHh----ccCceEEEEEEchhhhhhhhh-----CcHHHHHHHHhhccCCCceeEEeecc--------hhhhhH
Confidence 4466787766 468999999999999999999 3332 23344412 4445555444 338999
Q ss_pred hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
+.|.+..||++-|.- +|.+.....|.-+.+.++.-|.
T Consensus 93 ~~y~v~gyPTlkiFr--nG~~~~~Y~G~r~adgIv~wl~ 129 (493)
T KOG0190|consen 93 SKYEVRGYPTLKIFR--NGRSAQDYNGPREADGIVKWLK 129 (493)
T ss_pred hhhcCCCCCeEEEEe--cCCcceeccCcccHHHHHHHHH
Confidence 999999999999986 6887566678666665554443
No 159
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=85.03 E-value=1.5 Score=29.29 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=41.9
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI 222 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~ 222 (346)
|+.+++.+|..|+.+.. ++..- .+.+ .++.+..++.+. ..+-......+++..+|.+.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLN-KGVKFEAVDVDE-----DPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhC-CCcEEEEEEcCC-----ChHHhhHHHhCCCccccEEEEEeCC
Confidence 35666778888888743 22221 4566 889999998882 2222222356888899999999963
No 160
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=83.86 E-value=0.69 Score=36.11 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=24.0
Q ss_pred EEEEEcCCC-ccc-------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEEE
Q 036413 293 RIGVRLPDG-QEA-------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVT 344 (346)
Q Consensus 293 rIqiRlpdG-~ri-------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~~ 344 (346)
=|+||-||| .|| . ....|.|-..-.+ ...+..+.+.|+.++||+++.+++.
T Consensus 6 ilRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~-~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 6 ILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNN-KEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGG-GGCSSS-TT-CCCCT---TT-EEE-
T ss_pred EEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCC-CcccccCCcCCHHHcCCCCccEEEE
Confidence 489999999 466 0 1235555443221 1234345678999999998887764
No 161
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=83.02 E-value=6.3 Score=33.38 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHhccCc-EEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 173 AVSQTIRASN-FIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 173 ~V~~~i~~~n-FVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|.+-.+ .. +.|.-++.+ ... .+...+++. .||.++++++..| +.....|.++.+.+.+-+..|++.
T Consensus 48 ~vAk~~k-gk~i~Fv~vd~~------~~~--~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 48 SVAEKFK-KKPWGWLWTEAG------AQL--DLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHHhc-CCcEEEEEEeCc------ccH--HHHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 3333344 45 555555555 222 288888984 5999999998655 555567888888777777777654
Q ss_pred C
Q 036413 250 G 250 (346)
Q Consensus 250 ~ 250 (346)
.
T Consensus 118 k 118 (130)
T cd02983 118 R 118 (130)
T ss_pred C
Confidence 3
No 162
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=82.96 E-value=5.7 Score=37.97 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=68.5
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
.|-++...+ ...-|++|.|+.+....|..||.-+ ......|.. -.||=..+... . ++..|+...+
T Consensus 135 ~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~-vKFvkI~a~~~----------~-~~~~f~~~~L 199 (265)
T PF02114_consen 135 EFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPE-VKFVKIRASKC----------P-ASENFPDKNL 199 (265)
T ss_dssp HHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TT-SEEEEEEECGC----------C-TTTTS-TTC-
T ss_pred hHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCc-eEEEEEehhcc----------C-cccCCcccCC
Confidence 355555433 3357999999999999999998554 356667777 88876665332 1 5667888899
Q ss_pred ceEEEEeCCCCceEEEEeCC---CChHHHHHHHHHHHHcCCc
Q 036413 214 PVVLVIDPITGEKMRKWCGM---VDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~---~~~~~~i~~L~~fl~~~~~ 252 (346)
|+|+|.- .|.++..+.|. ..-+-+...|..||.++-.
T Consensus 200 PtllvYk--~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 200 PTLLVYK--NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp SEEEEEE--TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred CEEEEEE--CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 9999998 59999888764 2334567789999987754
No 163
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=82.92 E-value=5.8 Score=33.24 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHhhcCCC----C--CceEEEEeCCCCceEEEEeCC
Q 036413 202 RKVCGYYKLD----S--LPVVLVIDPITGEKMRKWCGM 233 (346)
Q Consensus 202 ~~~~~~y~~~----~--~P~i~iidp~tge~l~~~~G~ 233 (346)
..++..|++. . .|+..|||+ .|+....+.|.
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~ 133 (149)
T cd03018 97 GEVAKAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD 133 (149)
T ss_pred hHHHHHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence 3455556654 2 248899996 58888887763
No 164
>PRK13599 putative peroxiredoxin; Provisional
Probab=82.32 E-value=7.5 Score=35.84 Aligned_cols=90 Identities=14% Similarity=0.062 Sum_probs=50.7
Q ss_pred cCcEE-EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWL-LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~L-lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||+ |++.=..+|+.|..--..+ +....+|-+ .++.+++++.+ +.+
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~-~gv~vigIS~D------~~~~~~~w~~~i~~~~~~~i~fPil~ 97 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKE-LNTELIGLSVD------QVFSHIKWVEWIKDNTNIAIPFPVIA 97 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHhHHHhcCCCCceeEEE
Confidence 47786 4566667888886532111 112223333 56667777666 321
Q ss_pred --HHHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 036413 201 --CRKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLL 244 (346)
Q Consensus 201 --g~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~ 244 (346)
...++..|++. ..|.+.|||| .|.....+... ...+++++.|.
T Consensus 98 D~~~~va~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~ 153 (215)
T PRK13599 98 DDLGKVSNQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALK 153 (215)
T ss_pred CCCchHHHHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 12455667652 5799999998 58766654321 24455555444
No 165
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=81.79 E-value=8 Score=35.05 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=51.0
Q ss_pred cEEEE-EecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------------
Q 036413 147 KWLLV-NLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE------------------------- 200 (346)
Q Consensus 147 K~LlV-~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e------------------------- 200 (346)
||++| +.-..+|+.|..--..+ ++...+|=+ .++.+++++.+ +.+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~-~gv~vigvS~D------~~~~~~~~~~~i~~~~~~~~~fpil~D~ 96 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKK-RNVKLIGLSVD------SVESHIKWIEDIEEYTGVEIPFPIIADP 96 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHhhHHHhcCCCCceeEEECc
Confidence 78766 44557898886542221 122233333 67888888777 321
Q ss_pred HHHHHhhcCCC--------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 036413 201 CRKVCGYYKLD--------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLL 244 (346)
Q Consensus 201 g~~~~~~y~~~--------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~ 244 (346)
...++..|++. ..|.+.|||| .|.....+.+.. +.++++..|.
T Consensus 97 ~~~ia~~yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~ 151 (203)
T cd03016 97 DREVAKLLGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD 151 (203)
T ss_pred hHHHHHHcCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 23556667653 2457999998 487666665532 3455555553
No 166
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=81.18 E-value=7.4 Score=32.49 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=48.5
Q ss_pred cCcEEEEEecCCC-CccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCC---------C-CC-----ChHHHHHHhh
Q 036413 145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDD---------D-DD-----DSECRKVCGY 207 (346)
Q Consensus 145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~---------~-~~-----~~eg~~~~~~ 207 (346)
.+|+++|++...+ |..|..- -+.+.++.++ .++.++.++.+... + .. +.....++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e------~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQ------TKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHH------HHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 4789999998877 5777654 2333443330 26788888776100 0 00 0111345555
Q ss_pred cCCC------CCceEEEEeCCCCceEEEEeC
Q 036413 208 YKLD------SLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 208 y~~~------~~P~i~iidp~tge~l~~~~G 232 (346)
|++. ..|...|||+ .|..+..+.|
T Consensus 99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~ 128 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELV 128 (143)
T ss_pred hCCeeccCCccceEEEEEcC-CCeEEEEEEC
Confidence 6653 1588899996 5888887765
No 167
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=78.52 E-value=20 Score=32.25 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=40.8
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCC---CCCCCChHHHHHHh-hcCCCCCc
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDD---DDDDDDSECRKVCG-YYKLDSLP 214 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~---~~~~~~~eg~~~~~-~y~~~~~P 214 (346)
+.=.+|.+||+.-+++|..|..+. .+.++.+ +..|.+++...+. .+.+...+...++. .|++ +||
T Consensus 21 s~~~GKvvLVvf~AS~C~~~~q~~-------~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fp 92 (183)
T PRK10606 21 EKYAGNVLLIVNVASKCGLTPQYE-------QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFP 92 (183)
T ss_pred HHhCCCEEEEEEEeCCCCCcHHHH-------HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-Cce
Confidence 344579999999888998875442 3333332 2578888876531 01111345566665 5654 355
Q ss_pred eEEEEe
Q 036413 215 VVLVID 220 (346)
Q Consensus 215 ~i~iid 220 (346)
.++=+|
T Consensus 93 v~~k~d 98 (183)
T PRK10606 93 MFSKIE 98 (183)
T ss_pred eEEEEc
Confidence 555555
No 168
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=78.15 E-value=7.3 Score=28.11 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=35.6
Q ss_pred EEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413 151 VNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i 218 (346)
+.+.+++|..|+.+. +.+.++.. ..++-|..++++ .. ..++..|++.+.|++.|
T Consensus 4 ~~f~~~~C~~C~~~~------~~l~~l~~~~~~i~~~~id~~------~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 4 EVFVSPTCPYCPDAV------QAANRIAALNPNISAEMIDAA------EF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEECCCCCCcHHHH------HHHHHHHHhCCceEEEEEEcc------cC--HhHHHHcCCcccCEEEE
Confidence 445778999998773 22333222 135777777776 22 34778899999999865
No 169
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=77.44 E-value=3.7 Score=34.68 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=29.9
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILR 46 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~ 46 (346)
.+-|.--|+- +|.|.+.|+..|+.||+||-.||-.
T Consensus 85 eeDIkLV~eQ-a~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 85 EEDIKLVMEQ-AGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3456667778 8999999999999999999999854
No 170
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=76.54 E-value=5.6 Score=33.49 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcCcEEEEEecCC-------CCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChH-----
Q 036413 135 FEKAKDVGSDENKWLLVNLQSP-------KEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSE----- 200 (346)
Q Consensus 135 f~~A~~~Ak~~~K~LlV~l~~~-------~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~e----- 200 (346)
|.++++.....++-|+|++.+. ||++|.. +.+.|.+.++ .++.+|..+.+. +..
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~------aep~v~~~f~~~~~~~~lv~v~VG------~r~~Wkdp 75 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVA------AEPVVEKAFKKAPENARLVYVEVG------DRPEWKDP 75 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHH------HHHHHHHHHHH-STTEEEEEEE---------HHHHC-T
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHH------HHHHHHHHHHhCCCCceEEEEEcC------CHHHhCCC
Confidence 5556666666778888888653 6666633 4566666666 247888877776 322
Q ss_pred HHHHHh--hcCCCCCceEEEEe
Q 036413 201 CRKVCG--YYKLDSLPVVLVID 220 (346)
Q Consensus 201 g~~~~~--~y~~~~~P~i~iid 220 (346)
...|-+ .+++...|++.-..
T Consensus 76 ~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 76 NNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TSHHHH--CC---SSSEEEECT
T ss_pred CCCceEcceeeeeecceEEEEC
Confidence 123333 68899999999987
No 171
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=74.58 E-value=13 Score=27.96 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=39.6
Q ss_pred cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeC-
Q 036413 154 QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCG- 232 (346)
Q Consensus 154 ~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G- 232 (346)
.+++|..|..+ -..+.+.++..+ +-..+.. ..+..++ ..|++.+.|.+ +|| |+. ++.|
T Consensus 6 ~~~~C~~C~~~------~~~~~~~~~~~~-i~~ei~~-------~~~~~~~-~~ygv~~vPal-vIn---g~~--~~~G~ 64 (76)
T PF13192_consen 6 FSPGCPYCPEL------VQLLKEAAEELG-IEVEIID-------IEDFEEI-EKYGVMSVPAL-VIN---GKV--VFVGR 64 (76)
T ss_dssp ECSSCTTHHHH------HHHHHHHHHHTT-EEEEEEE-------TTTHHHH-HHTT-SSSSEE-EET---TEE--EEESS
T ss_pred eCCCCCCcHHH------HHHHHHHHHhcC-CeEEEEE-------ccCHHHH-HHcCCCCCCEE-EEC---CEE--EEEec
Confidence 46679999866 244555555234 3333321 2333444 89999999999 666 653 3778
Q ss_pred CCChHHHHHHH
Q 036413 233 MVDPVSLLEDL 243 (346)
Q Consensus 233 ~~~~~~~i~~L 243 (346)
..+.+++.+.|
T Consensus 65 ~p~~~el~~~l 75 (76)
T PF13192_consen 65 VPSKEELKELL 75 (76)
T ss_dssp --HHHHHHHHH
T ss_pred CCCHHHHHHHh
Confidence 55666665544
No 172
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=74.07 E-value=20 Score=25.43 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=41.8
Q ss_pred EecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEe
Q 036413 152 NLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWC 231 (346)
Q Consensus 152 ~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~ 231 (346)
-++.++|..|+.+ +.++++.+.-+..++++. .......+...++..+.|++.+ + |+. +.
T Consensus 4 lf~~~~C~~C~~~----------~~~l~~~~i~~~~vdi~~----~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~ 62 (74)
T TIGR02196 4 VYTTPWCPPCKKA----------KEYLTSKGIAFEEIDVEK----DSAAREEVLKVLGQRGVPVIVI-G---HKI---IV 62 (74)
T ss_pred EEcCCCChhHHHH----------HHHHHHCCCeEEEEeccC----CHHHHHHHHHHhCCCcccEEEE-C---CEE---Ee
Confidence 3456789999875 344442345555566652 1233556788899999999876 3 543 66
Q ss_pred CCCChHHHHH
Q 036413 232 GMVDPVSLLE 241 (346)
Q Consensus 232 G~~~~~~~i~ 241 (346)
| .+++.+.+
T Consensus 63 g-~~~~~i~~ 71 (74)
T TIGR02196 63 G-FDPEKLDQ 71 (74)
T ss_pred e-CCHHHHHH
Confidence 7 46654443
No 173
>CHL00098 tsf elongation factor Ts
Probab=68.99 E-value=6.5 Score=36.09 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 12 RVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 12 ~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
++|.+..+. ||...-.|+.-|+.++||++.|+..--..+
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g 41 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKG 41 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 568888899 999999999999999999999998776643
No 174
>PRK09377 tsf elongation factor Ts; Provisional
Probab=67.09 E-value=7.1 Score=37.89 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=36.3
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
..++|.+..+. ||...-.|+.-|+.+|||+|.|+..--..+
T Consensus 5 s~~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G 45 (290)
T PRK09377 5 TAALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKG 45 (290)
T ss_pred CHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 34678899999 999999999999999999999999877644
No 175
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=66.88 E-value=7.2 Score=37.84 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=35.8
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
.++|.+..+. ||...-.|+.-|+.+|||+|.|+..-=..+
T Consensus 5 a~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG 44 (290)
T TIGR00116 5 AQLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESG 44 (290)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4678899999 999999999999999999999999776644
No 176
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=66.58 E-value=7.8 Score=35.48 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=35.7
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
.++|.+..+. ||...-.|+.-|+.++||++.|+..--..+
T Consensus 5 a~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g 44 (198)
T PRK12332 5 AKLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKG 44 (198)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 4678899999 999999999999999999999999777644
No 177
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=66.29 E-value=17 Score=29.71 Aligned_cols=45 Identities=13% Similarity=-0.001 Sum_probs=29.9
Q ss_pred HHhhcCCC--CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 204 VCGYYKLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 204 ~~~~y~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.+..++++ .+|.++|++-..+.+.....+.++++.+..-+.+|++
T Consensus 63 ~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 63 PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 77777875 4999999997433333323466777766666666654
No 178
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=65.84 E-value=19 Score=25.52 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=35.1
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
--+++|.|-..+-.|.+.+.-++=|++.|-|++.||+..++.
T Consensus 8 vPedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T PF11547_consen 8 VPEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp S-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence 356789998888899999999999999999999999988763
No 179
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=64.79 E-value=11 Score=31.96 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=40.9
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc-EEEEEeecCCCCCCCChHHHHHHhhc---CCCCCce
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN-FIFWQVYDDDDDDDDDSECRKVCGYY---KLDSLPV 215 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n-FVfw~~~~~~~~~~~~~eg~~~~~~y---~~~~~P~ 215 (346)
..+...+++-++-|..+||.+|... =|.+..+.. .+ -|=..+-. -.+...+...| +..+.|.
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~------vP~l~kiae-~~p~i~~~~i~-------rd~~~el~~~~lt~g~~~IP~ 100 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARN------VPVLAKIAE-ANPNIEVRIIL-------RDENKELMDQYLTNGGRSIPT 100 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHH------HHHHHHHHH-H-TTEEEEEE--------HHHHHHHTTTTTT-SS--SSE
T ss_pred HHHhcCCCcEEEEEECCCchhHHHH------HHHHHHHHH-hCCCCeEEEEE-------ecCChhHHHHHHhCCCeecCE
Confidence 3444556666777888999999876 377777776 43 22222211 22333444433 3468999
Q ss_pred EEEEeCCCCceEEEEeCC
Q 036413 216 VLVIDPITGEKMRKWCGM 233 (346)
Q Consensus 216 i~iidp~tge~l~~~~G~ 233 (346)
+.++|. .|+.+.+|-..
T Consensus 101 ~I~~d~-~~~~lg~wger 117 (129)
T PF14595_consen 101 FIFLDK-DGKELGRWGER 117 (129)
T ss_dssp EEEE-T-T--EEEEEESS
T ss_pred EEEEcC-CCCEeEEEcCC
Confidence 999995 49999999653
No 180
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=62.84 E-value=8.1 Score=29.62 Aligned_cols=31 Identities=32% Similarity=0.656 Sum_probs=18.3
Q ss_pred ceEEecCCCCCCCCccCCcccchhhcCCCceeEEEE
Q 036413 309 QFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVT 344 (346)
Q Consensus 309 ~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~~ 344 (346)
.|.|.+. .| ..| +.+.||.++|+.++.+|+.
T Consensus 48 ~~~L~~~-~g--~~L--~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 48 QWVLARA-GG--RPL--DPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp -EEEG-G-GT--EEE--ETTSBCGGGT--TT-EEEE
T ss_pred eEEEEec-CC--ccc--CCcCcHhHcCCCCCCEEEe
Confidence 4777742 22 344 6678999999999888763
No 181
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=62.17 E-value=15 Score=27.52 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=28.4
Q ss_pred EEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCC-ceeEEEE
Q 036413 293 RIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLN-NSVILVT 344 (346)
Q Consensus 293 rIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~-n~~vl~~ 344 (346)
+|.||..+|+.+ . .....+|.- -| +.|.+ +.||+++|++ +++|.+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~--~G--~~L~d--~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF--KG--KALAD--DKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE--CC--EECCC--CCCHHHCCCCCCCEEEEE
Confidence 577888888764 0 123455542 23 55633 5899999998 4555443
No 182
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.15 E-value=4.2 Score=38.75 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=34.6
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHH-HHHHh
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKA-ILRFN 48 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~A-v~~f~ 48 (346)
+.+++.+||.. |..+...++.+|.+++|++..| ...||
T Consensus 8 ~~d~~~~~~~~-~~~~~~~s~~~~~~~dw~~~~~~~~s~~ 46 (260)
T KOG3077|consen 8 QKDKFEQFMSF-TASRKKTSLSCLAACDWNLKYAFNDSYY 46 (260)
T ss_pred HHHHHHhhccc-ccccchhhhhhhcccccccchhcccchh
Confidence 88999999999 9999999999999999999999 44454
No 183
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=61.86 E-value=5.2 Score=38.52 Aligned_cols=39 Identities=10% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 13 VISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 13 ~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
.+-.|.++|+.+++..|..+|.-.+|+++.|+..||...
T Consensus 27 ~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 27 LLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 345666777999999999999999999999999999843
No 184
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=58.27 E-value=17 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413 22 NGQTEETALKILNATNWNLDKAILRFN 48 (346)
Q Consensus 22 t~~~~~~A~~~L~~~~wdle~Av~~f~ 48 (346)
...+.....+||.+.+||++.|+..+-
T Consensus 27 ~~~~d~~llRFLRARkf~v~~A~~mL~ 53 (55)
T PF03765_consen 27 EDHDDNFLLRFLRARKFDVEKAFKMLK 53 (55)
T ss_dssp SS-SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 355778999999999999999998763
No 185
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=57.77 E-value=29 Score=26.51 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=28.8
Q ss_pred eEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEE
Q 036413 292 CRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 292 trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl 342 (346)
.+|-||..+|+.+ . .....+|...+.| +.|.+ +.||.++|+++.+.+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G--~~L~D--~~tL~~~gi~~gs~l 71 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSR--EVLQD--GVPLVSQGLGPGSTV 71 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCC--CCCCC--CCCHHHcCCCCCCEE
Confidence 4678888888776 0 1234566433443 45543 469999999855433
No 186
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=57.00 E-value=45 Score=24.16 Aligned_cols=70 Identities=11% Similarity=-0.005 Sum_probs=36.5
Q ss_pred ecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhh--cCCCCCceEEEEeCCCCceEEEE
Q 036413 153 LQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGY--YKLDSLPVVLVIDPITGEKMRKW 230 (346)
Q Consensus 153 l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~--y~~~~~P~i~iidp~tge~l~~~ 230 (346)
+..++|..|+.+ +.++++...-+..++++. ..+....... +...+.|+| +++ .|+.+.
T Consensus 5 y~~~~C~~C~~~----------~~~L~~~~~~~~~idi~~-----~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~-- 64 (77)
T TIGR02200 5 YGTTWCGYCAQL----------MRTLDKLGAAYEWVDIEE-----DEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT-- 64 (77)
T ss_pred EECCCChhHHHH----------HHHHHHcCCceEEEeCcC-----CHhHHHHHHHHhCCCceeCEE-EEC--CCeEec--
Confidence 355789999775 345551222233455552 3333333222 367789987 454 455433
Q ss_pred eCCCChHHHHHHHH
Q 036413 231 CGMVDPVSLLEDLL 244 (346)
Q Consensus 231 ~G~~~~~~~i~~L~ 244 (346)
..+..++.+.|+
T Consensus 65 --~~~~~~~~~~l~ 76 (77)
T TIGR02200 65 --NPSAAQVKAKLQ 76 (77)
T ss_pred --CCCHHHHHHHhh
Confidence 234556666554
No 187
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=56.92 E-value=37 Score=31.60 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=55.9
Q ss_pred HHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc----EEEEEeecCC----------C-CCC------
Q 036413 138 AKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN----FIFWQVYDDD----------D-DDD------ 196 (346)
Q Consensus 138 A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n----FVfw~~~~~~----------~-~~~------ 196 (346)
+......++|-.++.+.|++|.-|+.|. +.+.++.+ .+ |+.|...-.. . .+|
T Consensus 99 ~i~~g~~~~k~~I~vFtDp~CpyCkkl~------~~l~~~~~-~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~ 171 (232)
T PRK10877 99 MIVYKAPQEKHVITVFTDITCGYCHKLH------EQMKDYNA-LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFD 171 (232)
T ss_pred cEEecCCCCCEEEEEEECCCChHHHHHH------HHHHHHhc-CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHH
Confidence 3444455778889999999999999985 34556554 32 2223221000 0 000
Q ss_pred ---------------CChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 197 ---------------DDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 197 ---------------~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
.-.+-.++++.+++...|++.+-| |+.+ .|..++++|...|.
T Consensus 172 ~~~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~~---G~~~---~G~~~~~~L~~~l~ 228 (232)
T PRK10877 172 DAMKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLSN---GTLV---PGYQGPKEMKAFLD 228 (232)
T ss_pred HHHcCCCCCcccccchHHHhHHHHHHcCCccccEEEEcC---CeEe---eCCCCHHHHHHHHH
Confidence 012334455677788899988544 6544 79888887766654
No 188
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=56.90 E-value=27 Score=28.82 Aligned_cols=67 Identities=12% Similarity=-0.034 Sum_probs=40.8
Q ss_pred CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH-HHHhhcCCCCCceEEEEeCCCC
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR-KVCGYYKLDSLPVVLVIDPITG 224 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~-~~~~~y~~~~~P~i~iidp~tg 224 (346)
++.||+++-..+|..|+.--.++ ++...++-. .++.++.++.+ +.+.. .+++.+. +|+-.+.|| .+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~-~~v~vv~V~~~------~~~~~~~~~~~~~---~~~p~~~D~-~~ 90 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDA-LGVELVAVGPE------SPEKLEAFDKGKF---LPFPVYADP-DR 90 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHh-cCeEEEEEeCC------CHHHHHHHHHhcC---CCCeEEECC-ch
Confidence 45556666688999997654332 122233334 68999999888 55433 3555544 455677787 34
Q ss_pred c
Q 036413 225 E 225 (346)
Q Consensus 225 e 225 (346)
+
T Consensus 91 ~ 91 (149)
T cd02970 91 K 91 (149)
T ss_pred h
Confidence 4
No 189
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=56.07 E-value=23 Score=26.15 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=13.8
Q ss_pred CCccCCcccchhhcCCCceeEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl 342 (346)
+.|. .+.||++.|+.+++++
T Consensus 48 ~~L~--d~~tl~~~~i~~g~~i 67 (76)
T cd01806 48 KQMN--DDKTAADYKLEGGSVL 67 (76)
T ss_pred eEcc--CCCCHHHcCCCCCCEE
Confidence 4453 3579999999965444
No 190
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=55.52 E-value=25 Score=36.64 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=66.9
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
+..-+|+ ..+..++|=+||-++.+||.-|..|-- + =+.+.+.++ .+|-|+--+|++ ..|- ...
T Consensus 371 vVgknfd---~iv~de~KdVLvEfyAPWCgHCk~laP-~--~eeLAe~~~~~~~vviAKmDaT------aNd~----~~~ 434 (493)
T KOG0190|consen 371 VVGKNFD---DIVLDEGKDVLVEFYAPWCGHCKALAP-I--YEELAEKYKDDENVVIAKMDAT------ANDV----PSL 434 (493)
T ss_pred EeecCHH---HHhhccccceEEEEcCcccchhhhhhh-H--HHHHHHHhcCCCCcEEEEeccc------cccC----ccc
Confidence 3344555 456788899999999999999999821 1 345555555 347788888877 2221 123
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
.++.||+|+..-.-..+......|.- -++.|..|++.+..
T Consensus 435 ~~~~fPTI~~~pag~k~~pv~y~g~R----~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 435 KVDGFPTILFFPAGHKSNPVIYNGDR----TLEDLKKFIKKSAT 474 (493)
T ss_pred cccccceEEEecCCCCCCCcccCCCc----chHHHHhhhccCCC
Confidence 45679999988742223445556643 36677788877654
No 191
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=54.56 E-value=41 Score=25.03 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=43.2
Q ss_pred CcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCCCCCChHHHHHHhhcC--CCCCceEEEEe
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDDDDDDSECRKVCGYYK--LDSLPVVLVID 220 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~~~~~~eg~~~~~~y~--~~~~P~i~iid 220 (346)
++.++|++.+++|..|+.+ .+.+.++-+ . ...+..++.. + ........|. +..+|.+.+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~-~~~~~~~~~~i~~~------~-~~~~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAE-EYGGDVEVVAVNVD------D-ENPDLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHH-HhcCCcEEEEEECC------C-CChHHHHHHhhhhccCCeEEEEe
Confidence 8889998779999999988 566666665 3 3566666664 1 3455666666 77789887555
No 192
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=53.17 E-value=15 Score=35.95 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=34.0
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILR 46 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~ 46 (346)
.+.++|.+..+= ||.+..-|++-|+.|||||..|..-
T Consensus 45 ~~~allk~LR~k-Tgas~~ncKkALee~~gDl~~A~~~ 81 (340)
T KOG1071|consen 45 SSKALLKKLREK-TGASMVNCKKALEECGGDLVLAEEW 81 (340)
T ss_pred ccHHHHHHHHHH-cCCcHHHHHHHHHHhCCcHHHHHHH
Confidence 578899999999 9999999999999999999998753
No 193
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=51.89 E-value=1.4e+02 Score=26.43 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=58.2
Q ss_pred HHHhhhcCcEEEEEecC-CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------
Q 036413 139 KDVGSDENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------- 200 (346)
Q Consensus 139 ~~~Ak~~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------- 200 (346)
...+.-.+||+++|++- .+.+.|..=-++. ++...+|=+ -|.+.++++.+ +++
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~F--rd~~~ef~~-~~a~V~GIS~D------s~~~~~~F~~k~~L~f~LLS 93 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDF--RDLLEEFEK-LGAVVLGISPD------SPKSHKKFAEKHGLTFPLLS 93 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHHH--HHHHHHHHh-CCCEEEEEeCC------CHHHHHHHHHHhCCCceeeE
Confidence 45556677899999965 2344442211111 223333444 68899999888 443
Q ss_pred --HHHHHhhcCC------------CCCceEEEEeCCCCceEEEEeCC---CChHHHHHHHHH
Q 036413 201 --CRKVCGYYKL------------DSLPVVLVIDPITGEKMRKWCGM---VDPVSLLEDLLS 245 (346)
Q Consensus 201 --g~~~~~~y~~------------~~~P~i~iidp~tge~l~~~~G~---~~~~~~i~~L~~ 245 (346)
...++..|.+ ..-+...|||+ .|.....|... -.++++++.|.+
T Consensus 94 D~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 94 DEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred CCcHHHHHHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHH
Confidence 3445666665 13578899997 69998899542 234566666654
No 194
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=49.87 E-value=22 Score=34.54 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=35.7
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
-++|....+. ||...-.|++-|+.+++|+|.||..-=..+
T Consensus 6 a~~VKeLRe~-TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG 45 (296)
T COG0264 6 AALVKELREK-TGAGMMDCKKALEEANGDIEKAIEWLREKG 45 (296)
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4678888999 999999999999999999999999777654
No 195
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=48.32 E-value=61 Score=31.87 Aligned_cols=98 Identities=12% Similarity=0.276 Sum_probs=60.1
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
+-.++++-...-|.++-| +|.++.+||--|.+|. -+|. +|.--+++-+.=.=.+-.+ -..=..+++.+.+
T Consensus 29 ~VeDLddkFkdnkdddiW-~VdFYAPWC~HCKkLe-PiWd--eVG~elkdig~PikVGKlD------aT~f~aiAnefgi 98 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIW-FVDFYAPWCAHCKKLE-PIWD--EVGHELKDIGLPIKVGKLD------ATRFPAIANEFGI 98 (468)
T ss_pred hhhhhhHHhhhcccCCeE-EEEeechhhhhccccc-chhH--HhCcchhhcCCceeecccc------cccchhhHhhhcc
Confidence 345666666777777777 6899999999999994 5663 3433343122222122222 2333457788899
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
..||+|.++- |-......|.-+.+.+++
T Consensus 99 qGYPTIk~~k---gd~a~dYRG~R~Kd~iie 126 (468)
T KOG4277|consen 99 QGYPTIKFFK---GDHAIDYRGGREKDAIIE 126 (468)
T ss_pred CCCceEEEec---CCeeeecCCCccHHHHHH
Confidence 9999999876 333444455555554444
No 196
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=47.73 E-value=67 Score=24.98 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=32.3
Q ss_pred CCCeeEEEEEcCCCccc----------------------cCCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413 288 RNLVCRIGVRLPDGQEA----------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 288 ~~~~trIqiRlpdG~ri----------------------~~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~ 343 (346)
......|.|+.++|+.+ .....++|.- -| +.| +.+.|++++|+.+..++-
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f--~G--~~L--~~~~T~~~l~m~d~d~I~ 79 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF--DG--QRI--RDNQTPDDLGMEDGDEIE 79 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE--CC--eEC--CCCCCHHHcCCCCCCEEE
Confidence 45678899999999886 0123333432 23 345 346799999999665553
No 197
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=46.62 E-value=21 Score=24.16 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Q 036413 23 GQTEETALKILNATNWNLDKAILRF 47 (346)
Q Consensus 23 ~~~~~~A~~~L~~~~wdle~Av~~f 47 (346)
......=..+|+.|++|+=.||..+
T Consensus 14 ~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 14 HQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCChHHHHHHHHHcCCcHHHHHHHh
Confidence 3445556679999999999999876
No 198
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.22 E-value=48 Score=30.57 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeC--CCChHHHHHHHHHHHH
Q 036413 200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCG--MVDPVSLLEDLLSFME 248 (346)
Q Consensus 200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G--~~~~~~~i~~L~~fl~ 248 (346)
+++++++...+..||++++.+ +|++-..-.| +.+++.++..|.+.+.
T Consensus 162 ~~r~l~~rlg~~GfPTl~le~--ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 162 DSRRLMQRLGAAGFPTLALER--NGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHHhccCCCCeeeeee--CCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 358899999999999999999 5776655567 5689999999987653
No 199
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=45.97 E-value=50 Score=28.48 Aligned_cols=67 Identities=10% Similarity=-0.111 Sum_probs=42.3
Q ss_pred cCcEEEEEecC-CCCcccccc-ccccCCCHHHHHHhccCcE-EEEEeecCCCCCCCChHHHH-HHhhcCCCCCceEEEEe
Q 036413 145 ENKWLLVNLQS-PKEFTSHTL-NRDTWADEAVSQTIRASNF-IFWQVYDDDDDDDDDSECRK-VCGYYKLDSLPVVLVID 220 (346)
Q Consensus 145 ~~K~LlV~l~~-~~~f~c~~l-nRdvw~~~~V~~~i~~~nF-Vfw~~~~~~~~~~~~~eg~~-~~~~y~~~~~P~i~iid 220 (346)
.+||++++++- .+++.|..= -++. ++...+|-+ .+. .+++++.+ ++...+ ++..+++. .|+-++-|
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~--~~~~~~f~~-~g~~~V~~iS~D------~~~~~~~~~~~~~~~-~~f~lLsD 97 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGY--VENADELKA-KGVDEVICVSVN------DPFVMKAWGKALGAK-DKIRFLAD 97 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHH--HHhHHHHHH-CCCCEEEEEECC------CHHHHHHHHHhhCCC-CcEEEEEC
Confidence 46787777754 578888542 2222 233455555 787 69999998 777666 88777662 24445556
Q ss_pred C
Q 036413 221 P 221 (346)
Q Consensus 221 p 221 (346)
+
T Consensus 98 ~ 98 (155)
T cd03013 98 G 98 (155)
T ss_pred C
Confidence 5
No 200
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=44.27 E-value=73 Score=23.62 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=35.5
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
.-...|+..-+||++.+++.---.|..||-|-+.|++..+..
T Consensus 4 ~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 4 ASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 345678899999655599999999999999999999988774
No 201
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=42.79 E-value=89 Score=32.78 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=54.6
Q ss_pred HhhhcCcEEEEEe-cCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413 141 VGSDENKWLLVNL-QSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 141 ~Ak~~~K~LlV~l-~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i 218 (346)
.-++-+|.+-|-+ .+++|..|....+ .+.++..+ .+.-.--++.. +-..++..|++.+-|++.|
T Consensus 470 ~i~~~~~~~~i~v~~~~~C~~Cp~~~~------~~~~~~~~~~~i~~~~i~~~--------~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 470 KIKKITKPVNIKIGVSLSCTLCPDVVL------AAQRIASLNPNVEAEMIDVS--------HFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred HHHhcCCCeEEEEEECCCCCCcHHHHH------HHHHHHHhCCCceEEEEECc--------ccHHHHHhCCceecCEEEE
Confidence 3344456665555 6889999976632 33444441 24555555544 3367888999999999987
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHH
Q 036413 219 IDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 219 idp~tge~l~~~~G~~~~~~~i~~L 243 (346)
+|+.+ +.|.++.+++++.|
T Consensus 536 ----~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 ----DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred ----CCEEE--EeeCCCHHHHHHhh
Confidence 35543 67988988888765
No 202
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=40.86 E-value=26 Score=26.05 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=33.1
Q ss_pred EEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH-HHHhhcCCCCCceEEEEe
Q 036413 151 VNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR-KVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~-~~~~~y~~~~~P~i~iid 220 (346)
+-+..++|+.|+.+. .++..-. ++ ..|.++.++.+. ...+.. .+...++..++|.| +|+
T Consensus 2 ~~f~~~~Cp~C~~~~-~~L~~~~----i~-~~~~~~~v~~~~----~~~~~~~~l~~~~g~~~vP~v-~i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKKAK-EILAKLN----VK-PAYEVVELDQLS----NGSEIQDYLEEITGQRTVPNI-FIN 61 (84)
T ss_pred EEEECCCChhHHHHH-HHHHHcC----CC-CCCEEEEeeCCC----ChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 344568999998772 2221111 22 337777766551 012222 36677888899998 445
No 203
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=40.55 E-value=34 Score=36.26 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=72.2
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-----cCcEEEEEeecCCCCCCCChHHHHH
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-----ASNFIFWQVYDDDDDDDDDSECRKV 204 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-----~~nFVfw~~~~~~~~~~~~~eg~~~ 204 (346)
+-..+|..|+..++ |--||-+.++||..|+.|- +..+.+-+ ..=.....+|-. ..+..++
T Consensus 44 Ld~~tf~~~v~~~~---~~~lVEFy~swCGhCr~FA------Ptfk~~A~dl~~W~~vv~vaaVdCA------~~~N~~l 108 (606)
T KOG1731|consen 44 LDVDTFNAAVFGSR---KAKLVEFYNSWCGHCRAFA------PTFKKFAKDLEKWRPVVRVAAVDCA------DEENVKL 108 (606)
T ss_pred eehhhhHHHhcccc---hhHHHHHHHhhhhhhhhcc------hHHHHHHHHHhcccceeEEEEeecc------chhhhhh
Confidence 33667888888777 5558889999999999983 44444332 123345566777 8899999
Q ss_pred HhhcCCCCCceEEEEeCCCCce--EEEEeCCCChHHHHHHHHHHH
Q 036413 205 CGYYKLDSLPVVLVIDPITGEK--MRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 205 ~~~y~~~~~P~i~iidp~tge~--l~~~~G~~~~~~~i~~L~~fl 247 (346)
|..+.+..||.|-..-|.+-.. =..+.|.+.+.+..+.|...+
T Consensus 109 CRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 109 CREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred HhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 9999999999999998742110 122456666777777777665
No 204
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=39.42 E-value=57 Score=23.68 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=13.2
Q ss_pred ccchhhcCCC-ceeEEEEe
Q 036413 328 KMTFQESGLN-NSVILVTL 345 (346)
Q Consensus 328 d~TieeagL~-n~~vl~~~ 345 (346)
+.||+++|++ ++.|.++|
T Consensus 53 ~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 53 DETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred cCcHHHCCCCCCCEEEEEe
Confidence 5799999998 55555544
No 205
>PTZ00044 ubiquitin; Provisional
Probab=37.74 E-value=61 Score=24.03 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=18.9
Q ss_pred cceEEecCCCCCCCCccCCcccchhhcCCC-ceeEEEE
Q 036413 308 RQFRLTRPDPGAPKPLDYNSKMTFQESGLN-NSVILVT 344 (346)
Q Consensus 308 ~~f~l~~~~P~~~~~l~~~~d~TieeagL~-n~~vl~~ 344 (346)
...+|. |.| +.|. .+.||++.|+. +++|.+.
T Consensus 39 ~~q~L~--~~g--~~L~--d~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 39 KQIRLI--YSG--KQMS--DDLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred HHeEEE--ECC--EEcc--CCCcHHHcCCCCCCEEEEE
Confidence 345555 333 4563 45789999998 5555544
No 206
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=37.60 E-value=52 Score=24.54 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=18.8
Q ss_pred cceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 308 RQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 308 ~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
..+.|.. - ++.|.+ +.||.+.|+++ ++|.+.
T Consensus 37 ~~q~L~~--~--G~~L~D--~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 37 DQFWLSF--E--GRPMED--EHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred HHeEEEE--C--CEECCC--CCCHHHcCCCCCCEEEEE
Confidence 3455543 2 256643 47999999984 444443
No 207
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=37.52 E-value=39 Score=32.71 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
+..+.-.+.+ ||++.++|...|+.++|++-.||-.....
T Consensus 236 ~ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 236 DRAVRIVMEA-TGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3345567888 89999999999999999999999887664
No 208
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=36.95 E-value=1.1e+02 Score=23.77 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=41.0
Q ss_pred cCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 168 TWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 168 vw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
.+.+..|.++++ .+++....+.. -.+...+...++....+.+.+|+. .|+. .|.++..+++.
T Consensus 57 ~~~~~~v~~~~~-~~~~~v~~~~~------~~~~~~~~~~~~~~~~~~~~vv~~-~~~~----~Gvvs~~di~~ 118 (119)
T cd04598 57 LYGKKPVSEVMD-PDPLIVEADTP------LEEVSRLATGRDSQNLYDGFIVTE-EGRY----LGIGTVKDLLR 118 (119)
T ss_pred HHcCCcHHHhcC-CCcEEecCCCC------HHHHHHHHHcCCcccccccEEEee-CCeE----EEEEEHHHHhc
Confidence 345567889998 88888776655 567777777776655555557774 3553 46666666553
No 209
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=36.80 E-value=38 Score=23.15 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=16.3
Q ss_pred EEEeCCCCceEEEE----eCCCChHH
Q 036413 217 LVIDPITGEKMRKW----CGMVDPVS 238 (346)
Q Consensus 217 ~iidp~tge~l~~~----~G~~~~~~ 238 (346)
.||||.||+++.+- .|.++++.
T Consensus 12 Giidp~tg~~lsv~~A~~~glId~~~ 37 (45)
T PF00681_consen 12 GIIDPETGERLSVEEAIQRGLIDSDT 37 (45)
T ss_dssp SEEETTTTEEEEHHHHHHTTSS-HHH
T ss_pred eEEeCCCCeEEcHHHHHHCCCcCHHH
Confidence 48999999999763 47788653
No 210
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=68 Score=31.87 Aligned_cols=97 Identities=14% Similarity=0.253 Sum_probs=59.6
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i 218 (346)
...+..+.-.||-+..+||..|+.|- -.|. .+...++ ..+.-++.++.+ -...+++.+.+..||++.+
T Consensus 156 ~~~~~~~~~~lv~f~aPwc~~ck~l~-~~~~--~~a~~~~~~~~v~~~~~d~~--------~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 156 ETVKDSDADWLVEFYAPWCGHCKKLA-PEWE--KLAKLLKSKENVELGKIDAT--------VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred hhhhccCcceEEEEeccccHHhhhcC-hHHH--HHHHHhccCcceEEEeeccc--------hHHHHhhhhcccCCceEEE
Confidence 34455666667777999999999992 2222 2222332 144444444332 3477889999999999966
Q ss_pred EeCCCCce-EEEEeCCCChHHHHHHHHHHHHc
Q 036413 219 IDPITGEK-MRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 219 idp~tge~-l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.-+ |.. .....|.-+.+.+++-+......
T Consensus 225 f~~--~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 225 FPP--GEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ecC--CCcccccccccccHHHHHHHHHhhcCC
Confidence 665 333 33445556666666666655554
No 211
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=36.23 E-value=67 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=14.4
Q ss_pred CCccCCcccchhhcCCCce-eEEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILVT 344 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~~ 344 (346)
+.|. .+.||.++|+.+. +|.+.
T Consensus 48 ~~L~--d~~~L~~~~i~~~~~i~l~ 70 (76)
T cd01803 48 KQLE--DGRTLSDYNIQKESTLHLV 70 (76)
T ss_pred EECC--CCCcHHHcCCCCCCEEEEE
Confidence 4453 3469999999854 55443
No 212
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=35.99 E-value=45 Score=32.16 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=34.9
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
.+..+.-.|++ |+++.++|.++|+.++.++-.||-.....-
T Consensus 233 ~dRa~RIv~~a-T~~~~~~A~~~L~~~~~~vK~AIvm~~~~~ 273 (298)
T COG2103 233 RDRAVRIVMEA-TGCSAEEAEALLEEAGGNVKLAIVMLLTGL 273 (298)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHcCCccHhHHHHHHhCC
Confidence 45566778889 899999999999999999999998887643
No 213
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=35.60 E-value=97 Score=23.41 Aligned_cols=20 Identities=5% Similarity=0.260 Sum_probs=13.4
Q ss_pred CCccCCcccchhhcCCCceeEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl 342 (346)
+.|. .+.||+++||++.+.+
T Consensus 49 k~L~--D~~tL~~ygi~~~stv 68 (73)
T cd01791 49 TIFK--DHISLGDYEIHDGMNL 68 (73)
T ss_pred cCCC--CCCCHHHcCCCCCCEE
Confidence 4453 3469999999855443
No 214
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=34.91 E-value=52 Score=24.16 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=18.5
Q ss_pred cceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEE
Q 036413 308 RQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILV 343 (346)
Q Consensus 308 ~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~ 343 (346)
...+|.- -| +.| +.+.||.++|+++ ++|.+
T Consensus 37 ~~q~Li~--~G--~~L--~d~~~l~~~~i~~~stl~l 67 (70)
T cd01798 37 DQLRVIF--AG--KEL--RNTTTIQECDLGQQSILHA 67 (70)
T ss_pred HHeEEEE--CC--eEC--CCCCcHHHcCCCCCCEEEE
Confidence 3455543 23 556 3358999999994 44444
No 215
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=34.66 E-value=47 Score=32.09 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=32.7
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
...+.-.+.+ ||++.++|..+|+.++|++-.||-.-...
T Consensus 231 ~Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 231 ARAVRIVRQA-TDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3445567888 89999999999999999999999876653
No 216
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=34.06 E-value=83 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=13.1
Q ss_pred CCccCCcccchhhcCCCce-eEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~ 343 (346)
+.|. + + ||+++|+++. +|.+
T Consensus 49 k~L~-d-~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 49 TRLS-S-G-KLQDLGLGDGSKLTL 69 (78)
T ss_pred cCCC-C-C-cHHHcCCCCCCEEEE
Confidence 4553 3 3 8999999854 4444
No 217
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=33.55 E-value=90 Score=22.99 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=19.4
Q ss_pred ceEEecCCCCCCCCccCCcccchhhcCCC-ceeEEEEe
Q 036413 309 QFRLTRPDPGAPKPLDYNSKMTFQESGLN-NSVILVTL 345 (346)
Q Consensus 309 ~f~l~~~~P~~~~~l~~~~d~TieeagL~-n~~vl~~~ 345 (346)
.++|.. .| +.|.+ +.||+++|++ +++|.+++
T Consensus 39 ~~~Li~--~G--k~L~d--~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 39 QLVLIF--AG--KILKD--TDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred HEEEEE--CC--eEcCC--CCcHHHcCCCCCCEEEEEE
Confidence 455543 33 55633 4699999998 55665554
No 218
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=33.49 E-value=1.5e+02 Score=21.70 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=32.2
Q ss_pred EEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCC-hHHH-HHHhhcCCCCCceEEEEe
Q 036413 151 VNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDD-SECR-KVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~-~eg~-~~~~~y~~~~~P~i~iid 220 (346)
+-+..++|+.|..+ +++++ ...|-++.++... . .+-. .+.+.++..++|.| +++
T Consensus 3 ~~y~~~~Cp~C~~~----------~~~l~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~g~~~~P~v-~~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKRA----------KSLLKELGVKPAVVELDQHE-----DGSEIQDYLQELTGQRTVPNV-FIG 60 (82)
T ss_pred EEEEcCCCHHHHHH----------HHHHHHcCCCcEEEEEeCCC-----ChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 33456789999766 33343 1456666666551 2 2222 35567788899998 455
No 219
>PRK10329 glutaredoxin-like protein; Provisional
Probab=31.60 E-value=2.3e+02 Score=21.55 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=40.3
Q ss_pred cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCC
Q 036413 154 QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM 233 (346)
Q Consensus 154 ~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~ 233 (346)
..++|..|+. ++++|.+.+.=|--.+++. .+++.......+..+.|.|.+ + + ..|.|
T Consensus 7 t~~~Cp~C~~----------ak~~L~~~gI~~~~idi~~-----~~~~~~~~~~~g~~~vPvv~i-~---~---~~~~G- 63 (81)
T PRK10329 7 TRNDCVQCHA----------TKRAMESRGFDFEMINVDR-----VPEAAETLRAQGFRQLPVVIA-G---D---LSWSG- 63 (81)
T ss_pred eCCCCHhHHH----------HHHHHHHCCCceEEEECCC-----CHHHHHHHHHcCCCCcCEEEE-C---C---EEEec-
Confidence 3467888754 4666763455454556663 566666555567779999954 3 2 24667
Q ss_pred CChHHHHHHH
Q 036413 234 VDPVSLLEDL 243 (346)
Q Consensus 234 ~~~~~~i~~L 243 (346)
.+++.+.+..
T Consensus 64 f~~~~l~~~~ 73 (81)
T PRK10329 64 FRPDMINRLH 73 (81)
T ss_pred CCHHHHHHHH
Confidence 4666555443
No 220
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=31.58 E-value=86 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=13.9
Q ss_pred CCccCCcccchhhcCCCceeEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl 342 (346)
+.|. .+.||+++|+++++.+
T Consensus 50 ~~L~--d~~~L~~~~i~~~~~i 69 (77)
T cd01805 50 KILK--DDTTLEEYKIDEKDFV 69 (77)
T ss_pred EEcc--CCCCHHHcCCCCCCEE
Confidence 5563 3479999999965433
No 221
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=31.51 E-value=1.1e+02 Score=23.60 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=33.9
Q ss_pred cEEEEEecC----CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH-HHhhcCCCCCceEEEEe
Q 036413 147 KWLLVNLQS----PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK-VCGYYKLDSLPVVLVID 220 (346)
Q Consensus 147 K~LlV~l~~----~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~-~~~~y~~~~~P~i~iid 220 (346)
+.++|+..+ ++|..|.. ++++|++.+.-|..+++.. +++... +....+..++|.| +|+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~----------ak~~L~~~~i~y~~idv~~-----~~~~~~~l~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRK----------VVQILNQLGVDFGTFDILE-----DEEVRQGLKEYSNWPTFPQL-YVN 70 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHH----------HHHHHHHcCCCeEEEEcCC-----CHHHHHHHHHHhCCCCCCEE-EEC
Confidence 456667665 46666644 4666763444444555552 455444 4455567899998 556
No 222
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=29.40 E-value=78 Score=22.83 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=20.4
Q ss_pred cceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413 308 RQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 308 ~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~ 343 (346)
...+|... | +.| +.+.||++.|+++.+++.
T Consensus 34 ~~~~L~~~--G--~~L--~d~~tL~~~~i~~~~~I~ 63 (69)
T PF00240_consen 34 EQQRLIYN--G--KEL--DDDKTLSDYGIKDGSTIH 63 (69)
T ss_dssp GGEEEEET--T--EEE--STTSBTGGGTTSTTEEEE
T ss_pred ccceeeee--e--ecc--cCcCcHHHcCCCCCCEEE
Confidence 45566553 2 556 667899999999665544
No 223
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.23 E-value=62 Score=31.32 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=32.7
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
...+.-.+.+ ||++.++|...|+.++|++-.||-.....
T Consensus 232 ~Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~ai~~~~~~ 270 (296)
T PRK12570 232 ARAVRIVMQA-TGCSEDEAKELLKESDNDVKLAILMILTG 270 (296)
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHhCCccHHHHHHHHhC
Confidence 3455567888 89999999999999999999999877653
No 224
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=29.04 E-value=1.2e+02 Score=22.94 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=47.3
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
|+.+..++|.-|... -+.+..+..+..|-+-.+|.+ +.+ .+...|+. .-|.+.+.++++......
T Consensus 2 l~l~~k~~C~LC~~a------~~~L~~~~~~~~~~l~~vDI~------~d~--~l~~~Y~~-~IPVl~~~~~~~~~~~~~ 66 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEA------KEILEEVAAEFPFELEEVDID------EDP--ELFEKYGY-RIPVLHIDGIRQFKEQEE 66 (81)
T ss_dssp EEEEE-SSSHHHHHH------HHHHHHCCTTSTCEEEEEETT------TTH--HHHHHSCT-STSEEEETT-GGGCTSEE
T ss_pred EEEEcCCCCChHHHH------HHHHHHHHhhcCceEEEEECC------CCH--HHHHHhcC-CCCEEEEcCcccccccce
Confidence 345566777777554 123333322367888888888 332 27778885 789999888643332344
Q ss_pred EeCCCChHHHHHHHH
Q 036413 230 WCGMVDPVSLLEDLL 244 (346)
Q Consensus 230 ~~G~~~~~~~i~~L~ 244 (346)
..+.++.+.+.+.|+
T Consensus 67 ~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 67 LKWRFDEEQLRAWLE 81 (81)
T ss_dssp EESSB-HHHHHHHHH
T ss_pred eCCCCCHHHHHHHhC
Confidence 566788877766653
No 225
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=28.99 E-value=74 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=14.9
Q ss_pred CCccCCcccchhhcCCCceeEEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl~ 343 (346)
+.|. .+.|++++|+++.+++.
T Consensus 46 ~~L~--D~~~l~~~~i~~~~tv~ 66 (70)
T cd01794 46 KLLT--DKTRLQETKIQKDYVVQ 66 (70)
T ss_pred eECC--CCCCHHHcCCCCCCEEE
Confidence 5563 35899999999665554
No 226
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=27.95 E-value=2.3e+02 Score=21.57 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=49.5
Q ss_pred ccCHHHHHHHhhhcC------cEEEEEecCCCCccccccccccC---CCHHHHHHhccCcEEEEEeecCCCCCCCChHHH
Q 036413 132 NGSFEKAKDVGSDEN------KWLLVNLQSPKEFTSHTLNRDTW---ADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR 202 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~------K~LlV~l~~~~~f~c~~lnRdvw---~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~ 202 (346)
.-++.+|++..++.+ .+++| +.+...+.--.-.+++. .+..+.++++ .+++....+.. -.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v-vd~~~~~~G~v~~~~l~~~~~~~~v~~~~~-~~~~~i~~~~~------~~~~~ 76 (109)
T cd04606 5 DWTVGEALEYLRRNADDPETIYYIYV-VDEEGRLLGVVSLRDLLLADPDTPVSDIMD-TDVISVSADDD------QEEVA 76 (109)
T ss_pred cCcHHHHHHHHHhccCcccceeEEEE-ECCCCCEEEEEEHHHHhcCCCcchHHHHhC-CCCeEEcCCCC------HHHHH
Confidence 346777777665444 23332 22223332112223332 2346888888 78766665444 34455
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHH
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLED 242 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~ 242 (346)
...... ..+++.|++. .|+. .|.++..++++.
T Consensus 77 ~~~~~~---~~~~~~Vv~~-~~~~----~Gvit~~dll~~ 108 (109)
T cd04606 77 RLFEKY---DLLALPVVDE-EGRL----VGIITVDDVIDV 108 (109)
T ss_pred HHHHHc---CCceeeeECC-CCcE----EEEEEhHHhhhh
Confidence 544444 4467777874 3553 455566666543
No 227
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=27.23 E-value=75 Score=32.50 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=41.3
Q ss_pred HHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc
Q 036413 119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR 179 (346)
Q Consensus 119 l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~ 179 (346)
=+|.|+|=.+|+---++++|.+.=.++.|+|..|+-+. +...|+++++
T Consensus 333 ~eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~-------------n~~~vkr~l~ 380 (477)
T KOG2456|consen 333 QEEIFGPILPIITVQSLDEAINFINEREKPLALYIFSN-------------NEKLVKRFLT 380 (477)
T ss_pred hhhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecC-------------CHHHHHHHHH
Confidence 46899999999999999999999999999999999774 3455666776
No 228
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=26.82 E-value=45 Score=26.64 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=14.2
Q ss_pred CCccCCcccchhhcCCCceeEEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl~ 343 (346)
-.++.+...|+++|||..+.+++
T Consensus 54 ~e~L~~~~~Tv~da~L~~gQ~vl 76 (88)
T PF14836_consen 54 YELLNNPEITVEDAGLYDGQVVL 76 (88)
T ss_dssp EEEE--TTSBTTTTT--TTEEEE
T ss_pred hhhhCCCCccHHHccCcCCCEEE
Confidence 35667888999999999666554
No 229
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=26.71 E-value=1.3e+02 Score=20.42 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 174 VSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 174 V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
|.+++. .+++...-+.. -.+..+....++ +.++.|+|. .|+. .|.++..++++.|.
T Consensus 1 v~~~m~-~~~~~v~~~~~------l~~~~~~~~~~~---~~~~~V~d~-~~~~----~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT-PPPITVSPDDS------LEEALEIMRKNG---ISRLPVVDE-DGKL----VGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB-SSSEEEETTSB------HHHHHHHHHHHT---SSEEEEEST-TSBE----EEEEEHHHHHHHHH
T ss_pred CeECCc-CCCEEEcCcCc------HHHHHHHHHHcC---CcEEEEEec-CCEE----EEEEEHHHHHhhhh
Confidence 466777 78888776655 566666666554 778888985 3553 46666777776653
No 230
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=26.09 E-value=4.3e+02 Score=22.80 Aligned_cols=95 Identities=14% Similarity=0.179 Sum_probs=63.0
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
-..+.|.|+|-+-..+...|-.|. +++ ..+.+-++ +--+.|-++.+ +-..|...|.+...|.+...=.
T Consensus 19 ~~t~~rlvViRFGr~~Dp~C~~mD-~~L--~~i~~~vs-nfa~Iylvdid--------eV~~~~~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 19 LSTEERLVVIRFGRDWDPTCMKMD-ELL--SSIAEDVS-NFAVIYLVDID--------EVPDFVKMYELYDPPTVMFFFN 86 (142)
T ss_pred hcccceEEEEEecCCCCchHhhHH-HHH--HHHHHHHh-hceEEEEEecc--------hhhhhhhhhcccCCceEEEEEc
Confidence 356789999999888999998883 232 23445555 55578888877 3356888899999998877653
Q ss_pred CCCceE-------EEEeCCC-ChHHHHHHHHHHHH
Q 036413 222 ITGEKM-------RKWCGMV-DPVSLLEDLLSFME 248 (346)
Q Consensus 222 ~tge~l-------~~~~G~~-~~~~~i~~L~~fl~ 248 (346)
+.--++ ..|+|++ +.++||+-+.....
T Consensus 87 ~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 87 NKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred CceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 211122 2355543 67888887776543
No 231
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=25.53 E-value=1.3e+02 Score=21.94 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=13.5
Q ss_pred CCccCCcccchhhcCCCceeEEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl~ 343 (346)
+.| +.+.|+++.||....++-
T Consensus 49 ~~L--~~~~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 49 KRL--DPNDTPEDLGIEDGDTID 69 (72)
T ss_dssp EEE---TTSCHHHHT-STTEEEE
T ss_pred EEc--CCCCCHHHCCCCCCCEEE
Confidence 445 556799999999655543
No 232
>smart00250 PLEC Plectin repeat.
Probab=25.52 E-value=28 Score=22.89 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=17.9
Q ss_pred CceEEEEeCCCCceEEEE----eCCCChH
Q 036413 213 LPVVLVIDPITGEKMRKW----CGMVDPV 237 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~----~G~~~~~ 237 (346)
...-.||||.||+++.+- .|.++++
T Consensus 8 ~~~~Giidp~t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 8 SAIGGIIDPETGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred hheeEEEcCCCCCCcCHHHHHHcCCCCcc
Confidence 467789999999988652 3555543
No 233
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=24.82 E-value=1.5e+02 Score=20.67 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=30.9
Q ss_pred ecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413 153 LQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 153 l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i 218 (346)
...++|..|... +++|++.++=+=-++++. +......+...++..++|.|.|
T Consensus 4 y~~~~C~~C~~~----------~~~L~~~~i~y~~~dv~~----~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 4 YTKPGCPYCKKA----------KEFLDEKGIPYEEVDVDE----DEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EESTTSHHHHHH----------HHHHHHTTBEEEEEEGGG----SHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEcCCCcCHHHH----------HHHHHHcCCeeeEccccc----chhHHHHHHHHcCCCccCEEEE
Confidence 345788888655 566663444444445552 0233444555558899999986
No 234
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=24.66 E-value=52 Score=26.24 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCccc----cCCc-ceEEecCCC
Q 036413 291 VCRIGVRLPDGQEA----NQTR-QFRLTRPDP 317 (346)
Q Consensus 291 ~trIqiRlpdG~ri----~~~~-~f~l~~~~P 317 (346)
.-.=-+|||+|+|+ ..++ +|||.-.-|
T Consensus 26 g~~kEf~lpsGkR~D~id~~~k~IyELKPnNP 57 (89)
T PF15650_consen 26 GREKEFRLPSGKRPDFIDFETKIIYELKPNNP 57 (89)
T ss_pred cceeeeecCCCCcCccccCCcceEEEecCCCH
Confidence 33456999999998 2345 999987656
No 235
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=23.66 E-value=2.1e+02 Score=21.29 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=30.4
Q ss_pred cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 154 QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 154 ~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
..++|..|... +++|.+.++=+-..+++. ..++..+...++..++|.|. |+
T Consensus 14 ~~~~Cp~C~~a----------k~~L~~~gi~y~~idi~~-----~~~~~~~~~~~g~~~vP~i~-i~ 64 (79)
T TIGR02190 14 TKPGCPFCAKA----------KATLKEKGYDFEEIPLGN-----DARGRSLRAVTGATTVPQVF-IG 64 (79)
T ss_pred ECCCCHhHHHH----------HHHHHHcCCCcEEEECCC-----ChHHHHHHHHHCCCCcCeEE-EC
Confidence 44678888554 555552333333345542 44555666667788999995 44
No 236
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=23.46 E-value=2.3e+02 Score=23.04 Aligned_cols=40 Identities=28% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHhhcCCC--C--CceEEEEeCCCCceEEEEeCCC-ChHHHHHHHH
Q 036413 203 KVCGYYKLD--S--LPVVLVIDPITGEKMRKWCGMV-DPVSLLEDLL 244 (346)
Q Consensus 203 ~~~~~y~~~--~--~P~i~iidp~tge~l~~~~G~~-~~~~~i~~L~ 244 (346)
.....+++. . +|.++|++. .+.+.. ..+.+ +++.+.+-+.
T Consensus 64 ~~l~~fgl~~~~~~~P~~~i~~~-~~~KY~-~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 64 HELEEFGLDFSGGEKPVVAIRTA-KGKKYV-MEEEFSDVDALEEFLE 108 (111)
T ss_pred HHHHHcCCCcccCCCCEEEEEeC-CCCccC-CCcccCCHHHHHHHHH
Confidence 377888885 4 999999995 343333 34445 5544444333
No 237
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=23.25 E-value=58 Score=28.01 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=32.9
Q ss_pred ChHHHHHHhhcCC---CCCceEEEEeCCCCceEEEEe-----CCCChHHHHHHHHHHHHcC
Q 036413 198 DSECRKVCGYYKL---DSLPVVLVIDPITGEKMRKWC-----GMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 198 ~~eg~~~~~~y~~---~~~P~i~iidp~tge~l~~~~-----G~~~~~~~i~~L~~fl~~~ 250 (346)
+.|+-.-++.|.. -+=|.++++- .|+.+..++ | .+++.+.+.|...+++|
T Consensus 78 DkEAt~~aR~yf~~~pPSSPS~ALfK--dGelvh~ieRh~IEG-r~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 78 DKEATAKAREYFEPYPPSSPSIALFK--DGELVHFIERHHIEG-RPAEEIAENLQDAFDEY 135 (136)
T ss_dssp SHHHHHHHHHTSTTS---SSEEEEEE--TTEEEEEE-GGGTTT-S-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCCCchheeee--CCEEEEEeehhhcCC-CCHHHHHHHHHHHHHhh
Confidence 3444444444443 2569999998 699888763 4 57889999999887754
No 238
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=22.66 E-value=4.2e+02 Score=27.34 Aligned_cols=89 Identities=11% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHhhhcCcEE-EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceE
Q 036413 138 AKDVGSDENKWL-LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVV 216 (346)
Q Consensus 138 A~~~Ak~~~K~L-lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i 216 (346)
.++..++-+|.+ +.-+.++.|+.|...-+-. .-....+ .|..+..+ + ..+-..++..|++.+-|++
T Consensus 107 ~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~----~~~a~~~-~~i~~~~i--d------~~~~~~~~~~~~v~~VP~~ 173 (517)
T PRK15317 107 VIEQIKALDGDFHFETYVSLSCHNCPDVVQAL----NLMAVLN-PNITHTMI--D------GALFQDEVEARNIMAVPTV 173 (517)
T ss_pred HHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH----HHHHHhC-CCceEEEE--E------chhCHhHHHhcCCcccCEE
Confidence 334444444454 3344667899986542111 1122234 45544444 3 5566778889999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 217 LVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 217 ~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.| + |+.+ +.|..+.++|++.|..
T Consensus 174 ~i-~---~~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 174 FL-N---GEEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred EE-C---CcEE--EecCCCHHHHHHHHhc
Confidence 65 4 4433 6788888888887764
No 239
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=22.57 E-value=2e+02 Score=19.80 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=28.5
Q ss_pred cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHHhhcCCCCCceEEE
Q 036413 154 QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 154 ~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~~~y~~~~~P~i~i 218 (346)
..++|..|+.. +.++++.+.-+...++.. .++ ...+.......++|++.+
T Consensus 6 ~~~~Cp~C~~~----------~~~L~~~~i~~~~~di~~-----~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 6 SKSTCPYCKRA----------KRLLESLGIEFEEIDILE-----DGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred ECCCCHHHHHH----------HHHHHHcCCcEEEEECCC-----CHHHHHHHHHHhCCCCcCEEEE
Confidence 34568877554 555553444444555552 232 344556667788998843
No 240
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=22.42 E-value=2.7e+02 Score=19.24 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=36.5
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVCGYYKLDSLPVVLVIDPITGEKMR 228 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~~~y~~~~~P~i~iidp~tge~l~ 228 (346)
++.++.++|..|+.+ +.++++.++-+-..+++. +.+ ...+........+|.|.+ + | .
T Consensus 2 v~l~~~~~c~~c~~~----------~~~l~~~~i~~~~~~i~~-----~~~~~~~~~~~~~~~~vP~i~~-~---~---~ 59 (73)
T cd02976 2 VTVYTKPDCPYCKAT----------KRFLDERGIPFEEVDVDE-----DPEALEELKKLNGYRSVPVVVI-G---D---E 59 (73)
T ss_pred EEEEeCCCChhHHHH----------HHHHHHCCCCeEEEeCCC-----CHHHHHHHHHHcCCcccCEEEE-C---C---E
Confidence 345567788888754 445542344344445541 222 234545456789998854 3 4 2
Q ss_pred EEeCCCChHHHH
Q 036413 229 KWCGMVDPVSLL 240 (346)
Q Consensus 229 ~~~G~~~~~~~i 240 (346)
.+.| .++..+.
T Consensus 60 ~i~g-~~~~~l~ 70 (73)
T cd02976 60 HLSG-FRPDKLR 70 (73)
T ss_pred EEec-CCHHHHH
Confidence 4455 4555443
No 241
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=97 Score=33.58 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=36.9
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
...+.|...+++ |-+..+|+.-|.+.|.|+|.|+.=+|.+..
T Consensus 634 ~~e~~v~si~sm--Gf~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 634 VDEESVASIVSM--GFSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred CChhHheeeeee--cCcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 345678888888 999999999999999999999999998764
No 242
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=21.79 E-value=1.1e+02 Score=23.59 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 26 EETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 26 ~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
-+.|..+|+..|=++..||.+||..
T Consensus 13 K~~a~~il~~~Glt~s~ai~~fl~q 37 (83)
T PF04221_consen 13 KEEAEAILEELGLTLSDAINMFLKQ 37 (83)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4689999999999999999999974
No 243
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=21.66 E-value=1.2e+02 Score=22.53 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.6
Q ss_pred CCccCCcccchhhcCCCceeEEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl~ 343 (346)
+.| .+...|++++|+++.++++
T Consensus 47 k~L-~D~~~~L~~~gi~~~~~l~ 68 (71)
T cd01796 47 REL-VDNKRLLALYGVKDGDLVV 68 (71)
T ss_pred eEc-cCCcccHHHcCCCCCCEEE
Confidence 445 4445799999999766654
No 244
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=20.94 E-value=2.2e+02 Score=23.04 Aligned_cols=49 Identities=8% Similarity=0.071 Sum_probs=29.2
Q ss_pred CeeEEEEEcCCCcccc-------------------C---CcceEEecCCCCCCCCccCCcccchhhcCCC-ceeEEEE
Q 036413 290 LVCRIGVRLPDGQEAN-------------------Q---TRQFRLTRPDPGAPKPLDYNSKMTFQESGLN-NSVILVT 344 (346)
Q Consensus 290 ~~trIqiRlpdG~ri~-------------------~---~~~f~l~~~~P~~~~~l~~~~d~TieeagL~-n~~vl~~ 344 (346)
++-.|-||..+|+.+. . ....+|+. - ++.|.+ +.||+++||+ +++|.+.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~--~--Gk~L~D--~~tL~dy~I~~~stL~l~ 97 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW--N--NMELED--EYCLNDYNISEGCTLKLV 97 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE--C--CEECCC--CCcHHHcCCCCCCEEEEE
Confidence 3567888888887640 0 12344442 2 255633 4799999999 5555554
No 245
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=20.90 E-value=2e+02 Score=21.86 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=14.3
Q ss_pred CCccCCcccchhhcCCCce-eEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~ 343 (346)
+.| +.+.||+++|+++. +|.+
T Consensus 50 k~L--~D~~tL~~y~i~~~~~i~l 71 (78)
T cd01797 50 KQM--EDGHTLFDYNVGLNDIIQL 71 (78)
T ss_pred EEC--CCCCCHHHcCCCCCCEEEE
Confidence 455 33579999999954 4444
No 246
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=20.51 E-value=3e+02 Score=19.85 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=28.8
Q ss_pred cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 154 QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 154 ~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
..++|..|... +++|++.+.=+-..+++. ..++..+...++..++|.| +|+
T Consensus 7 s~~~Cp~C~~a----------k~~L~~~~i~~~~~~v~~-----~~~~~~~~~~~g~~~vP~i-fi~ 57 (72)
T cd03029 7 TKPGCPFCARA----------KAALQENGISYEEIPLGK-----DITGRSLRAVTGAMTVPQV-FID 57 (72)
T ss_pred ECCCCHHHHHH----------HHHHHHcCCCcEEEECCC-----ChhHHHHHHHhCCCCcCeE-EEC
Confidence 44678888554 555551222222334442 3345566666677899998 566
No 247
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=20.47 E-value=2.3e+02 Score=26.56 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=58.8
Q ss_pred HHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-----cEEEEEeecCC---------CCCC-------
Q 036413 138 AKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-----NFIFWQVYDDD---------DDDD------- 196 (346)
Q Consensus 138 A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-----nFVfw~~~~~~---------~~~~------- 196 (346)
++.......|-.++.+.|++|+-|+.|..+ +..+++ . .++.+.+-... -.+|
T Consensus 109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~------l~~~~~-~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~ 181 (251)
T PRK11657 109 WILDGKADAPRIVYVFADPNCPYCKQFWQQ------ARPWVD-SGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQE 181 (251)
T ss_pred CccccCCCCCeEEEEEECCCChhHHHHHHH------HHHHhh-cCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHH
Confidence 455566677888888899999999888533 344444 2 22322210000 0000
Q ss_pred -----------C----Ch-------HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 197 -----------D----DS-------ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 197 -----------~----~~-------eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
. +. +..++...+++..-|++.+.|. +| .+.+..|..++++|.+.|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~-~G-~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 182 YEASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK-DG-TLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred HHHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CC-CEEEecCCCCHHHHHHHh
Confidence 0 11 1233556777899999999995 46 455668998888777665
No 248
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=20.44 E-value=1.1e+02 Score=21.33 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=32.9
Q ss_pred CHHHHHHHhhhc--CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 134 SFEKAKDVGSDE--NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 134 sf~~A~~~Ak~~--~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
|.++|++.|++. ++.+.+.+.... +.-..|.+.+. +. -..+
T Consensus 3 s~~~A~~~A~~~~~~~~~~~~~~~~~-----------------------~~~~~Y~v~~~------~~--------~~~~ 45 (64)
T PF03413_consen 3 SEEQAVEIALKQYPGKVISVELEEDE-----------------------NGRLVYEVEVV------SD--------DDPD 45 (64)
T ss_dssp -HHHHHHHHHCCCCCEEEEEEEECC------------------------TCEEEEEEEEE------BT--------TSTT
T ss_pred CHHHHHHHHHHHCCCCEEEEEEcccc-----------------------CCcEEEEEEEE------EE--------ecCC
Confidence 678999999887 444444443311 24455666555 20 0011
Q ss_pred CCceEEEEeCCCCceEEEE
Q 036413 212 SLPVVLVIDPITGEKMRKW 230 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~ 230 (346)
.--+-..||+.||+.+..|
T Consensus 46 ~~~~~v~VDa~tG~Il~~~ 64 (64)
T PF03413_consen 46 GGEYEVYVDAYTGEILSSY 64 (64)
T ss_dssp TEEEEEEEETTT--EEEEE
T ss_pred CCEEEEEEECCCCeEEEeC
Confidence 1226677999999998765
No 249
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.26 E-value=1.5e+02 Score=19.12 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=14.9
Q ss_pred ceEEEEeCCCCceEEEEe
Q 036413 214 PVVLVIDPITGEKMRKWC 231 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~ 231 (346)
-+|.-||..||++++...
T Consensus 10 g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp SEEEEEETTTTSEEEEEE
T ss_pred CEEEEEECCCCCEEEeee
Confidence 468889999999998764
No 250
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.02 E-value=2.3e+02 Score=22.37 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=50.8
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCcc----cccccc-----------ccCCCHHHHHHhccCcEEEEEeecCCCCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFT----SHTLNR-----------DTWADEAVSQTIRASNFIFWQVYDDDDDDD 196 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~----c~~lnR-----------dvw~~~~V~~~i~~~nFVfw~~~~~~~~~~ 196 (346)
.-+..+|++.-.+.+.+.++.+.+.+.+- -.-+.+ ..|.+..|.++++ .+++......+..+
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~~~~~~~~-- 85 (126)
T cd04640 9 DTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMT-PKEDLKALDLEELE-- 85 (126)
T ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcC-chhhhccccHHHhc--
Confidence 44677888766555544444444433322 111111 2345556888888 77755433211000
Q ss_pred CChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 197 DDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 197 ~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
............-..++++.|++-..|. ..|.++..+++.
T Consensus 86 -~~~l~~~l~~m~~~~~~~lpVvd~~~~~----~~G~it~~di~~ 125 (126)
T cd04640 86 -NASVGDVVETLKASGRQHALVVDREHHQ----IRGIISTSDIAR 125 (126)
T ss_pred -cCcHHHHHHHHHHCCCceEEEEECCCCE----EEEEEeHHHHhh
Confidence 1122333333333567888899842133 347677666653
Done!