Query 036413
Match_columns 346
No_of_seqs 261 out of 575
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 21:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dlx_A UBX domain-containing p 100.0 1.1E-30 3.8E-35 227.1 12.3 134 111-252 7-140 (153)
2 2ec4_A FAS-associated factor 1 100.0 2.6E-30 8.8E-35 230.2 12.5 137 111-254 16-174 (178)
3 2cr5_A Reproduction 8; UBX dom 99.4 5.1E-13 1.7E-17 109.4 9.0 67 275-344 8-95 (109)
4 3f9u_A Putative exported cytoc 99.3 7.8E-13 2.7E-17 114.2 4.7 117 130-250 31-168 (172)
5 1v92_A NSFL1 cofactor P47; 3-h 99.3 2.3E-12 7.7E-17 89.3 5.1 43 8-51 3-45 (46)
6 3e21_A HFAF1, FAS-associated f 99.3 1.1E-12 3.8E-17 90.3 2.9 43 7-49 2-44 (45)
7 2kuc_A Putative disulphide-iso 99.3 2.3E-11 8E-16 99.5 10.4 111 131-249 12-122 (130)
8 2dal_A Protein KIAA0794; FAS a 99.2 1.2E-11 4.2E-16 91.2 6.1 45 8-53 13-57 (62)
9 2lst_A Thioredoxin; structural 98.9 9.3E-13 3.2E-17 108.1 0.0 109 136-251 9-119 (130)
10 2ju5_A Thioredoxin disulfide i 99.2 7.5E-11 2.6E-15 100.6 10.3 108 133-248 34-152 (154)
11 2dam_A ETEA protein; KIAA0887, 99.2 2E-11 6.7E-16 91.5 5.0 46 7-52 15-60 (67)
12 3ph9_A Anterior gradient prote 99.1 1.8E-11 6E-16 105.6 4.4 120 119-251 19-148 (151)
13 1s3s_G P47 protein; AAA ATPase 99.1 3.4E-11 1.2E-15 101.1 5.7 59 284-345 45-126 (127)
14 3ira_A Conserved protein; meth 99.1 1.8E-10 6.3E-15 101.5 6.8 108 131-248 24-144 (173)
15 2dzl_A Protein FAM100B; UBA-li 99.1 1.4E-10 4.8E-15 86.5 5.0 42 10-52 16-58 (66)
16 2dzk_A UBX domain-containing p 99.1 3.1E-10 1.1E-14 92.8 7.5 57 287-345 9-89 (109)
17 3qx1_A FAS-associated factor 1 99.0 3.4E-10 1.2E-14 88.1 7.1 55 288-344 4-80 (84)
18 3fk8_A Disulphide isomerase; A 99.0 6.3E-10 2.2E-14 91.5 7.6 105 133-245 16-130 (133)
19 2fwh_A Thiol:disulfide interch 99.0 1.6E-09 5.6E-14 89.7 8.9 113 124-245 10-125 (134)
20 1wj4_A KIAA0794 protein; UBX d 98.9 3.4E-09 1.2E-13 88.6 7.6 56 287-344 39-117 (124)
21 2l57_A Uncharacterized protein 98.7 8.7E-08 3E-12 77.8 9.1 99 141-250 21-119 (126)
22 1ep7_A Thioredoxin CH1, H-type 98.6 9.8E-08 3.4E-12 75.3 8.6 101 132-247 10-110 (112)
23 2dml_A Protein disulfide-isome 98.6 2.8E-07 9.5E-12 74.9 10.3 115 121-251 11-127 (130)
24 3zzx_A Thioredoxin; oxidoreduc 98.5 3.2E-07 1.1E-11 73.6 9.4 94 132-243 8-101 (105)
25 3qfa_C Thioredoxin; protein-pr 98.5 2.3E-07 7.9E-12 74.7 8.3 102 126-246 13-115 (116)
26 2vm1_A Thioredoxin, thioredoxi 98.5 2.1E-07 7.2E-12 73.9 7.9 101 131-249 13-115 (118)
27 1xfl_A Thioredoxin H1; AT3G510 98.5 2.7E-07 9.2E-12 75.4 8.7 98 131-246 23-122 (124)
28 3tco_A Thioredoxin (TRXA-1); d 98.5 4.5E-07 1.6E-11 70.6 9.5 99 131-247 10-108 (109)
29 3dml_A Putative uncharacterize 98.5 8.5E-08 2.9E-12 79.1 5.1 97 145-251 17-113 (116)
30 1ti3_A Thioredoxin H, PTTRXH1; 98.5 2.9E-07 1E-11 72.5 8.1 101 131-248 11-112 (113)
31 2voc_A Thioredoxin; electron t 98.5 4.1E-07 1.4E-11 72.4 8.8 98 131-247 7-104 (112)
32 3gnj_A Thioredoxin domain prot 98.5 7.4E-07 2.5E-11 69.9 10.1 92 143-248 19-110 (111)
33 2vlu_A Thioredoxin, thioredoxi 98.5 4.5E-07 1.5E-11 72.8 9.0 107 126-248 14-120 (122)
34 1w4v_A Thioredoxin, mitochondr 98.5 7.1E-07 2.4E-11 71.9 9.9 98 136-247 21-118 (119)
35 3die_A Thioredoxin, TRX; elect 98.5 4.7E-07 1.6E-11 70.4 8.2 97 130-245 8-104 (106)
36 1thx_A Thioredoxin, thioredoxi 98.5 7.8E-07 2.7E-11 70.1 9.6 100 132-248 14-113 (115)
37 3d22_A TRXH4, thioredoxin H-ty 98.5 4.5E-07 1.5E-11 74.8 8.5 105 130-251 30-135 (139)
38 1dby_A Chloroplast thioredoxin 98.5 7.4E-07 2.5E-11 69.6 9.1 98 136-247 9-106 (107)
39 2i4a_A Thioredoxin; acidophIle 98.5 5.9E-07 2E-11 69.9 8.4 97 132-245 9-105 (107)
40 2trx_A Thioredoxin; electron t 98.4 9.3E-07 3.2E-11 69.1 9.3 99 132-247 9-107 (108)
41 3p2a_A Thioredoxin 2, putative 98.4 1.1E-06 3.7E-11 73.4 10.2 103 131-251 44-146 (148)
42 2yzu_A Thioredoxin; redox prot 98.4 5.4E-07 1.9E-11 70.0 7.7 98 132-247 8-105 (109)
43 2e0q_A Thioredoxin; electron t 98.4 1.1E-06 3.9E-11 67.5 9.3 98 132-248 6-103 (104)
44 3d6i_A Monothiol glutaredoxin- 98.4 1E-06 3.4E-11 69.6 9.1 98 133-248 9-109 (112)
45 1nsw_A Thioredoxin, TRX; therm 98.4 2.3E-07 8E-12 72.3 5.2 95 133-245 8-102 (105)
46 3hxs_A Thioredoxin, TRXP; elec 98.4 6E-07 2.1E-11 74.0 7.9 90 145-248 50-139 (141)
47 2l5l_A Thioredoxin; structural 98.4 8.5E-07 2.9E-11 73.2 8.8 107 132-252 16-130 (136)
48 1t00_A Thioredoxin, TRX; redox 98.4 7.6E-07 2.6E-11 70.2 8.0 94 141-248 18-111 (112)
49 3hz4_A Thioredoxin; NYSGXRC, P 98.4 8.5E-07 2.9E-11 73.7 8.5 104 133-250 11-114 (140)
50 3m9j_A Thioredoxin; oxidoreduc 98.4 1E-06 3.5E-11 68.4 8.1 96 133-246 9-104 (105)
51 1fb6_A Thioredoxin M; electron 98.4 9.1E-07 3.1E-11 68.5 7.6 97 133-246 8-104 (105)
52 3ul3_B Thioredoxin, thioredoxi 98.4 6.5E-07 2.2E-11 73.0 7.1 114 115-244 13-126 (128)
53 2o8v_B Thioredoxin 1; disulfid 98.4 1.1E-06 3.7E-11 72.2 8.0 99 132-247 29-127 (128)
54 3f3q_A Thioredoxin-1; His TAG, 98.3 2E-06 6.8E-11 68.2 9.0 91 139-245 17-107 (109)
55 1xwb_A Thioredoxin; dimerizati 98.3 2.2E-06 7.4E-11 66.5 8.8 96 133-245 9-104 (106)
56 4euy_A Uncharacterized protein 98.3 5.2E-07 1.8E-11 70.9 5.2 89 143-247 15-104 (105)
57 1r26_A Thioredoxin; redox-acti 98.3 1.8E-06 6.2E-11 70.8 8.4 96 133-249 28-124 (125)
58 1x5d_A Protein disulfide-isome 98.3 2.8E-06 9.6E-11 68.8 9.3 103 132-250 14-119 (133)
59 3bq3_A Defective in cullin ned 98.3 3.2E-07 1.1E-11 86.1 3.9 44 8-52 13-56 (270)
60 1sen_A Thioredoxin-like protei 98.3 4.4E-07 1.5E-11 78.0 4.6 118 118-252 21-152 (164)
61 2i1u_A Thioredoxin, TRX, MPT46 98.3 2.2E-06 7.4E-11 68.4 8.2 92 139-244 23-114 (121)
62 2dj1_A Protein disulfide-isome 98.3 3.4E-06 1.2E-10 69.2 9.5 101 131-250 23-126 (140)
63 3uvt_A Thioredoxin domain-cont 98.3 5.3E-06 1.8E-10 64.8 10.2 95 130-245 10-109 (111)
64 3aps_A DNAJ homolog subfamily 98.3 1.7E-06 5.8E-11 69.4 7.3 104 134-251 9-116 (122)
65 2b5x_A YKUV protein, TRXY; thi 98.3 3.2E-06 1.1E-10 69.1 9.1 102 143-249 26-146 (148)
66 3apq_A DNAJ homolog subfamily 98.3 2.9E-06 9.8E-11 75.4 9.4 112 122-251 92-205 (210)
67 2lja_A Putative thiol-disulfid 98.3 5.4E-06 1.8E-10 68.6 10.3 100 143-252 27-147 (152)
68 1v98_A Thioredoxin; oxidoreduc 98.3 3.5E-06 1.2E-10 69.6 9.1 99 132-248 40-138 (140)
69 1syr_A Thioredoxin; SGPP, stru 98.3 2.3E-06 7.7E-11 67.9 7.5 96 130-245 14-109 (112)
70 2xc2_A Thioredoxinn; oxidoredu 98.2 3.6E-06 1.2E-10 67.1 8.7 94 133-246 22-116 (117)
71 1gh2_A Thioredoxin-like protei 98.2 4.5E-06 1.5E-10 65.4 8.9 97 132-247 9-106 (107)
72 2oe3_A Thioredoxin-3; electron 98.2 4.6E-06 1.6E-10 66.9 8.9 92 136-243 20-111 (114)
73 1wmj_A Thioredoxin H-type; str 98.2 3.6E-07 1.2E-11 74.0 2.1 101 131-249 21-123 (130)
74 3qou_A Protein YBBN; thioredox 98.2 6.6E-06 2.3E-10 76.0 11.0 102 130-247 12-113 (287)
75 2ppt_A Thioredoxin-2; thiredox 98.2 5.5E-06 1.9E-10 70.5 9.5 91 144-248 62-152 (155)
76 2j23_A Thioredoxin; immune pro 98.2 3.5E-06 1.2E-10 68.1 7.9 96 133-246 24-119 (121)
77 3dxb_A Thioredoxin N-terminall 98.2 2.8E-06 9.6E-11 76.3 7.9 103 131-250 18-120 (222)
78 2wz9_A Glutaredoxin-3; protein 98.2 4.2E-06 1.4E-10 70.6 8.3 99 132-249 20-119 (153)
79 2f9s_A Thiol-disulfide oxidore 98.2 5.2E-06 1.8E-10 68.9 8.5 99 142-249 22-139 (151)
80 1zzo_A RV1677; thioredoxin fol 98.2 4E-06 1.4E-10 67.4 7.5 93 142-248 21-135 (136)
81 4evm_A Thioredoxin family prot 98.2 9.3E-06 3.2E-10 64.9 9.5 99 142-245 18-136 (138)
82 2f51_A Thioredoxin; electron t 98.2 1.1E-05 3.8E-10 64.9 9.9 102 131-246 8-111 (118)
83 1lu4_A Soluble secreted antige 98.1 4.6E-06 1.6E-10 67.3 7.2 92 142-247 20-135 (136)
84 3cxg_A Putative thioredoxin; m 98.1 5.3E-06 1.8E-10 68.5 7.7 99 132-248 28-129 (133)
85 3erw_A Sporulation thiol-disul 98.1 4.9E-06 1.7E-10 67.7 7.3 93 141-243 30-144 (145)
86 1mek_A Protein disulfide isome 98.1 2.3E-06 7.7E-11 67.6 5.1 99 130-245 12-114 (120)
87 2l6c_A Thioredoxin; oxidoreduc 98.1 6.4E-06 2.2E-10 65.4 7.6 96 131-248 9-106 (110)
88 3raz_A Thioredoxin-related pro 98.1 1E-05 3.6E-10 67.2 9.3 105 140-251 18-143 (151)
89 3gix_A Thioredoxin-like protei 98.1 6.8E-06 2.3E-10 69.5 8.2 98 134-249 13-122 (149)
90 2vim_A Thioredoxin, TRX; thior 98.1 9.9E-06 3.4E-10 62.4 8.5 95 133-246 8-103 (104)
91 1kng_A Thiol:disulfide interch 98.1 8.4E-06 2.9E-10 67.6 8.6 95 143-249 39-153 (156)
92 3kh7_A Thiol:disulfide interch 98.1 2.9E-06 1E-10 73.2 5.9 98 140-250 52-169 (176)
93 3h79_A Thioredoxin-like protei 98.1 1.9E-05 6.4E-10 64.0 10.0 96 130-245 20-125 (127)
94 2yj7_A LPBCA thioredoxin; oxid 97.4 4.2E-07 1.5E-11 70.2 0.0 93 140-246 13-105 (106)
95 1oaz_A Thioredoxin 1; immune s 98.1 3E-06 1E-10 69.2 5.0 97 132-245 10-120 (123)
96 3or5_A Thiol:disulfide interch 98.1 1.7E-05 5.9E-10 66.2 9.8 102 142-251 30-154 (165)
97 2pu9_C TRX-F, thioredoxin F-ty 98.1 1.9E-05 6.4E-10 62.2 9.0 99 131-247 11-110 (111)
98 3lor_A Thiol-disulfide isomera 98.0 2.2E-05 7.4E-10 65.4 9.7 102 140-249 24-156 (160)
99 3hcz_A Possible thiol-disulfid 98.0 9.9E-06 3.4E-10 66.3 7.3 98 142-248 27-146 (148)
100 3fkf_A Thiol-disulfide oxidore 98.0 1.3E-05 4.5E-10 65.5 8.0 92 144-248 31-146 (148)
101 1zma_A Bacterocin transport ac 98.0 1.9E-05 6.4E-10 63.1 8.3 89 143-243 26-116 (118)
102 2b1k_A Thiol:disulfide interch 98.0 6.5E-06 2.2E-10 69.6 5.7 97 144-249 49-161 (168)
103 2l5o_A Putative thioredoxin; s 98.0 1.6E-05 5.3E-10 65.8 7.9 104 144-251 26-144 (153)
104 3gl3_A Putative thiol:disulfid 98.0 4.4E-05 1.5E-09 63.0 10.4 103 139-250 21-144 (152)
105 3emx_A Thioredoxin; structural 98.0 1.5E-05 5.1E-10 65.7 7.5 106 132-251 23-129 (135)
106 3q6o_A Sulfhydryl oxidase 1; p 98.0 3.5E-05 1.2E-09 69.8 10.4 117 120-251 5-130 (244)
107 1faa_A Thioredoxin F; electron 98.0 3.2E-05 1.1E-09 62.0 8.9 99 130-246 23-122 (124)
108 3lwa_A Secreted thiol-disulfid 98.0 3.9E-05 1.3E-09 65.9 10.0 100 143-249 56-182 (183)
109 2dbc_A PDCL2, unnamed protein 97.9 1.5E-05 5.3E-10 65.9 6.8 84 131-234 16-100 (135)
110 2lrn_A Thiol:disulfide interch 97.9 6.6E-05 2.3E-09 62.3 10.5 95 144-250 27-143 (152)
111 1qgv_A Spliceosomal protein U5 97.9 4.2E-05 1.4E-09 64.1 9.2 100 134-249 13-122 (142)
112 2dj0_A Thioredoxin-related tra 97.9 2.2E-05 7.6E-10 64.5 7.1 93 131-238 13-111 (137)
113 3eyt_A Uncharacterized protein 97.9 2.7E-05 9.4E-10 64.8 7.8 103 140-249 22-153 (158)
114 2av4_A Thioredoxin-like protei 97.9 3.7E-05 1.3E-09 66.6 8.3 99 133-249 30-140 (160)
115 3kcm_A Thioredoxin family prot 97.9 4.5E-05 1.5E-09 63.1 8.4 100 142-250 24-145 (154)
116 2qsi_A Putative hydrogenase ex 97.9 0.00016 5.6E-09 61.1 11.9 112 117-249 9-124 (137)
117 2ggt_A SCO1 protein homolog, m 97.8 8.4E-05 2.9E-09 62.0 10.0 100 145-250 22-163 (164)
118 2h30_A Thioredoxin, peptide me 97.8 1.6E-05 5.5E-10 66.5 5.3 102 140-248 32-156 (164)
119 1jfu_A Thiol:disulfide interch 97.8 0.00011 3.9E-09 63.0 10.2 100 143-249 57-181 (186)
120 3t58_A Sulfhydryl oxidase 1; o 97.8 0.0001 3.5E-09 75.0 11.4 119 120-251 5-130 (519)
121 2djj_A PDI, protein disulfide- 97.8 2.5E-05 8.6E-10 62.1 5.5 87 144-246 23-115 (121)
122 3hdc_A Thioredoxin family prot 97.8 5.8E-05 2E-09 63.2 8.0 98 142-244 37-148 (158)
123 3ed3_A Protein disulfide-isome 97.8 6.3E-05 2.2E-09 70.9 8.7 101 132-247 24-141 (298)
124 1x5e_A Thioredoxin domain cont 97.7 4.8E-05 1.6E-09 61.3 6.2 97 131-247 13-109 (126)
125 3eur_A Uncharacterized protein 97.7 0.00014 4.7E-09 59.7 9.0 84 143-232 28-132 (142)
126 2rli_A SCO2 protein homolog, m 97.7 0.00025 8.5E-09 59.7 10.5 101 144-250 24-166 (171)
127 2lrt_A Uncharacterized protein 97.7 9.8E-05 3.3E-09 61.8 7.8 90 145-244 34-144 (152)
128 3ia1_A THIO-disulfide isomeras 97.7 7.4E-05 2.5E-09 61.8 6.9 96 147-250 31-146 (154)
129 3ewl_A Uncharacterized conserv 97.7 0.00014 4.7E-09 59.3 8.4 94 142-244 23-137 (142)
130 3idv_A Protein disulfide-isome 97.7 0.00014 4.7E-09 64.8 8.7 101 130-249 20-123 (241)
131 2qgv_A Hydrogenase-1 operon pr 97.7 0.00025 8.4E-09 60.2 9.7 110 116-248 11-125 (140)
132 1wou_A Thioredoxin -related pr 97.6 4E-05 1.4E-09 62.1 4.6 96 132-248 12-121 (123)
133 2dj3_A Protein disulfide-isome 97.6 6.2E-05 2.1E-09 61.0 5.7 95 144-250 23-120 (133)
134 1nho_A Probable thioredoxin; b 97.6 0.00015 5.1E-09 53.7 7.3 81 149-247 4-84 (85)
135 3ha9_A Uncharacterized thiored 97.6 0.00027 9.2E-09 59.3 9.5 96 142-247 33-163 (165)
136 3fw2_A Thiol-disulfide oxidore 97.6 0.00032 1.1E-08 58.0 9.6 96 143-249 30-149 (150)
137 2es7_A Q8ZP25_salty, putative 97.6 0.00013 4.5E-09 61.4 7.2 99 130-249 22-126 (142)
138 1a8l_A Protein disulfide oxido 97.6 0.00037 1.3E-08 61.6 10.3 90 145-247 133-225 (226)
139 1i5g_A Tryparedoxin II; electr 97.5 0.00032 1.1E-08 57.4 8.6 82 141-230 23-126 (144)
140 1fo5_A Thioredoxin; disulfide 97.5 0.00029 1E-08 52.1 7.6 82 147-246 3-84 (85)
141 1z96_A DNA-damage, UBA-domain 97.5 0.00013 4.3E-09 48.2 4.8 39 8-48 2-40 (40)
142 1a0r_P Phosducin, MEKA, PP33; 97.5 6.1E-05 2.1E-09 69.5 4.2 103 132-252 120-226 (245)
143 3drn_A Peroxiredoxin, bacterio 97.5 0.00038 1.3E-08 58.6 8.4 94 145-248 27-145 (161)
144 3s9f_A Tryparedoxin; thioredox 97.5 0.00032 1.1E-08 59.7 8.0 82 140-229 42-145 (165)
145 1o8x_A Tryparedoxin, TRYX, TXN 97.4 0.00043 1.5E-08 56.9 8.4 83 140-230 22-126 (146)
146 1wj7_A Hypothetical protein (R 97.4 0.00016 5.6E-09 57.9 5.4 44 7-51 36-79 (104)
147 3f8u_A Protein disulfide-isome 97.4 0.00018 6.2E-09 71.3 6.9 103 131-248 7-109 (481)
148 2hyx_A Protein DIPZ; thioredox 97.4 0.00037 1.3E-08 67.5 8.7 102 144-249 80-200 (352)
149 2ywi_A Hypothetical conserved 97.4 0.00023 8E-09 61.4 6.3 104 145-252 44-178 (196)
150 2r2j_A Thioredoxin domain-cont 97.4 0.00059 2E-08 66.0 9.7 102 131-249 11-118 (382)
151 2b5e_A Protein disulfide-isome 97.4 0.00056 1.9E-08 68.4 9.8 100 130-247 19-121 (504)
152 3cmi_A Peroxiredoxin HYR1; thi 97.4 0.00055 1.9E-08 58.1 8.4 98 144-249 30-169 (171)
153 1o73_A Tryparedoxin; electron 97.4 0.00045 1.5E-08 56.3 7.4 83 140-230 22-126 (144)
154 2p5q_A Glutathione peroxidase 97.3 0.00088 3E-08 56.0 9.2 101 144-248 30-168 (170)
155 2vup_A Glutathione peroxidase- 97.3 0.00069 2.4E-08 58.8 8.4 102 144-249 46-186 (190)
156 1xvw_A Hypothetical protein RV 97.3 0.00062 2.1E-08 56.7 7.6 91 145-248 34-156 (160)
157 2cvb_A Probable thiol-disulfid 97.3 0.00056 1.9E-08 58.7 7.5 101 144-251 31-162 (188)
158 1oai_A Nuclear RNA export fact 97.3 0.0003 1E-08 50.9 4.8 42 8-50 5-46 (59)
159 3iv4_A Putative oxidoreductase 97.3 0.0007 2.4E-08 55.2 7.5 88 142-242 20-110 (112)
160 2trc_P Phosducin, MEKA, PP33; 97.3 0.00039 1.3E-08 62.7 6.4 102 131-251 106-212 (217)
161 2bmx_A Alkyl hydroperoxidase C 97.2 0.0011 3.9E-08 57.6 9.1 94 145-248 44-170 (195)
162 3evi_A Phosducin-like protein 97.2 0.00057 1.9E-08 55.8 6.6 107 123-250 2-112 (118)
163 1zof_A Alkyl hydroperoxide-red 97.2 0.00097 3.3E-08 58.1 8.5 93 145-247 32-160 (198)
164 3idv_A Protein disulfide-isome 97.2 0.0013 4.5E-08 58.3 9.4 100 130-247 135-236 (241)
165 2v1m_A Glutathione peroxidase; 97.2 0.0017 5.7E-08 54.3 9.5 102 144-249 29-168 (169)
166 1sji_A Calsequestrin 2, calseq 97.2 0.0013 4.6E-08 62.6 9.9 96 132-245 18-119 (350)
167 4fo5_A Thioredoxin-like protei 97.2 0.00028 9.6E-09 57.8 4.5 88 141-243 27-140 (143)
168 3f8u_A Protein disulfide-isome 97.2 0.00083 2.8E-08 66.5 8.7 102 130-248 357-461 (481)
169 1we0_A Alkyl hydroperoxide red 97.2 0.0012 4.2E-08 56.8 8.7 94 145-248 30-157 (187)
170 3uem_A Protein disulfide-isome 97.2 0.00069 2.4E-08 64.5 7.7 101 130-250 254-355 (361)
171 2k6v_A Putative cytochrome C o 97.2 0.0009 3.1E-08 56.1 7.3 93 143-245 32-170 (172)
172 3us3_A Calsequestrin-1; calciu 97.1 0.0018 6.1E-08 62.5 9.4 103 130-248 18-124 (367)
173 3dwv_A Glutathione peroxidase- 97.1 0.0019 6.6E-08 55.8 8.7 99 144-249 44-184 (187)
174 2h01_A 2-Cys peroxiredoxin; th 97.0 0.0023 7.7E-08 55.4 8.8 93 145-247 30-158 (192)
175 3kp8_A Vkorc1/thioredoxin doma 97.0 0.00037 1.3E-08 55.6 3.3 85 137-242 3-89 (106)
176 2jp7_A MRNA export factor MEX6 97.0 0.0006 2.1E-08 49.0 4.0 42 8-50 4-45 (57)
177 3kij_A Probable glutathione pe 97.0 0.003 1E-07 54.1 9.3 102 144-249 36-171 (180)
178 1ilo_A Conserved hypothetical 97.0 0.0023 8E-08 46.4 7.3 73 149-242 2-75 (77)
179 1a8l_A Protein disulfide oxido 97.0 0.0046 1.6E-07 54.4 10.6 92 144-248 20-113 (226)
180 1zye_A Thioredoxin-dependent p 97.0 0.0024 8.3E-08 57.1 8.8 94 145-248 55-185 (220)
181 2ywm_A Glutaredoxin-like prote 97.0 0.0031 1.1E-07 55.9 9.4 88 143-249 133-221 (229)
182 1uul_A Tryparedoxin peroxidase 97.0 0.0018 6E-08 56.8 7.6 93 145-247 35-164 (202)
183 1qmv_A Human thioredoxin perox 96.9 0.001 3.6E-08 57.9 5.9 93 145-247 33-162 (197)
184 2knz_A Ubiquilin-4; cytoplasm, 96.9 0.0023 7.8E-08 45.1 6.3 43 8-51 9-51 (53)
185 2i81_A 2-Cys peroxiredoxin; st 96.8 0.0033 1.1E-07 56.0 8.2 93 145-247 51-179 (213)
186 2obi_A PHGPX, GPX-4, phospholi 96.8 0.0024 8E-08 54.8 6.6 97 144-244 45-180 (183)
187 2b7k_A SCO1 protein; metalloch 96.7 0.006 2E-07 53.4 9.1 103 144-252 39-183 (200)
188 3apo_A DNAJ homolog subfamily 96.7 0.00092 3.1E-08 70.4 4.3 97 132-246 123-219 (780)
189 2djk_A PDI, protein disulfide- 96.7 0.0071 2.4E-07 49.4 8.8 90 144-249 21-116 (133)
190 2f8a_A Glutathione peroxidase 96.6 0.0071 2.4E-07 53.6 8.9 102 142-247 43-206 (208)
191 2dah_A Ubiquilin-3; UBA domain 96.6 0.0023 7.9E-08 45.4 4.4 43 9-52 8-50 (54)
192 3u5r_E Uncharacterized protein 96.6 0.0046 1.6E-07 55.0 7.5 101 145-252 57-191 (218)
193 2g3q_A Protein YBL047C; endocy 96.6 0.0037 1.3E-07 41.9 5.2 39 10-50 4-42 (43)
194 4gew_A 5'-tyrosyl-DNA phosphod 96.6 0.00093 3.2E-08 64.6 3.1 42 9-51 44-85 (362)
195 1ify_A HHR23A, UV excision rep 96.6 0.0032 1.1E-07 43.6 5.0 41 8-50 6-46 (49)
196 2bwb_A Ubiquitin-like protein 96.6 0.0033 1.1E-07 43.0 5.0 39 10-49 7-45 (46)
197 2ls5_A Uncharacterized protein 95.6 0.00036 1.2E-08 58.1 0.0 93 139-240 26-140 (159)
198 2p31_A CL683, glutathione pero 96.6 0.0017 5.9E-08 55.8 4.3 99 144-246 47-179 (181)
199 1vg5_A RSGI RUH-014, rhomboid 96.6 0.0035 1.2E-07 47.2 5.5 43 8-52 27-69 (73)
200 2gs3_A PHGPX, GPX-4, phospholi 96.5 0.0035 1.2E-07 53.9 6.3 99 144-246 47-184 (185)
201 1xzo_A BSSCO, hypothetical pro 96.5 0.015 5.1E-07 48.6 10.0 98 145-248 32-172 (174)
202 3apo_A DNAJ homolog subfamily 96.5 0.0027 9.1E-08 66.9 6.0 117 118-250 649-769 (780)
203 1dv0_A DNA repair protein HHR2 96.4 0.0016 5.4E-08 44.8 2.7 42 8-51 2-43 (47)
204 1z6n_A Hypothetical protein PA 96.4 0.0074 2.5E-07 52.0 7.3 86 143-245 51-140 (167)
205 2jy5_A Ubiquilin-1; UBA, alter 96.4 0.0054 1.9E-07 43.0 5.1 41 9-50 11-51 (52)
206 3ztl_A Thioredoxin peroxidase; 96.3 0.005 1.7E-07 55.0 6.2 88 144-244 67-194 (222)
207 4f9z_D Endoplasmic reticulum r 96.3 0.031 1.1E-06 49.7 11.4 110 129-248 114-225 (227)
208 1wr1_B Ubiquitin-like protein 96.3 0.0057 1.9E-07 44.0 5.1 41 9-50 16-56 (58)
209 1veg_A NEDD8 ultimate buster-1 96.3 0.0035 1.2E-07 48.3 4.2 42 10-53 29-70 (83)
210 3ga4_A Dolichyl-diphosphooligo 96.3 0.013 4.4E-07 51.4 8.2 90 117-222 9-113 (178)
211 3qcp_A QSOX from trypanosoma b 96.2 0.0054 1.9E-07 61.6 6.4 105 131-248 29-152 (470)
212 2r37_A Glutathione peroxidase 96.2 0.051 1.7E-06 48.2 12.1 103 142-249 34-194 (207)
213 2hls_A Protein disulfide oxido 96.2 0.016 5.5E-07 52.6 8.8 88 145-249 137-227 (243)
214 2b5e_A Protein disulfide-isome 96.1 0.0026 8.9E-08 63.5 3.4 99 132-248 365-467 (504)
215 2cwb_A Chimera of immunoglobul 96.1 0.0081 2.8E-07 48.5 5.6 41 11-52 67-107 (108)
216 2lus_A Thioredoxion; CR-Trp16, 95.1 0.00093 3.2E-08 54.1 0.0 80 145-229 24-124 (143)
217 1vej_A Riken cDNA 4931431F19; 96.1 0.011 3.7E-07 44.6 5.8 43 9-52 28-70 (74)
218 1wji_A Tudor domain containing 96.0 0.01 3.4E-07 43.4 5.3 42 9-52 8-49 (63)
219 3gkn_A Bacterioferritin comigr 96.0 0.016 5.5E-07 48.2 7.4 93 145-248 34-158 (163)
220 3a2v_A Probable peroxiredoxin; 96.0 0.015 5E-07 53.6 7.7 93 145-247 32-161 (249)
221 2l2d_A OTU domain-containing p 95.9 0.0096 3.3E-07 43.3 4.5 40 9-49 16-55 (73)
222 4gqc_A Thiol peroxidase, perox 95.8 0.041 1.4E-06 46.6 9.2 95 144-248 31-160 (164)
223 2jsy_A Probable thiol peroxida 95.8 0.032 1.1E-06 46.6 8.3 96 145-247 43-166 (167)
224 2i3y_A Epididymal secretory gl 95.8 0.076 2.6E-06 47.4 11.2 103 142-249 52-212 (215)
225 1wiv_A UBP14, ubiquitin-specif 95.8 0.016 5.5E-07 43.5 5.5 42 9-52 28-69 (73)
226 1xvq_A Thiol peroxidase; thior 95.7 0.027 9.2E-07 47.9 7.6 75 145-232 43-147 (175)
227 2dkl_A Trinucleotide repeat co 95.7 0.019 6.5E-07 44.4 5.9 42 10-53 21-62 (85)
228 2c0g_A ERP29 homolog, windbeut 95.6 0.043 1.5E-06 50.4 9.1 99 130-248 21-132 (248)
229 3uem_A Protein disulfide-isome 95.6 0.044 1.5E-06 51.8 9.4 112 123-249 115-231 (361)
230 2qc7_A ERP31, ERP28, endoplasm 95.6 0.03 1E-06 51.2 7.8 97 131-246 11-117 (240)
231 4g2e_A Peroxiredoxin; redox pr 95.5 0.045 1.6E-06 45.8 8.2 91 144-244 28-154 (157)
232 2ywm_A Glutaredoxin-like prote 95.5 0.047 1.6E-06 48.0 8.6 91 144-248 18-115 (229)
233 4hde_A SCO1/SENC family lipopr 95.5 0.13 4.5E-06 43.6 11.1 33 214-247 135-169 (170)
234 2dak_A Ubiquitin carboxyl-term 95.4 0.015 5E-07 42.3 4.0 42 9-52 8-49 (63)
235 2kzr_A Ubiquitin thioesterase 95.3 0.0099 3.4E-07 45.4 2.9 49 293-343 2-73 (86)
236 3me7_A Putative uncharacterize 95.2 0.073 2.5E-06 45.1 8.6 102 145-252 27-166 (170)
237 2c0d_A Thioredoxin peroxidase 95.2 0.097 3.3E-06 46.7 9.6 93 145-247 55-183 (221)
238 2pn8_A Peroxiredoxin-4; thiore 95.0 0.075 2.6E-06 46.9 8.3 90 145-247 47-176 (211)
239 2yzh_A Probable thiol peroxida 94.9 0.13 4.5E-06 43.1 9.4 32 213-245 133-169 (171)
240 1wgn_A UBAP1, ubiquitin associ 94.9 0.037 1.3E-06 40.0 4.7 44 8-53 17-60 (63)
241 2ooa_A E3 ubiquitin-protein li 94.9 0.048 1.7E-06 38.0 5.1 37 11-49 12-48 (52)
242 1whc_A RSGI RUH-027, UBA/UBX 3 94.8 0.037 1.3E-06 40.4 4.7 42 10-53 9-51 (64)
243 2dai_A Ubadc1, ubiquitin assoc 94.8 0.044 1.5E-06 42.1 5.3 41 10-52 29-69 (83)
244 1wjk_A C330018D20RIK protein; 94.7 0.064 2.2E-06 41.8 6.3 80 146-246 15-94 (100)
245 2dna_A Unnamed protein product 94.6 0.068 2.3E-06 39.4 5.8 42 10-52 19-60 (67)
246 1n8j_A AHPC, alkyl hydroperoxi 94.6 0.17 5.8E-06 43.4 9.4 93 145-247 29-155 (186)
247 2a4v_A Peroxiredoxin DOT5; yea 94.6 0.11 3.9E-06 42.9 8.0 92 146-249 35-155 (159)
248 3tjj_A Peroxiredoxin-4; thiore 94.6 0.055 1.9E-06 49.6 6.4 91 145-245 90-217 (254)
249 2cpw_A CBL-interacting protein 94.5 0.065 2.2E-06 39.1 5.4 40 11-52 20-60 (64)
250 3qpm_A Peroxiredoxin; oxidored 94.4 0.066 2.3E-06 48.5 6.6 88 145-245 76-203 (240)
251 2ekk_A UBA domain from E3 ubiq 94.3 0.064 2.2E-06 36.5 4.7 39 9-50 8-46 (47)
252 3ixr_A Bacterioferritin comigr 94.2 0.12 4E-06 44.1 7.5 93 144-246 49-176 (179)
253 2d9s_A CBL E3 ubiquitin protei 94.1 0.084 2.9E-06 37.0 5.0 38 11-50 10-47 (53)
254 2dag_A Ubiquitin carboxyl-term 94.0 0.089 3E-06 39.5 5.4 43 9-53 8-51 (74)
255 1ttz_A Conserved hypothetical 93.9 0.11 3.7E-06 39.8 5.8 75 150-248 3-77 (87)
256 2cp9_A EF-TS, EF-TSMT, elongat 93.7 0.063 2.1E-06 39.3 3.9 38 11-49 10-47 (64)
257 1otr_A Protein CUE2; protein-p 93.7 0.089 3E-06 36.4 4.4 43 9-51 3-45 (49)
258 2e7p_A Glutaredoxin; thioredox 93.7 0.066 2.3E-06 41.8 4.4 67 147-232 20-89 (116)
259 1vdl_A Ubiquitin carboxyl-term 93.6 0.12 4E-06 38.7 5.3 42 10-51 24-65 (80)
260 2cp8_A NEXT to BRCA1 gene 1 pr 93.6 0.085 2.9E-06 37.2 4.3 42 11-53 10-51 (54)
261 1jkg_B TAP; NTF2-like domain, 93.5 0.013 4.5E-07 54.0 0.0 43 8-51 196-238 (250)
262 3p7x_A Probable thiol peroxida 93.4 0.23 7.8E-06 41.4 7.7 41 203-244 113-164 (166)
263 1psq_A Probable thiol peroxida 93.2 0.54 1.8E-05 39.0 9.7 88 145-245 41-162 (163)
264 1v58_A Thiol:disulfide interch 92.9 0.21 7.1E-06 45.1 7.0 102 142-251 93-236 (241)
265 1eej_A Thiol:disulfide interch 92.2 0.39 1.3E-05 42.3 7.8 93 143-248 83-211 (216)
266 1vek_A UBP14, ubiquitin-specif 92.1 0.24 8.1E-06 38.1 5.4 42 10-53 29-71 (84)
267 3zrd_A Thiol peroxidase; oxido 92.0 0.84 2.9E-05 39.7 9.6 89 142-243 74-199 (200)
268 1wgl_A TOLL-interacting protei 91.5 0.36 1.2E-05 34.5 5.4 43 10-52 9-51 (59)
269 1q98_A Thiol peroxidase, TPX; 91.3 0.7 2.4E-05 38.4 8.0 81 145-232 42-148 (165)
270 2lva_A Ubiquitin carboxyl-term 90.1 0.046 1.6E-06 44.8 0.0 42 10-51 18-59 (129)
271 3kp9_A Vkorc1/thioredoxin doma 90.4 0.3 1E-05 45.9 5.3 88 132-241 185-273 (291)
272 2lbc_A Ubiquitin carboxyl-term 90.3 0.45 1.5E-05 38.9 5.7 42 9-52 77-118 (126)
273 2v2g_A Peroxiredoxin 6; oxidor 89.8 0.38 1.3E-05 43.4 5.3 90 147-246 30-163 (233)
274 2hls_A Protein disulfide oxido 89.5 1.1 3.9E-05 40.1 8.3 87 143-248 22-117 (243)
275 1tp9_A Peroxiredoxin, PRX D (t 89.3 0.71 2.4E-05 38.4 6.3 18 145-162 34-52 (162)
276 3gyk_A 27KDA outer membrane pr 89.2 1.8 6.1E-05 36.0 8.8 40 202-248 134-173 (175)
277 4eo3_A Bacterioferritin comigr 89.2 1.4 4.6E-05 41.7 8.9 89 144-248 22-139 (322)
278 1nm3_A Protein HI0572; hybrid, 89.0 1.1 3.9E-05 39.6 7.8 89 145-244 32-163 (241)
279 2crn_A Ubash3A protein; compac 87.9 0.8 2.7E-05 33.2 4.9 42 10-53 9-51 (64)
280 1hyu_A AHPF, alkyl hydroperoxi 87.4 4.8 0.00016 40.1 12.1 81 144-245 115-197 (521)
281 3keb_A Probable thiol peroxida 87.4 5 0.00017 36.0 11.0 48 202-250 117-178 (224)
282 4ae4_A Ubiquitin-associated pr 87.0 1 3.4E-05 36.7 5.6 40 10-51 76-115 (118)
283 3bj5_A Protein disulfide-isome 86.8 3.5 0.00012 34.1 9.0 63 181-249 63-128 (147)
284 2fgx_A Putative thioredoxin; N 86.2 0.95 3.3E-05 36.0 4.9 77 148-243 30-106 (107)
285 2pjh_A Protein NPL4, nuclear p 84.7 0.32 1.1E-05 36.7 1.4 51 292-343 5-76 (80)
286 1t3b_A Thiol:disulfide interch 84.6 3 0.0001 36.4 8.0 88 144-244 84-207 (211)
287 2k8s_A Thioredoxin; dimer, str 84.5 0.99 3.4E-05 32.8 4.1 62 151-227 5-66 (80)
288 2juj_A E3 ubiquitin-protein li 84.5 1.7 5.7E-05 30.6 4.8 41 8-50 5-45 (56)
289 2dhy_A CUE domain-containing p 83.8 1.4 4.7E-05 32.4 4.4 43 8-50 16-58 (67)
290 1xcc_A 1-Cys peroxiredoxin; un 83.5 2.7 9.4E-05 37.1 7.3 34 212-246 127-164 (220)
291 3uma_A Hypothetical peroxiredo 82.3 2.5 8.4E-05 36.4 6.3 76 145-232 55-166 (184)
292 3sbc_A Peroxiredoxin TSA1; alp 81.9 2.7 9.2E-05 37.6 6.5 91 145-245 51-178 (216)
293 2oo9_A E3 ubiquitin-protein li 80.8 3.1 0.00011 28.1 4.9 38 10-49 4-41 (46)
294 3mng_A Peroxiredoxin-5, mitoch 80.1 4.4 0.00015 34.4 7.1 19 212-232 137-155 (173)
295 1tr8_A Conserved protein (MTH1 79.4 1.8 6.2E-05 34.3 4.0 34 11-45 66-99 (102)
296 1prx_A HORF6; peroxiredoxin, h 79.2 11 0.00037 33.2 9.6 91 147-247 32-168 (224)
297 2wfc_A Peroxiredoxin 5, PRDX5; 78.8 2.3 7.9E-05 35.7 4.8 44 145-191 30-76 (167)
298 3tue_A Tryparedoxin peroxidase 78.5 5.2 0.00018 35.8 7.3 96 145-250 55-189 (219)
299 3h93_A Thiol:disulfide interch 77.1 7.2 0.00025 32.8 7.5 42 204-249 144-185 (192)
300 1wju_A NEDD8 ultimate buster-1 72.8 5.9 0.0002 31.1 5.4 49 289-343 13-88 (100)
301 1r7h_A NRDH-redoxin; thioredox 72.1 11 0.00038 26.0 6.4 69 151-242 4-72 (75)
302 1aip_C EF-TS, elongation facto 71.5 3.6 0.00012 36.4 4.2 40 10-50 3-42 (196)
303 4ae4_A Ubiquitin-associated pr 71.1 5.9 0.0002 32.0 5.1 41 8-50 6-46 (118)
304 1ttn_A DC-UBP, dendritic cell- 70.1 5.6 0.00019 31.0 4.7 57 281-344 14-93 (106)
305 4dwf_A HLA-B-associated transc 69.7 11 0.00039 27.8 6.2 51 289-345 3-75 (90)
306 2lqo_A Putative glutaredoxin R 68.6 12 0.00041 28.5 6.2 71 155-247 11-83 (92)
307 2di0_A Activating signal coint 68.5 12 0.00041 27.7 5.8 44 8-51 11-54 (71)
308 3v6c_B Ubiquitin; structural g 68.2 11 0.00038 28.1 5.9 51 288-344 14-87 (91)
309 3c1r_A Glutaredoxin-1; oxidize 68.1 5.1 0.00017 31.6 4.1 79 129-227 8-93 (118)
310 3q6o_A Sulfhydryl oxidase 1; p 66.1 24 0.00083 30.7 8.6 68 143-229 154-221 (244)
311 1xb2_B EF-TS, elongation facto 66.1 4.7 0.00016 37.7 4.0 39 10-49 4-42 (291)
312 2qho_B E3 ubiquitin-protein li 66.1 14 0.00046 25.3 5.1 42 10-51 9-50 (53)
313 1oqy_A HHR23A, UV excision rep 65.1 3.2 0.00011 40.2 2.7 41 9-51 167-207 (368)
314 1h75_A Glutaredoxin-like prote 64.9 7.6 0.00026 27.6 4.2 66 150-238 3-68 (81)
315 1sji_A Calsequestrin 2, calseq 63.4 12 0.0004 34.9 6.3 43 206-248 299-346 (350)
316 1ego_A Glutaredoxin; electron 62.4 5.4 0.00019 28.5 3.0 75 150-245 3-81 (85)
317 2znm_A Thiol:disulfide interch 62.0 67 0.0023 26.6 10.7 42 202-249 140-181 (195)
318 1p3q_Q VPS9P, vacuolar protein 58.0 4.3 0.00015 28.4 1.6 44 6-49 8-51 (54)
319 2pwj_A Mitochondrial peroxired 56.1 9.1 0.00031 32.0 3.7 55 147-210 45-102 (171)
320 2cq9_A GLRX2 protein, glutared 55.1 29 0.00099 27.5 6.5 78 132-227 13-91 (130)
321 4eew_A Large proline-rich prot 55.1 27 0.00091 25.6 5.9 51 289-345 15-87 (88)
322 3us3_A Calsequestrin-1; calciu 54.8 36 0.0012 31.9 8.2 63 182-249 281-349 (367)
323 2in3_A Hypothetical protein; D 53.0 39 0.0013 28.6 7.4 47 202-250 166-212 (216)
324 1kte_A Thioltransferase; redox 52.4 34 0.0012 25.4 6.2 62 150-227 14-79 (105)
325 2r2j_A Thioredoxin domain-cont 52.0 48 0.0017 31.1 8.6 61 181-249 268-330 (382)
326 2hze_A Glutaredoxin-1; thiored 51.6 24 0.00082 27.1 5.3 69 137-227 10-86 (114)
327 3rhb_A ATGRXC5, glutaredoxin-C 51.0 28 0.00097 26.5 5.7 76 133-227 6-84 (113)
328 3ic4_A Glutaredoxin (GRX-1); s 50.8 51 0.0017 23.7 6.8 69 153-243 17-90 (92)
329 2yan_A Glutaredoxin-3; oxidore 50.0 36 0.0012 25.6 6.1 68 140-227 11-83 (105)
330 3gv1_A Disulfide interchange p 49.6 14 0.00049 30.4 3.9 47 199-251 96-142 (147)
331 1wyw_B Ubiquitin-like protein 49.2 28 0.00097 26.3 5.3 50 287-342 17-88 (97)
332 3phx_B Ubiquitin-like protein 48.6 39 0.0014 24.0 5.8 48 291-344 4-74 (79)
333 4dbg_B Ring finger protein 31; 48.4 12 0.0004 31.9 3.1 38 8-46 100-137 (162)
334 2h8l_A Protein disulfide-isome 48.1 37 0.0013 29.9 6.7 57 183-249 169-231 (252)
335 1ndd_A NEDD8, protein (ubiquit 47.9 32 0.0011 23.9 5.1 22 321-344 48-70 (76)
336 3a9j_A Ubiquitin; protein comp 47.3 33 0.0011 23.8 5.1 22 321-344 48-70 (76)
337 2klx_A Glutaredoxin; thioredox 43.9 27 0.00091 25.2 4.3 50 150-217 8-60 (89)
338 4f82_A Thioredoxin reductase; 43.6 34 0.0012 29.2 5.4 42 146-191 47-92 (176)
339 1fov_A Glutaredoxin 3, GRX3; a 43.6 36 0.0012 23.7 4.9 72 152-253 5-78 (82)
340 1v2y_A 3300001G02RIK protein; 43.5 34 0.0012 26.8 5.0 31 309-344 62-93 (105)
341 2ht9_A Glutaredoxin-2; thiored 42.9 40 0.0014 27.5 5.6 70 134-217 37-107 (146)
342 1wik_A Thioredoxin-like protei 42.9 57 0.002 24.7 6.2 58 144-217 13-75 (109)
343 2dzi_A Ubiquitin-like protein 42.8 33 0.0011 24.4 4.5 49 289-343 5-76 (81)
344 1wh3_A 59 kDa 2'-5'-oligoadeny 42.6 47 0.0016 24.0 5.5 50 289-344 5-77 (87)
345 2kc2_A Talin-1, F1; FERM, adhe 39.7 60 0.0021 26.5 6.0 20 326-345 101-121 (128)
346 3kzq_A Putative uncharacterize 39.5 62 0.0021 27.4 6.5 46 202-249 159-204 (208)
347 2lbc_A Ubiquitin carboxyl-term 38.7 30 0.001 27.8 4.0 40 11-52 4-44 (126)
348 3q8g_A CRAL-TRIO domain-contai 38.3 38 0.0013 31.5 5.3 42 8-49 37-84 (320)
349 2khp_A Glutaredoxin; thioredox 37.6 38 0.0013 24.5 4.2 52 150-216 8-60 (92)
350 2al3_A TUG long isoform; TUG U 37.1 26 0.00088 27.0 3.2 43 293-341 11-75 (90)
351 1yx5_B Ubiquitin; proteasome, 36.5 46 0.0016 24.9 4.6 21 321-343 48-69 (98)
352 3mtn_B UBA80, ubcep1, ubiquiti 35.8 59 0.002 23.1 5.0 48 291-344 3-73 (85)
353 3msz_A Glutaredoxin 1; alpha-b 34.6 49 0.0017 23.3 4.4 54 150-218 6-67 (89)
354 2uyz_B Small ubiquitin-related 33.8 77 0.0026 22.4 5.3 20 321-342 51-70 (79)
355 3dbh_I NEDD8; cell cycle, acti 33.7 63 0.0021 23.2 4.9 16 289-304 10-25 (88)
356 2cos_A Serine/threonine protei 32.4 37 0.0013 23.7 3.0 38 8-47 7-45 (54)
357 1aua_A Phosphatidylinositol tr 32.2 55 0.0019 29.6 5.2 42 8-49 28-75 (296)
358 1olm_A SEC14-like protein 2; l 31.9 66 0.0023 30.5 6.0 42 8-49 10-58 (403)
359 4hcn_B Polyubiquitin, ubiquiti 31.6 62 0.0021 24.3 4.7 50 289-344 20-92 (98)
360 2j9u_A VPS28, vacuolar protein 31.5 26 0.00089 27.3 2.4 24 22-49 70-93 (96)
361 2j9w_A VPS28, VPS28-PROV prote 31.5 26 0.00088 27.6 2.4 25 21-49 74-98 (102)
362 3ctg_A Glutaredoxin-2; reduced 31.4 45 0.0016 26.5 4.0 69 135-220 26-101 (129)
363 2p9m_A Hypothetical protein MJ 30.6 1.1E+02 0.0037 23.3 6.1 104 129-245 21-136 (138)
364 3k9o_B Ubiquitin, UBB+1; E2-25 30.4 74 0.0025 23.4 4.9 22 321-344 49-71 (96)
365 2hj8_A Interferon-induced 17 k 29.8 87 0.003 22.9 5.1 48 291-344 4-74 (88)
366 1q02_A Sequestosome 1; helical 28.5 37 0.0013 23.4 2.4 36 10-47 10-47 (52)
367 3feu_A Putative lipoprotein; a 28.5 75 0.0026 26.6 5.1 44 201-248 141-184 (185)
368 2ojr_A Ubiquitin; lanthide-bin 28.0 90 0.0031 24.0 5.1 50 289-344 33-105 (111)
369 3h8q_A Thioredoxin reductase 3 27.9 62 0.0021 24.8 4.1 90 136-248 7-101 (114)
370 1xiy_A Peroxiredoxin, pfaop; a 27.2 77 0.0026 26.9 5.0 44 145-191 42-89 (182)
371 3n3k_B Ubiquitin; hydrolase, p 27.1 59 0.002 23.2 3.7 22 321-344 51-73 (85)
372 3plu_A Ubiquitin-like modifier 26.8 92 0.0032 23.9 4.8 48 289-342 19-88 (93)
373 1wia_A Hypothetical ubiquitin- 26.4 1.3E+02 0.0043 22.2 5.6 49 290-343 6-73 (95)
374 3t58_A Sulfhydryl oxidase 1; o 26.2 1.3E+02 0.0046 29.8 7.3 86 142-250 153-238 (519)
375 2wem_A Glutaredoxin-related pr 26.1 75 0.0026 24.9 4.4 69 133-218 7-82 (118)
376 4fbj_B NEDD8; effector-HOST ta 25.5 82 0.0028 23.1 4.3 22 321-344 48-70 (88)
377 1wx7_A Ubiquilin 3; ubiquitin- 24.6 1.7E+02 0.0057 22.1 6.1 49 288-342 14-83 (106)
378 2bwf_A Ubiquitin-like protein 23.6 96 0.0033 21.5 4.2 22 321-344 51-73 (77)
379 3f4s_A Alpha-DSBA1, putative u 23.0 1.1E+02 0.0039 26.6 5.4 48 202-250 160-213 (226)
380 3gx8_A Monothiol glutaredoxin- 22.8 1.2E+02 0.0043 23.6 5.1 63 137-218 7-80 (121)
381 4gqw_A CBS domain-containing p 22.8 1.4E+02 0.0048 22.8 5.5 62 171-247 84-145 (152)
382 3vdz_A Ubiquitin-40S ribosomal 22.4 1.2E+02 0.0041 23.4 4.9 49 290-344 34-105 (111)
383 3ihp_A Ubiquitin carboxyl-term 22.4 81 0.0028 33.6 5.0 40 10-51 720-759 (854)
384 2wci_A Glutaredoxin-4; redox-a 22.1 1.2E+02 0.004 24.5 4.9 69 134-218 23-96 (135)
385 1sif_A Ubiquitin; hydrophobic 21.1 1.2E+02 0.0042 22.0 4.5 21 321-343 57-78 (88)
386 3fhk_A UPF0403 protein YPHP; d 21.0 48 0.0016 27.7 2.2 50 198-250 89-146 (147)
387 2daj_A KIAA0977 protein, COBL- 20.9 2.4E+02 0.0083 21.5 6.0 48 288-338 7-76 (91)
388 3kxr_A Magnesium transporter, 20.7 1.1E+02 0.0039 25.9 4.8 100 132-247 70-176 (205)
389 3ipz_A Monothiol glutaredoxin- 20.3 1.9E+02 0.0066 21.8 5.7 66 135-218 7-79 (109)
390 3rt3_B Ubiquitin-like protein 20.1 1.9E+02 0.0065 23.2 5.9 49 290-344 80-151 (159)
391 3sl7_A CBS domain-containing p 20.0 2E+02 0.007 22.7 6.1 66 171-251 97-162 (180)
No 1
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.97 E-value=1.1e-30 Score=227.14 Aligned_cols=134 Identities=43% Similarity=0.852 Sum_probs=127.3
Q ss_pred CcchhhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeec
Q 036413 111 DNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYD 190 (346)
Q Consensus 111 ~~~~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~ 190 (346)
.+.++.++|+.+|+||+.++|.++|++|++.||+++|||||||+++||+.|++|+|+||+|+.|+++|+ +|||+|++++
T Consensus 7 ~~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~ 85 (153)
T 2dlx_A 7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYH 85 (153)
T ss_dssp CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEES
T ss_pred CCCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEec
Confidence 445667899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 191 DDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 191 ~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
+ ++++..+++.|++..+|+++||||.||+.+.+|.| +++++|++.|.++++.+..
T Consensus 86 ~------~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~ 140 (153)
T 2dlx_A 86 D------SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQ 140 (153)
T ss_dssp S------SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCS
T ss_pred C------CHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCC
Confidence 9 99999999999999999999999988998988877 8999999999999998863
No 2
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=230.19 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=125.7
Q ss_pred CcchhhHHHHhhcCCCcccccccCHHHHHHHh----hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEE
Q 036413 111 DNKNNNNNLASLYRPPVDLMFNGSFEKAKDVG----SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFW 186 (346)
Q Consensus 111 ~~~~~~~~l~~lf~PP~~l~~~gsf~~A~~~A----k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw 186 (346)
.+..|++.|++.|+++|+.||.|+|++|++.| |+++||||||||+++|++|+.|||+||||+.|+++|+ +|||+|
T Consensus 16 ~~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w 94 (178)
T 2ec4_A 16 ALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS-QNFITW 94 (178)
T ss_dssp HHHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH-cCEEEE
Confidence 34679999999999999999999999999999 9999999999999999999999999999999999999 999999
Q ss_pred EeecCCCCCCCChH-------------HHHHHhh---cCCCCCceEEEEeCCC--CceEEEEeCCCChHHHHHHHHHHHH
Q 036413 187 QVYDDDDDDDDDSE-------------CRKVCGY---YKLDSLPVVLVIDPIT--GEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 187 ~~~~~~~~~~~~~e-------------g~~~~~~---y~~~~~P~i~iidp~t--ge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
++|++ ++| |.+++.. |+++.||+++||+|+. ++.+.+++|.+++++|++.|.++++
T Consensus 95 ~~dv~------~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e 168 (178)
T 2ec4_A 95 AWDLT------KDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAME 168 (178)
T ss_dssp EEECC------SHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred EEeCC------CchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 99999 898 5667765 8999999999999863 3567889999999999999999999
Q ss_pred cCCccc
Q 036413 249 SGPRDQ 254 (346)
Q Consensus 249 ~~~~~~ 254 (346)
.+..++
T Consensus 169 ~~~~~l 174 (178)
T 2ec4_A 169 IFTAQQ 174 (178)
T ss_dssp HHHHHS
T ss_pred HhhHhh
Confidence 886543
No 3
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.41 E-value=5.1e-13 Score=109.40 Aligned_cols=67 Identities=22% Similarity=0.483 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCccCCcccchhh
Q 036413 275 AYPAVPEEPLQVARNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQE 333 (346)
Q Consensus 275 ~~~~~~~EP~~~~~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~~~~d~Tiee 333 (346)
+...+|+||.+ +..++|+||||||||+|+ ..++.|+|++.||+ +.+..+.++||+|
T Consensus 8 ~~~~lp~EP~~-~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~~~~~f~L~t~fPr--k~l~~d~~~TL~e 84 (109)
T 2cr5_A 8 EVPDLPEEPSE-TAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPR--RALEVEGGSSLED 84 (109)
T ss_dssp CCCCCCCCCCS-SCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTCCTTTEEEECSSSC--CBCCCCSSCBHHH
T ss_pred ccccCCCCCCC-CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeCCCC--cCCCCCCCCCHHH
Confidence 45679999988 557899999999999987 12578999999995 6676688999999
Q ss_pred cCCCceeEEEE
Q 036413 334 SGLNNSVILVT 344 (346)
Q Consensus 334 agL~n~~vl~~ 344 (346)
+||.|+.+|++
T Consensus 85 ~gL~p~a~L~V 95 (109)
T 2cr5_A 85 IGITVDTVLNV 95 (109)
T ss_dssp HTCSSCEEEEE
T ss_pred cCCCCCeEEEE
Confidence 99999888775
No 4
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.32 E-value=7.8e-13 Score=114.20 Aligned_cols=117 Identities=14% Similarity=0.209 Sum_probs=99.4
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh----------
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS---------- 199 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~---------- 199 (346)
....+|++++..|+.++|++||++..+||..|+.|.+.+|.++.+.++++ ++|++..++.++ ..+..
T Consensus 31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~-~~~~~v~v~~d~--~~~~~~~~~~~~~~~ 107 (172)
T 3f9u_A 31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN-NDYVLITLYVDN--KTPLTEPVKIMENGT 107 (172)
T ss_dssp CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEETTC--CCEEEEEEEEEETTE
T ss_pred cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CCEEEEEEecCc--ccccchhhhhhhcch
Confidence 34668999999999999999999999999999999999999999999999 899999999882 11000
Q ss_pred ----------HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCC-hHHHHHHHHHHHHcC
Q 036413 200 ----------ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVD-PVSLLEDLLSFMESG 250 (346)
Q Consensus 200 ----------eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~-~~~~i~~L~~fl~~~ 250 (346)
.+.-.+..|++..+|++.|||+ .|+.+....|..+ +++|++.|.+.++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~~~G~~~~~~~l~~~l~~~l~~~ 168 (172)
T 3f9u_A 108 ERTLRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNKSYAYDEDISKYINFLQTGLENY 168 (172)
T ss_dssp EEEEEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence 0111168899999999999997 6998888889887 999999999988764
No 5
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.30 E-value=2.3e-12 Score=89.27 Aligned_cols=43 Identities=23% Similarity=0.570 Sum_probs=40.1
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
++++++|.+|++| ||++++.|++||++++|||+.||+.||+.+
T Consensus 3 ~~~~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 3 EERQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp THHHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 4678899999999 788999999999999999999999999865
No 6
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=90.34 Aligned_cols=43 Identities=23% Similarity=0.382 Sum_probs=36.6
Q ss_pred hhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 7 KKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 7 ~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
+.+++++|++|++||+..+.++|++||++|||||+.||+.||.
T Consensus 2 ~~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 2 SMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp -CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 3579999999999955566799999999999999999999985
No 7
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=2.3e-11 Score=99.46 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=100.2
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
...+|++++..|+.++|++||++.++||..|+.+...++.++.+.++++ .+|+++.++.+ ..+...++..|++
T Consensus 12 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~------~~~~~~~~~~~~v 84 (130)
T 2kuc_A 12 RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDME------KGEGVELRKKYGV 84 (130)
T ss_dssp BCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSS------STTHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecC------CcchHHHHHHcCC
Confidence 4688999999999999999999999999999999998888899999999 99999999888 6667889999999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
..+|++.++|+ .|+.+..+.|..+.++|.+.|.+.+..
T Consensus 85 ~~~Pt~~~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 85 HAYPTLLFINS-SGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp CSSCEEEEECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 99999999996 699998999998998888888877643
No 8
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=91.18 Aligned_cols=45 Identities=29% Similarity=0.418 Sum_probs=41.8
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
..++++|.+||+| ||+++++|++||++++||||.||++||+.++.
T Consensus 13 ~~~~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 13 SALKGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 6788999999999 89999999999999999999999999997643
No 9
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.87 E-value=9.3e-13 Score=108.09 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=99.5
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV 215 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~ 215 (346)
.+++..|+.++|++||++.++||..|+.+...++.++.+.+.++ .+|+++.++.+ ..+...++..|++..+|+
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~------~~~~~~~~~~~~v~~~Pt 81 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE-ARFVVASVSVD------TPEGQELARRYRVPGTPT 81 (130)
Confidence 88999999999999999999999999999999999999999999 89999999988 677888999999999999
Q ss_pred EEEEeCCCCce--EEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 216 VLVIDPITGEK--MRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 216 i~iidp~tge~--l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
+.++||..|+. +..+.|..++++|.+.|.+.+....
T Consensus 82 ~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~ 119 (130)
T 2lst_A 82 FVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG 119 (130)
Confidence 99999888888 8888998888888888888876554
No 10
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.19 E-value=7.5e-11 Score=100.59 Aligned_cols=108 Identities=12% Similarity=0.186 Sum_probs=97.5
Q ss_pred cCHHHHHHHhhhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC--------hHHHH
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD--------SECRK 203 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~--------~eg~~ 203 (346)
.++.+++..|+.++|++||++. ++||..|+.+...++.++.+.++.+ .+|++..++.+. . .....
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~-----~~~~~~~~~~~~~~ 107 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQ-----KNHQPEEQRQKNQE 107 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCS-----SCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcc-----ccCCChhhHhhHHH
Confidence 7899999999999999999999 8999999999999999999999998 899999999882 2 34668
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHHHHH
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLSFME 248 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~fl~ 248 (346)
++..|++..+|++.|||+ .|+.+..+ |.. ++++|++.|.+.+.
T Consensus 108 l~~~~~v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 108 LKAQYKVTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp HHHHTTCCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 899999999999999996 69999988 988 89999999888764
No 11
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=91.45 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=41.4
Q ss_pred hhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 7 KKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 7 ~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
+.+++++|.+|++||+++++++|++||+++|||||.||+.||+...
T Consensus 15 s~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred ChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3678999999999954499999999999999999999999999754
No 12
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.15 E-value=1.8e-11 Score=105.63 Aligned_cols=120 Identities=15% Similarity=0.173 Sum_probs=97.5
Q ss_pred HHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC
Q 036413 119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD 198 (346)
Q Consensus 119 l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~ 198 (346)
++..|+. .+-...+|++|++.|++++|++||++..+||..|+.|...++.++.|.++++ .+||...++.+ .
T Consensus 19 ~~~~~~~--~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-~~fv~V~vD~e------~ 89 (151)
T 3ph9_A 19 LSRGWGD--DITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-NKFIMLNLMHE------T 89 (151)
T ss_dssp SSTTSCT--TSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-HTCEEEEESSC------C
T ss_pred ccccccC--CCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-cCeEEEEecCC------c
Confidence 4444544 3335679999999999999999999999999999999999999999999999 89999888643 2
Q ss_pred hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCC-------C---ChHHHHHHHHHHHHcCC
Q 036413 199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM-------V---DPVSLLEDLLSFMESGP 251 (346)
Q Consensus 199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~-------~---~~~~~i~~L~~fl~~~~ 251 (346)
.+ .+..|++..+|++++++| .|+.+..+.|. . +.+.+++.+.+.+.++.
T Consensus 90 ~~---~~~~~~v~~~PT~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~ 148 (151)
T 3ph9_A 90 TD---KNLSPDGQYVPRIMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQ 148 (151)
T ss_dssp SC---GGGCTTCCCSSEEEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred hh---hHhhcCCCCCCEEEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence 22 356788899999999997 59988888887 3 34668888888877654
No 13
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.14 E-value=3.4e-11 Score=101.14 Aligned_cols=59 Identities=31% Similarity=0.390 Sum_probs=49.2
Q ss_pred CCCCCCCeeEEEEEcCCCccc---------------------c--CCcceEEecCCCCCCCCccCCcccchhhcCCCcee
Q 036413 284 LQVARNLVCRIGVRLPDGQEA---------------------N--QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSV 340 (346)
Q Consensus 284 ~~~~~~~~trIqiRlpdG~ri---------------------~--~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~ 340 (346)
..++..++|+||||||||+|+ . ..+.|+|++.||+ +.+ .+.++||+|+||.|++
T Consensus 45 ~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPr--k~l-~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 45 LINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPN--KEL-ADENQTLKEANLLNAV 121 (127)
T ss_dssp CCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTT--EEC-CSTTCBHHHHTCSSCE
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCC--CCC-CCCCCcHHHCCCcCce
Confidence 344567899999999999997 1 1478999999995 445 4678999999999999
Q ss_pred EEEEe
Q 036413 341 ILVTL 345 (346)
Q Consensus 341 vl~~~ 345 (346)
|+++|
T Consensus 122 vl~k~ 126 (127)
T 1s3s_G 122 IVQRL 126 (127)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 14
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=99.06 E-value=1.8e-10 Score=101.50 Aligned_cols=108 Identities=16% Similarity=0.247 Sum_probs=84.7
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc--
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY-- 208 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y-- 208 (346)
..-.+++|++.|++++|.|||++..+||..|++|.+.+|.++.|.++++ ++||+..+|.++ .++ +...|
T Consensus 24 W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~-~~fv~ikVD~de-----~~~---l~~~y~~ 94 (173)
T 3ira_A 24 WYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN-EAFVSIKVDREE-----RPD---IDNIYMT 94 (173)
T ss_dssp CBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH-HHCEEEEEETTT-----CHH---HHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH-hcCceeeeCCcc-----cCc---HHHHHHH
Confidence 3455699999999999999999999999999999999999999999999 999999998883 333 33334
Q ss_pred ------CCCCCceEEEEeCCCCceEEEEe-----CCCChHHHHHHHHHHHH
Q 036413 209 ------KLDSLPVVLVIDPITGEKMRKWC-----GMVDPVSLLEDLLSFME 248 (346)
Q Consensus 209 ------~~~~~P~i~iidp~tge~l~~~~-----G~~~~~~~i~~L~~fl~ 248 (346)
++..+|++++++| .|+.+.... |..+...|++.|....+
T Consensus 95 ~~q~~~gv~g~Pt~v~l~~-dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~ 144 (173)
T 3ira_A 95 VCQIILGRGGWPLNIIMTP-GKKPFFAGTYIPKNTRFNQIGMLELVPRIKE 144 (173)
T ss_dssp HHHHHHSCCCSSEEEEECT-TSCEEEEESSCCSSCBTTBCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCcceeeECC-CCCceeeeeeCCCCcCCCCCCHHHHHHHHHH
Confidence 8999999999998 588776531 12233445555554443
No 15
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=86.51 Aligned_cols=42 Identities=26% Similarity=0.551 Sum_probs=38.8
Q ss_pred HH-HHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 10 RK-RVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 10 ~~-~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
++ ++|.+|++| ||+++++|++||++++||||.||+.||+..+
T Consensus 16 ~~q~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 16 RHQVMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 45 799999999 8999999999999999999999999998654
No 16
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.05 E-value=3.1e-10 Score=92.77 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=44.5
Q ss_pred CCCCeeEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccC-CcccchhhcCCCcee-EE
Q 036413 287 ARNLVCRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLNNSV-IL 342 (346)
Q Consensus 287 ~~~~~trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~n~~-vl 342 (346)
+.+++|+||||||||+|+ . ..+.|+|++.||+ +.+.. +.++||+|+||.++. |+
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPr--k~l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPR--REFTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSC--CBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCC--cCCcccccCCCHHHCCCCCceEEE
Confidence 456799999999999998 1 2379999999995 44543 678999999999855 44
Q ss_pred EEe
Q 036413 343 VTL 345 (346)
Q Consensus 343 ~~~ 345 (346)
|+|
T Consensus 87 v~~ 89 (109)
T 2dzk_A 87 LLP 89 (109)
T ss_dssp EEC
T ss_pred EEE
Confidence 545
No 17
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.04 E-value=3.4e-10 Score=88.06 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=45.5
Q ss_pred CCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCc-cCCcccchhhcCCCceeEEEE
Q 036413 288 RNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPL-DYNSKMTFQESGLNNSVILVT 344 (346)
Q Consensus 288 ~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l-~~~~d~TieeagL~n~~vl~~ 344 (346)
..++|+||||||||+|+ ..+..|.|++.||+ +.+ ..+.++||+|+||.++.+|++
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~~~~~~f~L~t~fPr--k~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPR--RDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTTCCTTTEEEECSSSC--CBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCC--CCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 35799999999999987 13589999999996 556 457889999999998877764
No 18
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.00 E-value=6.3e-10 Score=91.47 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=88.7
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC--
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL-- 210 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~-- 210 (346)
-+|++++..|+.++|.+||++.++||..|+.+.. +|.++.+.+.++ .++.+..++.+. ..+...++..|++
T Consensus 16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~-~~~~~~~vd~~~-----~~~~~~l~~~~~v~~ 88 (133)
T 3fk8_A 16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIA-KHFEVVKIDVGN-----FDRNLELSQAYGDPI 88 (133)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHH-HHCEEEEEECTT-----TTSSHHHHHHTTCGG
T ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhc-CCEEEEEEeCCc-----ccchHHHHHHhCCcc
Confidence 4689999999999999999999999999999976 688889999998 899999999852 2345679999999
Q ss_pred -CCCceEEEEeCCCCceEEEEeC-------CCChHHHHHHHHH
Q 036413 211 -DSLPVVLVIDPITGEKMRKWCG-------MVDPVSLLEDLLS 245 (346)
Q Consensus 211 -~~~P~i~iidp~tge~l~~~~G-------~~~~~~~i~~L~~ 245 (346)
..+|++.++|+ .|+.+....| ..+.+++.+.|..
T Consensus 89 ~~~~Pt~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~ 130 (133)
T 3fk8_A 89 QDGIPAVVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAK 130 (133)
T ss_dssp GGCSSEEEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred CCccceEEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHH
Confidence 99999999996 6999988888 5666655555544
No 19
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=98.97 E-value=1.6e-09 Score=89.74 Aligned_cols=113 Identities=14% Similarity=0.208 Sum_probs=90.7
Q ss_pred CCCcc-cccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH
Q 036413 124 RPPVD-LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR 202 (346)
Q Consensus 124 ~PP~~-l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~ 202 (346)
.|+|. +--..+|..++..++ +|++||++.++||..|+.+...++.++.+.+.++ + +.+..++.+. ...+..
T Consensus 10 ~~~f~~~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~-~~~~~vd~~~----~~~~~~ 81 (134)
T 2fwh_A 10 HLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-D-TVLLQANVTA----NDAQDV 81 (134)
T ss_dssp CCCCEECCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-T-SEEEEEECTT----CCHHHH
T ss_pred CCCcEEecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-C-cEEEEEeCCC----CcchHH
Confidence 35554 333456777776554 8999999999999999999999999999998888 4 9999998871 125678
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceE--EEEeCCCChHHHHHHHHH
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~ 245 (346)
.++..|++..+|++.++|+ .|+.+ .++.|..++++|.+.|..
T Consensus 82 ~l~~~~~v~~~Pt~~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~ 125 (134)
T 2fwh_A 82 ALLKHLNVLGLPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRD 125 (134)
T ss_dssp HHHHHTTCCSSSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEECC-CCCEeeeeeeeeccCHHHHHHHHHh
Confidence 8999999999999999996 68887 678899998877666654
No 20
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=98.88 E-value=3.4e-09 Score=88.57 Aligned_cols=56 Identities=25% Similarity=0.452 Sum_probs=44.6
Q ss_pred CCCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCc-eeEEE
Q 036413 287 ARNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNN-SVILV 343 (346)
Q Consensus 287 ~~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n-~~vl~ 343 (346)
+.+++|+||||||||+|+ .....|+|++.||+ +.+. .+.++||+|+||.+ ++|+|
T Consensus 39 ~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~~~~~~~F~L~t~fPr--k~l~~~d~~~TL~e~gL~psa~Liv 116 (124)
T 1wj4_A 39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPR--RKLSHLDYDITLQEAGLCPQETVFV 116 (124)
T ss_dssp CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHCCTTTEEEECSSSC--CEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEecCCCC--cCCccCCCCCCHHHCCCCCceEEEE
Confidence 567899999999999997 12478999999995 5564 47889999999997 44444
Q ss_pred E
Q 036413 344 T 344 (346)
Q Consensus 344 ~ 344 (346)
+
T Consensus 117 ~ 117 (124)
T 1wj4_A 117 Q 117 (124)
T ss_dssp E
T ss_pred E
Confidence 3
No 21
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=98.66 E-value=8.7e-08 Score=77.75 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=80.5
Q ss_pred HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
.+..++|.+||++.++||..|+.+...+ ..+.+-++ .++.|+.++.+ ..+...++..|++..+|++.+++
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~-~~v~~~~v~~~------~d~~~~~~~~~~v~~~Pt~~~~~ 90 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKERE-GKFNIYYARLE------EEKNIDLAYKYDANIVPTTVFLD 90 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSS-SSCEEEEEETT------SSHHHHHHHHTTCCSSSEEEEEC
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhc-CCeEEEEEeCC------CCchHHHHHHcCCcceeEEEEEC
Confidence 4567889999999999999999997544 45566666 78999999954 34556789999999999999999
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 221 PITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 221 p~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+ .|+.+..+.|..+.++|.+.|.+.+...
T Consensus 91 ~-~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 119 (126)
T 2l57_A 91 K-EGNKFYVHQGLMRKNNIETILNSLGVKE 119 (126)
T ss_dssp T-TCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred C-CCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence 7 6999989999989888877777665443
No 22
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=98.64 E-value=9.8e-08 Score=75.30 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=81.1
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++++..|++.+|.++|++.++||..|+.+...+ ..+.+-.. .++.|..++.+ . ...++..|++.
T Consensus 10 ~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~------~--~~~~~~~~~v~ 77 (112)
T 1ep7_A 10 KAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYA-GKVIFLKVDVD------A--VAAVAEAAGIT 77 (112)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--THHHHHHHTCC
T ss_pred HHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CCeEEEEEECC------c--hHHHHHHcCCC
Confidence 4568899988888899999999999999999996443 33444455 58999999887 3 35688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.+|++.++. .|+.+..+.|. +++++.+.|.+.+
T Consensus 78 ~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 78 AMPTFHVYK--DGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp BSSEEEEEE--TTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred cccEEEEEE--CCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 999987773 69988889998 8888877777665
No 23
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.59 E-value=2.8e-07 Score=74.87 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=86.3
Q ss_pred hhcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC
Q 036413 121 SLYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD 198 (346)
Q Consensus 121 ~lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~ 198 (346)
.+|.++..+ +-..+|++.. .+.+|.+||++.++||..|+.+...+ +.+.+-++ .++.|..++.+ .
T Consensus 11 ~l~~~~~~v~~l~~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~-~~~~~~~vd~~------~ 77 (130)
T 2dml_A 11 GLYSSSDDVIELTPSNFNREV---IQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALK-DVVKVGAVNAD------K 77 (130)
T ss_dssp CSSCTTSSSEECCTTTHHHHT---TTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTT-TTSEEEEEETT------T
T ss_pred cccCCCCCcEECCHHHHHHHH---hcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhc-CceEEEEEeCC------C
Confidence 344443333 3345566544 35689999999999999999996554 55666666 67888888877 3
Q ss_pred hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
...++..|++..+|++.++++ .|+.+..+.|..+.++|++.|.+.+...+
T Consensus 78 --~~~l~~~~~v~~~Pt~~~~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~~ 127 (130)
T 2dml_A 78 --HQSLGGQYGVQGFPTIKIFGA-NKNKPEDYQGGRTGEAIVDAALSALRSGP 127 (130)
T ss_dssp --CHHHHHHHTCCSSSEEEEESS-CTTSCEECCSCCSHHHHHHHHHHHHHHSS
T ss_pred --CHHHHHHcCCCccCEEEEEeC-CCCeEEEeecCCCHHHHHHHHHHHHhcCC
Confidence 246889999999999999996 35557778898999999999998887654
No 24
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=98.55 E-value=3.2e-07 Score=73.56 Aligned_cols=94 Identities=21% Similarity=0.381 Sum_probs=70.5
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.-+|++++..+ .+|+++|+++++||.+|+.|..-+ +.+.+.. .+++|..++++ . ...++..|++.
T Consensus 8 ~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~---~~~~~~~--~~~~~~~vd~d------~--~~~l~~~~~V~ 72 (105)
T 3zzx_A 8 QEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKL---EELSQSM--SDVVFLKVDVD------E--CEDIAQDNQIA 72 (105)
T ss_dssp HHHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHC--TTEEEEEEETT------T--CHHHHHHTTCC
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCCCCccCCCcch---hhhhhcc--CCeEEEEEecc------c--CHHHHHHcCCC
Confidence 34678887665 479999999999999999995332 2233333 36889988887 2 35689999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
++|++.++. .|+.+..+.|. ++++|.+.|
T Consensus 73 ~~PT~~~~~--~G~~v~~~~G~-~~~~l~~~i 101 (105)
T 3zzx_A 73 CMPTFLFMK--NGQKLDSLSGA-NYDKLLELV 101 (105)
T ss_dssp BSSEEEEEE--TTEEEEEEESC-CHHHHHHHH
T ss_pred eecEEEEEE--CCEEEEEEeCc-CHHHHHHHH
Confidence 999998884 69999999994 666554444
No 25
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=98.54 E-value=2.3e-07 Score=74.71 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=77.9
Q ss_pred CcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHH
Q 036413 126 PVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKV 204 (346)
Q Consensus 126 P~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~ 204 (346)
.....-.-+|++++..+ .+|++||++.++||..|+.+. +.+.++.++ .++.|..++.+ . ...+
T Consensus 13 ~~~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~~v~~~~vd~d------~--~~~l 76 (116)
T 3qfa_C 13 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIK------PFFHSLSEKYSNVIFLEVDVD------D--CQDV 76 (116)
T ss_dssp CBCCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHH------HHHHHHHTTCTTSEEEEEETT------T--THHH
T ss_pred ccCCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHH------HHHHHHHHHCCCCEEEEEECC------C--CHHH
Confidence 33444566788877554 689999999999999999985 344444440 13788888877 2 3578
Q ss_pred HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 205 ~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+..|++..+|++.++ ..|+.+..+.|. ++++|.+.|.+.
T Consensus 77 ~~~~~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 77 ASECEVKSMPTFQFF--KKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp HHHTTCCSSSEEEEE--SSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred HHHcCCccccEEEEE--eCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 999999999999998 369999999998 888887777654
No 26
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=98.53 E-value=2.1e-07 Score=73.92 Aligned_cols=101 Identities=19% Similarity=0.340 Sum_probs=82.1
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
-..+|++++..|+..+|+++|++.++||..|+.+. +.+.++.+ + ++.|..++.+ . ...++..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~-~~~~~~~~~v~~~------~--~~~~~~~~ 77 (118)
T 2vm1_A 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIA------PVFAEYAK-KFPGAIFLKVDVD------E--LKDVAEAY 77 (118)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHH------HHHHHHHH-HCTTSEEEEEETT------T--SHHHHHHT
T ss_pred CHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHh------HHHHHHHH-HCCCcEEEEEEcc------c--CHHHHHHc
Confidence 45689999999999999999999999999999985 34455554 3 6888888777 3 35688999
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
++..+|++.++. .|+.+..+.| .+++++.+.|.+++..
T Consensus 78 ~v~~~Pt~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 78 NVEAMPTFLFIK--DGEKVDSVVG-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp TCCSBSEEEEEE--TTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred CCCcCcEEEEEe--CCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence 999999998883 6998888899 5888888888887754
No 27
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=98.53 E-value=2.7e-07 Score=75.39 Aligned_cols=98 Identities=11% Similarity=0.239 Sum_probs=79.1
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
-..+|++++..|+..+|+++|++.++||..|+.+.. .+.++.+ + ++.|..++.+ . ...++..|
T Consensus 23 ~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~-~~~~v~~~~vd~d------~--~~~l~~~~ 87 (124)
T 1xfl_A 23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAP------FFADLAK-KLPNVLFLKVDTD------E--LKSVASDW 87 (124)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHH------HHHHHHH-HCSSEEEEEEETT------T--SHHHHHHT
T ss_pred CHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHH-HCCCcEEEEEECc------c--CHHHHHHc
Confidence 456799999999999999999999999999999953 3445444 2 6899998887 2 25688999
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
++..+|++.|+ ..|+.+..+.| .+++++.+.|.++
T Consensus 88 ~v~~~Pt~~~~--~~G~~~~~~~G-~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 88 AIQAMPTFMFL--KEGKILDKVVG-AKKDELQSTIAKH 122 (124)
T ss_dssp TCCSSSEEEEE--ETTEEEEEEES-CCHHHHHHHHHHH
T ss_pred CCCccCEEEEE--ECCEEEEEEeC-CCHHHHHHHHHHh
Confidence 99999998887 36999988999 4887777777654
No 28
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.53 E-value=4.5e-07 Score=70.64 Aligned_cols=99 Identities=18% Similarity=0.317 Sum_probs=77.9
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++. ++|+++|++.++||..|+.+...+ ..+.+-.. .++.|..++.+ . ...++..|++
T Consensus 10 ~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~i 73 (109)
T 3tco_A 10 TEENFDEVIR----NNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYK-GKAVFGRLNVD------E--NQKIADKYSV 73 (109)
T ss_dssp CTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--CHHHHHHTTC
T ss_pred cHHHHHHHHh----cCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhC-CCceEEEEccc------c--CHHHHHhcCc
Confidence 4566777764 489999999999999999996322 33444445 67888888877 2 2468899999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
..+|++.++ ..|+.+....|..+.++|.+.|.+.+
T Consensus 74 ~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 74 LNIPTTLIF--VNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp CSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred ccCCEEEEE--cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 999999999 36999999999999988888887764
No 29
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=98.51 E-value=8.5e-08 Score=79.11 Aligned_cols=97 Identities=7% Similarity=-0.003 Sum_probs=80.6
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCC
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG 224 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tg 224 (346)
..+.+||++.++||..|+.|.+.|.....+.+-.+ .+.+..++++ ......++..|++...|++++++ .|
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~--~~~l~~vdv~------~~~~~~la~~~~V~g~PT~i~f~--~G 86 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR--AAPVQRLQMR------DPLPPGLELARPVTFTPTFVLMA--GD 86 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH--HSCEEEEETT------SCCCTTCBCSSCCCSSSEEEEEE--TT
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc--cceEEEEECC------CCCchhHHHHCCCCCCCEEEEEE--CC
Confidence 34789999999999999999998888877665554 4667778888 44445678889999999999999 69
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 225 EKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 225 e~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
+.+.++.|++.++.|+..|...+...+
T Consensus 87 ~ev~Ri~G~~~~~~f~~~L~~~l~~~~ 113 (116)
T 3dml_A 87 VESGRLEGYPGEDFFWPMLARLIGQAE 113 (116)
T ss_dssp EEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred EEEeeecCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999999887654
No 30
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=98.51 E-value=2.9e-07 Score=72.49 Aligned_cols=101 Identities=14% Similarity=0.251 Sum_probs=81.1
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
-..+|++++..|+..+|.++|++.++||..|+.+. +.+.++.++ .++.|..++.+ . ...++..|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~~~~~v~~~~v~~~------~--~~~~~~~~~ 76 (113)
T 1ti3_A 11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIA------PIFAELAKKFPNVTFLKVDVD------E--LKAVAEEWN 76 (113)
T ss_dssp SHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHH------HHHHHHHHHCSSEEEEEEETT------T--CHHHHHHHH
T ss_pred cHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHH------HHHHHHHHhCCCcEEEEEEcc------c--cHHHHHhCC
Confidence 35679999999999999999999999999999985 344455440 26889888877 3 246888899
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+..+|++.++. .|+.+..+.| .+++++.+.|.+++.
T Consensus 77 v~~~Pt~~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 77 VEAMPTFIFLK--DGKLVDKTVG-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp CSSTTEEEEEE--TTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred CCcccEEEEEe--CCEEEEEEec-CCHHHHHHHHHHhhc
Confidence 99999998884 6998888899 588888888877663
No 31
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=98.50 E-value=4.1e-07 Score=72.40 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=77.8
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++ .+|.++|++.++||..|+.+...+ +.+.+-++ .++.|..++.+. . ..++..|++
T Consensus 7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~-~~v~~~~vd~~~------~--~~l~~~~~v 69 (112)
T 2voc_A 7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMG-DKLKIVKIDVDE------N--QETAGKYGV 69 (112)
T ss_dssp CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHT-TTCEEEEEETTT------C--CSHHHHTTC
T ss_pred cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhC-CCcEEEEEECCC------C--HHHHHHcCC
Confidence 456788877 789999999999999999996554 45566666 689999998882 2 358889999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
..+|++.++ . .|+.+..+.|..+.++|.+.|.+.+
T Consensus 70 ~~~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~~~ 104 (112)
T 2voc_A 70 MSIPTLLVL-K-DGEVVETSVGFKPKEALQELVNKHL 104 (112)
T ss_dssp CSBSEEEEE-E-TTEEEEEEESCCCHHHHHHHHHTTS
T ss_pred CcccEEEEE-e-CCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 999999999 3 6999989999988876666555443
No 32
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=98.50 E-value=7.4e-07 Score=69.90 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=75.8
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI 222 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~ 222 (346)
...+|.++|++.++||..|+.+...+ +.+.+... .++.|..++.+ . ...++..|++..+|++.++.
T Consensus 19 ~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~-~~v~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~~~-- 84 (111)
T 3gnj_A 19 YDEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYE-ESFGFYYVDVE------E--EKTLFQRFSLKGVPQILYFK-- 84 (111)
T ss_dssp TTSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--CHHHHHHTTCCSSCEEEEEE--
T ss_pred HhcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcC-CceEEEEEECC------c--ChhHHHhcCCCcCCEEEEEE--
Confidence 35679999999999999999996544 45555556 67999999888 3 24688999999999999994
Q ss_pred CCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 223 TGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 223 tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.|+.+..+.|..+.+++.+.|.+.+.
T Consensus 85 ~g~~~~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 85 DGEYKGKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp TTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEeccCCHHHHHHHHHHHhc
Confidence 69999889999999999888888764
No 33
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=98.50 E-value=4.5e-07 Score=72.80 Aligned_cols=107 Identities=9% Similarity=0.209 Sum_probs=82.2
Q ss_pred CcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413 126 PVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC 205 (346)
Q Consensus 126 P~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~ 205 (346)
...+.-..+|++++..|+..+|+++|++.++||..|+.+... | ..+.+-.. ++.|..++.+ . ...++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~--~~~~~~vd~~------~--~~~~~ 80 (122)
T 2vlu_A 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPV-F--ADLAKKFP--NAVFLKVDVD------E--LKPIA 80 (122)
T ss_dssp CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT--TSEEEEEETT------T--CHHHH
T ss_pred ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC--CcEEEEEECC------C--CHHHH
Confidence 344455678999999999999999999999999999998532 2 12333333 3888888877 3 24688
Q ss_pred hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
..|++..+|++.++. .|+.+..+.|.. +++|.+.|.+.+.
T Consensus 81 ~~~~v~~~Pt~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 81 EQFSVEAMPTFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAA 120 (122)
T ss_dssp HHTTCCSSSEEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred HHcCCCcccEEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence 999999999987773 699888899987 8878777777654
No 34
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=98.48 E-value=7.1e-07 Score=71.91 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=75.7
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV 215 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~ 215 (346)
++......+.+|.+||++.++||..|+.+...+ ..+.+-+. .++.|..++.+ .. ..++..|++..+|+
T Consensus 21 ~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~-~~v~~~~vd~d------~~--~~l~~~~~v~~~Pt 88 (119)
T 1w4v_A 21 PDFQDRVVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQH-GKVVMAKVDID------DH--TDLAIEYEVSAVPT 88 (119)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TSSEEEEEETT------TT--HHHHHHTTCCSSSE
T ss_pred hhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCeEEEEEeCC------CC--HHHHHHcCCCcccE
Confidence 333444456789999999999999999996443 23444445 67999998887 32 46889999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 216 VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 216 i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
+.++ ..|+.+..+.|..+++.+.+.|.+.+
T Consensus 89 ~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 89 VLAM--KNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEE--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEE--eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 9999 37998888999889888887777654
No 35
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.47 E-value=4.7e-07 Score=70.35 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=77.5
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
+-..+|++++ .+|.++|++.++||..|+.+...+ ..+.+-++ +++.|..++.+ . ...++..|+
T Consensus 8 l~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~ 70 (106)
T 3die_A 8 VTDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYE-GKADILKLDVD------E--NPSTAAKYE 70 (106)
T ss_dssp CCTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTT
T ss_pred CCHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhc-CCcEEEEEECC------c--CHHHHHhCC
Confidence 3456777777 789999999999999999996544 55555566 67888888877 2 246889999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+..+|++.++. .|+.+..+.|..+.+++.+.|.+
T Consensus 71 v~~~Pt~~~~~--~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 71 VMSIPTLIVFK--DGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp CCSBSEEEEEE--TTEEEEEEESCCCHHHHHHHHHT
T ss_pred CcccCEEEEEe--CCeEEEEEeCCCCHHHHHHHHHH
Confidence 99999999996 69999999998888777766654
No 36
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.47 E-value=7.8e-07 Score=70.09 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=79.8
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++.. ...+|.++|++.++||..|+.+...+ +.+.+... .++.|..++.+ .. ..++..|++.
T Consensus 14 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~v~~~~v~~~------~~--~~~~~~~~v~ 78 (115)
T 1thx_A 14 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYS-DRLKVVKLEID------PN--PTTVKKYKVE 78 (115)
T ss_dssp GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTT-TTCEEEEEEST------TC--HHHHHHTTCC
T ss_pred ccchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhC-CcEEEEEEEcC------CC--HHHHHHcCCC
Confidence 34555544 46789999999999999999996544 45555566 67999998887 32 4688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.+|++.++ + .|+.+..+.|..+.+++.+.|.+.+.
T Consensus 79 ~~Pt~~~~-~-~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 79 GVPALRLV-K-GEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp SSSEEEEE-E-TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred ceeEEEEE-c-CCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 99999999 3 79998889999899888888887764
No 37
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=98.47 E-value=4.5e-07 Score=74.76 Aligned_cols=105 Identities=13% Similarity=0.236 Sum_probs=84.3
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
....+|++++..|+..+|+++|++.++||..|+.+.. .+.++.+ -.++.|..++.+ . ...++..|
T Consensus 30 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~~~~~v~~~~v~~~------~--~~~~~~~~ 95 (139)
T 3d22_A 30 TTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP------YYIELSENYPSLMFLVIDVD------E--LSDFSASW 95 (139)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--SHHHHHHT
T ss_pred CCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEeCc------c--cHHHHHHc
Confidence 3457899999999999999999999999999999964 3444443 025888888887 3 25688999
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
++..+|++.++ ..|+.+..+.|. +++++.+.|.+.+..-+
T Consensus 96 ~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~~~~~~ 135 (139)
T 3d22_A 96 EIKATPTFFFL--RDGQQVDKLVGA-NKPELHKKITAILDSLP 135 (139)
T ss_dssp TCCEESEEEEE--ETTEEEEEEESC-CHHHHHHHHHHHHHTSC
T ss_pred CCCcccEEEEE--cCCeEEEEEeCC-CHHHHHHHHHHHhccCC
Confidence 99999999888 379999899998 88888888888876544
No 38
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=98.46 E-value=7.4e-07 Score=69.58 Aligned_cols=98 Identities=15% Similarity=0.286 Sum_probs=75.8
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV 215 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~ 215 (346)
++......+.+|.++|++.++||..|+.+...+ +.+.+-++ .++.|..++.+ . ...++..|++..+|+
T Consensus 9 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~v~~~Pt 76 (107)
T 1dby_A 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYK-DKLKCVKLNTD------E--SPNVASEYGIRSIPT 76 (107)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHHTCCSSCE
T ss_pred HHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhC-CceEEEEEECC------C--CHHHHHHCCCCcCCE
Confidence 333444556789999999999999999996543 44555555 67889888877 3 246888999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 216 VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 216 i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
+.++ ..|+.+..+.|..+.+++.+.|.+.+
T Consensus 77 ~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 77 IMVF--KGGKKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEE--SSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEE--eCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 8877 37999988999988888877777654
No 39
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.45 E-value=5.9e-07 Score=69.86 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=76.5
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|+++. .+.+|.++|++.++||..|+.+...+ +.+.+-+. .++.|..++.+ .. ..++..|++.
T Consensus 9 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~ 73 (107)
T 2i4a_A 9 DSSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFA-GKVTVAKVNID------DN--PETPNAYQVR 73 (107)
T ss_dssp TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TSEEEEEEETT------TC--CHHHHHTTCC
T ss_pred hhhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhC-CcEEEEEEECC------CC--HHHHHhcCCC
Confidence 34565544 46789999999999999999996554 45556666 68999999888 22 3688899999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.+|++.++ ..|+.+..+.|..+.+.+.+.|.+
T Consensus 74 ~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 74 SIPTLMLV--RDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp SSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHH
T ss_pred ccCEEEEE--eCCEEEEEecCCCCHHHHHHHHHh
Confidence 99999999 369999889998888877766654
No 40
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=98.44 E-value=9.3e-07 Score=69.13 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=77.0
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++.. .+.+|.++|++.++||..|+.+...+ ..+.+-.+ .++.|..++.+ .. ..++..|++.
T Consensus 9 ~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~ 73 (108)
T 2trx_A 9 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------QN--PGTAPKYGIR 73 (108)
T ss_dssp TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETT------TC--TTHHHHTTCC
T ss_pred hhhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhC-CCcEEEEEECC------CC--HHHHHHcCCc
Confidence 34555443 46789999999999999999996543 34555555 68999999887 22 3578899999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.+|++.++ + .|+.+..+.|..++++|.+.|.+.+
T Consensus 74 ~~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 74 GIPTLLLF-K-NGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp SSSEEEEE-E-TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ccCEEEEE-e-CCEEEEEEecCCCHHHHHHHHHHhh
Confidence 99999999 3 7999888999989888887777654
No 41
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.44 E-value=1.1e-06 Score=73.40 Aligned_cols=103 Identities=11% Similarity=0.169 Sum_probs=82.9
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++ ..+|++||++.++||..|+.+...+ ..+.+-++ .++.|..++.+ . ...++..|++
T Consensus 44 ~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~-~~~~~~~vd~~------~--~~~l~~~~~v 107 (148)
T 3p2a_A 44 TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERA-GKVRFVKVNTE------A--EPALSTRFRI 107 (148)
T ss_dssp CTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTC
T ss_pred CHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CceEEEEEECc------C--CHHHHHHCCC
Confidence 355677666 7789999999999999999995433 34444555 67899998877 3 2468899999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
..+|++.++. .|+.+..+.|..+.+.|.+.|.+.+...+
T Consensus 108 ~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~~ 146 (148)
T 3p2a_A 108 RSIPTIMLYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRDP 146 (148)
T ss_dssp CSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHSCC
T ss_pred CccCEEEEEE--CCeEEEEEeCCCCHHHHHHHHHHHhcccC
Confidence 9999999995 69999999999999999999998887643
No 42
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.43 E-value=5.4e-07 Score=70.04 Aligned_cols=98 Identities=12% Similarity=0.230 Sum_probs=76.6
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++++ +.+|+++|++.++||..|+.+...+ +.+.+-+. .++.|..++.+ .. ..++..|++.
T Consensus 8 ~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~ 71 (109)
T 2yzu_A 8 DQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYE-GKLLVAKLDVD------EN--PKTAMRYRVM 71 (109)
T ss_dssp TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTB-TTBEEEEEETT------TC--HHHHHHTTCC
T ss_pred HhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhh-CceEEEEEECC------CC--HhHHHhCCCC
Confidence 44566554 4689999999999999999996543 45555566 68999999887 32 4688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.+|++.++ ..|+.+..+.|..+.+++.+.|.+.+
T Consensus 72 ~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 72 SIPTVILF--KDGQPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp SSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred cCCEEEEE--eCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence 99999999 36998888999888877777666544
No 43
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.42 E-value=1.1e-06 Score=67.45 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=76.0
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++++ +.+|.++|++.++||..|+.+...+ ..+.+-+. + +.|..++.+ . ...++..|++.
T Consensus 6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~-~~~~~v~~~------~--~~~~~~~~~v~ 68 (104)
T 2e0q_A 6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYP-Q-VGFGKLNSD------E--NPDIAARYGVM 68 (104)
T ss_dssp TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT-T-SEEEEEETT------T--CHHHHHHTTCC
T ss_pred HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcC-C-ceEEEEECC------C--CHHHHHhCCcc
Confidence 45677777 4689999999999999999995432 23334444 4 888888877 2 24688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.+|++.++ ..|+.+..+.|..+.+.+.+.|.+.+.
T Consensus 69 ~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 69 SLPTVIFF--KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp SSCEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred ccCEEEEE--ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999 369988889998898888888877664
No 44
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1e-06 Score=69.65 Aligned_cols=98 Identities=14% Similarity=0.320 Sum_probs=73.0
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
.+|++++.. +..+|+++|++.++||..|+.+.. .+.++.+ ..++.|..++.+ .. ..++..|+
T Consensus 9 ~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~~~~vd~~------~~--~~~~~~~~ 73 (112)
T 3d6i_A 9 EQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQ------VFEAISNEPSNSNVSFLSIDAD------EN--SEISELFE 73 (112)
T ss_dssp HHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHH------HHHHHHHCGGGTTSEEEEEETT------TC--HHHHHHTT
T ss_pred HHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCCCCEEEEEEecc------cC--HHHHHHcC
Confidence 457777765 567899999999999999999864 3444443 147999999887 32 46888999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+..+|++.++. .|+.+..+.|. .++++.+.|.+.+.
T Consensus 74 v~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~ 109 (112)
T 3d6i_A 74 ISAVPYFIIIH--KGTILKELSGA-DPKEYVSLLEDCKN 109 (112)
T ss_dssp CCSSSEEEEEE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred CCcccEEEEEE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence 99999998884 69999999996 55567666666653
No 45
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=98.42 E-value=2.3e-07 Score=72.25 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=73.4
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.+|+++ .+.+|.++|++.++||..|+.+...+ +.+.+-.. .++.|..++.+ . ...++..|++..
T Consensus 8 ~~~~~~----~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~-~~v~~~~v~~~------~--~~~~~~~~~v~~ 71 (105)
T 1nsw_A 8 ANFQQA----IQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHA-DKVTVAKLNVD------E--NPETTSQFGIMS 71 (105)
T ss_dssp TTHHHH----HSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TTCEEEEEETT------T--CHHHHHHTTCCS
T ss_pred HhHHHH----HhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCcEEEEEECc------C--CHHHHHHcCCcc
Confidence 445543 45679999999999999999996544 45555556 67899998887 3 246889999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+|++.++ + .|+.+..+.|..+++++.+.|.+
T Consensus 72 ~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 72 IPTLILF-K-GGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp SSEEEEE-E-TTEEEEEEESCCCHHHHHHHTTT
T ss_pred ccEEEEE-e-CCeEEEEEecCCCHHHHHHHHHH
Confidence 9999999 3 69988889998888776665543
No 46
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=98.41 E-value=6e-07 Score=74.02 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=72.7
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCC
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG 224 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tg 224 (346)
.+|.+||++.++||..|+.+...+ ..+.+-+. .++.|+.++.+ . ...++..|++..+|++.++++ .|
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~v~~~Pt~~~~~~-~g 116 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYA-GKIYIYKVNVD------K--EPELARDFGIQSIPTIWFVPM-KG 116 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTCCSSSEEEEECS-SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CceEEEEEECC------C--CHHHHHHcCCCCcCEEEEEeC-CC
Confidence 689999999999999999996544 55555566 78999998887 3 246899999999999999996 57
Q ss_pred ceEEEEeCCCChHHHHHHHHHHHH
Q 036413 225 EKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 225 e~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+.+ ...|..+.++|.+.|.+.+.
T Consensus 117 ~~~-~~~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 117 EPQ-VNMGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp CCE-EEESCCCHHHHHHHHHHTTC
T ss_pred CEE-EEeCCCCHHHHHHHHHHHHc
Confidence 765 77898898888877776553
No 47
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=98.41 E-value=8.5e-07 Score=73.24 Aligned_cols=107 Identities=12% Similarity=0.174 Sum_probs=81.7
Q ss_pred ccCHHHHHHHhh--------hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH
Q 036413 132 NGSFEKAKDVGS--------DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK 203 (346)
Q Consensus 132 ~gsf~~A~~~Ak--------~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~ 203 (346)
..+|.+.+..+. +.+|.+||++.++||..|+.+...+ ..+.+-++ .++.|..++.+ .. ..
T Consensus 16 ~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~-~~v~~~~vd~~------~~--~~ 83 (136)
T 2l5l_A 16 KAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPIL---DELAKEYD-GQIVIYKVDTE------KE--QE 83 (136)
T ss_dssp HHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------TC--HH
T ss_pred chHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhc-CCEEEEEEeCC------CC--HH
Confidence 345555554433 4679999999999999999996543 34555556 67999998887 32 46
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
++..|++..+|++.++++ .|+.+ .+.|..+.++|.+.|.+.+.....
T Consensus 84 l~~~~~v~~~Pt~~~~~~-~G~~~-~~~G~~~~~~l~~~l~~~~~~~~~ 130 (136)
T 2l5l_A 84 LAGAFGIRSIPSILFIPM-EGKPE-MAQGAMPKASFKKAIDEFLLKKEG 130 (136)
T ss_dssp HHHHTTCCSSCEEEEECS-SSCCE-EEESCCCHHHHHHHHHHHHTSCTT
T ss_pred HHHHcCCCCCCEEEEECC-CCcEE-EEeCCCCHHHHHHHHHHHhhccCC
Confidence 889999999999999986 68876 678988999888888887765543
No 48
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.40 E-value=7.6e-07 Score=70.23 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=74.1
Q ss_pred HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
...+.+|.++|++.++||..|+.+...+ ..+.+-+. .++.|..++.+ .. ..++..|++..+|++.++.
T Consensus 18 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~~~Pt~~~~~ 85 (112)
T 1t00_A 18 DVLKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYG-DKIEIVKLNID------EN--PGTAAKYGVMSIPTLNVYQ 85 (112)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------TC--HHHHHHTTCCSSSEEEEEE
T ss_pred HHhhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhc-CCeEEEEEEcC------CC--HHHHHhCCCCcccEEEEEe
Confidence 3345689999999999999999986433 34444455 67999998887 32 4688999999999988873
Q ss_pred CCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 221 PITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 221 p~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.|+.+..+.|..+.+++.+.|.+.+.
T Consensus 86 --~G~~~~~~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 86 --GGEVAKTIVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp --TTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred --CCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence 69998889999898888888877663
No 49
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.39 E-value=8.5e-07 Score=73.68 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=84.1
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
-+-++......+.+|++||++.++||..|+.+...+ +.+.+-+. .++.|..++.+ .. ..++..|++..
T Consensus 11 l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~-~~v~~~~vd~~------~~--~~l~~~~~v~~ 78 (140)
T 3hz4_A 11 FEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYG-SSAVFGRINIA------TN--PWTAEKYGVQG 78 (140)
T ss_dssp ECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTSEEEEEETT------TC--HHHHHHHTCCE
T ss_pred cchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhC-CceEEEEEECC------cC--HhHHHHCCCCc
Confidence 344444556667799999999999999999996544 56666666 77999998887 32 56889999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+|+++++. .|+.+....|..+++.|.+.|.+.+...
T Consensus 79 ~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 114 (140)
T 3hz4_A 79 TPTFKFFC--HGRPVWEQVGQIYPSILKNAVRDMLQHG 114 (140)
T ss_dssp ESEEEEEE--TTEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEe--CCcEEEEEcCCCCHHHHHHHHHHHhccc
Confidence 99999984 6999989999999999999999888653
No 50
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.38 E-value=1e-06 Score=68.41 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=72.9
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.+|++++..+ .+|.++|++.++||..|+.+...+ +.+.+-.. ++.|..++.+ . ...++..|++..
T Consensus 9 ~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~--~~~~~~vd~~------~--~~~~~~~~~v~~ 73 (105)
T 3m9j_A 9 TAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS--NVIFLEVDVD------D--CQDVASESEVKS 73 (105)
T ss_dssp HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST--TSEEEEEETT------T--CHHHHHHTTCCB
T ss_pred HHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc--CeEEEEEEhh------h--hHHHHHHcCCCc
Confidence 4566666544 689999999999999999996433 22333333 4888888777 2 356889999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+|++.++. .|+.+..+.|. +++++.+.|.+.
T Consensus 74 ~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 74 MPTFQFFK--KGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp SSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred CcEEEEEE--CCeEEEEEeCC-CHHHHHHHHHHh
Confidence 99999994 59999999998 888777776654
No 51
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.37 E-value=9.1e-07 Score=68.53 Aligned_cols=97 Identities=14% Similarity=0.297 Sum_probs=75.4
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.+|+++. .+.+|.++|++.++||..|+.+...+ ..+.+-++ .++.|..++.+ . ...++..|++..
T Consensus 8 ~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~v~~ 72 (105)
T 1fb6_A 8 SSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYS-GKIAVYKLNTD------E--APGIATQYNIRS 72 (105)
T ss_dssp TTHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTCCS
T ss_pred hhHHHHH---hcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhc-CceEEEEEcCc------c--hHHHHHhCCCCc
Confidence 3455543 34589999999999999999997554 45555566 67999888877 3 246889999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+|++.++. .|+.+..+.|..+.+.+.+.|.+.
T Consensus 73 ~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 73 IPTVLFFK--NGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp SSEEEEEE--TTEEEEEEEECCCHHHHHHHHHHH
T ss_pred ccEEEEEe--CCeEEEEEecCCCHHHHHHHHHhh
Confidence 99988773 699888899988888887777654
No 52
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=98.37 E-value=6.5e-07 Score=73.04 Aligned_cols=114 Identities=8% Similarity=0.108 Sum_probs=77.6
Q ss_pred hhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCC
Q 036413 115 NNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD 194 (346)
Q Consensus 115 ~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~ 194 (346)
+...+.++|.+--.+ ...-.+....+..++|.+||++.++||..|+.+...+ +.+.+-++ .++.|..++.+
T Consensus 13 f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~-~~v~~~~vd~d--- 83 (128)
T 3ul3_B 13 FDKYYLRMFKKVPRL--QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYG-KRIYLLKVDLD--- 83 (128)
T ss_dssp -------------CC--CCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHG-GGEEEEEEEGG---
T ss_pred HHHHHHHHhccCCcc--ccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhc-CCeEEEEEECC---
Confidence 334455566442221 1222233566678899999999999999999996554 45556666 78999999887
Q ss_pred CCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 195 DDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 195 ~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
.. ..++..|++..+|++.++. .|+.+....|..+.+++.+.|.
T Consensus 84 ---~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 84 ---KN--ESLARKFSVKSLPTIILLK--NKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp ---GC--HHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHT
T ss_pred ---CC--HHHHHHcCCCCcCEEEEEE--CCEEEEEecCCCCHHHHHHHHH
Confidence 32 4789999999999999994 6999999999989877766554
No 53
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.35 E-value=1.1e-06 Score=72.23 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=77.9
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++.. .+.+|.+||++.++||..|+.+...+ +.+.+.+. .++.|..++.+. . ..++..|++.
T Consensus 29 ~~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~~v~~~~vd~~~------~--~~l~~~~~v~ 93 (128)
T 2o8v_B 29 DDSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQ-GKLTVAKLNIDQ------N--PGTAPKYGIR 93 (128)
T ss_dssp TTTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTT-TTEEEEEEETTT------C--CTTSGGGTCC
T ss_pred hhhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhc-CCeEEEEEECCC------C--HHHHHHcCCC
Confidence 44565443 56789999999999999999996543 34555556 689999998882 2 3578899999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.+|++.++ ..|+.+..+.|..+.++|.+.|.+.+
T Consensus 94 ~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 94 GIPTLLLF--KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp SSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ccCEEEEE--eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 99999999 37998888999989888888877655
No 54
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=98.34 E-value=2e-06 Score=68.23 Aligned_cols=91 Identities=15% Similarity=0.269 Sum_probs=67.6
Q ss_pred HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413 139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i 218 (346)
++.+.+++|++||++.++||..|+.+...+ +.+.+-.. ++.|..++.+ . ...++..|++..+|++.+
T Consensus 17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l---~~l~~~~~--~~~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~ 83 (109)
T 3f3q_A 17 FDSAIAQDKLVVVDFYATWCGPCKMIAPMI---EKFSEQYP--QADFYKLDVD------E--LGDVAQKNEVSAMPTLLL 83 (109)
T ss_dssp HHHHTTSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT--TSEEEEEETT------T--CHHHHHHTTCCSSSEEEE
T ss_pred HHHHHhcCCEEEEEEECCcCHhHHHHHHHH---HHHHHHCC--CCEEEEEECC------C--CHHHHHHcCCCccCEEEE
Confidence 344556699999999999999999996433 22222223 4777777776 2 246889999999999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 219 IDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 219 idp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
++ .|+.+..+.|. +++++.+.|.+
T Consensus 84 ~~--~G~~~~~~~G~-~~~~l~~~i~~ 107 (109)
T 3f3q_A 84 FK--NGKEVAKVVGA-NPAAIKQAIAA 107 (109)
T ss_dssp EE--TTEEEEEEESS-CHHHHHHHHHH
T ss_pred EE--CCEEEEEEeCC-CHHHHHHHHHh
Confidence 98 69999999997 66666665554
No 55
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.33 E-value=2.2e-06 Score=66.50 Aligned_cols=96 Identities=13% Similarity=0.252 Sum_probs=72.6
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.+|++++.. .++|+++|++.++||..|+.+...+ ..+.+-.+ .++.|..++.+ .. ..++..|++..
T Consensus 9 ~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~~ 74 (106)
T 1xwb_A 9 ADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFA-DNVVVLKVDVD------EC--EDIAMEYNISS 74 (106)
T ss_dssp HHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETT------TC--HHHHHHTTCCS
T ss_pred HHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhC-CCeEEEEEecc------ch--HHHHHHcCCCc
Confidence 356666643 4789999999999999999996543 34455555 68999999887 32 46889999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+|++.++. .|+.+..+.| .+++.+.+.|.+
T Consensus 75 ~Pt~~~~~--~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 75 MPTFVFLK--NGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp SSEEEEEE--TTEEEEEEES-CCHHHHHHHHHH
T ss_pred ccEEEEEc--CCcEEEEEcC-CCHHHHHHHHHH
Confidence 99987774 6998888999 677766555543
No 56
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.32 E-value=5.2e-07 Score=70.86 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=64.1
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
.+++|.++|++.++||..|+.+. +.+.++.++ .++.|..++.+. . ..++..|++..+|++.++.
T Consensus 15 ~~~~~~vlv~f~a~wC~~C~~~~------p~~~~~~~~~~~~~~~~vd~~~------~--~~l~~~~~v~~~Pt~~~~~- 79 (105)
T 4euy_A 15 IEEQQLVLLFIKTENCGVCDVML------RKVNYVLENYNYVEKIEILLQD------M--QEIAGRYAVFTGPTVLLFY- 79 (105)
T ss_dssp TTCSSEEEEEEEESSCHHHHHHH------HHHHHHHHTCTTEEEEEEEECC------C-----------CCCCEEEEEE-
T ss_pred HhcCCCEEEEEeCCCCcchHHHH------HHHHHHHHHcCCceEEEEECCC------C--HHHHHhcCCCCCCEEEEEe-
Confidence 36789999999999999999984 455555551 268999988882 2 3688899999999999996
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.|+.+....|..+.++|.+.|.+++
T Consensus 80 -~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 80 -NGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp -TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred -CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 6999989999999888887776543
No 57
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.31 E-value=1.8e-06 Score=70.76 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=74.2
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.+|++++ ..+|++||++.++||..|+.+... +.++.++ .++.|..++.+ .. ..++..|++.
T Consensus 28 ~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~vd~d------~~--~~l~~~~~v~ 89 (125)
T 1r26_A 28 EQFRNIM----SEDILTVAWFTAVWCGPCKTIERP------MEKIAYEFPTVKFAKVDAD------NN--SEIVSKCRVL 89 (125)
T ss_dssp HHHHHHH----HSSSCEEEEEECTTCHHHHHTHHH------HHHHHHHCTTSEEEEEETT------TC--HHHHHHTTCC
T ss_pred HHHHHHH----ccCCEEEEEEECCcCHhHHHHHHH------HHHHHHHCCCCEEEEEECC------CC--HHHHHHcCCC
Confidence 4566665 688999999999999999999543 3444330 26899999887 32 4688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.+|++.|+ ..|+.+..+.| .++++|.+.|.+.+..
T Consensus 90 ~~Pt~~i~--~~G~~~~~~~G-~~~~~l~~~l~~~l~~ 124 (125)
T 1r26_A 90 QLPTFIIA--RSGKMLGHVIG-ANPGMLRQKLRDIIKD 124 (125)
T ss_dssp SSSEEEEE--ETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred cccEEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence 99998877 36998888999 6888888888777653
No 58
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.8e-06 Score=68.84 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=78.1
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc---CcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA---SNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~---~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
..+|+++. .+.+|.+||++.++||..|+.+...+ ..+.+-+++ .++.|..++.+ . ...++..|
T Consensus 14 ~~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~------~--~~~l~~~~ 79 (133)
T 1x5d_A 14 DDSFDKNV---LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDAT------V--NQVLASRY 79 (133)
T ss_dssp TTHHHHHT---TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETT------T--CCHHHHHH
T ss_pred HhhHHHHH---hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECC------C--CHHHHHhC
Confidence 34455433 45689999999999999999986443 233332220 47899888877 2 24688899
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
++..+|++.++++ |+.+..+.|..+.++|.+.|.+.+...
T Consensus 80 ~v~~~Pt~~~~~~--g~~~~~~~G~~~~~~l~~~l~~~~~~~ 119 (133)
T 1x5d_A 80 GIRGFPTIKIFQK--GESPVDYDGGRTRSDIVSRALDLFSDN 119 (133)
T ss_dssp TCCSSSEEEEEET--TEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred CCCeeCeEEEEeC--CCceEEecCCCCHHHHHHHHHHHhhcc
Confidence 9999999999996 888888899889999999998888653
No 59
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.29 E-value=3.2e-07 Score=86.12 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=41.0
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
..++++|.+||+| ||+++.+|++||++++||||.|++.||+.+.
T Consensus 13 ~~~~~~i~qF~~i-Tg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 13 SPEQEAIESFTSL-TKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp CHHHHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 5688899999999 8999999999999999999999999998754
No 60
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=98.29 E-value=4.4e-07 Score=78.04 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=84.5
Q ss_pred HHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh--ccCcEEEEEeecCCCCC
Q 036413 118 NLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI--RASNFIFWQVYDDDDDD 195 (346)
Q Consensus 118 ~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i--~~~nFVfw~~~~~~~~~ 195 (346)
.+...|++.... -+|++++..+..++|++||++..+||..|+.+... |.. +.++. + -+|+..-++..
T Consensus 21 ~~~~~~~~~i~w---~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~-l~~--~~~~~~~~-~~~~~v~~d~~---- 89 (164)
T 1sen_A 21 GLGKGFGDHIHW---RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPK-FAE--STEISELS-HNFVMVNLEDE---- 89 (164)
T ss_dssp -CCTTSCTTSCB---CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-HHT--CHHHHHHH-TTSEEEEEEGG----
T ss_pred cccccccccccc---cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHH-HHH--HHHHhhcC-CeEEEEEecCC----
Confidence 334455565543 68999999999999999999999999999999763 333 22222 3 45665554433
Q ss_pred CCChHHHHHHhhcCC--CCCceEEEEeCCCCceEEEEeCC----------CChHHHHHHHHHHHHcCCc
Q 036413 196 DDDSECRKVCGYYKL--DSLPVVLVIDPITGEKMRKWCGM----------VDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 196 ~~~~eg~~~~~~y~~--~~~P~i~iidp~tge~l~~~~G~----------~~~~~~i~~L~~fl~~~~~ 252 (346)
.. .++..|.+ ..+|++.++|+ .|+.+..+.|. .++++|++.|.+.++....
T Consensus 90 --~~---~~~~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 152 (164)
T 1sen_A 90 --EE---PKDEDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG 152 (164)
T ss_dssp --GS---CSCGGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred --ch---HHHHHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence 11 14566777 56999999996 68888777774 7889999999998876543
No 61
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.29 E-value=2.2e-06 Score=68.38 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=71.8
Q ss_pred HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413 139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i 218 (346)
...+.+.+|.+||+++++||..|+.+...+ +.+.+-.. .++.|..++.+ . ...++..|++..+|++.+
T Consensus 23 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~i~~~Pt~~~ 90 (121)
T 2i1u_A 23 ATDVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERA-TDLTVAKLDVD------T--NPETARNFQVVSIPTLIL 90 (121)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTCCSSSEEEE
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCeEEEEEECC------C--CHHHHHhcCCCcCCEEEE
Confidence 344456789999999999999999996544 45555555 67999998887 3 246889999999999988
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 219 IDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 219 idp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
+. .|+.+....|..+.++|.+.|.
T Consensus 91 ~~--~g~~~~~~~G~~~~~~l~~~l~ 114 (121)
T 2i1u_A 91 FK--DGQPVKRIVGAKGKAALLRELS 114 (121)
T ss_dssp EE--TTEEEEEEESCCCHHHHHHHTC
T ss_pred EE--CCEEEEEecCCCCHHHHHHHHH
Confidence 85 6998888999888776655543
No 62
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.28 E-value=3.4e-06 Score=69.19 Aligned_cols=101 Identities=9% Similarity=0.239 Sum_probs=77.5
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCCCCCChHHHHHHhh
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDDDDDDSECRKVCGY 207 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~~~~~~eg~~~~~~ 207 (346)
-..+|++++ +.+|.+||++.++||..|+.+...+ ..+.+.++ . +++|..++.+ . ...++..
T Consensus 23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~v~~~~vd~~------~--~~~~~~~ 86 (140)
T 2dj1_A 23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLK-DNDPPIAVAKIDAT------S--ASMLASK 86 (140)
T ss_dssp CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHH-SSSSCCEEEEECTT------T--CHHHHHH
T ss_pred ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHh-ccCCceEEEEEeCc------c--cHHHHHH
Confidence 456677765 3589999999999999999986443 23444444 3 3889888777 2 2568899
Q ss_pred cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
|++..+|++.|+. .|+ +..+.|..+.+.|.+.|.+.+...
T Consensus 87 ~~v~~~Pt~~~~~--~G~-~~~~~g~~~~~~l~~~l~~~~~~~ 126 (140)
T 2dj1_A 87 FDVSGYPTIKILK--KGQ-AVDYDGSRTQEEIVAKVREVSQPD 126 (140)
T ss_dssp TTCCSSSEEEEEE--TTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred CCCCccCeEEEEE--CCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence 9999999999994 588 777889899998888888877543
No 63
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.28 E-value=5.3e-06 Score=64.77 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=75.1
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-----CcEEEEEeecCCCCCCCChHHHHH
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-----SNFIFWQVYDDDDDDDDDSECRKV 204 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-----~nFVfw~~~~~~~~~~~~~eg~~~ 204 (346)
+-..+|++++. +|.+||++.++||..|+.+. +.+.++.++ .++.|..++.+ . ...+
T Consensus 10 l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~------~--~~~l 70 (111)
T 3uvt_A 10 LTENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCT------A--ERNI 70 (111)
T ss_dssp CCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETT------T--CHHH
T ss_pred cChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEecc------c--cHhH
Confidence 34667888876 78999999999999999884 566666651 26888888877 3 2468
Q ss_pred HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 205 ~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+..|++..+|++.++. .|+.+..+.|..+.++|.+.|.+
T Consensus 71 ~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 71 CSKYSVRGYPTLLLFR--GGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp HHHTTCCSSSEEEEEE--TTEEEEEECSCCSHHHHHHHHHH
T ss_pred HHhcCCCcccEEEEEe--CCcEEEeccCCcCHHHHHHHHHh
Confidence 9999999999999884 68988899998888877776654
No 64
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.27 E-value=1.7e-06 Score=69.36 Aligned_cols=104 Identities=10% Similarity=0.064 Sum_probs=78.9
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
+-++......+.+|.+||++.++||..|+.+...+ ..+.+.+. .++.|..++.+ .. ..++..|++..+
T Consensus 9 ~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~~ 76 (122)
T 3aps_A 9 TPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIK-GKVRAGKVDCQ------AY--PQTCQKAGIKAY 76 (122)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTCEEEEEETT------TC--HHHHHHTTCCSS
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCeEEEEEeCc------CC--HHHHHHcCCCcc
Confidence 33444455667899999999999999999996543 44555566 68999999887 32 468899999999
Q ss_pred ceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHHHHcCC
Q 036413 214 PVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~fl~~~~ 251 (346)
|++.++++ .|+ +..+.|. .+++.+.+.|.+.+...+
T Consensus 77 Pt~~~~~~-~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 116 (122)
T 3aps_A 77 PSVKLYQY-ERA-KKSIWEEQINSRDAKTIAALIYGKLETLQ 116 (122)
T ss_dssp SEEEEEEE-EGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeC-CCc-cceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence 99999985 334 5555664 789999999988887643
No 65
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.27 E-value=3.2e-06 Score=69.14 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=74.5
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-------------------hHHHH
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-------------------SECRK 203 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-------------------~eg~~ 203 (346)
.-.+|++||++.++||..|+.+...+ ..+.+-+. +++.|..++.+....+.+ .....
T Consensus 26 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 101 (148)
T 2b5x_A 26 LIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQ-DQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHA 101 (148)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCH
T ss_pred hcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhc-CCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchh
Confidence 34679999999999999998875432 22333344 448888887662111000 11346
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus 102 ~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 102 LTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp HHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 788899999999999997 699999999988899999998888764
No 66
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.27 E-value=2.9e-06 Score=75.38 Aligned_cols=112 Identities=19% Similarity=0.269 Sum_probs=85.8
Q ss_pred hcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh
Q 036413 122 LYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS 199 (346)
Q Consensus 122 lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~ 199 (346)
+|.+...+ +-..+|+.++ ..+|++||++.++||..|+.+...+ +.+.+-++ .++.|..++.+ ..
T Consensus 92 ~~~~~~~v~~l~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~-~~v~~~~vd~~------~~ 157 (210)
T 3apq_A 92 IYDDDPEIITLERREFDAAV----NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVD-GLLRIGAVNCG------DD 157 (210)
T ss_dssp TTTTCTTSEECCHHHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTB-TTBEEEEEETT------TC
T ss_pred ccCCCCceEEecHHHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhc-CceEEEEEECC------cc
Confidence 44444443 2234566655 6789999999999999999996533 45555566 78999999887 32
Q ss_pred HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
..++..|++..+|++.++ ..|+.+....|..+.++|.+.|.+.+....
T Consensus 158 --~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~ 205 (210)
T 3apq_A 158 --RMLCRMKGVNSYPSLFIF--RSGMAAVKYNGDRSKESLVAFAMQHVRSTV 205 (210)
T ss_dssp --HHHHHHTTCCSSSEEEEE--CTTSCCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHcCCCcCCeEEEE--ECCCceeEecCCCCHHHHHHHHHHhCcccc
Confidence 468899999999999999 468888889999999999999988886543
No 67
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.26 E-value=5.4e-06 Score=68.59 Aligned_cols=100 Identities=9% Similarity=0.117 Sum_probs=75.9
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH---------------------H
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE---------------------C 201 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e---------------------g 201 (346)
.-.+|++||++.++||..|+.+...+ ..+.+-+.+.++.+..++.+ ... .
T Consensus 27 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d------~~~~~~~~~~~~~~~~~~~~~~d~~ 97 (152)
T 2lja_A 27 DLKGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCD------KNKKAWENMVTKDQLKGIQLHMGTD 97 (152)
T ss_dssp TTTTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECC------SCHHHHHHHHHHHTCCSEEEECSSC
T ss_pred HcCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEcc------CcHHHHHHHHHhcCCCCceeecCcc
Confidence 34589999999999999998775332 12223233247989988887 322 1
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
..++..|++..+|++.|||+ .|+.+....|..+++++.+.|...+.....
T Consensus 98 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~ 147 (152)
T 2lja_A 98 RTFMDAYLINGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNELLGLEGH 147 (152)
T ss_dssp THHHHHTTCCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHHHTCCSS
T ss_pred hhHHHHcCcCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHHhccccc
Confidence 26778899999999999997 599988888988889999999888876653
No 68
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.26 E-value=3.5e-06 Score=69.57 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=72.9
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|.+++. +.++ ++|++.++||..|+.+...+ +.+.+-+. .++.|+.++.+ .. ..++..|++.
T Consensus 40 ~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~-~~v~~~~vd~~------~~--~~l~~~~~v~ 103 (140)
T 1v98_A 40 EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHA-GRLKVVKVNVD------EH--PGLAARYGVR 103 (140)
T ss_dssp ------------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETT------TC--HHHHHHTTCC
T ss_pred HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHcc-CceEEEEEECC------CC--HHHHHHCCCC
Confidence 445555544 3456 99999999999999996544 34555555 68999999888 32 4688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.+|++.++. .|+.+..+.|..+.++|.+.|.+.++
T Consensus 104 ~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 104 SVPTLVLFR--RGAPVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp SSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred ccCEEEEEe--CCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence 999999994 69998889999898888888887775
No 69
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=98.25 E-value=2.3e-06 Score=67.91 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=71.7
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
.-..+|+++++ .+|.+||++.++||..|+.+...+ +.+.+-.. ++.|..++.+ . ...++..|+
T Consensus 14 ~~~~~f~~~~~----~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~--~v~~~~vd~~------~--~~~~~~~~~ 76 (112)
T 1syr_A 14 TSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT--KMVFIKVDVD------E--VSEVTEKEN 76 (112)
T ss_dssp CSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT--TSEEEEEETT------T--THHHHHHTT
T ss_pred CCHHHHHHHHc----cCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC--CCEEEEEECC------C--CHHHHHHcC
Confidence 34556777773 789999999999999999996433 22333223 5888888877 3 246889999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+..+|++.++. .|+.+..+.|. ++++|.+.|.+
T Consensus 77 v~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~ 109 (112)
T 1syr_A 77 ITSMPTFKVYK--NGSSVDTLLGA-NDSALKQLIEK 109 (112)
T ss_dssp CCSSSEEEEEE--TTEEEEEEESC-CHHHHHHHHHT
T ss_pred CCcccEEEEEE--CCcEEEEEeCC-CHHHHHHHHHH
Confidence 99999987774 69998889998 87766665543
No 70
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.25 E-value=3.6e-06 Score=67.13 Aligned_cols=94 Identities=19% Similarity=0.303 Sum_probs=73.5
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.+|++++.. ..+|+++|++.++||..|+.+. +.+.++.+ + ++.|..++.+ . ...++..|++.
T Consensus 22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~------~~~~~~~~-~~~~~~~~vd~~------~--~~~~~~~~~v~ 84 (117)
T 2xc2_A 22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIA------PLFKELSE-KYDAIFVKVDVD------K--LEETARKYNIS 84 (117)
T ss_dssp THHHHHHHH--TTTSCEEEEEECTTCHHHHHHH------HHHHHHHT-TSSSEEEEEETT------T--SHHHHHHTTCC
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHh------HHHHHHHH-HcCcEEEEEECC------c--cHHHHHHcCCC
Confidence 677777764 3689999999999999999995 45666666 5 6888888777 2 25688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
.+|++.++. .|+.+..+.| .+++++.+.|.+.
T Consensus 85 ~~Pt~~~~~--~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 85 AMPTFIAIK--NGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp SSSEEEEEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred ccceEEEEe--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence 999988873 6999888999 5777766666543
No 71
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.24 E-value=4.5e-06 Score=65.39 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=71.6
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
..+|++++.. ..+|.++|++.++||..|+.+.. .+.++.++ .++.|..++.+ . ...++..|++
T Consensus 9 ~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~~vd~~------~--~~~~~~~~~v 72 (107)
T 1gh2_A 9 DPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAP------AFSSMSNKYPQAVFLEVDVH------Q--CQGTAATNNI 72 (107)
T ss_dssp GGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--SHHHHHHTTC
T ss_pred HHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHH------HHHHHHHHCCCcEEEEEECc------c--CHHHHHhcCC
Confidence 4567777654 56899999999999999999853 33443330 26889888887 3 2458899999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
..+|++.++. .|+.+..+.|. .++++.+.|.+.+
T Consensus 73 ~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l 106 (107)
T 1gh2_A 73 SATPTFQFFR--NKVRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp CSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred CcccEEEEEE--CCeEEEEEeCC-CHHHHHHHHHHhc
Confidence 9999999884 69988889995 4555665555543
No 72
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.23 E-value=4.6e-06 Score=66.90 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV 215 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~ 215 (346)
.+.++.+.+.+|.++|++.++||..|+.+...+ ..+.+-.. ++.|..++.+ .. ..++..|++..+|+
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~--~v~~~~vd~~------~~--~~l~~~~~v~~~Pt 86 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHL---TKLIQAYP--DVRFVKCDVD------ES--PDIAKECEVTAMPT 86 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHH---HHHHHHCT--TSEEEEEETT------TC--HHHHHHTTCCSBSE
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC--CCEEEEEECC------CC--HHHHHHCCCCcccE
Confidence 444555566889999999999999999985432 22333333 3788888877 22 46889999999999
Q ss_pred EEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 216 VLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 216 i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
+.++ ..|+.+..+.|.. +++|.+.|
T Consensus 87 ~~~~--~~G~~~~~~~G~~-~~~l~~~l 111 (114)
T 2oe3_A 87 FVLG--KDGQLIGKIIGAN-PTALEKGI 111 (114)
T ss_dssp EEEE--ETTEEEEEEESSC-HHHHHHHH
T ss_pred EEEE--eCCeEEEEEeCCC-HHHHHHHH
Confidence 8876 3699998899976 66555444
No 73
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.22 E-value=3.6e-07 Score=73.97 Aligned_cols=101 Identities=14% Similarity=0.274 Sum_probs=79.6
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
-..+|++++..|+..+|+++|++.++||..|+.+. +.+.++.+ . ++.|..++.+ . ...++..|
T Consensus 21 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~-~~~~v~~~~v~~~------~--~~~~~~~~ 85 (130)
T 1wmj_A 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIA------PVFAEYAK-KFPGAVFLKVDVD------E--LKEVAEKY 85 (130)
T ss_dssp SSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSH------HHHHHHHH-HCTTBCCEECCTT------T--SGGGHHHH
T ss_pred CHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHH------HHHHHHHH-HCCCCEEEEEecc------c--hHHHHHHc
Confidence 35679999999999999999999999999999985 34455554 3 5777777666 2 24688899
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
++..+|++.++ ..|+.+..+.| .+++++.+.|.+.+..
T Consensus 86 ~v~~~Pt~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 123 (130)
T 1wmj_A 86 NVEAMPTFLFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA 123 (130)
T ss_dssp TCCSSCCCCBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred CCCccceEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence 99999998777 46888888888 4777787777777654
No 74
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.21 E-value=6.6e-06 Score=76.00 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=80.3
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
+-..+|++.+ ....+|+++|++..+||..|+.+...+ +.+.+-.. .+++|..++++ .. ..++..|+
T Consensus 12 ~~~~~f~~~~--~~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~~~vd~~------~~--~~~~~~~~ 77 (287)
T 3qou_A 12 INESNLQQVL--EQSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYN-GQFILAKLDCD------AE--QMIAAQFG 77 (287)
T ss_dssp CCTTTHHHHH--TTTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHT-SSSEEEEEETT------TC--HHHHHTTT
T ss_pred CCHHHHHHHH--HhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcC-CCeEEEEEeCc------cC--HHHHHHcC
Confidence 4466788855 345689999999999999999996433 34444455 67999999888 32 47899999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
+..+|++.++. .|+.+..+.|..+.+.+...|...+
T Consensus 78 v~~~Pt~~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 78 LRAIPTVYLFQ--NGQPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp CCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred CCCCCeEEEEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence 99999999994 6999989999888887777776654
No 75
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.21 E-value=5.5e-06 Score=70.46 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=74.7
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT 223 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t 223 (346)
+.+|.+||++.++||..|+.+...+ +.+.+-+. .++.|..++.+ .. ..++..|++..+|++.++. .
T Consensus 62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~-~~v~~~~vd~~------~~--~~l~~~~~i~~~Pt~~~~~--~ 127 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLA-GQVRLAKIDTQ------AH--PAVAGRHRIQGIPAFILFH--K 127 (155)
T ss_dssp TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTCEEEEEETT------TS--THHHHHTTCCSSSEEEEEE--T
T ss_pred hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcc-CCEEEEEEeCC------cc--HHHHHHcCCCcCCEEEEEe--C
Confidence 7789999999999999999996543 34555555 67999999887 22 4688999999999999984 6
Q ss_pred CceEEEEeCCCChHHHHHHHHHHHH
Q 036413 224 GEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 224 ge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
|+.+..+.|..+.++|.+.|.+.+.
T Consensus 128 G~~~~~~~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 128 GRELARAAGARPASELVGFVRGKLG 152 (155)
T ss_dssp TEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred CeEEEEecCCCCHHHHHHHHHHHhc
Confidence 9999899999898888888887764
No 76
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.21 E-value=3.5e-06 Score=68.07 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=71.6
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS 212 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~ 212 (346)
.+|++++ +.+|.++|++.++||..|+.+...+ ..+.+-+...++.|..++.+ . ...++..|++..
T Consensus 24 ~~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d------~--~~~~~~~~~v~~ 88 (121)
T 2j23_A 24 DQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVD------E--QSQIAQEVGIRA 88 (121)
T ss_dssp HHHHHHH----SSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETT------T--CHHHHHHHTCCS
T ss_pred HHHHHHH----cCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECc------C--CHHHHHHcCCCc
Confidence 3455555 7789999999999999999996443 23333333123899998887 3 246888999999
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+|++.++. .|+.+..+.|. +++++.+.|.+.
T Consensus 89 ~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 89 MPTFVFFK--NGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp SSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred ccEEEEEE--CCeEEeeEcCC-CHHHHHHHHHHh
Confidence 99998885 69988889998 887777766654
No 77
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.20 E-value=2.8e-06 Score=76.30 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=81.3
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++ .+.+|.+||++.++||..|+.+...+ +.+.+.++ .++.|..++.+ .. ..++..|++
T Consensus 18 t~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~-~~v~~~~vd~d------~~--~~l~~~~~v 82 (222)
T 3dxb_A 18 TDDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------QN--PGTAPKYGI 82 (222)
T ss_dssp CTTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------TC--TTTGGGGTC
T ss_pred CHHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhc-CCcEEEEEECC------CC--HHHHHHcCC
Confidence 355666654 45789999999999999999996543 45555566 67888888887 22 347889999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
..+|++.++. .|+.+....|..+.++|.+.|.+.+...
T Consensus 83 ~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 83 RGIPTLLLFK--NGEVAATKVGALSKGQLKEFLDANLAGS 120 (222)
T ss_dssp CSBSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred CcCCEEEEEE--CCeEEEEeccccChHHHHHHHHhhcccc
Confidence 9999999996 6999989999999998888888887543
No 78
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.19 E-value=4.2e-06 Score=70.57 Aligned_cols=99 Identities=17% Similarity=0.312 Sum_probs=75.5
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
..+|++++..+ .+|++||++.++||..|+.+.. .+.++.+ -.++.|..++.+ . ...++..|++
T Consensus 20 ~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~~------~--~~~l~~~~~v 83 (153)
T 2wz9_A 20 AGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNE------VMAELAKELPQVSFVKLEAE------G--VPEVSEKYEI 83 (153)
T ss_dssp HHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--SHHHHHHTTC
T ss_pred HHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHH------HHHHHHHHcCCeEEEEEECC------C--CHHHHHHcCC
Confidence 45677666543 4899999999999999999853 3444443 036899998887 3 2468899999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
..+|++.+++ .|+.+..+.|. +++++.+.|.+.+..
T Consensus 84 ~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 84 SSVPTFLFFK--NSQKIDRLDGA-HAPELTKKVQRHASS 119 (153)
T ss_dssp CSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred CCCCEEEEEE--CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 9999999999 69988888994 777777777776644
No 79
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.18 E-value=5.2e-06 Score=68.86 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=74.0
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HH
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CR 202 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~ 202 (346)
+.-.+|++||++.++||..|+.+...+ ..+.+-+.+.++.+..++.+. +++ ..
T Consensus 22 ~~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~ 93 (151)
T 2f9s_A 22 SDLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGE-----SKIAVHNFMKSYGVNFPVVLDTDR 93 (151)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESC-----CHHHHHHHHHHHTCCSCEEEETTS
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCC-----CHHHHHHHHHHcCCCceEEECCch
Confidence 344689999999999999998775432 122232331478888888872 221 24
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|...+..
T Consensus 94 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~ 139 (151)
T 2f9s_A 94 QVLDAYDVSPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPG 139 (151)
T ss_dssp HHHHHTTCCSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred HHHHhcCCCCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhh
Confidence 6778899999999999997 699999999998998888888877654
No 80
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.17 E-value=4e-06 Score=67.39 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=70.1
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCC--------------------h
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDD--------------------S 199 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~--------------------~ 199 (346)
+.-.+|++||++.++||..|+.+. +.+.++.+ + ++.+..++.+. + .
T Consensus 21 ~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~-~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~d 88 (136)
T 1zzo_A 21 ESLLGKPAVLWFWAPWCPTCQGEA------PVVGQVAA-SHPEVTFVGVAGLD-----QVPAMQEFVNKYPVKTFTQLAD 88 (136)
T ss_dssp GGGTTSCEEEEEECTTCHHHHHHH------HHHHHHHH-HCTTSEEEEEECSS-----CHHHHHHHHHHTTCTTSEEEEC
T ss_pred HHhCCCeEEEEEEcCCChhHHHHH------HHHHHHHH-HcCCeEEEEEeCCC-----CHHHHHHHHHHcCCCceEEEEc
Confidence 344689999999999999998874 44455544 2 67777777661 1 1
Q ss_pred HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
....++..|++..+|++.|||+ .|+.+ .+.|..+.+++.+.|.+.+.
T Consensus 89 ~~~~~~~~~~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 89 TDGSVWANFGVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp TTCHHHHHTTCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred CCcHHHHHcCCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 2346778899999999999997 68888 88998898888888877653
No 81
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.16 E-value=9.3e-06 Score=64.92 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=70.0
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--------------------HH
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS--------------------EC 201 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~--------------------eg 201 (346)
+.-.+|++||++.++||..|+.+-..+ ..+.+-.. .++.+..++....+.+++. ..
T Consensus 18 ~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 93 (138)
T 4evm_A 18 SDYKGKKVYLKFWASWCSICLASLPDT---DEIAKEAG-DDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPS 93 (138)
T ss_dssp GGGTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCT-TTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTT
T ss_pred HHhCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhC-CCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcc
Confidence 334689999999999999998875443 23333344 6788888743310111111 12
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
..++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+
T Consensus 94 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 94 GKLLETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp CHHHHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred hHHHHHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence 35778899999999999997 69999999999898887777654
No 82
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.16 E-value=1.1e-05 Score=64.94 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=75.1
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
..|+.++..+..++.+|++||++.++||..|+.+...+ +.+.+-+ .++.|..++.+ .. ..++..|++
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~--~~v~~~~vd~~------~~--~~~~~~~~i 74 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN--KDVTFIKVDVD------KN--GNAADAYGV 74 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC--TTSEEEEEETT------TC--HHHHHHTTC
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC--CCeEEEEEECC------CC--HHHHHhcCC
Confidence 46777777766667899999999999999999986443 2333322 37889998887 32 468899999
Q ss_pred CCCceEEEEeC--CCCceEEEEeCCCChHHHHHHHHHH
Q 036413 211 DSLPVVLVIDP--ITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 211 ~~~P~i~iidp--~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
..+|++.+++. ..|+.+..+.|..+ .++...+.++
T Consensus 75 ~~~Pt~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~ 111 (118)
T 2f51_A 75 SSIPALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKF 111 (118)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHh
Confidence 99999999974 13788888999654 4455555544
No 83
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.14 E-value=4.6e-06 Score=67.30 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=69.6
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCCh-------------------H
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDS-------------------E 200 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~-------------------e 200 (346)
+.-.+|+++|++.++||..|+.+. +.+.++.+ + ++.|+.++.+. +. .
T Consensus 20 ~~~~~k~~lv~f~~~~C~~C~~~~------~~l~~~~~-~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~d~ 87 (136)
T 1lu4_A 20 ASLQGKPAVLWFWTPWCPFCNAEA------PSLSQVAA-ANPAVTFVGIATRA-----DVGAMQSFVSKYNLNFTNLNDA 87 (136)
T ss_dssp GGGTTSCEEEEEECTTCHHHHHHH------HHHHHHHH-HCTTSEEEEEECSS-----CHHHHHHHHHHHTCCSEEEECT
T ss_pred HHhCCCEEEEEEECCcChhHHHHH------HHHHHHHH-HCCCcEEEEEEcCC-----CHHHHHHHHHHcCCCceEEECC
Confidence 344689999999999999998874 44455554 2 67788887761 11 1
Q ss_pred HHHHHhhcCCCCCceEEEEeCCCCceEEEEe---CCCChHHHHHHHHHHH
Q 036413 201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKWC---GMVDPVSLLEDLLSFM 247 (346)
Q Consensus 201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~~---G~~~~~~~i~~L~~fl 247 (346)
...++..|++..+|++.|||+ .|+.+ .+. |..+++++.+.|.+.+
T Consensus 88 ~~~~~~~~~i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 88 DGVIWARYNVPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp TSHHHHHTTCCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred chhHHHhcCCCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 346778899999999999997 68888 888 9889888888777643
No 84
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.14 E-value=5.3e-06 Score=68.49 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=73.0
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
...|++++. ...+|++||++.++||..|+.+. +.+.++.+ + +++|..++.+ . ...++..|++
T Consensus 28 ~~~~~~~l~--~~~~k~vvv~F~a~wC~~C~~~~------p~l~~l~~-~~~v~~~~vd~~------~--~~~l~~~~~v 90 (133)
T 3cxg_A 28 TGSLNQVFS--STQNSSIVIKFGAVWCKPCNKIK------EYFKNQLN-YYYVTLVDIDVD------I--HPKLNDQHNI 90 (133)
T ss_dssp TTHHHHHHT--C-CCSEEEEEEECTTCHHHHHTH------HHHHGGGG-TEECEEEEEETT------T--CHHHHHHTTC
T ss_pred hhHHHHHHH--hcCCCEEEEEEECCCCHHHHHHH------HHHHHHHH-hcCEEEEEEecc------c--hHHHHHhcCC
Confidence 356766664 33489999999999999999983 44555555 3 4688888776 2 3568889999
Q ss_pred CCCceEEEEeCCCCc--eEEEEeCCCChHHHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGE--KMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 211 ~~~P~i~iidp~tge--~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
..+|++.++....|+ .+..+.|. ++++|.+.|.+.+.
T Consensus 91 ~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 91 KALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred CCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 999999999312466 77888897 78888777777654
No 85
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.13 E-value=4.9e-06 Score=67.75 Aligned_cols=93 Identities=9% Similarity=0.080 Sum_probs=69.0
Q ss_pred HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCC-------------------
Q 036413 141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDD------------------- 198 (346)
Q Consensus 141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~------------------- 198 (346)
.+. .+|++||++.++||..|+.+.. .+.++.+ +.++.++.++.+. .+++
T Consensus 30 l~~-~gk~~ll~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~~~~ 100 (145)
T 3erw_A 30 IPN-KGQKTILHFWTSWCPPCKKELP------QFQSFYDAHPSDSVKLVTVNLVN--SEQNQQVVEDFIKANKLTFPIVL 100 (145)
T ss_dssp ESC-TTSEEEEEEECSSCHHHHHHHH------HHHHHHHHCCCSSEEEEEEECGG--GSSCHHHHHHHHHHTTCCSCEEE
T ss_pred HHH-CCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcCCCCEEEEEEEccC--CcCCHHHHHHHHHHcCCceeEEE
Confidence 344 8899999999999999988753 3333333 2578888888761 0001
Q ss_pred hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
.....++..|++..+|++.|||+ .|+.+..+.|..+.++|.+.|
T Consensus 101 d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 101 DSKGELMKEYHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp CSSSHHHHHTTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred cCchhHHHhcCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence 11346788999999999999996 699999999998988776654
No 86
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.13 E-value=2.3e-06 Score=67.63 Aligned_cols=99 Identities=15% Similarity=0.253 Sum_probs=71.0
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGY 207 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~ 207 (346)
+-..+|++++. .+|++||++.++||..|+.+...+ ..+.+-+++ .+++|..++.+ . ...++..
T Consensus 12 l~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~------~--~~~~~~~ 76 (120)
T 1mek_A 12 LRKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDAT------E--ESDLAQQ 76 (120)
T ss_dssp CCTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETT------T--CCSSHHH
T ss_pred echhhHHHHHc----cCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCC------C--CHHHHHH
Confidence 34567887663 579999999999999999985332 122232320 25888888776 2 1367888
Q ss_pred cCCCCCceEEEEeCCCCceE--EEEeCCCChHHHHHHHHH
Q 036413 208 YKLDSLPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~ 245 (346)
|++..+|++.++. .|+.+ ..+.|..+.+.|.+.|.+
T Consensus 77 ~~v~~~Pt~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~ 114 (120)
T 1mek_A 77 YGVRGYPTIKFFR--NGDTASPKEYTAGREADDIVNWLKK 114 (120)
T ss_dssp HTCCSSSEEEEEE--SSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred CCCCcccEEEEEe--CCCcCCcccccCccCHHHHHHHHHh
Confidence 9999999999994 58776 778898888776666554
No 87
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.12 E-value=6.4e-06 Score=65.37 Aligned_cols=96 Identities=9% Similarity=0.111 Sum_probs=71.4
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
-..+| +++ .++|.++|++.++||..|+.+. +.+.++.+ . ++.|..++.+ +...++..|
T Consensus 9 ~~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~------~~l~~~~~-~~~~v~~~~vd~~--------~~~~l~~~~ 68 (110)
T 2l6c_A 9 TEAGM-AHF----EGLSDAIVFFHKNLCPHCKNME------KVLDKFGA-RAPQVAISSVDSE--------ARPELMKEL 68 (110)
T ss_dssp GGCSH-HHH----TTCSEEEEEEECSSCSTHHHHH------HHHHHHHT-TCTTSCEEEEEGG--------GCHHHHHHT
T ss_pred CHHHH-HHH----HcCCCEEEEEECCCCHhHHHHH------HHHHHHHH-HCCCcEEEEEcCc--------CCHHHHHHc
Confidence 34567 544 3568999999999999999984 34455444 3 4677777665 235688899
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
++..+|++.++ ..|+.+.++.|..++++|...|..+..
T Consensus 69 ~v~~~Pt~~~~--~~G~~v~~~~G~~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 69 GFERVPTLVFI--RDGKVAKVFSGIMNPRELQALYASIHH 106 (110)
T ss_dssp TCCSSCEEEEE--ESSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred CCcccCEEEEE--ECCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence 99999999999 369999999999898877776665543
No 88
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.12 E-value=1e-05 Score=67.21 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=75.5
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCC----------------CCChH
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDD----------------DDDSE 200 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~----------------~~~~e 200 (346)
..+.-++|++||++..+||..|..+-. .+.++.+ +.++.+..++.+..+. +...+
T Consensus 18 ~l~~~~gk~vlv~F~a~wC~~C~~~~~------~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (151)
T 3raz_A 18 SLQSLKAPVRIVNLWATWCGPCRKEMP------AMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGAN 91 (151)
T ss_dssp CGGGCCSSEEEEEEECTTCHHHHHHHH------HHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSC
T ss_pred cHHHhCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccc
Confidence 334457899999999999999988743 3344332 2578898888761000 00123
Q ss_pred HHHHHhhcC--CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 201 CRKVCGYYK--LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 201 g~~~~~~y~--~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
...++..|+ +..+|++.|||+ .|+.+..+.|..+++++.+.|.......+
T Consensus 92 ~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~~ 143 (151)
T 3raz_A 92 SRNFMKTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKCR 143 (151)
T ss_dssp HHHHHHTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred hHHHHHHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 455777788 889999999997 69999999999999998888888776544
No 89
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.12 E-value=6.8e-06 Score=69.50 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=74.7
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
+|++++. ...+|++||++..+||..|+.+. +.+.++.+ ..++.|+.++++ . ...++..|++.
T Consensus 13 ~~~~~i~--~~~~k~vlv~F~a~WC~~C~~~~------p~l~~l~~~~~~~~~~~~vd~d------~--~~~l~~~~~v~ 76 (149)
T 3gix_A 13 EVDQAIK--STAEKVLVLRFGRDEDPVCLQLD------DILSKTSSDLSKMAAIYLVDVD------Q--TAVYTQYFDIS 76 (149)
T ss_dssp HHHHHHH--HCCSSEEEEEEECTTSHHHHHHH------HHHHHHHTTTTTTEEEEEEETT------T--CCHHHHHTTCC
T ss_pred HHHHHHH--hcCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHccCceEEEEEECC------c--CHHHHHHcCCC
Confidence 4555543 25789999999999999999985 33444433 156999999887 2 24588999999
Q ss_pred CCceEEEEeCCCCceE---------EEEeC-CCChHHHHHHHHHHHHc
Q 036413 212 SLPVVLVIDPITGEKM---------RKWCG-MVDPVSLLEDLLSFMES 249 (346)
Q Consensus 212 ~~P~i~iidp~tge~l---------~~~~G-~~~~~~~i~~L~~fl~~ 249 (346)
.+|++.+.. .|+.+ ..+.| ..+.++|.+.|...+..
T Consensus 77 ~~Pt~~~~~--~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~ 122 (149)
T 3gix_A 77 YIPSTVFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG 122 (149)
T ss_dssp SSSEEEEEE--TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEE--CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHH
Confidence 999999444 58888 77889 88999998888887643
No 90
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.12 E-value=9.9e-06 Score=62.42 Aligned_cols=95 Identities=15% Similarity=0.293 Sum_probs=71.0
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
.+|++++.. ..+|.++|++.++||..|+.+.. .+.++.++ .++.|..++.+ . ...++..|++.
T Consensus 8 ~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~------~--~~~~~~~~~v~ 71 (104)
T 2vim_A 8 ADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAP------KVEALAKEIPEVEFAKVDVD------Q--NEEAAAKYSVT 71 (104)
T ss_dssp HHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--CHHHHHHTTCC
T ss_pred HHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhH------HHHHHHHHCCCCEEEEEecc------C--CHHHHHHcCCc
Confidence 346666543 37899999999999999999853 34444440 26888888877 3 24688899999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
.+|++.++. .|+.+..+.| .+++++.+.|.++
T Consensus 72 ~~Pt~~~~~--~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 72 AMPTFVFIK--DGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp SSSEEEEEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred cccEEEEEe--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence 999988885 6999888999 5777766666553
No 91
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.12 E-value=8.4e-06 Score=67.58 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=73.6
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--------------------HHH
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS--------------------ECR 202 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~--------------------eg~ 202 (346)
.-.+|++||++.++||..|+.+. +.+.++.++.++.|+.++.+. +. +..
T Consensus 39 ~~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (156)
T 1kng_A 39 AFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKD-----AADNARRFLGRYGNPFGRVGVDANG 107 (156)
T ss_dssp GGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESC-----CHHHHHHHHHHHCCCCSEEEEETTS
T ss_pred HhCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCC-----CHHHHHHHHHHcCCCCceeeeCchh
Confidence 33589999999999999998873 566677662348888877651 21 123
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.++.
T Consensus 108 ~~~~~~~v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 153 (156)
T 1kng_A 108 RASIEWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQMEK 153 (156)
T ss_dssp HHHHHTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred HHHHhcCcCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5677899999999999997 699999999998998888888877653
No 92
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.11 E-value=2.9e-06 Score=73.23 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--------------------
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS-------------------- 199 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~-------------------- 199 (346)
..+.-.+|++||++.++||..|... -+.+.++.+ +++.++.+++++ +.
T Consensus 52 ~l~~~~gk~vll~F~a~~C~~C~~~------~~~l~~l~~-~~v~vv~vs~~d-----~~~~~~~~~~~~~~~~~~~~~d 119 (176)
T 3kh7_A 52 TEADLKGKPALVNVWGTWCPSCRVE------HPELTRLAE-QGVVIYGINYKD-----DNAAAIKWLNELHNPYLLSISD 119 (176)
T ss_dssp EGGGGCSSCEEEEEECTTCHHHHHH------HHHHHHHHH-TTCEEEEEEESC-----CHHHHHHHHHHTTCCCSEEEEE
T ss_pred cHHHhCCCEEEEEEECCcCHHHHHH------HHHHHHHHH-CCCEEEEEeCCC-----CHHHHHHHHHHcCCCCceEEEC
Confidence 3445568999999999999999887 367788888 788888888651 22
Q ss_pred HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
....++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.++..
T Consensus 120 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~l 169 (176)
T 3kh7_A 120 ADGTLGLDLGVYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQL 169 (176)
T ss_dssp TTCHHHHHHTCCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred CcchHHHHcCCCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 1235667788889999999997 6999999999999999999888887653
No 93
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.09 E-value=1.9e-05 Score=64.04 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=70.9
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHH--------hccCcEEEEEeecCCCCCCCChHH
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQT--------IRASNFIFWQVYDDDDDDDDDSEC 201 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~--------i~~~nFVfw~~~~~~~~~~~~~eg 201 (346)
+-..+|++.+. +.+|++||+++++||..|+.+.. .+.++ .+ .++.|..++.+ . .
T Consensus 20 l~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p------~~~~la~~~~~~~~~-~~v~~~~vd~~------~--~ 81 (127)
T 3h79_A 20 LTDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMR------LWDDLSMSQSQKRNH-LTFVAARIDGE------K--Y 81 (127)
T ss_dssp CCTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHHHTSTTT-TTEEEEEEETT------T--C
T ss_pred CChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhH------HHHHHHHHHHhcccC-CCeEEEEEEcc------c--c
Confidence 34556877664 45899999999999999999853 33333 23 57999999887 3 3
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceE--EEEeCCCChHHHHHHHHH
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~ 245 (346)
..++..|++..||++.++.+ |..+ ..+.|..+.+.+++.|.+
T Consensus 82 ~~l~~~~~v~~~Pt~~~~~~--g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 82 PDVIERMRVSGFPTMRYYTR--IDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp HHHHHHTTCCSSSEEEEECS--SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred HhHHHhcCCccCCEEEEEeC--CCCCCceEecCCccHHHHHHHHHh
Confidence 57899999999999999985 3332 467898887766665543
No 94
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=97.37 E-value=4.2e-07 Score=70.16 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=70.3
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI 219 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii 219 (346)
..+.+.+|+++|++.++||..|+.+...+ +.+.+.+. .++.|..++.+ +...++..|++..+|++.++
T Consensus 13 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~--------~~~~~~~~~~v~~~Pt~~~~ 80 (106)
T 2yj7_A 13 QEVLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYE-GKVKVVKVNVD--------ENPNTAAQYGIRSIPTLLLF 80 (106)
Confidence 34457789999999999999999996543 34444455 57788777666 23568889999999999999
Q ss_pred eCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 220 DPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 220 dp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
..|+.+..+.|..+.+++.+.|.+.
T Consensus 81 --~~g~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 81 --KNGQVVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 3688888888987777776666543
No 95
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.08 E-value=3e-06 Score=69.18 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=67.7
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCc--------------cccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEF--------------TSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD 197 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f--------------~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~ 197 (346)
..+|+++. .+.+|.+||++.++||. .|+.+...+ +.+.+-+. .++.|..++.+
T Consensus 10 ~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~---~~l~~~~~-~~~~~~~vd~d------ 76 (123)
T 1oaz_A 10 DDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------ 76 (123)
T ss_dssp STTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHH---TTC--------CEEEEEETT------
T ss_pred hhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHH---HHHHHHhc-CCeEEEEEECC------
Confidence 34565443 57899999999999999 666664321 12333344 57899999888
Q ss_pred ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 198 DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 198 ~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.. ..++..|++..+|++.++ ..|+.+....|..+.+++.+.|.+
T Consensus 77 ~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 77 QN--PGTAPKYGIRGIPTLLLF--KNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp SC--TTTGGGGTCCBSSEEEEE--ESSSEEEEEESCCCHHHHHHHHTT
T ss_pred CC--HHHHHHcCCCccCEEEEE--ECCEEEEEEeCCCCHHHHHHHHHH
Confidence 22 358889999999999999 369999889998888776666543
No 96
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.08 E-value=1.7e-05 Score=66.25 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc-------------
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY------------- 208 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y------------- 208 (346)
+.-.+|++||++.++||..|..+...+ ..+.+-+.+.++.+..++.+. ......+++..+
T Consensus 30 ~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (165)
T 3or5_A 30 ASLKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNE----QLPNVKNYMKTQGIIYPVMMATPEL 102 (165)
T ss_dssp GGGTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSC----CHHHHHHHHHHHTCCSCEEECCHHH
T ss_pred hHcCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCC----CHHHHHHHHHHcCCCCceEecCHHH
Confidence 334689999999999999999885443 223333332569999988772 022333443322
Q ss_pred ----------CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 209 ----------KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 209 ----------~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
++..+|++.|||+ .|+.+..+.|..+++++.+.|...+....
T Consensus 103 ~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 154 (165)
T 3or5_A 103 IRAFNGYIDGGITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAKA 154 (165)
T ss_dssp HHHHHTTSTTCSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC---
T ss_pred HHHHhhhhccCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhhc
Confidence 6889999999996 69999999999999999999999886553
No 97
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.05 E-value=1.9e-05 Score=62.18 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=71.3
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
-..+|++++..+ .+|.+||++.++||..|+.+... +.++.+ -.++.|..++.+ . +...++..|+
T Consensus 11 ~~~~~~~~~~~~--~~~~vlv~f~a~wC~~C~~~~~~------l~~~~~~~~~v~~~~vd~~------~-~~~~~~~~~~ 75 (111)
T 2pu9_C 11 NKDTFWPIVKAA--GDKPVVLDMFTQWCGPSKAMAPK------YEKLAEEYLDVIFLKLDCN------Q-ENKTLAKELG 75 (111)
T ss_dssp CTTTHHHHHTTC--TTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECS------S-TTHHHHHHHC
T ss_pred chHHHHHHHHhc--CCCEEEEEEECCcCHhHHHHCHH------HHHHHHHCCCeEEEEEecC------c-chHHHHHHcC
Confidence 355777777432 57999999999999999998643 344333 024788888776 2 2357889999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
+..+|++ ++++ .|+.+..+.|. +++++.+.|.+++
T Consensus 76 v~~~Pt~-~~~~-~G~~~~~~~G~-~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 76 IRVVPTF-KILK-ENSVVGEVTGA-KYDKLLEAIQAAR 110 (111)
T ss_dssp CSBSSEE-EEES-SSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred CCeeeEE-EEEe-CCcEEEEEcCC-CHHHHHHHHHHhh
Confidence 9999995 4553 69988888997 4777776666553
No 98
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.04 E-value=2.2e-05 Score=65.44 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=72.7
Q ss_pred HHhhhcCcEEEEEecCCCCccccc-cccccCCCHHHHHHh---ccCcEEEEEeecCCCCC--CCChH-------------
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHT-LNRDTWADEAVSQTI---RASNFIFWQVYDDDDDD--DDDSE------------- 200 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~-lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~--~~~~e------------- 200 (346)
..+.-.+|++||++..+||..|.. +- +.+.++. .+.++.++.++.+. +. +++.+
T Consensus 24 ~l~~~~gk~vlv~F~a~~C~~C~~e~~------~~l~~l~~~~~~~~v~~v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
T 3lor_A 24 SNEDLRGKVVVVEVFQMLCPGCVNHGV------PQAQKIHRMIDESQVQVIGLHSVF-EHHDVMTPEALKVFIDEFGIKF 96 (160)
T ss_dssp CHHHHTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCC-SCGGGSCHHHHHHHHHHTTCCS
T ss_pred CHHHhCCCEEEEEEEcCCCcchhhhhh------HHHHHHHHHhCcCCcEEEEEeccc-cccccCCHHHHHHHHHHcCCCC
Confidence 334446899999999999999976 32 3333333 22468888887631 00 00111
Q ss_pred ------------HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 201 ------------CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 201 ------------g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
...++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus 97 ~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 97 PVAVDMPREGQRIPSTMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp CEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred cEEECCccccchhhhHHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 112778899999999999997 699999999999999999999888865
No 99
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.03 E-value=9.9e-06 Score=66.26 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=71.7
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHH-----------------
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRK----------------- 203 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~----------------- 203 (346)
+.-.+|++||++.++||..|+.+...+- .+.+-+.+.++.+..++.+. +.+ ..+
T Consensus 27 ~~~~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~~d~~ 98 (148)
T 3hcz_A 27 YDVQAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIER-----KDEEWLKFIRSKKIGGWLNVRDSK 98 (148)
T ss_dssp GGCCCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCS-----SSHHHHHHHHHHTCTTSEEEECTT
T ss_pred HHcCCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecC-----CHHHHHHHHHHcCCCCceEEeccc
Confidence 3346899999999999999988753221 12222332469999988872 222 111
Q ss_pred ----HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 204 ----VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 204 ----~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
++..|++..+|++.|||+ .|+.+..+.|..+.+++++.|.+.+.
T Consensus 99 ~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 99 NHTDFKITYDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK 146 (148)
T ss_dssp CCCCHHHHHCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred cchhHHHhcCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence 778899999999999997 69999888888788888888877654
No 100
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.03 E-value=1.3e-05 Score=65.53 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=68.7
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHh-ccCcEEEEEeecCCCCCCCChH----------------------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI-RASNFIFWQVYDDDDDDDDDSE---------------------- 200 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i-~~~nFVfw~~~~~~~~~~~~~e---------------------- 200 (346)
-.+|++||++.++||..|+.+...+ ..+.+-+ .+.++.++.++.+ ...
T Consensus 31 ~~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d------~~~~~~~~~~~~~~~~~~~~~d~~~ 101 (148)
T 3fkf_A 31 FRNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLD------IDREAWETAIKKDTLSWDQVCDFTG 101 (148)
T ss_dssp TTTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECC------SCHHHHHHHHHHTTCCSEEECCSCG
T ss_pred cCCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECC------CCHHHHHHHHHHcCCCceEEEccCC
Confidence 3789999999999999999885433 2233333 3145999999888 433
Q ss_pred -HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 201 -CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 201 -g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
...++..|++..+|++.|||+ .|+.+..+. +.+++.+.|.+.+.
T Consensus 102 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 102 LSSETAKQYAILTLPTNILLSP-TGKILARDI---QGEALTGKLKELLK 146 (148)
T ss_dssp GGCHHHHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHC-
T ss_pred cchHHHHhcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHHHHHc
Confidence 457889999999999999997 688776654 67778777777653
No 101
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.01 E-value=1.9e-05 Score=63.09 Aligned_cols=89 Identities=8% Similarity=0.075 Sum_probs=62.8
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID 220 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid 220 (346)
.+.+|.++|++.++||..|+.+. +.+.++.++ ..+++.-++.. .+..+...++..|++..+|++.++.
T Consensus 26 ~~~~~~~~v~f~a~wC~~C~~~~------p~l~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~i~~~Pt~~~~~ 95 (118)
T 1zma_A 26 LDKKETATFFIGRKTCPYCRKFA------GTLSGVVAETKAHIYFINSEEP----SQLNDLQAFRSRYGIPTVPGFVHIT 95 (118)
T ss_dssp HHTTCCEEEEEECTTCHHHHHHH------HHHHHHHHHHCCCCEEEETTCG----GGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred HhCCCeEEEEEECCCCccHHHHH------HHHHHHHHhcCCeEEEEECCCc----CcHHHHHHHHHHcCCCCCCeEEEEE
Confidence 34678999999999999999985 334444430 34444433221 0023456788999999999999996
Q ss_pred CCCCceEEEEeCCCChHHHHHHH
Q 036413 221 PITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 221 p~tge~l~~~~G~~~~~~~i~~L 243 (346)
.|+.+.+..|..++++|.+.|
T Consensus 96 --~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 96 --DGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp --TTEEEEECCTTCCHHHHHHHH
T ss_pred --CCEEEEEecCCCCHHHHHHHh
Confidence 688888889988887665544
No 102
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.00 E-value=6.5e-06 Score=69.63 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=74.2
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC----------------ChHHHHHHhh
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD----------------DSECRKVCGY 207 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~----------------~~eg~~~~~~ 207 (346)
..+|++||++.++||..|+.+. +.+.++.+ +++.++.++.+. +.+. ......++..
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~-~~v~vv~v~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 120 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSA-QGIRVVGMNYKD-DRQKAISWLKELGNPYALSLFDGDGMLGLD 120 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHH------HHHHHHHH-TTCCEEEEEESC-CHHHHHHHHHHHCCCCSEEEEETTCHHHHH
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHH-CCCEEEEEECCC-ChHHHHHHHHHcCCCCceeeECcchHHHHH
Confidence 4689999999999999998874 56777777 688888887551 0000 0112356778
Q ss_pred cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
|++..+|++.|||+ .|+.+..+.|..+++.+.+.|.+.++.
T Consensus 121 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 161 (168)
T 2b1k_A 121 LGVYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEK 161 (168)
T ss_dssp HTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred cCccccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 89999999999996 699998999999999888888877754
No 103
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.99 E-value=1.6e-05 Score=65.83 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=73.8
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC---------------ChHHHHHHhhc
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD---------------DSECRKVCGYY 208 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~---------------~~eg~~~~~~y 208 (346)
-.+|++||++.++||..|+.+...+ ..+.+-+.+.++.++.++.+.+..+. ......++..|
T Consensus 26 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (153)
T 2l5o_A 26 LQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAF 102 (153)
T ss_dssp HTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHH
T ss_pred hCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHc
Confidence 3689999999999999998875432 12222233246888877643100000 01134577889
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
++..+|++.|||+ .|+.+..+.|..+++++.+.|...+....
T Consensus 103 ~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~~ 144 (153)
T 2l5o_A 103 GTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNSD 144 (153)
T ss_dssp TCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred CCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999997 69988889999999999999999887653
No 104
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=97.98 E-value=4.4e-05 Score=62.98 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=71.6
Q ss_pred HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-H----------------
Q 036413 139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-C---------------- 201 (346)
Q Consensus 139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g---------------- 201 (346)
...+.-.+|++||++.++||..|..+...+ ..+.+-+.+.++.+..++.+. ..+ .
T Consensus 21 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~d 92 (152)
T 3gl3_A 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDA-----KTGDAMKFLAQVPAEFTVAFD 92 (152)
T ss_dssp EEGGGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCS-----SHHHHHHHHHHSCCCSEEEEC
T ss_pred EeHHHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCC-----CHHHHHHHHHHcCCCCceeEC
Confidence 344555789999999999999998875443 223333332568888888772 221 1
Q ss_pred --HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCC--hHHHHHHHHHHHHcC
Q 036413 202 --RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVD--PVSLLEDLLSFMESG 250 (346)
Q Consensus 202 --~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~--~~~~i~~L~~fl~~~ 250 (346)
..++..|++..+|++.|||+ .|+.+..+.|... .+++.+.|.+.+...
T Consensus 93 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 93 PKGQTPRLYGVKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGN 144 (152)
T ss_dssp TTCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred CcchhHHHcCCCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence 15678899999999999997 6999999999654 356666666655443
No 105
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=97.98 E-value=1.5e-05 Score=65.70 Aligned_cols=106 Identities=10% Similarity=-0.006 Sum_probs=75.0
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCC-CChHHHHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDD-DDSECRKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~-~~~eg~~~~~~y~~ 210 (346)
..+|++++.. +++|++.++||..|+.+. +.+.++.++-++.|..++.+..... ...+...++..|++
T Consensus 23 ~~~~~~~~~~------~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v 90 (135)
T 3emx_A 23 PEEFRQLLQG------DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGV 90 (135)
T ss_dssp HHHHHHHHTS------SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCC------cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence 4456655532 999999999999999984 6667777622477777777510000 00567788999999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
..+|++++++ .|+.+..+.|..+.+.+...+.+.++...
T Consensus 91 ~~~Pt~~~~~--~G~~v~~~~G~~~~~~~~~~i~~~~~~~~ 129 (135)
T 3emx_A 91 EGTPTLVFYK--EGRIVDKLVGATPWSLKVEKAREIYGGEG 129 (135)
T ss_dssp CSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHC----
T ss_pred ceeCeEEEEc--CCEEEEEEeCCCCHHHHHHHHHHHhCCCc
Confidence 9999999888 69999999998888777777776665543
No 106
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=97.97 E-value=3.5e-05 Score=69.81 Aligned_cols=117 Identities=16% Similarity=0.226 Sum_probs=85.4
Q ss_pred HhhcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCC
Q 036413 120 ASLYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDD 194 (346)
Q Consensus 120 ~~lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~ 194 (346)
+.||.+..++ +-..+|++.+ .+.+|.++|++.++||..|+.+...+ +.+.+-+. . ++.|..++.+
T Consensus 5 ~~l~~~~~~v~~l~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~-~~~~~v~~~~vd~~--- 74 (244)
T 3q6o_A 5 SALYSPSDPLTLLQADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVK-AWRPALYLAALDCA--- 74 (244)
T ss_dssp -CCSCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTG-GGTTTEEEEEEETT---
T ss_pred cCCCCCCCCceeCChhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHH-hccCcEEEEEEeCC---
Confidence 3456543333 3456677665 34569999999999999999995322 33444444 4 7999999997
Q ss_pred CCCChHHHHHHhhcCCCCCceEEEEeCC--C--CceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 195 DDDDSECRKVCGYYKLDSLPVVLVIDPI--T--GEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 195 ~~~~~eg~~~~~~y~~~~~P~i~iidp~--t--ge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
..+...++..|++..+|++.++++- . |..+ ...| .+++.+.+.|.+++....
T Consensus 75 ---~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 75 ---EETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp ---STTTHHHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred ---chhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 6667889999999999999999962 1 2233 4566 589999999999998765
No 107
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=97.96 E-value=3.2e-05 Score=62.03 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=71.9
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
+-..+|.+.+.. ..+|.++|++.++||..|+.+... +.++.++ .++.|..++.+ . +...++..|
T Consensus 23 l~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~------~-~~~~~~~~~ 87 (124)
T 1faa_A 23 VNKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCN------Q-ENKTLAKEL 87 (124)
T ss_dssp ECTTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECS------S-TTHHHHHHH
T ss_pred ecchhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecC------c-chHHHHHHc
Confidence 345678887764 468999999999999999998643 3444330 24788888776 2 346788999
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
++..+|++.+.. .|+.+..+.|.. ++++.+.|.+.
T Consensus 88 ~v~~~Pt~~~~~--~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 88 GIRVVPTFKILK--ENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp CCSSSSEEEEEE--TTEEEEEEESSC-HHHHHHHHHHH
T ss_pred CCCeeeEEEEEe--CCcEEEEEcCCC-HHHHHHHHHHh
Confidence 999999966653 699888889965 77666666554
No 108
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=97.96 E-value=3.9e-05 Score=65.88 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=70.5
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcE------EEEEeecCCCCCCCChHHHHHHhhc--------
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNF------IFWQVYDDDDDDDDDSECRKVCGYY-------- 208 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nF------Vfw~~~~~~~~~~~~~eg~~~~~~y-------- 208 (346)
.-++|++||++..+||..|+.+...+ ..+.+-+++.++ .|+.++.+. +......+++..|
T Consensus 56 ~~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~---~~~~~~~~~~~~~~~~~~~~~ 129 (183)
T 3lwa_A 56 DFENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRD---YSRDIAQDFVTDNGLDYPSIY 129 (183)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSC---CCHHHHHHHHHHTTCCSCEEE
T ss_pred HhCCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCC---CCHHHHHHHHHHcCCCccEEE
Confidence 34689999999999999998775433 122222331447 888888871 0123344554433
Q ss_pred -------------CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 209 -------------KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 209 -------------~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+.+
T Consensus 130 d~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~ 182 (183)
T 3lwa_A 130 DPPFMTAASLGGVPASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVDE 182 (183)
T ss_dssp CTTCGGGGGTTTCCTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred CCcchHHHHhccCCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence 4678999999997 699999999999999999999887753
No 109
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.94 E-value=1.5e-05 Score=65.91 Aligned_cols=84 Identities=15% Similarity=0.307 Sum_probs=63.0
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
-..+|.+++..+ ..+|++||++.++||..|+.|. +.+.++.++ .++.|..++.+ .. ...|+
T Consensus 16 ~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~~------~~-----~~~~~ 77 (135)
T 2dbc_A 16 SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVN------QHLSVLARKFPETKFVKAIVN------SC-----IEHYH 77 (135)
T ss_dssp CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCSSEEEEEECCS------SS-----CSSCC
T ss_pred CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHH------HHHHHHHHHCCCcEEEEEEhh------cC-----cccCC
Confidence 344566666554 3468999999999999999995 444555440 25788888887 22 16899
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCC
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMV 234 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~ 234 (346)
+..+|++.++. .|+.+.++.|..
T Consensus 78 i~~~Pt~~~~~--~G~~v~~~~G~~ 100 (135)
T 2dbc_A 78 DNCLPTIFVYK--NGQIEGKFIGII 100 (135)
T ss_dssp SSCCSEEEEES--SSSCSEEEESTT
T ss_pred CCCCCEEEEEE--CCEEEEEEEeEE
Confidence 99999999996 699998888865
No 110
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=97.92 E-value=6.6e-05 Score=62.35 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=69.0
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH----------------------H
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------C 201 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------g 201 (346)
-.+|++||++.++||..|..+...+ ..+.+-+.+.++.++.++.+. +.+ .
T Consensus 27 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~~~ 98 (152)
T 2lrn_A 27 FKGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDR-----REEDWKKAIEEDKSYWNQVLLQKDDV 98 (152)
T ss_dssp GTTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCS-----CHHHHHHHHHHHTCCSEEEEECHHHH
T ss_pred cCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccC-----CHHHHHHHHHHhCCCCeEEecccchh
Confidence 3689999999999999998874332 122332332569999998882 222 4
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
..++..|++..+|++.|||+ .|+.+..+ ++++++.+.|.+.+...
T Consensus 99 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~l~~~~ 143 (152)
T 2lrn_A 99 KDVLESYCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVEKFVNGA 143 (152)
T ss_dssp HHHHHHTTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHHHHHTSS
T ss_pred HHHHHHhCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHHHHHhhc
Confidence 67889999999999999997 68887765 35667777777776554
No 111
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=97.92 E-value=4.2e-05 Score=64.05 Aligned_cols=100 Identities=8% Similarity=0.118 Sum_probs=73.5
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
+|++++.. ..+|++||++.++||..|+.+...+ +.+.+-.. .++.|..+++++ . ..++..|++..+
T Consensus 13 ~~~~~v~~--~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~~v~~~~vd~d~------~--~~~~~~~~i~~~ 78 (142)
T 1qgv_A 13 QVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVK-NFAVIYLVDITE------V--PDFNKMYELYDP 78 (142)
T ss_dssp HHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHT-TTEEEEEEETTT------C--CTTTTSSCSCSS
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhC-CCeEEEEEcccc------C--HHHHHHcCCCCC
Confidence 34444432 2589999999999999999996443 23444445 679999998882 2 347889999999
Q ss_pred ceEEEEeCCCCceEE---------EEeCCCC-hHHHHHHHHHHHHc
Q 036413 214 PVVLVIDPITGEKMR---------KWCGMVD-PVSLLEDLLSFMES 249 (346)
Q Consensus 214 P~i~iidp~tge~l~---------~~~G~~~-~~~~i~~L~~fl~~ 249 (346)
|++.++. .|+.+. .+.|.++ .++|++.|...+..
T Consensus 79 Pt~~~~~--~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~ 122 (142)
T 1qgv_A 79 CTVMFFF--RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG 122 (142)
T ss_dssp CEEEEEE--TTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred CEEEEEE--CCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence 9999996 588775 3556664 88888888887764
No 112
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=2.2e-05 Score=64.53 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=69.2
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++ ++.++|++||++.++||..|+.+...+ ..+.+-.+..++.|..++.+ . ...++..|++
T Consensus 13 ~~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~------~--~~~~~~~~~v 79 (137)
T 2dj0_A 13 NDKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVG------R--YTDVSTRYKV 79 (137)
T ss_dssp CTTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTT------T--CHHHHHHTTC
T ss_pred cHhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCc------c--CHHHHHHccC
Confidence 356788887 455578999999999999999996433 23333344138999998877 2 2458889999
Q ss_pred C------CCceEEEEeCCCCceEEEEeCCCChHH
Q 036413 211 D------SLPVVLVIDPITGEKMRKWCGMVDPVS 238 (346)
Q Consensus 211 ~------~~P~i~iidp~tge~l~~~~G~~~~~~ 238 (346)
. .+|++.++. .|+.+....|..+.+.
T Consensus 80 ~~~~~~~~~Pt~~~~~--~G~~~~~~~G~~~~~~ 111 (137)
T 2dj0_A 80 STSPLTKQLPTLILFQ--GGKEAMRRPQIDKKGR 111 (137)
T ss_dssp CCCSSSSCSSEEEEES--SSSEEEEESCBCSSSC
T ss_pred cccCCcCCCCEEEEEE--CCEEEEEecCcCchHH
Confidence 8 999999994 6998888888765543
No 113
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=97.90 E-value=2.7e-05 Score=64.79 Aligned_cols=103 Identities=10% Similarity=0.085 Sum_probs=73.6
Q ss_pred HHhhhcCcEEEEEecCCCCcccccc-ccccCCCHHHHHHhc---cCcEEEEEeecCCCCC-CCC----------------
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTL-NRDTWADEAVSQTIR---ASNFIFWQVYDDDDDD-DDD---------------- 198 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~l-nRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~-~~~---------------- 198 (346)
..+.-.+|++||++..+||..|... - +.+.++.+ +.++.+..++.+.... .++
T Consensus 22 ~l~~~~gk~vlv~f~a~wC~~C~~~~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (158)
T 3eyt_A 22 TLADLRGKVIVIEAFQMLCPGCVMHGI------PLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFP 95 (158)
T ss_dssp CTGGGTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSC
T ss_pred CHHHhCCCEEEEEEECCcCcchhhhhh------HHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCce
Confidence 3444468999999999999999873 2 33333332 2578888887531000 001
Q ss_pred ----hHHH----HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 199 ----SECR----KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 199 ----~eg~----~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.++. .++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+..
T Consensus 96 ~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 96 VGVDQPGDGAMPRTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE 153 (158)
T ss_dssp EEEECCCSSSSCHHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred EEEcCccchhhHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 1111 5788899999999999997 699999999999999999999888864
No 114
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=97.88 E-value=3.7e-05 Score=66.61 Aligned_cols=99 Identities=8% Similarity=0.094 Sum_probs=77.1
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-+|++++.. +.+|+++|++..+||.+|.++. |.+.++-. ++..+|+.+|+++ . ..++..|.+
T Consensus 30 ~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~------PvleelA~e~~~~v~f~kVDVDe-----~---~e~a~~y~V 93 (160)
T 2av4_A 30 WAVDQAIVN--EDERLVCIRFGHDYDPDCMKMD------ELLYKVADDIKNFCVIYLVDITE-----V---PDFNTMYEL 93 (160)
T ss_dssp HHHHHHHHH--CSSSEEEEEEECTTSHHHHHHH------HHHHHHHHHHTTTEEEEEEETTT-----C---CTTTTTTTC
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCCcEEEEEECCC-----C---HHHHHHcCC
Confidence 457776632 5789999999999999999993 55555444 1468999999993 3 458999999
Q ss_pred CCCceEEEEeCCCCceE--E-------EEeCCCC-hHHHHHHHHHHHHc
Q 036413 211 DSLPVVLVIDPITGEKM--R-------KWCGMVD-PVSLLEDLLSFMES 249 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l--~-------~~~G~~~-~~~~i~~L~~fl~~ 249 (346)
.+.|++.+.- .|+.+ . ++.|..+ .++|++.|..++..
T Consensus 94 ~siPT~~fFk--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~ 140 (160)
T 2av4_A 94 YDPVSVMFFY--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG 140 (160)
T ss_dssp CSSEEEEEEE--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEE--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence 9999998886 48877 4 6789876 88898888888744
No 115
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=97.86 E-value=4.5e-05 Score=63.07 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=70.9
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-hHH-------------------
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-SEC------------------- 201 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-~eg------------------- 201 (346)
+.-.+|++||++.++||..|+.+-..+ ..+.+-+.+.++.++.++.+. . .+.
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~~d~~ 95 (154)
T 3kcm_A 24 SDLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDE-----GGKVAVEEFFRKTGFTLPVLLDAD 95 (154)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCT-----THHHHHHHHHHHHCCCCCEEECTT
T ss_pred hhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCC-----cchHHHHHHHHHcCCCeeEEecCc
Confidence 444789999999999999999875443 233333332578888888882 1 221
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHHHHHcC
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLSFMESG 250 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~fl~~~ 250 (346)
..++..|++..+|++.|||+ .|+.+..+.|.. +.+++.+.|.+.....
T Consensus 96 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~ 145 (154)
T 3kcm_A 96 KRVGKLYGTTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELSKA 145 (154)
T ss_dssp CHHHHHHTCCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred hHHHHHhCCCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence 33778899999999999996 699999999965 5667777776655444
No 116
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=97.86 E-value=0.00016 Score=61.05 Aligned_cols=112 Identities=12% Similarity=0.149 Sum_probs=83.7
Q ss_pred HHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCC--ccccccccccCCCHHHHHHhc--cCcEEEEEeecCC
Q 036413 117 NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKE--FTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDD 192 (346)
Q Consensus 117 ~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~--f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~ 192 (346)
++|....+-| .+-..+|++.+. +.++.+||++..+|| .+|+++ .+-+-++.+ +..+.|+.++++
T Consensus 9 ~rl~~~~g~~--~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~i------aPvleela~e~~~~v~~~KVdvD- 76 (137)
T 2qsi_A 9 RAAARPNAPT--LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADL------AVVLPELINAFPGRLVAAEVAAE- 76 (137)
T ss_dssp --------CE--EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHH------HHHHHHHHHTSTTTEEEEEECGG-
T ss_pred HHHHHhcCCc--ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhH------HhHHHHHHHHccCCcEEEEEECC-
Confidence 3455544443 346788998773 344699999999999 999998 355555555 146889888777
Q ss_pred CCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 193 DDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 193 ~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
+...++..|++.+.|++++.- .|+.+.++.|..+.+++.+.|.+.+..
T Consensus 77 -------e~~~la~~ygV~siPTlilFk--dG~~v~~~vG~~~k~~l~~~l~~~l~~ 124 (137)
T 2qsi_A 77 -------AERGLMARFGVAVCPSLAVVQ--PERTLGVIAKIQDWSSYLAQIGAMLAE 124 (137)
T ss_dssp -------GHHHHHHHHTCCSSSEEEEEE--CCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHcCCccCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999997 699999999999988888888888743
No 117
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.85 E-value=8.4e-05 Score=62.03 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=71.7
Q ss_pred cCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhcc----CcEEEEEeecCCCCCCCC---------------------
Q 036413 145 ENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRA----SNFIFWQVYDDDDDDDDD--------------------- 198 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~----~nFVfw~~~~~~~~~~~~--------------------- 198 (346)
.+||+||++-.+||.. |...-..+ ..+.+-+++ .++.++.++++. ..++
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~--~~d~~~~~~~~~~~~~~~~~~l~~~ 96 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDP--ERDTKEAIANYVKEFSPKLVGLTGT 96 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCT--TTCCHHHHHHHHHTTCSSCEEEECC
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCC--CCCCHHHHHHHHHHcCCCeEEEeCC
Confidence 5899999999999998 97653221 122233331 277777777761 1111
Q ss_pred -hHHHHHHhhcCCCCCc---------------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 199 -SECRKVCGYYKLDSLP---------------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 199 -~eg~~~~~~y~~~~~P---------------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
.....+++.|++...| ++.|||+ .|+.+..+.|..+++++.+.|.+.+..+
T Consensus 97 ~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 97 REEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp HHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 2233577889988888 8999997 6999999999889999999999888654
No 118
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=97.84 E-value=1.6e-05 Score=66.51 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=67.1
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCC-------------------
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDD------------------- 197 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~------------------- 197 (346)
..+...+|++||++.++||..|+.+. +.+.++.+ ..++.++.++.+....++
T Consensus 32 ~~~~~~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (164)
T 2h30_A 32 SVYLKKDKPTLIKFWASWCPLCLSEL------GQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPV 105 (164)
T ss_dssp GGGCCTTSCEEEEECCTTCHHHHHHH------HHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCE
T ss_pred eHHHhCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceE
Confidence 34556789999999999999998764 33333332 123344443332100000
Q ss_pred -ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 198 -DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 198 -~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
..+...++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+.
T Consensus 106 ~~d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 106 VTDNGGTIAQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNA 156 (164)
T ss_dssp EECTTCHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred EEcCchHHHHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 111246778899999999999996 69999999998888877776665543
No 119
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.80 E-value=0.00011 Score=63.00 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=71.5
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC-----------
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD----------- 211 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~----------- 211 (346)
.-.+||+||++..+||..|......+ +....++=+ .++.++.++.+. +.......++..|++.
T Consensus 57 ~~~gk~vll~F~a~~C~~C~~~~~~l--~~l~~~~~~-~~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~~~~~d~~~~ 130 (186)
T 1jfu_A 57 DFRGKTLLVNLWATWCVPCRKEMPAL--DELQGKLSG-PNFEVVAINIDT---RDPEKPKTFLKEANLTRLGYFNDQKAK 130 (186)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHHCB-TTEEEEEEECCC---SCTTHHHHHHHHTTCCTTCCEECTTCH
T ss_pred HcCCCEEEEEEEeCCCHhHHHHHHHH--HHHHHHhcc-CCcEEEEEECCC---CCHHHHHHHHHHcCCCCCceEECCcch
Confidence 33689999999999999998775443 122222323 688888888872 1123456677777664
Q ss_pred ------------CCceEEEEeCCCCceEEEEeCCCC--hHHHHHHHHHHHHc
Q 036413 212 ------------SLPVVLVIDPITGEKMRKWCGMVD--PVSLLEDLLSFMES 249 (346)
Q Consensus 212 ------------~~P~i~iidp~tge~l~~~~G~~~--~~~~i~~L~~fl~~ 249 (346)
.+|++.|||+ .|+.+..+.|..+ .+++.+.|...+..
T Consensus 131 ~~~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 131 VFQDLKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAATGK 181 (186)
T ss_dssp HHHHHHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred HHHHhccccccCCCCEEEEECC-CCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence 7999999997 6999999999754 77888888877653
No 120
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=97.79 E-value=0.0001 Score=75.01 Aligned_cols=119 Identities=12% Similarity=0.106 Sum_probs=90.6
Q ss_pred HhhcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCC
Q 036413 120 ASLYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDD 194 (346)
Q Consensus 120 ~~lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~ 194 (346)
+.+|.+...+ +-..+|++++ .+.+|.+||++.++||..|+.+...+ +.+.+-+. . ++.|..++.+
T Consensus 5 ~~Ly~~~~~V~~Lt~~~f~~~v---~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~-~~~~~v~~~~VD~d--- 74 (519)
T 3t58_A 5 SVLYSSSDPLTLLDADSVRPTV---LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVK-DWRPALNLAVLDCA--- 74 (519)
T ss_dssp CCSCCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHG-GGTTTEEEEEEETT---
T ss_pred cccCCCCCCcEECChHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhh-CcCCcEEEEEEECC---
Confidence 3456554443 3455677665 34579999999999999999995433 44455555 4 7999999998
Q ss_pred CCCChHHHHHHhhcCCCCCceEEEEeCC--CCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 195 DDDDSECRKVCGYYKLDSLPVVLVIDPI--TGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 195 ~~~~~eg~~~~~~y~~~~~P~i~iidp~--tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
..+...++..|++..+|++.++++- .|+.+....|..+++.+.+.|.+++....
T Consensus 75 ---~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 75 ---EETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp ---SGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred ---ccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 6677899999999999999999961 35555556677899999999999997755
No 121
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=97.79 E-value=2.5e-05 Score=62.15 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=64.7
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-----cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-----NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV 218 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-----nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i 218 (346)
..+|.+||++.++||..|+.+...+ ..+.+-+. . ++.|..++.+ ..+ ++. ++..+|++.+
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~~~v~~~~vd~~------~~~---~~~--~v~~~Pt~~~ 87 (121)
T 2djj_A 23 DDTKDVLIEFYAPWCGHCKALAPKY---EELGALYA-KSEFKDRVVIAKVDAT------AND---VPD--EIQGFPTIKL 87 (121)
T ss_dssp CTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHT-TSSCTTSSEEEEEETT------TSC---CSS--CCSSSSEEEE
T ss_pred cCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHh-hcccCCceEEEEEECc------ccc---ccc--ccCcCCeEEE
Confidence 5689999999999999999996543 34555555 4 7999999888 322 344 8899999999
Q ss_pred EeCCCCce-EEEEeCCCChHHHHHHHHHH
Q 036413 219 IDPITGEK-MRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 219 idp~tge~-l~~~~G~~~~~~~i~~L~~f 246 (346)
+++ .|+. +..+.|..+.++|.+.|.+.
T Consensus 88 ~~~-~~~~~~~~~~G~~~~~~l~~~i~~~ 115 (121)
T 2djj_A 88 YPA-GAKGQPVTYSGSRTVEDLIKFIAEN 115 (121)
T ss_dssp ECS-SCTTSCCCCCCCSCHHHHHHHHHHT
T ss_pred EeC-cCCCCceEecCCCCHHHHHHHHHhc
Confidence 986 3442 56678988877666655543
No 122
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=97.79 E-value=5.8e-05 Score=63.20 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC------------ChHHHHHHhhcC
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD------------DSECRKVCGYYK 209 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~------------~~eg~~~~~~y~ 209 (346)
+.-++|++||++.++||..|..+...+ .+...++=+ .++.|..++.+. +-.+ ......++..|+
T Consensus 37 ~~~~gk~vll~F~~~~C~~C~~~~~~l--~~~~~~~~~-~~~~~v~v~~d~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (158)
T 3hdc_A 37 AQYRGKIVLVNFWASWCPYCRDEMPSM--DRLVKSFPK-GDLVVLAVNVEK-RFPEKYRRAPVSFNFLSDATGQVQQRYG 112 (158)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHSST-TSEEEEEEECSS-SCCGGGGGCCCSCEEEECTTSHHHHHTT
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHHH--HHHHHHccc-CCeEEEEEeCCH-HHHHHHHHcCCCceEEECchHHHHHHhC
Confidence 334689999999999999998775433 122222323 689999998871 0000 011346889999
Q ss_pred CCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLL 244 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~ 244 (346)
+..+|++.|||+ .|+.+..+.|.. +..++++.+.
T Consensus 113 v~~~P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~ 148 (158)
T 3hdc_A 113 ANRLPDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLK 148 (158)
T ss_dssp CCSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHH
T ss_pred CCCcceEEEEcC-CCCEEEEEeCCCccchHHHHHHHH
Confidence 999999999997 699999999965 4455555543
No 123
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=97.77 E-value=6.3e-05 Score=70.93 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=76.7
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++++ ++.+|++||++.++||..|+.+...+ +.+.+.+. .++.+..++.+ ..+...++..|++.
T Consensus 24 ~~~f~~~i---~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~-~~~~~~~v~~d------~~~~~~l~~~~~I~ 90 (298)
T 3ed3_A 24 PKSFDKAI---HNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLD-GVVQVAAVNCD------LNKNKALCAKYDVN 90 (298)
T ss_dssp HHHHHHHH---TSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------STTTHHHHHHTTCC
T ss_pred HHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcc-CCcEEEEEEcc------CccCHHHHHhCCCC
Confidence 44577766 35689999999999999999996533 45555666 67888888888 66678899999999
Q ss_pred CCceEEEEeCCCCc-----------------eEEEEeCCCChHHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGE-----------------KMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 212 ~~P~i~iidp~tge-----------------~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.+|++.++.+ |+ ....+.|..+.+.+++-|.+.+
T Consensus 91 ~~Pt~~~~~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~ 141 (298)
T 3ed3_A 91 GFPTLMVFRP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141 (298)
T ss_dssp BSSEEEEEEC--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred ccceEEEEEC--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence 9999999996 43 3556788888776665554443
No 124
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=4.8e-05 Score=61.26 Aligned_cols=97 Identities=11% Similarity=0.183 Sum_probs=69.4
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++. ++ +||++.++||..|+.+...+ ..+.+.+...++.|..++.+ .. ..++..|++
T Consensus 13 ~~~~f~~~~~-----~~-vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~------~~--~~~~~~~~v 75 (126)
T 1x5e_A 13 TDENWRELLE-----GD-WMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVT------EQ--PGLSGRFII 75 (126)
T ss_dssp CTTTHHHHTS-----SE-EEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETT------TC--HHHHHHTTC
T ss_pred cHHHHHHHhC-----CC-EEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECc------CC--HHHHHHcCC
Confidence 4566776542 23 79999999999999996443 23334444137999998887 32 458899999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
..+|++.++ ..|+ +..+.|..+.++|.+.|.+.+
T Consensus 76 ~~~Pt~~~~--~~G~-~~~~~G~~~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 76 NALPTIYHC--KDGE-FRRYQGPRTKKDFINFISDKE 109 (126)
T ss_dssp CSSSEEEEE--ETTE-EEECCSCCCHHHHHHHHHTCG
T ss_pred cccCEEEEE--eCCe-EEEeecCCCHHHHHHHHHHHh
Confidence 999999999 3587 567889888776666665544
No 125
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=97.72 E-value=0.00014 Score=59.66 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=61.9
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH---------------------
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC--------------------- 201 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg--------------------- 201 (346)
.-.+|++||++.++||..|...-..+-.++.+.+-+++.++.++.++.+. ..+.
T Consensus 28 ~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~~ 102 (142)
T 3eur_A 28 QFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDE-----ELDEWKKHRNDFAKEWTNGYDKELV 102 (142)
T ss_dssp TCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSS-----CHHHHHHHGGGSCTTSEEEECTTCH
T ss_pred HcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCC-----CHHHHHHHHHhcccccccccCccch
Confidence 33579999999999999998876555444445555543689999988872 2221
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeC
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G 232 (346)
..++..|++..+|++.|||+ .|..+....|
T Consensus 103 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~ 132 (142)
T 3eur_A 103 IKNKNLYDLRAIPTLYLLDK-NKTVLLKDAT 132 (142)
T ss_dssp HHHTTCSCCTTCSEEEEECT-TCBEEEEEEC
T ss_pred hhhhhhcCCCcCCeEEEECC-CCcEEecCCC
Confidence 23578899999999999996 6988876544
No 126
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=97.69 E-value=0.00025 Score=59.66 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=71.8
Q ss_pred hcCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhcc----CcEEEEEeecCCCCCCCCh-------------------
Q 036413 144 DENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRA----SNFIFWQVYDDDDDDDDDS------------------- 199 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~----~nFVfw~~~~~~~~~~~~~------------------- 199 (346)
-.+||+||++-.+||.. |...-..+ ..+.+-+++ .++.++.++++. ..+++
T Consensus 24 ~~gk~vll~F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~--~~d~~~~~~~~~~~~~~~~~~l~~ 98 (171)
T 2rli_A 24 FRGQWVLMYFGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDP--ERDDVEAMARYVQDFHPRLLGLTG 98 (171)
T ss_dssp TTTSEEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCS--TTCCHHHHHHHHHTTCTTCCEEEC
T ss_pred hCCCEEEEEEEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECC--CCCCHHHHHHHHHHcCCCeEEEeC
Confidence 35899999999999998 97653221 122222321 378888877761 11122
Q ss_pred ---HHHHHHhhcCCCCCc---------------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 200 ---ECRKVCGYYKLDSLP---------------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 200 ---eg~~~~~~y~~~~~P---------------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
....+++.|++...| ++.|||+ .|+.+..+.|..+++++.+.|.+.+...
T Consensus 99 ~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 99 STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF 166 (171)
T ss_dssp CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 224677889887777 8999997 6999999999899999999999888654
No 127
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=97.69 E-value=9.8e-05 Score=61.79 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=65.3
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-------------------H--H
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-------------------R--K 203 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-------------------~--~ 203 (346)
.+|++||++..+||..|......+ .+...+|-. .++.++.++.+ ..+. . .
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l--~~l~~~~~~-~~~~vv~i~~d------~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLAL--RELYNKYAS-QGFEIYQISLD------GDEHFWKTSADNLPWVCVRDANGAYSS 104 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHH--HHHHHHHGG-GTEEEEEEECS------CCHHHHHHHHTTCSSEEEECSSGGGCH
T ss_pred CCCEEEEEEEcCCChhhHHHHHHH--HHHHHHhcc-CCeEEEEEEcc------CCHHHHHHHHhCCCceEEECCCCcchH
Confidence 579999999999999998764322 112222323 56999999888 2221 1 3
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
++..|++..+|++.|||+ .|+.+..+.|..+.++.+..+.
T Consensus 105 ~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~ 144 (152)
T 2lrt_A 105 YISLYNVTNLPSVFLVNR-NNELSARGENIKDLDEAIKKLL 144 (152)
T ss_dssp HHHHHTCCSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHH
T ss_pred HHHHcCcccCceEEEECC-CCeEEEecCCHHHHHHHHHHHH
Confidence 778899999999999997 6999999999877776555443
No 128
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=97.68 E-value=7.4e-05 Score=61.83 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=68.1
Q ss_pred cEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCC-------------------CChHHHHHHh
Q 036413 147 KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDD-------------------DDSECRKVCG 206 (346)
Q Consensus 147 K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~-------------------~~~eg~~~~~ 206 (346)
|++||++.++||..|+.+.. .+.++.+ + ++.++.++.+.++.. .......++.
T Consensus 31 k~vll~f~~~~C~~C~~~~~------~l~~l~~-~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFP------GLHRVAE-ETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAA 103 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHH------HHHHHHH-HHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHT
T ss_pred CeEEEEEEcccChhHHHHHH------HHHHHHH-HcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHH
Confidence 99999999999999988753 3344333 2 344455555200000 0025577889
Q ss_pred hcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 207 YYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 207 ~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
.|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+...
T Consensus 104 ~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~ 146 (154)
T 3ia1_A 104 RFKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGADL 146 (154)
T ss_dssp TSSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred HhCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence 999999999999996 6999999999999888888887766443
No 129
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=97.68 E-value=0.00014 Score=59.34 Aligned_cols=94 Identities=11% Similarity=0.178 Sum_probs=66.2
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHH----------------
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKV---------------- 204 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~---------------- 204 (346)
+.-.+|++||++.++||..|..+-..+-..+.+.+.+++.++.++.++.+. +.+ ..++
T Consensus 23 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~ 97 (142)
T 3ewl_A 23 SRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDE-----NREEWATKAVYMPQGWIVGWNKAG 97 (142)
T ss_dssp GGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSS-----CHHHHHHHHTTSCTTCEEEECTTC
T ss_pred hhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecC-----CHHHHHHHHHHcCCCcceeeCCcc
Confidence 334689999999999999999875555445556665552679999988872 222 2222
Q ss_pred ----HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 205 ----CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 205 ----~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
+..|++..+|++.|||+ .|+.+. +.++.+++.+.|.
T Consensus 98 ~~~~~~~~~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~ 137 (142)
T 3ewl_A 98 DIRTRQLYDIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLA 137 (142)
T ss_dssp HHHHTTCSCCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHH
T ss_pred chhhHHHcCCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHH
Confidence 34789999999999997 688765 4466665555544
No 130
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=97.65 E-value=0.00014 Score=64.77 Aligned_cols=101 Identities=7% Similarity=0.235 Sum_probs=76.8
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc---EEEEEeecCCCCCCCChHHHHHHh
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN---FIFWQVYDDDDDDDDDSECRKVCG 206 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n---FVfw~~~~~~~~~~~~~eg~~~~~ 206 (346)
+-..+|++++ .++|.+||++.++||..|+.+...+ ..+.+-++ .. +.|..++.+ .. ..++.
T Consensus 20 l~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~~~~~~vd~~------~~--~~l~~ 83 (241)
T 3idv_A 20 LNDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILK-DKDPPIPVAKIDAT------SA--SVLAS 83 (241)
T ss_dssp ECTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHH-TSSSCCCEEEEETT------TC--HHHHH
T ss_pred ecccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHh-hcCCceEEEEEecc------CC--HHHHH
Confidence 3456777766 4589999999999999999996433 33333344 33 888888877 32 57899
Q ss_pred hcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 207 YYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 207 ~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|++..+|++.++. .|+.+ ...|..+.+++.+.+.+.+..
T Consensus 84 ~~~v~~~Pt~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~ 123 (241)
T 3idv_A 84 RFDVSGYPTIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQP 123 (241)
T ss_dssp HTTCCSSSEEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred hcCCCcCCEEEEEc--CCCcc-cccCcccHHHHHHHHhhccCc
Confidence 99999999999997 47766 478888999888888887654
No 131
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=97.65 E-value=0.00025 Score=60.17 Aligned_cols=110 Identities=9% Similarity=0.013 Sum_probs=84.8
Q ss_pred hHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhc--cCc-EEEEEeec
Q 036413 116 NNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIR--ASN-FIFWQVYD 190 (346)
Q Consensus 116 ~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~--~~n-FVfw~~~~ 190 (346)
.++|... +- ..+-..+|++.+. ..+.+||++..+| |.+|+++ .+.+-++.+ +.. +.|+.+++
T Consensus 11 ~~rl~~~-g~--~~~t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~i------aPvleela~e~~g~~v~~~KVdv 77 (140)
T 2qgv_A 11 WQRMLAR-GW--TPVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDN------PVMIGELLHEFPDYTWQVAIADL 77 (140)
T ss_dssp HHHHHHT-TC--EECCHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHH------HHHHHHHHTTCTTSCCEEEECCH
T ss_pred HHHHHhc-CC--ccCCHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHH------HhHHHHHHHHcCCCeEEEEEEEC
Confidence 3455544 33 2345677887772 5678999999988 8999888 466666665 134 78888766
Q ss_pred CCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 191 DDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 191 ~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+ +...++..|++.+.|++++.- .|+.+.++.|..+.+.+.+.|.+++.
T Consensus 78 D--------e~~~lA~~ygV~sIPTlilFk--~G~~v~~~~G~~~k~~l~~~i~~~l~ 125 (140)
T 2qgv_A 78 E--------QSEAIGDRFGAFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVE 125 (140)
T ss_dssp H--------HHHHHHHHHTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred C--------CCHHHHHHcCCccCCEEEEEE--CCEEEEEEecCCCHHHHHHHHHHHhc
Confidence 6 567899999999999999996 69999999999998889999888883
No 132
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=97.65 E-value=4e-05 Score=62.07 Aligned_cols=96 Identities=9% Similarity=0.089 Sum_probs=66.0
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCC-------CCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCC----
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSP-------KEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDD---- 198 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~-------~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~---- 198 (346)
..+|++++..+ .+|.++|++.++ ||..|+.+. +.+.++.+ ..++.|..++++ .
T Consensus 12 ~~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vd~~------~~~~~ 77 (123)
T 1wou_A 12 FEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAE------PVVREGLKHISEGCVFIYCQVG------EKPYW 77 (123)
T ss_dssp HHHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHH------HHHHHHGGGCCTTEEEEEEECC------CHHHH
T ss_pred HHHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhh------HHHHHHHHHcCCCcEEEEEECC------Cchhh
Confidence 34566666544 489999999999 999999985 44555554 147999999984 1
Q ss_pred -hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 199 -SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 199 -~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.+...++..|++..+|++.+++. |.++....| .+++ .|.+|++
T Consensus 78 ~d~~~~~~~~~~i~~~Pt~~~~~~--~~~~~g~~~-~~~~----~l~~~i~ 121 (123)
T 1wou_A 78 KDPNNDFRKNLKVTAVPTLLKYGT--PQKLVESEC-LQAN----LVEMLFS 121 (123)
T ss_dssp HCTTCHHHHHHCCCSSSEEEETTS--SCEEEGGGG-GCHH----HHHHHHH
T ss_pred hchhHHHHHHCCCCeeCEEEEEcC--CceEecccc-CCHH----HHHHHHh
Confidence 12345788899999999999986 555543333 3444 3445543
No 133
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.64 E-value=6.2e-05 Score=60.95 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=67.2
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI 222 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~ 222 (346)
+.+|.+||++.++||..|+.+...+ ..+.+-++ ..+++|..++.+. . ..++..|++..+|++.++++
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~vd~~~------~--~~~~~~~~v~~~Pt~~~~~~- 90 (133)
T 2dj3_A 23 DPKKDVLIEFYAPWCGHCKQLEPIY---TSLGKKYKGQKDLVIAKMDATA------N--DITNDQYKVEGFPTIYFAPS- 90 (133)
T ss_dssp CTTSEEEEEECCTTCSHHHHHHHHH---HHHHHHHTTSSSEEEEEECTTT------S--CCCCSSCCCSSSSEEEEECT-
T ss_pred cCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCCEEEEEecCCc------C--HHHHhhcCCCcCCEEEEEeC-
Confidence 3589999999999999999996442 23333333 1369999888772 2 34567899999999999985
Q ss_pred CCceE-EEEe-CCCChHHHHHHHHHHHHcC
Q 036413 223 TGEKM-RKWC-GMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 223 tge~l-~~~~-G~~~~~~~i~~L~~fl~~~ 250 (346)
.|+.. ..+. |..++++|.+.|.+.+...
T Consensus 91 g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 91 GDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp TCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred CCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence 23321 2355 6678888888887776543
No 134
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=97.63 E-value=0.00015 Score=53.71 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=60.8
Q ss_pred EEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413 149 LLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR 228 (346)
Q Consensus 149 LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~ 228 (346)
.+|++.++||..|+.+...+ +.+.+-.. .++.|..++.++ . ..++..|++..+|++.+ .|+.
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~~-----~---~~~~~~~~v~~~Pt~~~----~G~~-- 65 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVV---DEAKKEFG-DKIDVEKIDIMV-----D---REKAIEYGLMAVPAIAI----NGVV-- 65 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHH---HHHHHHHC-SSCCEEEECTTT-----C---GGGGGGTCSSCSSEEEE----TTTE--
T ss_pred EEEEEECCCCcchHHHHHHH---HHHHHHhc-CCeEEEEEECCC-----C---HHHHHhCCceeeCEEEE----CCEE--
Confidence 47889999999999996432 33434444 578888887772 2 36888999999999998 4766
Q ss_pred EEeCCCChHHHHHHHHHHH
Q 036413 229 KWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 229 ~~~G~~~~~~~i~~L~~fl 247 (346)
++.|..+.+++.+.|.+.+
T Consensus 66 ~~~G~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 66 RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp EEECSSCCHHHHHHHHHHC
T ss_pred EEccCCCHHHHHHHHHHHh
Confidence 6789888888888777654
No 135
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=97.61 E-value=0.00027 Score=59.28 Aligned_cols=96 Identities=7% Similarity=0.051 Sum_probs=68.3
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCC-------------CCCCCChHH-----
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDD-------------DDDDDDSEC----- 201 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~-------------~~~~~~~eg----- 201 (346)
+.-.+|++||++.++||..|..+. +.+.++.+ + ++.|..++.+. ....++.+.
T Consensus 33 ~~~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~-~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (165)
T 3ha9_A 33 NNVGGDVVILWFMAAWCPSCVYMA------DLLDRLTE-KYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFI 105 (165)
T ss_dssp GGCCSSEEEEEEECTTCTTHHHHH------HHHHHHHH-HCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHH
T ss_pred HHhCCCEEEEEEECCCCcchhhhH------HHHHHHHH-HcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHH
Confidence 344789999999999999998874 56666666 3 67787777650 000002211
Q ss_pred --------------HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCC-ChHHHHHHHHHHH
Q 036413 202 --------------RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMV-DPVSLLEDLLSFM 247 (346)
Q Consensus 202 --------------~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~-~~~~~i~~L~~fl 247 (346)
..++..|++..+|++.|||+ .|+.+. .|.. +.+++.+.|.+.+
T Consensus 106 ~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 106 ANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp HHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred HHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 26778899999999999997 688777 7877 8887777776543
No 136
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=0.00032 Score=57.98 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=68.6
Q ss_pred hhcCcEEEEEecCCCCcc--ccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH--------------------
Q 036413 143 SDENKWLLVNLQSPKEFT--SHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------- 200 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~--c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------- 200 (346)
.-.+|++||++..+||.. |......+ .+...+|-++.++.++.++.+. +.+
T Consensus 30 ~~~gk~vll~F~a~~C~~v~C~~~~~~l--~~l~~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~ 102 (150)
T 3fw2_A 30 AFKQKSLLINFWASWNDSISQKQSNSEL--REIYKKYKKNKYIGMLGISLDV-----DKQQWKDAIKRDTLDWEQVCDFG 102 (150)
T ss_dssp TTTTSEEEEEEECTTCCCHHHHHHHHHH--HHHHHHHTTCSSEEEEEEECCS-----CHHHHHHHHHHTTCCSEEECCSC
T ss_pred hhCCCEEEEEEEeCCCCchHHHHHHHHH--HHHHHHhccCCCeEEEEEEcCC-----CHHHHHHHHHHhCCCceEEEcCc
Confidence 336899999999999999 98764322 1112222031468999988882 211
Q ss_pred --HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 201 --CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 201 --g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
...++..|++..+|++.|||+ .|+.+..+ .+++++.+.|.+.+..
T Consensus 103 ~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~ll~~ 149 (150)
T 3fw2_A 103 GLNSEVAKQYSIYKIPANILLSS-DGKILAKN---LRGEELKKKIENIVEE 149 (150)
T ss_dssp GGGCHHHHHTTCCSSSEEEEECT-TSBEEEES---CCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHcCCCccCeEEEECC-CCEEEEcc---CCHHHHHHHHHHHHhc
Confidence 347888999999999999997 69888765 3788888888877653
No 137
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=97.59 E-value=0.00013 Score=61.41 Aligned_cols=99 Identities=12% Similarity=0.093 Sum_probs=60.4
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhccC--cEE--EEEeecCCCCCCCChHHHH
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIRAS--NFI--FWQVYDDDDDDDDDSECRK 203 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~~~--nFV--fw~~~~~~~~~~~~~eg~~ 203 (346)
+-..+|++++..+ +.++|++...+ |..|+.|. +.+.++.+ + ++. |..++++ +...
T Consensus 22 l~~~~f~~~i~~~----~~~vv~f~~~~~~C~~C~~l~------P~l~~la~-~~~~v~~~~~~Vd~d--------~~~~ 82 (142)
T 2es7_A 22 VEASTVDDWIKRV----GDGVILLSSDPRRTPEVSDNP------VMIAELLR-EFPQFDWQVAVADLE--------QSEA 82 (142)
T ss_dssp CCCC--------C----CSEEEEECCCSCC----CCHH------HHHHHHHH-TCTTSCCEEEEECHH--------HHHH
T ss_pred cccccHHHHHHhC----CCEEEEEECCCCCCccHHHHH------HHHHHHHH-HhcccceeEEEEECC--------CCHH
Confidence 4457788877532 23677777665 88998884 55555555 3 456 7777655 4567
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
++..|++..+|++.++ +.|+.+.++.|..+.+++.+.|.+.+..
T Consensus 83 la~~~~V~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 83 IGDRFNVRRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp HHHTTTCCSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred HHHhcCCCcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999 4799998999998988888888887754
No 138
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.57 E-value=0.00037 Score=61.60 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=66.8
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHhcc---CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA---SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~---~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
.+++.+|++.++||..|+.+...+ ..+..-... .++.|..++.+ . ...++..|++..+|++.++.
T Consensus 133 ~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~~~- 200 (226)
T 1a8l_A 133 DQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAI------E--YPEWADQYNVMAVPKIVIQV- 200 (226)
T ss_dssp CSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGG------G--CHHHHHHTTCCSSCEEEEEE-
T ss_pred CCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEcc------c--CHHHHHhCCCcccCeEEEEe-
Confidence 445559999999999999985332 222222220 37888888776 2 34688999999999988775
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
.|+.+..+.|..+.++|.+.|.+.+
T Consensus 201 -~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 201 -NGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp -TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred -CCceeEEEcCCCCHHHHHHHHHHhh
Confidence 6888888999999888888887765
No 139
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=97.53 E-value=0.00032 Score=57.45 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=59.3
Q ss_pred HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC---------------------
Q 036413 141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD--------------------- 198 (346)
Q Consensus 141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~--------------------- 198 (346)
.+.-.+|++||++..+||..|+.+...+ ..+.+-++ ..++.+..++.+. +
T Consensus 23 l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~~~ 94 (144)
T 1i5g_A 23 LPSLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDE-----SAEDFKDYYAKMPWLALPFEDR 94 (144)
T ss_dssp GGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCS-----SHHHHHHHHTTCSSEECCTTCH
T ss_pred HHHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCC-----CHHHHHHHHHhCCccccccCch
Confidence 3444689999999999999998875433 22333333 1478888888872 2
Q ss_pred hHHHHHHhhcCCCCCceEEEEeCCCCceEEEE
Q 036413 199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKW 230 (346)
Q Consensus 199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~ 230 (346)
.....++..|++..+|++.|||+..|+.+...
T Consensus 95 d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 95 KGMEFLTTGFDVKSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHHHHHHHcCCCCCCEEEEEECCCCcEEecc
Confidence 22567889999999999999995468877653
No 140
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=97.52 E-value=0.00029 Score=52.09 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=60.9
Q ss_pred cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCce
Q 036413 147 KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEK 226 (346)
Q Consensus 147 K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~ 226 (346)
+..+|++.++||..|+.+...+ +.+.+-.. .++.|..++.++ . ..++..|++..+|++.+ .|+.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~~-----~---~~~~~~~~v~~~Pt~~~----~G~~ 66 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMP-DAVEVEYINVME-----N---PQKAMEYGIMAVPTIVI----NGDV 66 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHH---HHHHHHCS-SSEEEEEEESSS-----S---CCTTTSTTTCCSSEEEE----TTEE
T ss_pred ceEEEEEeCCCCCchHHHHHHH---HHHHHHcC-CceEEEEEECCC-----C---HHHHHHCCCcccCEEEE----CCEE
Confidence 4568899999999999985422 23333344 589999888872 2 25778899999999998 4765
Q ss_pred EEEEeCCCChHHHHHHHHHH
Q 036413 227 MRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 227 l~~~~G~~~~~~~i~~L~~f 246 (346)
.+.|..+++++.+.|.+.
T Consensus 67 --~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 67 --EFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp --ECCSSSSSHHHHHHHHHH
T ss_pred --eeecCCCHHHHHHHHHHh
Confidence 778988888887777654
No 141
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.51 E-value=0.00013 Score=48.20 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=34.4
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN 48 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~ 48 (346)
++.++.|.+++++ |-+.+.|++.|..++||++.|++..|
T Consensus 2 ~~~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3456789999999 88999999999999999999998764
No 142
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=97.49 E-value=6.1e-05 Score=69.55 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=74.2
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
...|.+++..+ ..+|+++|++..+||..|+.+. +.+.++.. -.++.|..++++ . ..++..|++
T Consensus 120 ~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~------p~l~~La~~~~~v~f~kVd~d------~---~~l~~~~~I 183 (245)
T 1a0r_P 120 GEQFLETIEKE-QKITTIVVHIYEDGIKGCDALN------SSLICLAAEYPMVKFCKIKAS------N---TGAGDRFSS 183 (245)
T ss_dssp HHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHH------HHHHHHHHHCTTSEEEEEEHH------H---HCCTTSSCT
T ss_pred HHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHH------HHHHHHHHHCCCCEEEEEeCC------c---HHHHHHCCC
Confidence 34566666544 3589999999999999999995 34444443 024788888776 3 447889999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCCh---HHHHHHHHHHHHcCCc
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDP---VSLLEDLLSFMESGPR 252 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~---~~~i~~L~~fl~~~~~ 252 (346)
..+|+++|+. .|+.+..+.|..+. +-....|..+|..+-.
T Consensus 184 ~~~PTll~~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~ 226 (245)
T 1a0r_P 184 DVLPTLLVYK--GGELLSNFISVTEQLAEEFFTGDVESFLNEYGL 226 (245)
T ss_dssp TTCSEEEEEE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred CCCCEEEEEE--CCEEEEEEeCCcccccccccHHHHHHHHHHcCC
Confidence 9999998886 69998888886431 1245678888877643
No 143
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.46 E-value=0.00038 Score=58.61 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=65.5
Q ss_pred cCcE-EEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHH
Q 036413 145 ENKW-LLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRK 203 (346)
Q Consensus 145 ~~K~-LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~ 203 (346)
.+|+ ++|++. ++||..|......+ .+...+|=. .++.++.++.+ +++ ...
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~-~~v~vv~vs~d------~~~~~~~~~~~~~~~~~~~~d~~~~ 97 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAF--RDNWDLLKD-YDVVVIGVSSD------DINSHKRFKEKYKLPFILVSDPDKK 97 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHH--HHTHHHHHT-TCEEEEEEESC------CHHHHHHHHHHTTCCSEEEECTTSH
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHH-cCCEEEEEeCC------CHHHHHHHHHHhCCCceEEECCcHH
Confidence 4676 999998 99999998764332 112222323 57888888887 442 345
Q ss_pred HHhhcCCCC----CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 204 VCGYYKLDS----LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 204 ~~~~y~~~~----~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
++..|++.. +|++.|||+ .|+.+..+.|...+...++.+.+.++
T Consensus 98 ~~~~~~v~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il~~l~ 145 (161)
T 3drn_A 98 IRELYGAKGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEALKALK 145 (161)
T ss_dssp HHHHTTCCCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHHHHHH
T ss_pred HHHHcCCCCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHHHHHH
Confidence 677888877 999999997 69999999995555555555555553
No 144
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=97.46 E-value=0.00032 Score=59.66 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChH------------------
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSE------------------ 200 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~e------------------ 200 (346)
..+.-.+|++||++..+||..|+.+...+ ..+.+-+++ .++.+..++++. +.+
T Consensus 42 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~~ 113 (165)
T 3s9f_A 42 DMDSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDE-----EEDDFNAYYAKMPWLSIPFAN 113 (165)
T ss_dssp CSGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCC-----SHHHHHHHHTTCSSEECCTTC
T ss_pred cHHHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCC-----CHHHHHHHHHhCCCcccccCc
Confidence 34445689999999999999998875333 223333341 378888888772 211
Q ss_pred ---HHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 201 ---CRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 201 ---g~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
...++..|++..+|++.|||+.+|+.+..
T Consensus 114 ~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 114 RNIVEALTKKYSVESIPTLIGLNADTGDTVTT 145 (165)
T ss_dssp HHHHHHHHHHTTCCSSSEEEEEETTTCCEEES
T ss_pred hhHHHHHHHHcCCCCCCEEEEEeCCCCEEEec
Confidence 26889999999999999999755887765
No 145
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=97.44 E-value=0.00043 Score=56.89 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=59.8
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC--------------------
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD-------------------- 198 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~-------------------- 198 (346)
..+.-.+|++||++.++||..|+.+...+ ..+.+-++ ..++.+..++.+. +
T Consensus 22 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~~ 93 (146)
T 1o8x_A 22 EVKSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDE-----EEDGFAGYFAKMPWLAVPFAQ 93 (146)
T ss_dssp EGGGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCC-----SHHHHHHHHTTCSSEECCGGG
T ss_pred cHHHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCC-----CHHHHHHHHHHCCceeeccch
Confidence 34445689999999999999998875333 22223233 1478888888872 2
Q ss_pred -hHHHHHHhhcCCCCCceEEEEeCCCCceEEEE
Q 036413 199 -SECRKVCGYYKLDSLPVVLVIDPITGEKMRKW 230 (346)
Q Consensus 199 -~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~ 230 (346)
.....++..|++..+|++.|||+..|+.+...
T Consensus 94 ~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 94 SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred hhHHHHHHHHhCCCCCCEEEEEECCCCeEEEec
Confidence 22567889999999999999995468877653
No 146
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.43 E-value=0.00016 Score=57.95 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=40.5
Q ss_pred hhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 7 KKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 7 ~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
..+.++.|...+++ ||.+++.|+..|..|||||+.||...|+..
T Consensus 36 d~d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 36 DADFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp CHHHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35668899999999 999999999999999999999999999865
No 147
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.42 E-value=0.00018 Score=71.33 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=80.6
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL 210 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~ 210 (346)
-..+|++++ .....++.+||+++++||..|+.|.... +.+.+.++ ..+.|..++.+ . ...++..|++
T Consensus 7 ~~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~-~~v~~~~vd~~------~--~~~l~~~~~v 73 (481)
T 3f8u_A 7 TDDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLK-GIVPLAKVDCT------A--NTNTCNKYGV 73 (481)
T ss_dssp CTTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCCEEEEETT------T--CHHHHHHTTC
T ss_pred cHHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhc-CceEEEEEECC------C--CHHHHHhcCC
Confidence 355688777 3344569999999999999999996433 45666666 66778888777 3 3679999999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
..||++.++. .|+.+....|..+.+.+++.|.+.+.
T Consensus 74 ~~~Ptl~~~~--~g~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 74 SGYPTLKIFR--DGEEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp CEESEEEEEE--TTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred CCCCEEEEEe--CCceeeeecCccCHHHHHHHHHhhcc
Confidence 9999999995 58888888999898888887777654
No 148
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=97.41 E-value=0.00037 Score=67.55 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=73.4
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHHH
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRKV 204 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~~ 204 (346)
-.+|++||++..+||..|+.+...+ ..+.+-+.+.++.++.++.+.+..+++++ ...+
T Consensus 80 l~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l 156 (352)
T 2hyx_A 80 LRGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYAT 156 (352)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHH
T ss_pred hCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHH
Confidence 3589999999999999998774332 12222233147999998765100000111 2457
Q ss_pred HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 205 ~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
+..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+..
T Consensus 157 ~~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e 200 (352)
T 2hyx_A 157 WTNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLND 200 (352)
T ss_dssp HHHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 78899999999999996 699999999988999999999888854
No 149
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=97.38 E-value=0.00023 Score=61.39 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred cCc-EEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC--CCCh-------------------HHH
Q 036413 145 ENK-WLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD--DDDS-------------------ECR 202 (346)
Q Consensus 145 ~~K-~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~--~~~~-------------------eg~ 202 (346)
.+| ++||++.++||..|+..-..+ +....+|-+ .++.++.++.+.... .++. +..
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~l--~~l~~~~~~-~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~ 120 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHEL--VRLANDYMP-KGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ 120 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHHH--HHHHHHHGG-GTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHH--HHHHHHHHh-CCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch
Confidence 466 599999999999998664222 111222223 468888888751000 0011 123
Q ss_pred HHHhhcCCCCCceEEEEeCCCCceEEEE---------eCCCChHHHHHHHHHHHHcCCc
Q 036413 203 KVCGYYKLDSLPVVLVIDPITGEKMRKW---------CGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 203 ~~~~~y~~~~~P~i~iidp~tge~l~~~---------~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
.++..|++..+|++.|||+ .|+.+..+ .|..+++++.+.|.+.+...+.
T Consensus 121 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~ 178 (196)
T 2ywi_A 121 EVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPV 178 (196)
T ss_dssp HHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCC
Confidence 5677888889999999996 69988773 4667889999999998876543
No 150
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=97.37 E-value=0.00059 Score=66.00 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=77.7
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-----cCcEEEEEeecCCCCCCCChHHHHHH
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-----ASNFIFWQVYDDDDDDDDDSECRKVC 205 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-----~~nFVfw~~~~~~~~~~~~~eg~~~~ 205 (346)
-..+|++++ ..+|++||++.++||..|+.+... | +.+.+.++ ..++.|..++.+ .. ..++
T Consensus 11 ~~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~------~~--~~l~ 75 (382)
T 2r2j_A 11 DTENIDEIL----NNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCD------QH--SDIA 75 (382)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETT------TC--HHHH
T ss_pred CHHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECC------cc--HHHH
Confidence 356688766 357899999999999999999543 2 34444442 045889998877 32 5699
Q ss_pred hhcCCCCCceEEEEeCCCCceEE-EEeCCCChHHHHHHHHHHHHc
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMR-KWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~-~~~G~~~~~~~i~~L~~fl~~ 249 (346)
..|++..||++.++. .|+.+. ...|..+.+.+++.|.+.+..
T Consensus 76 ~~~~v~~~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 76 QRYRISKYPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKSD 118 (382)
T ss_dssp HHTTCCEESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred HhcCCCcCCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhccC
Confidence 999999999999885 588776 478988999888888887754
No 151
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.37 E-value=0.00056 Score=68.35 Aligned_cols=100 Identities=10% Similarity=0.180 Sum_probs=79.3
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
+-..+|++++ +.+|++||+++++||..|+.+.... +.+.+-++ . ++.|..++.+ .. ..++..|
T Consensus 19 l~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~-~~~v~~~~vd~~------~~--~~l~~~~ 82 (504)
T 2b5e_A 19 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEY---VKAAETLV-EKNITLAQIDCT------EN--QDLCMEH 82 (504)
T ss_dssp CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTTCEEEEEETT------TC--HHHHHHT
T ss_pred CCHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhc-cCCeEEEEEECC------CC--HHHHHhc
Confidence 3467788876 3589999999999999999995432 44555566 5 5999999888 32 5699999
Q ss_pred CCCCCceEEEEeCCCCce--EEEEeCCCChHHHHHHHHHHH
Q 036413 209 KLDSLPVVLVIDPITGEK--MRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~--l~~~~G~~~~~~~i~~L~~fl 247 (346)
++..||++.++.. |+. +....|..+.+.+++.|.+.+
T Consensus 83 ~v~~~Pt~~~~~~--g~~~~~~~~~G~~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 83 NIPGFPSLKIFKN--SDVNNSIDYEGPRTAEAIVQFMIKQS 121 (504)
T ss_dssp TCCSSSEEEEEET--TCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEeC--CccccceeecCCCCHHHHHHHHHHhc
Confidence 9999999999974 776 778889889888888877654
No 152
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00055 Score=58.08 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=65.0
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHH---hccCcEEEEEeecCCC---CCCCChHHHHHH------------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQT---IRASNFIFWQVYDDDD---DDDDDSECRKVC------------ 205 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~---i~~~nFVfw~~~~~~~---~~~~~~eg~~~~------------ 205 (346)
-.+||+||++..+||..|. .- +.+.++ +++.++.++.++.+.. +.+...+..+++
T Consensus 30 ~~Gk~vll~F~a~wC~~C~-~~------~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~ 102 (171)
T 3cmi_A 30 LKGKVVLIVNVASKCGFTP-QY------KELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMK 102 (171)
T ss_dssp GTTCEEEEEEEESSSCCHH-HH------HHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBC
T ss_pred cCCCEEEEEEEecCCCcch-hH------HHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEe
Confidence 3689999999999999998 42 233333 2225688888876310 000011112222
Q ss_pred ------------------hhcCCCCCc------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 206 ------------------GYYKLDSLP------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 206 ------------------~~y~~~~~P------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
..|++..+| ++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus 103 d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 169 (171)
T 3cmi_A 103 KIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLKE 169 (171)
T ss_dssp CCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred eccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 246777889 9999997 699999999988999898888887754
No 153
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=97.35 E-value=0.00045 Score=56.32 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=59.1
Q ss_pred HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC--------------------
Q 036413 140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD-------------------- 198 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~-------------------- 198 (346)
..+.-++|++||++.++||..|+.+...+ ..+.+-++ +.++.+..++.+. +
T Consensus 22 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~-----~~~~~~~~~~~~~~~~~~~~~ 93 (144)
T 1o73_A 22 SLGSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDE-----NESDFHDYYGKMPWLALPFDQ 93 (144)
T ss_dssp CSGGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCS-----SHHHHHHHHTTCSSEECCTTC
T ss_pred cHHHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCC-----CHHHHHHHHHhCCceEeeccc
Confidence 33445789999999999999998875332 11222222 1578888888872 2
Q ss_pred -hHHHHHHhhcCCCCCceEEEEeCCCCceEEEE
Q 036413 199 -SECRKVCGYYKLDSLPVVLVIDPITGEKMRKW 230 (346)
Q Consensus 199 -~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~ 230 (346)
.....++..|++..+|++.|||+..|+.+...
T Consensus 94 ~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 94 RSTVSELGKTFGVESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred hhHHHHHHHHcCCCCCCEEEEEECCCCeEEecc
Confidence 22567889999999999999995578877653
No 154
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.33 E-value=0.00088 Score=56.03 Aligned_cols=101 Identities=11% Similarity=0.197 Sum_probs=66.8
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHh-hc-----------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCG-YY----------- 208 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~-~y----------- 208 (346)
-.+||+||++-.+||..|...-..+ ..+.+-+++.++.++.++.+.. +.+...+...++. .|
T Consensus 30 ~~gk~vll~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (170)
T 2p5q_A 30 FKGKVLLIVNVASKCGMTNSNYAEM---NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKID 106 (170)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCB
T ss_pred hCCCEEEEEEEeccCCccHHHHHHH---HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeec
Confidence 3689999999999999998754332 1222222214688888877510 0011223344444 32
Q ss_pred ------------------CC--CCCc---eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 209 ------------------KL--DSLP---VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 209 ------------------~~--~~~P---~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
++ ..+| ++.|||+ .|+.+.++.|..+++++.+.|.+.+.
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (170)
T 2p5q_A 107 VNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE 168 (170)
T ss_dssp SSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred cCCCchHHHHHHHHhcCCCccCCcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence 23 4578 9999997 69999999998888888888887664
No 155
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.30 E-value=0.00069 Score=58.76 Aligned_cols=102 Identities=11% Similarity=0.115 Sum_probs=67.6
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHH-hh------------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVC-GY------------ 207 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~-~~------------ 207 (346)
-.+||+||++-.+||..|......+ ..+.+-+.+.++.++.++.+.. +.+...+..+++ ..
T Consensus 46 ~~Gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D 122 (190)
T 2vup_A 46 HKGSPLLIYNVASKCGYTKGGYETA---TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN 122 (190)
T ss_dssp GTTSCEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCB
T ss_pred cCCCEEEEEEecCCCCccHHHHHHH---HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecc
Confidence 3689999999999999996553222 1122222214588888876510 001122333344 22
Q ss_pred -----------------cCCCCCc------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 208 -----------------YKLDSLP------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 208 -----------------y~~~~~P------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
|++..+| ++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus 123 ~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 123 VNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES 186 (190)
T ss_dssp SSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred cCcccccHHHHHHHhhcCCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3555678 9999996 699999999999999999999888864
No 156
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.28 E-value=0.00062 Score=56.72 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=63.3
Q ss_pred cCc-EEEEEec-CCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-------------------
Q 036413 145 ENK-WLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE------------------- 200 (346)
Q Consensus 145 ~~K-~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e------------------- 200 (346)
.+| |++|++. ++||..|.... +.+.++.+ +.++.++.++.+ +++
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d------~~~~~~~~~~~~~~~~~~~~d~ 101 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVG------PPPTHKIWATQSGFTFPLLSDF 101 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESC------CHHHHHHHHHHHTCCSCEEECT
T ss_pred cCCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCC------CHHHHHHHHHhcCCCceEEecC
Confidence 455 9999998 99999997653 34444433 247888888877 432
Q ss_pred --HHHHHhhcCCC----CCc--eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 201 --CRKVCGYYKLD----SLP--VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 201 --g~~~~~~y~~~----~~P--~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
...++..|++. .+| ++.|||+ .|+.+..+.|..+....++.|...++
T Consensus 102 ~~~~~~~~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~ 156 (160)
T 1xvw_A 102 WPHGAVSQAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGEVRDQRLWTDALA 156 (160)
T ss_dssp TTTTHHHHHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred CcChHHHHHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 45677888887 888 9999997 69999888886543333444444443
No 157
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=97.28 E-value=0.00056 Score=58.75 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=67.1
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCC--CCCh-------------------H
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDD--DDDS-------------------E 200 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~--~~~~-------------------e 200 (346)
-.+|++||++.++||..|+..- +.+.++.+ ...+.++.++.+.... +++. .
T Consensus 31 ~~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~ 104 (188)
T 2cvb_A 31 FHEPLLAVVFMCNHCPYVKGSI------GELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDE 104 (188)
T ss_dssp CCSSEEEEEEECSSCHHHHTTH------HHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECS
T ss_pred hCCCEEEEEEECCCCccHHHHH------HHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECC
Confidence 3579999999999999997653 33333332 0238888888751000 0011 1
Q ss_pred HHHHHhhcCCCCCceEEEEeCCCCceEEEE--------eCCCChHHHHHHHHHHHHcCC
Q 036413 201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKW--------CGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~--------~G~~~~~~~i~~L~~fl~~~~ 251 (346)
...++..|++..+|++.|||+ .|+.+... .|..+++++.+.|.+.+...+
T Consensus 105 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~ 162 (188)
T 2cvb_A 105 TQEVAKAYRALRTPEVFLFDE-RRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE 162 (188)
T ss_dssp SSHHHHHTTCCEESEEEEECT-TCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred cchHHHHcCCCCCCeEEEECC-CCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence 235677888999999999996 68877661 122367888888888876544
No 158
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=97.28 E-value=0.0003 Score=50.93 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=39.6
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
..+.++|..|+.. ||-+.+-|..+|+.++||++.|+..|-+.
T Consensus 5 ~~q~~mv~~~s~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 5 PEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp HHHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5788999999999 99999999999999999999999999873
No 159
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=97.27 E-value=0.0007 Score=55.24 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=66.5
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHhhcCCC-CCceEEEE
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCGYYKLD-SLPVVLVI 219 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~~y~~~-~~P~i~ii 219 (346)
..+++|.++|+.|++||.+|.++. +.+.++.++.+.-|+-+++++ ..+- ..++..|++. .-|.+.++
T Consensus 20 ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde-----~r~~Sn~IA~~~~V~h~sPq~il~ 88 (112)
T 3iv4_A 20 VIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQ-----ERDLSDYIAKKTNVKHESPQAFYF 88 (112)
T ss_dssp HHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGG-----GHHHHHHHHHHHTCCCCSSEEEEE
T ss_pred HHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeec-----CchhhHHHHHHhCCccCCCeEEEE
Confidence 334499999999999999999984 555666543577788888882 2221 4588999998 59999999
Q ss_pred eCCCCceEEEE-eCCCChHHHHHH
Q 036413 220 DPITGEKMRKW-CGMVDPVSLLED 242 (346)
Q Consensus 220 dp~tge~l~~~-~G~~~~~~~i~~ 242 (346)
- .|+.++.. .|.++.+.+.+.
T Consensus 89 k--~G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 89 V--NGEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp E--TTEEEEEEEGGGCSHHHHHHH
T ss_pred E--CCEEEEEeeccccCHHHHHHh
Confidence 6 69999874 567888765543
No 160
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=97.25 E-value=0.00039 Score=62.68 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=71.7
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
-..+|.+++..+ ..+|+++|++..+||..|+.|. +.+.++.. . ++.|..++++ ...++..|
T Consensus 106 ~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~------p~l~~la~-~~~~v~f~~vd~~---------~~~l~~~~ 168 (217)
T 2trc_P 106 TGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALN------SSLECLAA-EYPMVKFCKIRAS---------NTGAGDRF 168 (217)
T ss_dssp SHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHH------HHHHHHHT-TCTTSEEEEEEHH---------HHTCSTTS
T ss_pred CHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHH------HHHHHHHH-HCCCeEEEEEECC---------cHHHHHHC
Confidence 345677766544 2469999999999999999995 44555554 3 4677776543 34577889
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCCh---HHHHHHHHHHHHcCC
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDP---VSLLEDLLSFMESGP 251 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~---~~~i~~L~~fl~~~~ 251 (346)
++..+|+++++. .|+.+..+.|..+. +-..+.|..+|..+-
T Consensus 169 ~i~~~PTl~~~~--~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 169 SSDVLPTLLVYK--GGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp CGGGCSEEEEEE--TTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred CCCCCCEEEEEE--CCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 999999999996 69998888885442 112356677776543
No 161
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.24 E-value=0.0011 Score=57.58 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=67.2
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+|++||++. .+||..|...-..+ ..+.+-+.+.++.++.++.+ +.+
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d------~~~~~~~~~~~~~~~~~~~~~~~~d~ 114 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAF---SKLNDEFEDRDAQILGVSID------SEFAHFQWRAQHNDLKTLPFPMLSDI 114 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHH---HHTHHHHHTTTEEEEEEESS------CHHHHHHHHHHCTTGGGCCSCEEECT
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHH---HHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHhccccCCceeEEeCC
Confidence 5799999999 99999997653222 11222222247888888877 322
Q ss_pred HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHHH
Q 036413 201 CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFME 248 (346)
Q Consensus 201 g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl~ 248 (346)
...++..|++. .+|++.|||+ .|+.+..+.|.. +++++++.|...+.
T Consensus 115 ~~~~~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 115 KRELSQAAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS 170 (195)
T ss_dssp TSHHHHHHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred chHHHHHhCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 23466778887 8999999996 699998888754 67888888877664
No 162
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=97.23 E-value=0.00057 Score=55.78 Aligned_cols=107 Identities=16% Similarity=0.275 Sum_probs=73.2
Q ss_pred cCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHH
Q 036413 123 YRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSEC 201 (346)
Q Consensus 123 f~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg 201 (346)
|+-..++ -..+|.+++..+ ..+++++|+++.+||.+|+.|. +.+.++-+ -.+..|..++++ ..
T Consensus 2 ~G~v~~i-t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d------~~-- 65 (118)
T 3evi_A 2 FGELREI-SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVN------SC-- 65 (118)
T ss_dssp CCSCEEC-CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGG------GT--
T ss_pred CcceEEe-CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhH------Hh--
Confidence 3333443 455677666433 2356999999999999999995 55555544 024678888888 32
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCCh--HH-HHHHHHHHHHcC
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDP--VS-LLEDLLSFMESG 250 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~--~~-~i~~L~~fl~~~ 250 (346)
+..|++.+.|++++.- .|+.+.++.|..+- .+ -.+.|..+|.+.
T Consensus 66 ---~~~~~v~~~PT~~~fk--~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 66 ---IQHYHDNCLPTIFVYK--NGQIEAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp ---STTCCGGGCSEEEEEE--TTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred ---HHHCCCCCCCEEEEEE--CCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 5789999999999997 69999999885421 11 245666666553
No 163
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.22 E-value=0.00097 Score=58.08 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=66.1
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+|+++|++. .+||..|...-..+ .....+|-. .++.++.++.+ +++
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~l~~~~~~-~~v~vv~Is~d------~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAF--DKRVKDFHE-KGFNVIGVSID------SEQVHFAWKNTPVEKGGIGQVSFPMV 102 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCCCSSCEE
T ss_pred CCCcEEEEEECCCCCCchHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHHhhhhcccccCceeEEE
Confidence 6899999999 89999997663322 111222333 57888888877 322
Q ss_pred ---HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 201 ---CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 201 ---g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
...++..|++. .+|++.|||+ .|+.+..+.|.. +++++++.|....
T Consensus 103 ~d~~~~~~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 103 ADITKSISRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp ECTTSHHHHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred ECCchHHHHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 24567788887 8999999997 699998888855 5667777766654
No 164
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=97.22 E-value=0.0013 Score=58.29 Aligned_cols=100 Identities=10% Similarity=0.230 Sum_probs=71.9
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhh
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGY 207 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~ 207 (346)
+-..+|++++. .+|.++|++.++||..|+.+...+ ..+.+-++.. ++.|..++.+ .. ..++..
T Consensus 135 ~~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~------~~--~~l~~~ 199 (241)
T 3idv_A 135 LTKENFDEVVN----DADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDAT------AE--TDLAKR 199 (241)
T ss_dssp CCTTTHHHHHH----HCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETT------TC--HHHHHH
T ss_pred ccHHHHHHhhc----cCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECC------CC--HHHHHH
Confidence 34567777763 467999999999999999884322 2233333302 2788888777 22 468999
Q ss_pred cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
|++..+|++.++.. |+.+. ..|..+.+.+++.|.+.+
T Consensus 200 ~~v~~~Pt~~~~~~--g~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 200 FDVSGYPTLKIFRK--GRPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp TTCCSSSEEEEEET--TEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred cCCcccCEEEEEEC--CeEEE-ecCCCCHHHHHHHHHhhh
Confidence 99999999999983 77665 789888887777776654
No 165
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.21 E-value=0.0017 Score=54.26 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=64.8
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC--CCCCC-hHHHHH-Hhhc-----------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD--DDDDD-SECRKV-CGYY----------- 208 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~--~~~~~-~eg~~~-~~~y----------- 208 (346)
-.+||+||++-.+||..|...-..+ ++...+|-. .++.++.++.+.. ...++ .+...+ ...|
T Consensus 29 ~~gk~vlv~f~a~~C~~C~~~~~~l--~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 105 (169)
T 2v1m_A 29 YRGHVCLIVNVACKCGATDKNYRQL--QEMHTRLVG-KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIK 105 (169)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCC
T ss_pred cCCCEEEEEEeeccCCchHHHHHHH--HHHHHHhhc-CCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEe
Confidence 3589999999999999996553222 111222222 4688888776510 00001 223334 1222
Q ss_pred ------------------C-----CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 209 ------------------K-----LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 209 ------------------~-----~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
+ +..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 168 (169)
T 2v1m_A 106 VNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLEK 168 (169)
T ss_dssp CSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred ecCccccHHHHHHHhhcCCccCCcccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 2 233589999996 699999999988999888888887753
No 166
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=97.20 E-value=0.0013 Score=62.60 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=69.6
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCcccccccccc------CCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDT------WADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC 205 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdv------w~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~ 205 (346)
..+|++++ ++++.+||++.++||. |+.+.... | +.+.+.++..++.|..++.+ .. ..++
T Consensus 18 ~~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~--~~~a~~~~~~~v~~~~Vd~~------~~--~~l~ 82 (350)
T 1sji_A 18 EKNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVL--ELVAQVLEHKDIGFVMVDAK------KE--AKLA 82 (350)
T ss_dssp HHHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHH--HHHHHHGGGSSEEEEEEETT------TT--HHHH
T ss_pred HHHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHH--HHHHHHHhhcCcEEEEEeCC------CC--HHHH
Confidence 44576665 4579999999999999 86663321 3 24556666136999999888 32 5699
Q ss_pred hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
+.|++..||++.++. .|+ .....|..+.+.+++.|.+
T Consensus 83 ~~~~v~~~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~ 119 (350)
T 1sji_A 83 KKLGFDEEGSLYVLK--GDR-TIEFDGEFAADVLVEFLLD 119 (350)
T ss_dssp HHHTCCSTTEEEEEE--TTE-EEEECSCCCHHHHHHHHHT
T ss_pred HhcCCCccceEEEEE--CCc-EEEecCCCCHHHHHHHHHH
Confidence 999999999999994 577 5577898887766655543
No 167
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=97.20 E-value=0.00028 Score=57.82 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=62.2
Q ss_pred HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-----------------
Q 036413 141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE----------------- 200 (346)
Q Consensus 141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e----------------- 200 (346)
.+.-.+|++||++-.+||..|.... +.+.++.+ +.++.++.++.+. +.+
T Consensus 27 l~~~~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~~ 95 (143)
T 4fo5_A 27 FHNQLGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDE-----KESIFTETVKIDKLDLSTQF 95 (143)
T ss_dssp SCCSSCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCS-----CHHHHHHHHHHHTCCGGGEE
T ss_pred HHHhCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccC-----CHHHHHHHHHHhCCCCceee
Confidence 3344689999999999999998774 55555554 2468888888772 111
Q ss_pred ------HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 201 ------CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 201 ------g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
...++..|++..+|++.|||+ .|+.+.+. +.++++.+.|
T Consensus 96 ~d~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l 140 (143)
T 4fo5_A 96 HEGLGKESELYKKYDLRKGFKNFLIND-EGVIIAAN---VTPEKLTEIL 140 (143)
T ss_dssp ECTTGGGSHHHHHTTGGGCCCEEEECT-TSBEEEES---CCHHHHHHHH
T ss_pred ecccccchHHHHHcCCCCCCcEEEECC-CCEEEEcc---CCHHHHHHHH
Confidence 135778899999999999997 68887664 3455444433
No 168
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.20 E-value=0.00083 Score=66.53 Aligned_cols=102 Identities=14% Similarity=0.228 Sum_probs=76.0
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhh
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGY 207 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~ 207 (346)
+-..+|+++. ...+|.+||++.++||..|+.+...+ ..+.+.+. . +++|..++.+ .. .++..
T Consensus 357 ~~~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~-~~~~v~~~~id~~------~~---~~~~~ 420 (481)
T 3f8u_A 357 VVAENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLS-KDPNIVIAKMDAT------AN---DVPSP 420 (481)
T ss_dssp ECTTTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTT-TCSSEEEEEEETT------SS---CCCTT
T ss_pred ecccCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhc-cCCCEEEEEEECC------ch---hhHhh
Confidence 4456777665 45789999999999999999996443 44555555 4 7999999888 33 46778
Q ss_pred cCCCCCceEEEEeCCCCc-eEEEEeCCCChHHHHHHHHHHHH
Q 036413 208 YKLDSLPVVLVIDPITGE-KMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 208 y~~~~~P~i~iidp~tge-~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
|++..+|++.+++. .|+ ......|..+.++|++.|.+.+.
T Consensus 421 ~~v~~~Pt~~~~~~-~~~~~~~~~~G~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 421 YEVRGFPTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREAT 461 (481)
T ss_dssp CCCCSSSEEEEECT-TCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred CCCcccCEEEEEeC-CCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence 99999999999984 344 26677898888877777766543
No 169
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.20 E-value=0.0012 Score=56.84 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=67.5
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+|++||++. .+||..|...-..+ +....+|=. .++.++.++.+ +++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~-~~v~vv~vs~d------~~~~~~~~~~~~~~~~~~~~~~~~d~ 100 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDV--QKEYAELKK-LGVEVYSVSTD------THFVHKAWHENSPAVGSIEYIMIGDP 100 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHHSCHHHHTCCSEEEECT
T ss_pred CCCCEEEEEECCCCCcchHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHHHhccccCCCceEEECC
Confidence 5799999999 99999998653222 111222223 47888888877 321
Q ss_pred HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHHH
Q 036413 201 CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFME 248 (346)
Q Consensus 201 g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl~ 248 (346)
...++..|++. .+|++.|||+ .|..+..+.|.. +++++++.|.....
T Consensus 101 ~~~~~~~~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 101 SQTISRQFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKAAQY 157 (187)
T ss_dssp TCHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred chHHHHHhCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 24566778887 8999999996 699998888854 67888888887664
No 170
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.19 E-value=0.00069 Score=64.46 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=72.0
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
+-..+|++.. ...+|.+||++.++||..|+.+...+ ..+.+.++ ..++++..++.+ ... +..|
T Consensus 254 l~~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~------~~~----~~~~ 317 (361)
T 3uem_A 254 LVGKNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDST------ANE----VEAV 317 (361)
T ss_dssp ECTTTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETT------TCB----CSSC
T ss_pred eecCchhhhc---ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECC------ccc----hhhc
Confidence 3345677655 45689999999999999999985332 33444444 125999999888 333 6789
Q ss_pred CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
++..||++.++..-.|+.+....|..+.++|+ +||+.+
T Consensus 318 ~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~----~~l~~~ 355 (361)
T 3uem_A 318 KVHSFPTLKFFPASADRTVIDYNGERTLDGFK----KFLESG 355 (361)
T ss_dssp CCCSSSEEEEECSSSSCCCEECCSCSSHHHHH----HHHTTT
T ss_pred CCcccCeEEEEECCCCcceeEecCCCCHHHHH----HHHHhc
Confidence 99999999999754456677788988876554 455544
No 171
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.15 E-value=0.0009 Score=56.07 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=64.2
Q ss_pred hhcCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhc---c---CcEEEEEeecCCCCCCCChH-H-------------
Q 036413 143 SDENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIR---A---SNFIFWQVYDDDDDDDDDSE-C------------- 201 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~---~---~nFVfw~~~~~~~~~~~~~e-g------------- 201 (346)
.-.+||+||++-.+||.+ |.... +.+.++.+ + .++.++.++++. ..++++ .
T Consensus 32 ~~~gk~vll~f~~~~C~~~C~~~~------~~l~~~~~~~~~~~~~~v~vv~is~d~--~~d~~~~~~~~~~~~~~~~~~ 103 (172)
T 2k6v_A 32 QFQDKVVLLFFGFTRCPDVCPTTL------LALKRAYEKLPPKAQERVQVIFVSVDP--ERDPPEVADRYAKAFHPSFLG 103 (172)
T ss_dssp GSTTSEEEEEEECTTCSSHHHHHH------HHHHHHHTTSCHHHHTTEEEEEEESCT--TTCCHHHHHHHHHHHCTTEEE
T ss_pred HhCCCEEEEEEECCCCcchhHHHH------HHHHHHHHHhhhhccCCEEEEEEEECC--CCCCHHHHHHHHHHhCCCcEE
Confidence 346899999999999997 97663 44444443 1 168888888762 111222 1
Q ss_pred --------HHHHhhcCC---------------CCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHH
Q 036413 202 --------RKVCGYYKL---------------DSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLS 245 (346)
Q Consensus 202 --------~~~~~~y~~---------------~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~ 245 (346)
..+++.|++ ...|++.||| .|+.+..+.|.. +++++++.|.+
T Consensus 104 l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~ 170 (172)
T 2k6v_A 104 LSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQA 170 (172)
T ss_dssp ECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHH
Confidence 345555543 4679999999 699999988876 88888877765
No 172
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=97.07 E-value=0.0018 Score=62.48 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=75.1
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccC----CCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTW----ADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC 205 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw----~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~ 205 (346)
+-..+|++++ +.++++||+++.+||..| .+|+.+- .-+.+.+.++..++.|..++.+ . ...+|
T Consensus 18 lt~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~------~--~~~l~ 84 (367)
T 3us3_A 18 VNAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSE------K--DAAVA 84 (367)
T ss_dssp CCTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETT------T--THHHH
T ss_pred CCHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHHHHHHHHhhcCCceEEEEeCc------c--cHHHH
Confidence 4467898887 347999999999999876 5544110 1134555555136999999887 3 25699
Q ss_pred hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+.|++..||++.++. .|+. ....|..+.+.+++.|.+.+.
T Consensus 85 ~~~~V~~~PTl~~f~--~G~~-~~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 85 KKLGLTEEDSIYVFK--EDEV-IEYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp HHHTCCSTTEEEEEE--TTEE-EECCSCCSHHHHHHHHHHHHS
T ss_pred HHcCCCcCceEEEEE--CCcE-EEeCCCCCHHHHHHHHHHhcC
Confidence 999999999999998 4765 467898898888877776553
No 173
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=97.06 E-value=0.0019 Score=55.82 Aligned_cols=99 Identities=12% Similarity=0.182 Sum_probs=65.1
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCC---CCCCCChHHHHHHh-----------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDD---DDDDDDSECRKVCG----------- 206 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~---~~~~~~~eg~~~~~----------- 206 (346)
-++|++||++-.+||..|...- +.+.++. ++.++.++.++++. .+.+...+-.+++.
T Consensus 44 ~~Gk~vlv~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~ 117 (187)
T 3dwv_A 44 HKGSPLLIYNVASKCGYTKGGY------ETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMA 117 (187)
T ss_dssp GTTSCEEEEEECCBCSCCTTHH------HHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBC
T ss_pred hCCCEEEEEEecCCCCCcHHHH------HHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceee
Confidence 3689999999999999998753 2333332 22468888877651 00011122222222
Q ss_pred ----------------------hcCCCCCc---eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 207 ----------------------YYKLDSLP---VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 207 ----------------------~y~~~~~P---~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|.+..+| ++.|||+ .|..+..+.|..+++++.+.|.+.|..
T Consensus 118 ~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 118 KINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLGS 184 (187)
T ss_dssp CBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred ccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 22334677 9999997 699999999999999999888887764
No 174
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=97.03 E-value=0.0023 Score=55.43 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=65.5
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||++|++. .++|..|......+ ++...+|-. .++.++.++.+ +.+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~-~~v~vv~Is~d------~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDSFKE-RNVELLGCSVD------SKFTHLAWKKTPLSQGGIGNIKHTLI 100 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSEEE
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEEeC------CHHHHHHHHHhHHhhCCccCCCcCeE
Confidence 5799999999 99999998653222 112223333 67888888877 332
Q ss_pred ---HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 201 ---CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 201 ---g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
...++..|++. .+|++.|||+ .|..+..+.|.. +.+++++.|....
T Consensus 101 ~D~~~~~~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 101 SDISKSIARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp ECTTSHHHHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred ECCcHHHHHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 23577788887 8999999997 699888887743 3677777776654
No 175
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=97.01 E-value=0.00037 Score=55.56 Aligned_cols=85 Identities=9% Similarity=0.057 Sum_probs=57.6
Q ss_pred HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--HHHHHHhhcCCCCCc
Q 036413 137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS--ECRKVCGYYKLDSLP 214 (346)
Q Consensus 137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~--eg~~~~~~y~~~~~P 214 (346)
+++..|+..+|..+|++.++||..|+.+. +.+.++-+ .|-+.-++.+ .. +...++..|++..+|
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~------p~~~~~a~--~~~~v~~~~~------~~~~~~~~l~~~~~V~~~P 68 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQK------ELFGAAFD--QVPYVECSPN------GPGTPQAQECTEAGITSYP 68 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHHHH------HHHGGGGG--GSCEEESCTT------CTTSCCCHHHHHTTCCSSS
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHHHH------HHHHHHHH--hCCEEEEecc------cccchhHHHHHHcCCeEeC
Confidence 35566777778889999999999999983 33333333 3323334433 22 456789999999999
Q ss_pred eEEEEeCCCCceEEEEeCCCChHHHHHH
Q 036413 215 VVLVIDPITGEKMRKWCGMVDPVSLLED 242 (346)
Q Consensus 215 ~i~iidp~tge~l~~~~G~~~~~~~i~~ 242 (346)
++.| .|+. +.|..+.++|.+.
T Consensus 69 T~~i----~G~~---~~G~~~~~~l~~~ 89 (106)
T 3kp8_A 69 TWII----NGRT---YTGVRSLEALAVA 89 (106)
T ss_dssp EEEE----TTEE---EESCCCHHHHHHH
T ss_pred EEEE----CCEE---ecCCCCHHHHHHH
Confidence 9777 4763 6798887655443
No 176
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=97.01 E-value=0.0006 Score=48.97 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=39.9
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
..+.++|.+|+.. ||-+.+-+..+|+.++||++.|+..|-+.
T Consensus 4 ~~q~~mv~~~s~~-T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 4 PVQLELLNKLHLE-TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHH-HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5688999999999 99999999999999999999999999985
No 177
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=97.00 E-value=0.003 Score=54.07 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=68.6
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhh-cCCC--------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGY-YKLD-------- 211 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~-y~~~-------- 211 (346)
-.+|++||++-.+||..|...-..+ ..+.+-+++.++.++.++++.. +.+...+-.+++.. |++.
T Consensus 36 ~~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d 112 (180)
T 3kij_A 36 YKGKVSLVVNVASDCQLTDRNYLGL---KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIK 112 (180)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred cCCCEEEEEEEecCCCCcHHHHHHH---HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeee
Confidence 3689999999999999998753221 1222222325699999886510 01113445566666 4431
Q ss_pred ------------------CCce----EEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 212 ------------------SLPV----VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 212 ------------------~~P~----i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
..|. ..|||+ .|..+..+.|..+++++...|.+.|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~~ 171 (180)
T 3kij_A 113 ILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVRQ 171 (180)
T ss_dssp CSSTTCCHHHHHHHHHHTCCCSSTTCEEEECT-TSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred ccCccccHHHHHHHhcCCCCccccceEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 2566 899996 699999999988888888887777654
No 178
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=96.99 E-value=0.0023 Score=46.38 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=53.9
Q ss_pred EEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413 149 LLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR 228 (346)
Q Consensus 149 LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~ 228 (346)
..|++.++||..|+.+...+ +.+.+-.+ .++.+..++ + ..++..|++..+|++.+ .|+.+.
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~-~~~~~~~v~-~----------~~~~~~~~v~~~Pt~~~----~G~~~~ 62 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELG-IDAEFEKIK-E----------MDQILEAGLTALPGLAV----DGELKI 62 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTT-CCEEEEEEC-S----------HHHHHHHTCSSSSCEEE----TTEEEE
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcC-CceEEEEec-C----------HHHHHHCCCCcCCEEEE----CCEEEE
Confidence 45888889999999986444 44445555 678888775 3 46788999999999988 577665
Q ss_pred EEeCCC-ChHHHHHH
Q 036413 229 KWCGMV-DPVSLLED 242 (346)
Q Consensus 229 ~~~G~~-~~~~~i~~ 242 (346)
. |.. +.+++.+.
T Consensus 63 ~--G~~~~~~~l~~~ 75 (77)
T 1ilo_A 63 M--GRVASKEEIKKI 75 (77)
T ss_dssp C--SSCCCHHHHHHH
T ss_pred c--CCCCCHHHHHHH
Confidence 4 986 77766554
No 179
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=96.98 E-value=0.0046 Score=54.44 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=68.7
Q ss_pred hcCcEEEEEecCC-CCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413 144 DENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI 222 (346)
Q Consensus 144 ~~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~ 222 (346)
.+++.+||++.++ ||..|+.+.. +| +.+.+. . .++.|..++.+ .++...++..|++..+|++.|+.
T Consensus 20 ~~~~v~lv~f~~~~~C~~C~~~~~-~~--~~la~~-~-~~v~~~~vd~~------~~~~~~~~~~~~v~~~Pt~~~~~-- 86 (226)
T 1a8l_A 20 MVNPVKLIVFVRKDHCQYCDQLKQ-LV--QELSEL-T-DKLSYEIVDFD------TPEGKELAKRYRIDRAPATTITQ-- 86 (226)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHH-HH--HHHHTT-C-TTEEEEEEETT------SHHHHHHHHHTTCCSSSEEEEEE--
T ss_pred cCCCeEEEEEecCCCCchhHHHHH-HH--HHHHhh-C-CceEEEEEeCC------CcccHHHHHHcCCCcCceEEEEc--
Confidence 4567788999999 9999998842 22 123332 4 67889999988 87788999999999999999995
Q ss_pred CCceE-EEEeCCCChHHHHHHHHHHHH
Q 036413 223 TGEKM-RKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 223 tge~l-~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.|+.. ..+.|..+..++.+.+...+.
T Consensus 87 ~g~~~~~~~~G~~~~~~l~~~l~~~l~ 113 (226)
T 1a8l_A 87 DGKDFGVRYFGLPAGHEFAAFLEDIVD 113 (226)
T ss_dssp TTBCCSEEEESCCCTTHHHHHHHHHHH
T ss_pred CCceeeEEEeccCcHHHHHHHHHHHHh
Confidence 36543 567787777777666666553
No 180
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=96.97 E-value=0.0024 Score=57.07 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=67.1
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||+||++. ..+|+.|...-..+ .+...+|-+ .++.++.++.+ +.+
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~~l--~~l~~~~~~-~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~fp~l 125 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHD-VNCEVVAVSVD------SHFSHLAWINTPRKNGGLGHMNIALL 125 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSEEE
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHHHHHHhCCCcCCceEEE
Confidence 4699999999 99999998653222 122233333 68888888877 321
Q ss_pred ---HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHHH
Q 036413 201 ---CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFME 248 (346)
Q Consensus 201 ---g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl~ 248 (346)
...++..|++. .+|++.|||+ .|..+..+.|.. +.+++++.|.....
T Consensus 126 ~D~~~~i~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 126 SDLTKQISRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQF 185 (220)
T ss_dssp ECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred ECCcHHHHHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 24577788887 8999999997 699888877743 45788887776653
No 181
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=96.97 E-value=0.0031 Score=55.86 Aligned_cols=88 Identities=6% Similarity=0.032 Sum_probs=67.0
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
...+++++|++.++||..|+.+. +.+.++.++ .++.|..++.+ . ...++..|++..+|++.+
T Consensus 133 ~~~~~~~~v~F~a~wC~~C~~~~------~~~~~~~~~~~~v~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~--- 195 (229)
T 2ywm_A 133 VVDIPIEIWVFVTTSCGYCPSAA------VMAWDFALANDYITSKVIDAS------E--NQDLAEQFQVVGVPKIVI--- 195 (229)
T ss_dssp TCCSCEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEEGG------G--CHHHHHHTTCCSSSEEEE---
T ss_pred hcCCCeEEEEEECCCCcchHHHH------HHHHHHHHHCCCeEEEEEECC------C--CHHHHHHcCCcccCEEEE---
Confidence 34567779999999999999885 444444440 26888888766 2 356889999999999998
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|+ +..+.|..+.++|.+.|.+.+..
T Consensus 196 -~G~-~~~~~G~~~~~~l~~~l~~~~~~ 221 (229)
T 2ywm_A 196 -NKG-VAEFVGAQPENAFLGYIMAVYEK 221 (229)
T ss_dssp -GGG-TEEEESCCCHHHHHHHHHHHHHH
T ss_pred -CCE-EEEeeCCCCHHHHHHHHHHHhhh
Confidence 477 56688999998888888887754
No 182
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=96.96 E-value=0.0018 Score=56.77 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=65.9
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||+||++. .++|+.|......+ ++...+|-+ .++.++.++.+ +.+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l--~~l~~~~~~-~~v~vi~Is~D------~~~~~~~~~~~~~~~~~~~~~~~p~l 105 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSD-IGCEVLACSMD------SEYSHLAWTSIERKRGGLGQMNIPIL 105 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSSCEE
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHHHhhCCCCCCceeEE
Confidence 5799999999 99999998664321 112223333 57888888887 322
Q ss_pred ---HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 201 ---CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 201 ---g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
...++..|++. .+|++.|||+ .|..+..+.|.. +.+++++.|....
T Consensus 106 ~D~~~~~~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 106 ADKTKCIMKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp ECTTCHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred ECCchHHHHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 23566778887 8999999997 699888877743 4577887777654
No 183
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=96.95 E-value=0.001 Score=57.93 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=65.5
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||+||++. .+||..|...-..+ ++...+|-. .++.++.++.+ +.+
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~l~~~~~~-~~v~vv~Is~d------~~~~~~~~~~~~~~~~~~~~~~~p~l 103 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIAF--SNRAEDFRK-LGCEVLGVSVD------SQFTHLAWINTPRKEGGLGPLNIPLL 103 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSCEE
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHHHHHhhCCCCCCceEEE
Confidence 5799999999 99999998764322 111222323 57888888887 332
Q ss_pred ---HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 201 ---CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 201 ---g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
...++..|++. .+|++.|||+ .|..+..+.|.. +.++++..|....
T Consensus 104 ~D~~~~~~~~~gv~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~e~l~~l~~l~ 162 (197)
T 1qmv_A 104 ADVTRRLSEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAFQ 162 (197)
T ss_dssp ECTTCHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred ECCcHHHHHHcCCccCCCCceeeEEEEECC-CCcEEEEEeCCCCCCCCHHHHHHHHHhcc
Confidence 23567778886 7999999997 699888887743 4577777766543
No 184
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.90 E-value=0.0023 Score=45.12 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=38.1
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
..-.++|.+.+++ +-.+.+.|+..|.+++||++.||+..|++.
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556789999999 666999999999999999999999998854
No 185
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=96.81 E-value=0.0033 Score=56.00 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=66.0
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||+||++. .++|+.|......+ ++...+|-+ .++.++.++.+ +++
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l--~~l~~~~~~-~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~fp~l 121 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDAFHE-RNVELLGCSVD------SKYTHLAWKKTPLAKGGIGNIKHTLL 121 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHSSCGGGTCCCSCSSEEE
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHHHhhCCccCCCceEE
Confidence 6799999999 99999998764322 122223333 67888888877 432
Q ss_pred ---HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 201 ---CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 201 ---g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
...++..|++. ..|++.|||+ .|+.+..+.|.. +.+++++.|....
T Consensus 122 ~D~~~~~~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 122 SDITKSISKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp ECTTSHHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred ECCchHHHHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 23566778887 7999999997 699888876643 4778888777654
No 186
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=96.76 E-value=0.0024 Score=54.80 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=59.4
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhhc------------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGYY------------ 208 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~y------------ 208 (346)
-.+||+||++-.+||..|......+ .+...+|-+ .++.++.++.+.. +.+...+..+++..|
T Consensus 45 ~~gk~vll~F~atwC~~C~~~~~~l--~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~ 121 (183)
T 2obi_A 45 YRGFVCIVTNVASQCGKTEVNYTQL--VDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICV 121 (183)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCC
T ss_pred cCCCEEEEEEeCCCCCCcHHHHHHH--HHHHHHHhc-CCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeecc
Confidence 3589999999999999997653222 111222222 4688888776410 001112233333322
Q ss_pred -------------------C-----CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 209 -------------------K-----LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 209 -------------------~-----~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
. +...|++.|||+ .|+.+..+.|..+++++.+.|.
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~ 180 (183)
T 2obi_A 122 NGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLP 180 (183)
T ss_dssp SSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSG
T ss_pred CCcchhHHHHHhhccCCCCCcccccccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHH
Confidence 1 223599999996 6999999999888887765554
No 187
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=96.73 E-value=0.006 Score=53.37 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=67.0
Q ss_pred hcCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhcc---CcEEEEEeecCCCCCCCC---------------------
Q 036413 144 DENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRA---SNFIFWQVYDDDDDDDDD--------------------- 198 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~---~nFVfw~~~~~~~~~~~~--------------------- 198 (346)
-.+||+||++-.+||.. |......+ ..+.+-+.+ .++.++.++++. ..++
T Consensus 39 ~~Gk~vlv~F~at~C~~vC~~~~~~l---~~l~~~~~~~~~~~v~vv~Is~D~--~~d~~~~~~~~~~~~~~~~~~l~~~ 113 (200)
T 2b7k_A 39 LLGKFSIIYFGFSNCPDICPDELDKL---GLWLNTLSSKYGITLQPLFITCDP--ARDSPAVLKEYLSDFHPSILGLTGT 113 (200)
T ss_dssp GTTSCEEEEEECTTCCSHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEESCT--TTCCHHHHHHHHTTSCTTCEEEECC
T ss_pred cCCCEEEEEEECCCCcchhHHHHHHH---HHHHHHHHHhhCCceEEEEEECCC--CCCCHHHHHHHHHHcCCCceEEeCC
Confidence 35899999999999997 97653211 111111220 367777776651 0011
Q ss_pred -hHHHHHHhhcCCC-CC---------------ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413 199 -SECRKVCGYYKLD-SL---------------PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 199 -~eg~~~~~~y~~~-~~---------------P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~ 252 (346)
.+...++..|++. .. |++.|||+ .|+.+..+.|..+++.+.+.|.+.+.....
T Consensus 114 ~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l~~ 183 (200)
T 2b7k_A 114 FDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSYVP 183 (200)
T ss_dssp HHHHHHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHhhh
Confidence 1234567777775 33 37899997 699999988888889999999999876543
No 188
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.71 E-value=0.00092 Score=70.45 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=67.0
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~ 211 (346)
..+|++++ +.++.+||+++++||..|+.|...+ +.+.+-+. ..+.|..++.++ . ..++..|++.
T Consensus 123 ~~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~-~~v~~~~vd~~~------~--~~l~~~~~v~ 186 (780)
T 3apo_A 123 RREFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVD-GLLRIGAVNCGD------D--RMLCRMKGVN 186 (780)
T ss_dssp HHHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETTT------C--SSCC------
T ss_pred hHhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhc-CceEEEEEeCCC------c--HHHHHHcCCc
Confidence 44567666 6789999999999999999996533 45556666 678898988872 2 4688999999
Q ss_pred CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
.||++.++. .|+.+....|..+.+.+.+.|.+.
T Consensus 187 ~~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~l~~~ 219 (780)
T 3apo_A 187 SYPSLFIFR--SGMAAVKYNGDRSKESLVAFAMQH 219 (780)
T ss_dssp --CEEEEEC--TTSCCEECCSCSCHHHHHHHHHTT
T ss_pred eeeeEEEEe--CCcEeeEecCCCCHHHHHHHHHHh
Confidence 999998884 588777888988877666655443
No 189
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=96.69 E-value=0.0071 Score=49.43 Aligned_cols=90 Identities=9% Similarity=0.083 Sum_probs=66.4
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC--CceEEEE
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS--LPVVLVI 219 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~--~P~i~ii 219 (346)
+..+.++|++..+ |.+|.++. +.+.++-+ ...+.|..++++ . ...++..|++.+ .|+++|+
T Consensus 21 ~~~~pv~v~f~a~-~~~c~~~~------p~l~~~A~~~~gk~~f~~vd~d------~--~~~~a~~~gi~~~~iPtl~i~ 85 (133)
T 2djk_A 21 SAGIPLAYIFAET-AEERKELS------DKLKPIAEAQRGVINFGTIDAK------A--FGAHAGNLNLKTDKFPAFAIQ 85 (133)
T ss_dssp HTTSCEEEEECSC-SSSHHHHH------HHHHHHHHSSTTTSEEEEECTT------T--TGGGTTTTTCCSSSSSEEEEE
T ss_pred cCCCCEEEEEecC-hhhHHHHH------HHHHHHHHHhCCeEEEEEEchH------H--hHHHHHHcCCCcccCCEEEEE
Confidence 4678899999988 78887662 44455444 146888888776 2 235889999988 9999999
Q ss_pred eCCCCceEEEEe--CCCChHHHHHHHHHHHHc
Q 036413 220 DPITGEKMRKWC--GMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 220 dp~tge~l~~~~--G~~~~~~~i~~L~~fl~~ 249 (346)
....|++. ... |.++.+.+.+.|..+++.
T Consensus 86 ~~~~g~~~-~~~~~g~~~~~~l~~fi~~~l~G 116 (133)
T 2djk_A 86 EVAKNQKF-PFDQEKEITFEAIKAFVDDFVAG 116 (133)
T ss_dssp CTTTCCBC-CCCSSSCCCHHHHHHHHHHHHHT
T ss_pred ecCcCccc-CCCCccccCHHHHHHHHHHHHcC
Confidence 85346664 444 989998888888888863
No 190
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=96.61 E-value=0.0071 Score=53.61 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=65.3
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCC---CCCCCChHHHHHHh------hcCC--
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDD---DDDDDDSECRKVCG------YYKL-- 210 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~---~~~~~~~eg~~~~~------~y~~-- 210 (346)
+.-++|++|||+-.+||.+|...-..+ ++...+|=. .++.++.++.+. .+.+...+..+|+. .|++
T Consensus 43 ~~~~Gk~vlv~FwatwC~~C~~e~p~l--~~l~~~~~~-~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~f 119 (208)
T 2f8a_A 43 GSLRGKVLLIENVASLGGTTVRDYTQM--NELQRRLGP-RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNF 119 (208)
T ss_dssp GGGTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSS
T ss_pred HHcCCCEEEEEEECCCCccHHHHHHHH--HHHHHHccC-CCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccce
Confidence 334689999999999999997632211 112222223 568888887651 01111133344443 2321
Q ss_pred ---------------------------------------------------CCCceEEEEeCCCCceEEEEeCCCChHHH
Q 036413 211 ---------------------------------------------------DSLPVVLVIDPITGEKMRKWCGMVDPVSL 239 (346)
Q Consensus 211 ---------------------------------------------------~~~P~i~iidp~tge~l~~~~G~~~~~~~ 239 (346)
...|+..|||+ .|+.+.++.|..+++++
T Consensus 120 p~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~-~G~i~~~~~g~~~~~~l 198 (208)
T 2f8a_A 120 MLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP-DGVPLRRYSRRFQTIDI 198 (208)
T ss_dssp EEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCGGGG
T ss_pred EEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC-CCcEEEEeCCCCCHHHH
Confidence 12388999996 79999999998899888
Q ss_pred HHHHHHHH
Q 036413 240 LEDLLSFM 247 (346)
Q Consensus 240 i~~L~~fl 247 (346)
.+.|...+
T Consensus 199 ~~~I~~ll 206 (208)
T 2f8a_A 199 EPDIEALL 206 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
No 191
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.60 E-value=0.0023 Score=45.35 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
.-+++|.+.+++ +-.+.+.+++.|.+++||++.||...|....
T Consensus 8 ~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 8 HFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 346789999999 7778888899999999999999999998654
No 192
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=96.59 E-value=0.0046 Score=54.95 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=68.0
Q ss_pred cCcE-EEEEecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCC--CCCh-------------------
Q 036413 145 ENKW-LLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDD--DDDS------------------- 199 (346)
Q Consensus 145 ~~K~-LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~--~~~~------------------- 199 (346)
.+|+ +||++-.+||..|...- +.+.++. ++.++.++.++.+.... .++.
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~------~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 130 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIR------EALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKD 130 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTH------HHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred CCCCeEEEEEECCCCccHHHHH------HHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEEC
Confidence 4776 99999999999997664 3333333 22569999998851000 0011
Q ss_pred HHHHHHhhcCCCCCceEEEEeCCCCceEEEEe---------CCCChHHHHHHHHHHHHcCCc
Q 036413 200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWC---------GMVDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~---------G~~~~~~~i~~L~~fl~~~~~ 252 (346)
....++..|++..+|++.|||+ .|+.+.... |..+.+++.+.|...+...+.
T Consensus 131 ~~~~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 191 (218)
T 3u5r_E 131 ASQSVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDV 191 (218)
T ss_dssp TTCHHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCC
T ss_pred CccHHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCC
Confidence 1346778899999999999996 688775421 234578888888888866544
No 193
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.59 E-value=0.0037 Score=41.88 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=35.1
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
..+.|.+.+++ |-+.+.|++.|.+++||++.|++..|++
T Consensus 4 ~e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 35789999999 7899999999999999999999988763
No 194
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=96.59 E-value=0.00093 Score=64.56 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=38.8
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
..++++.+|-+| |++|+..|..||+..+||||.|++.||+..
T Consensus 44 ~~~~~~~~f~~~-~~~~~~~~~~~l~~~~w~~~~~~~~~~~~~ 85 (362)
T 4gew_A 44 SDEQKLHEFAII-TATDEAFAQSILQDVDWDLKKALDVFYGSE 85 (362)
T ss_dssp CHHHHHHHHHHH-HTCCHHHHHHHTTSSSSCHHHHHHHHHHCG
T ss_pred chHHHHHHHHHH-hCCcHHHHHHHHhhcCchHHHHHHHHcCCc
Confidence 456799999999 999999999999999999999999999754
No 195
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.59 E-value=0.0032 Score=43.65 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=37.1
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
+..+++|.+.+++ |-+.+.|+..|.+++||++.|++..|++
T Consensus 6 ~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4567889999999 7899999999999999999999998874
No 196
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.58 E-value=0.0033 Score=43.02 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=35.2
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
-+++|.+.+++ +-.+.+.+++.|.+++||++.||...|+
T Consensus 7 ~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 7 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 46789999999 6678999999999999999999998885
No 197
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=95.59 E-value=0.00036 Score=58.14 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=58.3
Q ss_pred HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh-ccCcEEEEEeecCCCCCCCCh-HHHHHH-----------
Q 036413 139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI-RASNFIFWQVYDDDDDDDDDS-ECRKVC----------- 205 (346)
Q Consensus 139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i-~~~nFVfw~~~~~~~~~~~~~-eg~~~~----------- 205 (346)
...+.-++|++||++..+||..|..+...+ ......++- + .++.++.++.+. +. ...++.
T Consensus 26 ~~l~~~~gk~vll~f~a~~C~~C~~~~~~l-~~~l~~~~~~~-~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~ 98 (159)
T 2ls5_A 26 VTLSSLRGKVVMLQFTASWCGVCRKEMPFI-EKDIWLKHKDN-ADFALIGIDRDE-----PLEKVLAFAKSTGVTYPLGL 98 (159)
Confidence 344444789999999999999998764432 221222233 4 677787777662 11 123333
Q ss_pred -------hhcC--CCCCceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413 206 -------GYYK--LDSLPVVLVIDPITGEKMRKWCGMVDPVSLL 240 (346)
Q Consensus 206 -------~~y~--~~~~P~i~iidp~tge~l~~~~G~~~~~~~i 240 (346)
..|+ +..+|++.|||+ .|+.+..+.|. ++.++.
T Consensus 99 d~~~~~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~-~~~~l~ 140 (159)
T 2ls5_A 99 DPGADIFAKYALRDAGITRNVLIDR-EGKIVKLTRLY-NEEEFA 140 (159)
Confidence 4444 345999999996 69888887773 444433
No 198
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=96.56 E-value=0.0017 Score=55.75 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=63.3
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhh-cC----------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGY-YK---------- 209 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~-y~---------- 209 (346)
-.+|++||++-.+||..|...-..+ ++...+|-+ .++.++.++.+.. +.+...+..+++.. |+
T Consensus 47 ~~Gk~vlv~F~atwC~~C~~~~p~l--~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d 123 (181)
T 2p31_A 47 YRGSVSLVVNVASECGFTDQHYRAL--QQLQRDLGP-HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIA 123 (181)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred cCCCEEEEEEeccCCCCcHHHHHHH--HHHHHHhhc-CCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecc
Confidence 3689999999999999998653221 112222323 5688888877510 00112233445544 22
Q ss_pred -------------CCCCc-------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 210 -------------LDSLP-------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 210 -------------~~~~P-------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
+..+| ++.|||+ .|+.+..+.|..+++++.+.|.+.
T Consensus 124 ~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l 179 (181)
T 2p31_A 124 VTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAP-DGKVVGAWDPTVSVEEVRPQITAL 179 (181)
T ss_dssp CSSTTSCHHHHHHHHHHSCCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHTT
T ss_pred cCCccchhhhhhhhhcCCCccccceeEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 22357 8999996 699999999988888877776543
No 199
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.56 E-value=0.0035 Score=47.19 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=38.5
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
...+++|.+.+++ |-+.+.|+..|.+++||++.|++..|++..
T Consensus 27 ~~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 27 AASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4567899999999 799999999999999999999999998543
No 200
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=96.55 E-value=0.0035 Score=53.93 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=61.6
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhhcCC----------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGYYKL---------- 210 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~y~~---------- 210 (346)
-.+||+||++-.+||..|...-..+ ++...++-+ .++.++.++.+.. +.+...+..+++..|++
T Consensus 47 ~~Gk~vlv~F~atwC~~C~~~~~~l--~~l~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~ 123 (185)
T 2gs3_A 47 YRGFVCIVTNVASQGGKTEVNYTQL--VDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICV 123 (185)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBS
T ss_pred cCCCEEEEEEecCCCCchHHHHHHH--HHHHHHhhc-CCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeecc
Confidence 3679999999999999996543221 111222223 5688888876510 00111223444433322
Q ss_pred --------------------------CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413 211 --------------------------DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 211 --------------------------~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f 246 (346)
...|++.|||+ .|+.+..+.|..+++++.+.|.+.
T Consensus 124 ~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 124 NGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp SSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT-TSCEEEEECTTSCGGGGGGGHHHH
T ss_pred CChhhhHHHHHHHhhcccccccCCcccccceEEEECC-CCCEEEeeCCCCCHHHHHHHHHHh
Confidence 12489999996 699999999988888877776653
No 201
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=96.53 E-value=0.015 Score=48.64 Aligned_cols=98 Identities=10% Similarity=0.187 Sum_probs=60.7
Q ss_pred cCcEEEEEecCCCCc-cccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCCh-HHHHHHhh-------------
Q 036413 145 ENKWLLVNLQSPKEF-TSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDS-ECRKVCGY------------- 207 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f-~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~-eg~~~~~~------------- 207 (346)
.+|++||++-.+||. .|......+ ..+.+-+++. ++.++.++.+. ..+++ ...+++..
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~--~~d~~~~~~~~~~~~~~~~~~~~~l~d 106 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDP--ENDKPKQLKKFAANYPLSFDNWDFLTG 106 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCT--TTCCHHHHHHHHTTSCCCGGGEEEEBC
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCC--CCCCHHHHHHHHHHcCCCCcceEEEeC
Confidence 589999999999998 886542211 1222222212 37777777651 00011 11222221
Q ss_pred ------------------------cCCCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHHHHH
Q 036413 208 ------------------------YKLDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLSFME 248 (346)
Q Consensus 208 ------------------------y~~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~fl~ 248 (346)
|.+...|++.|||+ .|+.+..+.|.. +++++++.|.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 107 YSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp SCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 34456799999997 699999999965 47888888887653
No 202
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.48 E-value=0.0027 Score=66.89 Aligned_cols=117 Identities=10% Similarity=0.094 Sum_probs=82.3
Q ss_pred HHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC
Q 036413 118 NLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD 197 (346)
Q Consensus 118 ~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~ 197 (346)
.+...+.||.. ..-+-+.........+|.++|++..+||..|+.+...+ +.+.+-.+ .++.|..++.+
T Consensus 649 ~fi~~~~~~~v--~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~-~~~~~~~vd~~------ 716 (780)
T 3apo_A 649 SWGLGFLPQAS--IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIK-GKVRAGKVDCQ------ 716 (780)
T ss_dssp HHHHTTSCCCS--EEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTCEEEEEETT------
T ss_pred HHHhhhccccc--ccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCceEEEEECC------
Confidence 44444455532 23344444445567789999999999999999885433 44555555 68888888877
Q ss_pred ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeC----CCChHHHHHHHHHHHHcC
Q 036413 198 DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCG----MVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 198 ~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G----~~~~~~~i~~L~~fl~~~ 250 (346)
. ...++..|++..+|++.++. .|+.+....| ..+.+++.+.|.+.++..
T Consensus 717 ~--~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 717 A--YPQTCQKAGIKAYPSVKLYQ--YERAKKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp T--CHHHHHHTTCCSSSEEEEEE--EETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred C--CHHHHHhcCCCcCCEEEEEc--CCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 3 24588999999999999993 4766655555 478888988888887654
No 203
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=96.45 E-value=0.0016 Score=44.84 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=38.0
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
++..++|.+.+++ |-+...|++.|.+|+||++.|.+..|++.
T Consensus 2 ~~e~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 2 SQEKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp -CCHHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred cchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4567899999999 99999999999999999999999999854
No 204
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=96.39 E-value=0.0074 Score=52.03 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=59.2
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC---CCCCceEEE
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK---LDSLPVVLV 218 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~---~~~~P~i~i 218 (346)
.-.+|.++|++..+||.+|+.+. |.+.++.. -.++.|..++++ +...++..|. +.++|++.+
T Consensus 51 ~~~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--------~~~~~~~~~~~~~v~~iPt~i~ 116 (167)
T 1z6n_A 51 RIERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--------RAEDDLRQRLALERIAIPLVLV 116 (167)
T ss_dssp TCCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--------HHHHHTTTTTTCSSCCSSEEEE
T ss_pred HhCCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--------CCHHHHHHHHHcCCCCcCeEEE
Confidence 34579999999999999999883 55555543 135777776555 3455677776 899999999
Q ss_pred EeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 219 IDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 219 idp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
++. .|+.+.++.| .|..+...+.+
T Consensus 117 ~~~-~G~~~~~~g~--~p~~~~~~i~~ 140 (167)
T 1z6n_A 117 LDE-EFNLLGRFVE--RPQAVLDGGPQ 140 (167)
T ss_dssp ECT-TCCEEEEEES--SCHHHHHHCHH
T ss_pred ECC-CCCEEEEEcC--CCHHHHHhHHH
Confidence 995 5788777744 23444444433
No 205
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.37 E-value=0.0054 Score=43.00 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=36.2
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
.-.++|.+.+++ +-.+.+.|++.|.+++||++.||+..|.+
T Consensus 11 ~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 11 RFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 346799999999 65599999999999999999999988864
No 206
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=96.34 E-value=0.005 Score=54.98 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=61.0
Q ss_pred hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-------------------
Q 036413 144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE------------------- 200 (346)
Q Consensus 144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e------------------- 200 (346)
-.+|++||++- ++||..|...- +.+.++.+ +.++.++.++++ +.+
T Consensus 67 ~~Gk~vll~F~a~~wC~~C~~~~------p~l~~l~~~~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
T 3ztl_A 67 YRGKYVVLFFYPADFTFVCPTEI------IAFSDQVEEFNSRNCQVIACSTD------SQYSHLAWDNLDRKSGGLGHMK 134 (222)
T ss_dssp GTTSEEEEEECSCSSCSHHHHHH------HHHHHTHHHHHTTTEEEEEEESS------CHHHHHHHHHSCGGGTSCCSCS
T ss_pred hCCCeEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHhhhhccccccc
Confidence 36899999998 59999997753 33333332 257888888887 432
Q ss_pred -------HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCCC----hHHHHHHHH
Q 036413 201 -------CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMVD----PVSLLEDLL 244 (346)
Q Consensus 201 -------g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~~----~~~~i~~L~ 244 (346)
...++..|++. .+|++.|||+ .|..+..+.|... .+++++.|.
T Consensus 135 ~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~ 194 (222)
T 3ztl_A 135 IPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD 194 (222)
T ss_dssp SCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred eeEEeCCchHHHHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 12455667776 7899999997 6999888877533 455555554
No 207
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=96.33 E-value=0.031 Score=49.74 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=71.8
Q ss_pred cccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413 129 LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY 208 (346)
Q Consensus 129 l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y 208 (346)
++-.-+.+.+...-....+++++.+.+.++.+|..+- ..| ..|..-.+ .++.|.-++.+ ..+..++++.|
T Consensus 114 lv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~-~~~--~~vAk~~k-~~i~F~~vd~~------~~~~~~~l~~f 183 (227)
T 4f9z_D 114 MVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENM-HRY--QKAAKLFQ-GKILFILVDSG------MKENGKVISFF 183 (227)
T ss_dssp SEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHH-HHH--HHHHHHTT-TTCEEEEEETT------SGGGHHHHHHT
T ss_pred ceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHH-HHH--HHHHHHhh-CCEEEEEeCCc------cHhHHHHHHHc
Confidence 3445566666655555667777767677777776552 333 23444455 66777777766 55556788999
Q ss_pred CCC--CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 209 KLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 209 ~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
++. .+|.|+|++...+.+...-.|.++++.+.+-|..|++
T Consensus 184 gl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 184 KLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp TCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred CCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence 997 8999999997544344333467788877776666654
No 208
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.31 E-value=0.0057 Score=43.99 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=36.6
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
.-+++|.+.+++ +-.+.+.+++.|.+++||++.||+..|.+
T Consensus 16 ~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 16 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 346789999999 66789999999999999999999999875
No 209
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.31 E-value=0.0035 Score=48.32 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
.+++|.+.+++ |-+.+.|+..|.+++||++.|++..|.+.+.
T Consensus 29 ~ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 57899999999 8899999999999999999999999987653
No 210
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=96.28 E-value=0.013 Score=51.43 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=64.9
Q ss_pred HHHHhhcCCCccc-ccccCHHHHHHHhhhcCcEEEEEecC-------CCCccccccccccCCCHHHHHHhc--c-----C
Q 036413 117 NNLASLYRPPVDL-MFNGSFEKAKDVGSDENKWLLVNLQS-------PKEFTSHTLNRDTWADEAVSQTIR--A-----S 181 (346)
Q Consensus 117 ~~l~~lf~PP~~l-~~~gsf~~A~~~Ak~~~K~LlV~l~~-------~~~f~c~~lnRdvw~~~~V~~~i~--~-----~ 181 (346)
..|..+-.+...+ +-..+|++.+. ...+.++||.+.. .||..|++|. +.+.++-+ . .
T Consensus 9 ~~l~~l~~~~~vi~lt~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~------P~~e~lA~~~~~~~~~~ 80 (178)
T 3ga4_A 9 DDILQLKDDTGVITVTADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFE------KTYHAVADVIRSQAPQS 80 (178)
T ss_dssp HHHHTTCCTTSEEECCTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHH------HHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhccCCCEECCHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHH------HHHHHHHHHhhhccCCC
Confidence 3455555444344 45778997542 4567899999988 4999999993 44444333 1 4
Q ss_pred cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413 182 NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI 222 (346)
Q Consensus 182 nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~ 222 (346)
+.+|..+|++ ++..++..|++.++|+|.++-+-
T Consensus 81 ~v~f~kvD~d--------~~~~la~~~~I~siPtl~~F~~g 113 (178)
T 3ga4_A 81 LNLFFTVDVN--------EVPQLVKDLKLQNVPHLVVYPPA 113 (178)
T ss_dssp CEEEEEEETT--------TCHHHHHHTTCCSSCEEEEECCC
T ss_pred CEEEEEEECc--------cCHHHHHHcCCCCCCEEEEEcCC
Confidence 6788888877 35789999999999999999974
No 211
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=96.25 E-value=0.0054 Score=61.62 Aligned_cols=105 Identities=8% Similarity=0.048 Sum_probs=69.9
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-------cEEEEEeecCCCCCCCChHHHH
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-------NFIFWQVYDDDDDDDDDSECRK 203 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-------nFVfw~~~~~~~~~~~~~eg~~ 203 (346)
-..+|++++ +...+|.+||++..+||..|+.+...+ +.+.+-+... ++.|..++.+ .. ..
T Consensus 29 t~~~F~~~l--~~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d------~~--~~ 95 (470)
T 3qcp_A 29 SGDDFSRVH--RVAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCA------SE--VD 95 (470)
T ss_dssp SCSCGGGTC--TTGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETT------TC--HH
T ss_pred CHHHHHHHH--HhCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECC------CC--HH
Confidence 345676554 335678999999999999999995332 2233322201 3899999888 32 57
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEE------------eCCCChHHHHHHHHHHHH
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKW------------CGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~------------~G~~~~~~~i~~L~~fl~ 248 (346)
++..|++..||++.++++..+.....+ ...++.+++...+...+.
T Consensus 96 la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Lin 152 (470)
T 3qcp_A 96 LCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVN 152 (470)
T ss_dssp HHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 899999999999999986433222122 234677777776666653
No 212
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=96.23 E-value=0.051 Score=48.17 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=65.6
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHh------hcCCC-
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCG------YYKLD- 211 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~------~y~~~- 211 (346)
+.=++|++|||+-.+||.+|..+. ++ ++.-.+|=. .++.+++++.+.. +.+...+-..++. .|++.
T Consensus 34 s~~kGKvvll~F~At~C~~c~e~p-~L--~~l~~~~~~-~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~f 109 (207)
T 2r37_A 34 KQYAGKYVLFVNVASYGGLTGQYI-EL--NALQEELAP-FGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNF 109 (207)
T ss_dssp GGGTTSEEEEEEECSSSTTTTHHH-HH--HHHHHHHGG-GTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSS
T ss_pred HHhCCCEEEEEEeCCCCCChHHHH-HH--HHHHHHhcc-CCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccc
Confidence 444689999999999999995442 11 112222333 5788888875410 0011123344555 44321
Q ss_pred ------------------------------------------------CCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 212 ------------------------------------------------SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 212 ------------------------------------------------~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
--|+..|||+ .|+.+.+|.|.++++++...|
T Consensus 110 p~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~-~G~i~~~~~g~~~~~~l~~~I 188 (207)
T 2r37_A 110 QLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGP-DGIPIMRWHHRTTVSNVKMDI 188 (207)
T ss_dssp EEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHH
T ss_pred eeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECC-CCcEEEEECCCCCHHHHHHHH
Confidence 0167899996 799999999988999988888
Q ss_pred HHHHHc
Q 036413 244 LSFMES 249 (346)
Q Consensus 244 ~~fl~~ 249 (346)
...+..
T Consensus 189 ~~ll~~ 194 (207)
T 2r37_A 189 LSYMRR 194 (207)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887754
No 213
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=96.20 E-value=0.016 Score=52.56 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=63.3
Q ss_pred cCcEEEEEecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
.++..+|++.++||..|+.+...+ ..+.... ...++.+..++.+ . ...++..|++.++|++.|
T Consensus 137 ~~~~~vv~F~a~wC~~C~~~~p~l---~~la~~~~~~~~~~v~~~~vd~~------~--~~~~~~~~~V~~vPt~~i--- 202 (243)
T 2hls_A 137 KGRVHIETIITPSCPYCPYAVLLA---HMFAYEAWKQGNPVILSEAVEAY------E--NPDIADKYGVMSVPSIAI--- 202 (243)
T ss_dssp CSCEEEEEEECSSCSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEEETT------T--CHHHHHHTTCCSSSEEEE---
T ss_pred CCCcEEEEEECCCCCCcHHHHHHH---HHHHHHcccccCCcEEEEEEECc------c--CHHHHHHcCCeeeCeEEE---
Confidence 477889999999999998874221 1111111 0036888888777 2 235788899999999988
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.|+.+ ..|..+.++|++.|.+.+..
T Consensus 203 -~G~~~--~~G~~~~~~l~~~l~~~~~~ 227 (243)
T 2hls_A 203 -NGYLV--FVGVPYEEDFLDYVKSAAEG 227 (243)
T ss_dssp -TTEEE--EESCCCHHHHHHHHHHHHTT
T ss_pred -CCEEE--EeCCCCHHHHHHHHHHHhhc
Confidence 47753 78999999999988888754
No 214
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=96.14 E-value=0.0026 Score=63.47 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=69.5
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYK 209 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~ 209 (346)
..+|++.. ...+|.+||++.++||..|+.+...+ ..+.+-+. ..++++..++.+ ..+ ... |+
T Consensus 365 ~~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~------~~~---~~~-~~ 428 (504)
T 2b5e_A 365 GKNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHT------END---VRG-VV 428 (504)
T ss_dssp TTTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGG------GCC---CSS-CC
T ss_pred cccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCC------ccc---ccc-CC
Confidence 44576654 45689999999999999999995432 12222221 148999999877 322 233 99
Q ss_pred CCCCceEEEEeCCCCce--EEEEeCCCChHHHHHHHHHHHH
Q 036413 210 LDSLPVVLVIDPITGEK--MRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~--l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+..||++.++ + .|+. .....|..+.+.|++.|.+.+.
T Consensus 429 v~~~Pt~~~~-~-~G~~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 429 IEGYPTIVLY-P-GGKKSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp CSSSSEEEEE-C-CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred ceecCeEEEE-e-CCceecceEecCCCCHHHHHHHHHhcCC
Confidence 9999999999 3 5765 5567898888877777776543
No 215
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=96.11 E-value=0.0081 Score=48.54 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=37.7
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
+++|.+.+++ +-.+.+.+++.|.+++||++.||+..|+.+.
T Consensus 67 ~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 6799999999 7789999999999999999999999998653
No 216
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=95.10 E-value=0.00093 Score=54.10 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=52.4
Q ss_pred cCc-EEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCC------------------ChHHHH
Q 036413 145 ENK-WLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDD------------------DSECRK 203 (346)
Q Consensus 145 ~~K-~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~------------------~~eg~~ 203 (346)
.+| ++||++.++||..|+.+...+ ..+.+-++ ..++.+..++.+. +.+. ......
T Consensus 24 ~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (143)
T 2lus_A 24 KDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDR-SEDDMFQYMMESHGDWLAIPYRSGPASN 99 (143)
Confidence 467 999999999999998875443 11222221 0366677776662 0000 011246
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
++..|++..+|++.|||+ .|+.+..
T Consensus 100 ~~~~~~v~~~P~~~lid~-~G~i~~~ 124 (143)
T 2lus_A 100 VTAKYGITGIPALVIVKK-DGTLISM 124 (143)
Confidence 788899999999999997 5887765
No 217
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.09 E-value=0.011 Score=44.60 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=38.0
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
.-+++|.+.+++ +-.+.+.+++.|.+++||++.||+..|....
T Consensus 28 ~ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 28 RYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp TSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 346789999999 6678999999999999999999999998653
No 218
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.04 E-value=0.01 Score=43.36 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
..+++|.+.+++ |-+.+.|++.|.+++||++.|++..|++..
T Consensus 8 ~~~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 8 VDEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp SCHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 356789999999 889999999999999999999999998653
No 219
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=96.03 E-value=0.016 Score=48.17 Aligned_cols=93 Identities=12% Similarity=0.268 Sum_probs=57.0
Q ss_pred cCcEEEEEecC-CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HH------------------HH
Q 036413 145 ENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CR------------------KV 204 (346)
Q Consensus 145 ~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~------------------~~ 204 (346)
.+||++|++.. ++|..|...-..+ ++...+|=. .++.++.++.+ +++ .. .+
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~~l--~~~~~~~~~-~~~~vv~vs~d------~~~~~~~~~~~~~~~~~~~~d~~~~~ 104 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGLDF--NALLPEFDK-AGAKILGVSRD------SVKSHDNFCAKQGFAFPLVSDGDEAL 104 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHH--HHHHHHHHH-TTCEEEEEESS------CHHHHHHHHHHHCCSSCEEECTTCHH
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHhCCCceEEECCcHHH
Confidence 57899999986 8999887653222 112222223 56888888777 443 22 34
Q ss_pred HhhcCCCC------------CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 205 CGYYKLDS------------LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 205 ~~~y~~~~------------~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
+..|++.. .|++.|||+ .|..+..+.|. .+...++.+.+.++
T Consensus 105 ~~~~~v~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~-~~~~~~~~il~~l~ 158 (163)
T 3gkn_A 105 CRAFDVIKEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKV-KVAGHADAVLAALK 158 (163)
T ss_dssp HHHTTCEEEEEETTEEEEEECCEEEEECT-TSCEEEEECSC-CSTTHHHHHHHHHH
T ss_pred HHHhCCccccccccccccCcceEEEEECC-CCeEEEEEcCC-CcccCHHHHHHHHH
Confidence 45565544 899999997 69988888653 33333444444443
No 220
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=96.03 E-value=0.015 Score=53.60 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=63.9
Q ss_pred cCcEEE-EEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLL-VNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~Ll-V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||++ +++-.++|+.|...-..+ +....+|-+ .++.++.++++ +.+
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~~l--~~l~~ef~~-~gv~VI~VS~D------s~~~~~~w~~~~~~~~~~~i~fPil~ 102 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQR-LGVDLIGLSVD------SVFSHIKWKEWIERHIGVRIPFPIIA 102 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHHHHHHHTCCCCCSCEEE
T ss_pred CCCEEEEEEEcCCCCcChHHHHHHH--HHHHHHHHh-CCcEEEEEECC------CHHHHHHHHHHHHHhcCCCCceeEEE
Confidence 578864 566788999997653221 122233334 68999999887 433
Q ss_pred --HHHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 201 --CRKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 201 --g~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
...++..|++. .+|.+.|||| .|.....+.|.. +.++++..|....
T Consensus 103 D~~~~ia~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~~~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 103 DPQGTVARRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALK 161 (249)
T ss_dssp CTTSHHHHHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred CCchHHHHHhCCccccCCCcccceEEEECC-CCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence 23567778875 8999999998 588887776643 5788887777654
No 221
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=95.90 E-value=0.0096 Score=43.27 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=37.1
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
+++..|..|+-- ||+++-.||.+|+--||||..|++.|=.
T Consensus 16 dmdavls~fvrs-tgaepgLaRDlleGKnWDl~AAL~D~eq 55 (73)
T 2l2d_A 16 DMDAVLSDFVRS-TGAEPGLARDLLEGKNWDLTAALSDYEQ 55 (73)
T ss_dssp CHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCcchhHHhhccCCccHhHHhhhHHH
Confidence 678899999999 8999999999999999999999998854
No 222
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=95.85 E-value=0.041 Score=46.64 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=63.0
Q ss_pred hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHH----------------
Q 036413 144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVC---------------- 205 (346)
Q Consensus 144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~---------------- 205 (346)
.++||+++++. +.||+.|..--..+ ++...+|-+ .++.++.++.+ +++ ..+++
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l--~~~~~~~~~-~~v~vv~is~d------~~~~~~~~~~~~~~~fp~l~D~~~~ 101 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTF--RDKMAQLEK-ANAEVLAISVD------SPWCLKKFKDENRLAFNLLSDYNRE 101 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEES--CCCGGGGGG-SSSEEEEEESS------CHHHHHHHHHHTTCCSEEEECTTSH
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhh--hhhHHHhhc-cCceEEEecCC------CHHHHHHHHHhcCcccceeecCchH
Confidence 36899999987 88999997643333 222334445 78888888877 544 23344
Q ss_pred --hhcCCC----------CCceEEEEeCCCCceEEEEeC-----CCChHHHHHHHHHHHH
Q 036413 206 --GYYKLD----------SLPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLLSFME 248 (346)
Q Consensus 206 --~~y~~~----------~~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~~fl~ 248 (346)
..|++- ..|.+.|||+ .|.....+.+ ..+.+++++.|.+...
T Consensus 102 v~~~ygv~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 102 VIKLYNVYHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp HHHHTTCEEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 344431 3577889997 6988777654 2467888888877554
No 223
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=95.81 E-value=0.032 Score=46.57 Aligned_cols=96 Identities=7% Similarity=0.019 Sum_probs=61.5
Q ss_pred cCcEEEEEecCCC-CccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCC------C--------h-HHHHHHhh
Q 036413 145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDD------D--------S-ECRKVCGY 207 (346)
Q Consensus 145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~------~--------~-eg~~~~~~ 207 (346)
.+||++|++-.+| |..|...- +.+.++.++ .++.++.++.+..+.-+ . . ....++..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~------~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 116 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQT------RRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA 116 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTH------HHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH
T ss_pred CCCeEEEEEecCCCCCchHHHH------HHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH
Confidence 4789999999988 99997653 333333320 25666666665100000 0 0 23456777
Q ss_pred cCCCC------CceEEEEeCCCCceEEEEeCC-----CChHHHHHHHHHHH
Q 036413 208 YKLDS------LPVVLVIDPITGEKMRKWCGM-----VDPVSLLEDLLSFM 247 (346)
Q Consensus 208 y~~~~------~P~i~iidp~tge~l~~~~G~-----~~~~~~i~~L~~fl 247 (346)
|++.. +|++.|||+ .|..+..+.|. .+.+++++.|.+.+
T Consensus 117 ~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 117 FGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp TTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 88754 599999997 69998888652 24578888887654
No 224
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.076 Score=47.42 Aligned_cols=103 Identities=10% Similarity=0.077 Sum_probs=66.3
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHh------hcCCC-
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCG------YYKLD- 211 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~------~y~~~- 211 (346)
+.=++|++|||+-.+||.+|..+. ++ ++...+|=. .+|.+++++.+.. +.+...+-..|+. .|++.
T Consensus 52 sd~~GKvvll~FwAt~C~~c~e~p-~L--~~l~~~~~~-~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~f 127 (215)
T 2i3y_A 52 KQYVGKHILFVNVATYCGLTAQYP-EL--NALQEELKP-YGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSF 127 (215)
T ss_dssp GGGTTSEEEEEEECSSSGGGGGHH-HH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSS
T ss_pred HHhCCCEEEEEEeCCCCCChHhHH-HH--HHHHHHhcc-CCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccc
Confidence 444689999999999999996442 11 122223333 6788888875410 0011123445555 44320
Q ss_pred ---------------------------------------------C---CceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413 212 ---------------------------------------------S---LPVVLVIDPITGEKMRKWCGMVDPVSLLEDL 243 (346)
Q Consensus 212 ---------------------------------------------~---~P~i~iidp~tge~l~~~~G~~~~~~~i~~L 243 (346)
. .|+..|||+ .|+.+.++.|.++++++.+.|
T Consensus 128 pll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~-~G~vv~~~~g~~~~~~l~~~I 206 (215)
T 2i3y_A 128 QLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGP-DGIPVMRWSHRATVSSVKTDI 206 (215)
T ss_dssp EEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHH
T ss_pred eeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECC-CCeEEEEeCCCCCHHHHHHHH
Confidence 0 167899996 799999999988999888888
Q ss_pred HHHHHc
Q 036413 244 LSFMES 249 (346)
Q Consensus 244 ~~fl~~ 249 (346)
...+..
T Consensus 207 ~~ll~~ 212 (215)
T 2i3y_A 207 LAYLKQ 212 (215)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 877653
No 225
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.75 E-value=0.016 Score=43.50 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=37.8
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
-..++|.+.+++ |-+.+.|++.|.+++||++.|++..|++..
T Consensus 28 ~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 28 IDQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp SCHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 346789999999 789999999999999999999999998654
No 226
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=95.72 E-value=0.027 Score=47.90 Aligned_cols=75 Identities=16% Similarity=0.042 Sum_probs=52.1
Q ss_pred cCcEEEEEecCCC-CccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH--------------------HHH
Q 036413 145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE--------------------CRK 203 (346)
Q Consensus 145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e--------------------g~~ 203 (346)
.+||+||++-..| |..|...- +.+.++.++.++.++.++.+ +++ ...
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~~~~l~D~~~~ 110 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKD------LPFAQKRFCGAEGTENVMPASAFRDS 110 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESS------CHHHHTTCC------CEEEEECTTSS
T ss_pred CCCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECC------CHHHHHHHHHHcCCCCceEeeCCHHH
Confidence 4789999999887 99997652 34444443246677777666 332 134
Q ss_pred HHhhcCCCCC---------ceEEEEeCCCCceEEEEeC
Q 036413 204 VCGYYKLDSL---------PVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 204 ~~~~y~~~~~---------P~i~iidp~tge~l~~~~G 232 (346)
++..|++... |.+.|||+ .|+.+..+.|
T Consensus 111 ~~~~~gv~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g 147 (175)
T 1xvq_A 111 FGEDYGVTIADGPMAGLLARAIVVIGA-DGNVAYTELV 147 (175)
T ss_dssp HHHHTTCBBCSSTTTTSBCSEEEEECT-TSBEEEEEEC
T ss_pred HHHHhCCcccccccCCcccceEEEECC-CCeEEEEEEC
Confidence 6677877654 99999996 6999888864
No 227
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.70 E-value=0.019 Score=44.39 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=38.1
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
..++|.+++++ |-+.+.|++.|..++||+|.|++-.|++...
T Consensus 21 n~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 21 MSRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 37889999999 8899999999999999999999999987643
No 228
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=95.62 E-value=0.043 Score=50.44 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=69.3
Q ss_pred ccccCHHHHHHHhhhcCcEEEEEec--CCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCC---hHHH
Q 036413 130 MFNGSFEKAKDVGSDENKWLLVNLQ--SPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDD---SECR 202 (346)
Q Consensus 130 ~~~gsf~~A~~~Ak~~~K~LlV~l~--~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~---~eg~ 202 (346)
+-..+|++++ ..++.+||++. .+||. | .-+| +.+.+-+. ..+++|..++++ . .+..
T Consensus 21 Lt~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l-~P~~--e~lA~~~~~~~~~v~~akVD~d------~~g~~~n~ 83 (248)
T 2c0g_A 21 LDELSFEKTV----ERFPYSVVKFDIASPYGE----K-HEAF--TAFSKSAHKATKDLLIATVGVK------DYGELENK 83 (248)
T ss_dssp CCTTTHHHHH----TTSSEEEEEEEESSCCSH----H-HHHH--HHHHHHHHHHCSSEEEEEEEEC------SSTTCTTH
T ss_pred CCHHHHHHHH----hcCCCEEEEEECCCCCCc----c-HHHH--HHHHHHHhccCCCeEEEEEECC------cccccccH
Confidence 3466888865 45789999999 89986 3 1122 23333332 147999999988 4 2357
Q ss_pred HHHhhcCCC--CCceEEEEeCCCCc--eEEEE--eCCCChHHHHHHHHHHHH
Q 036413 203 KVCGYYKLD--SLPVVLVIDPITGE--KMRKW--CGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 203 ~~~~~y~~~--~~P~i~iidp~tge--~l~~~--~G~~~~~~~i~~L~~fl~ 248 (346)
.++..|++. .||++.+.- |+ ..... .|..+.+.|.+.|.+.+.
T Consensus 84 ~la~~~~V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~ 132 (248)
T 2c0g_A 84 ALGDRYKVDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTP 132 (248)
T ss_dssp HHHHHTTCCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred HHHHHhCCCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence 899999999 999999985 65 24556 788888777776666543
No 229
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=95.60 E-value=0.044 Score=51.82 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=76.0
Q ss_pred cCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH
Q 036413 123 YRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR 202 (346)
Q Consensus 123 f~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~ 202 (346)
-.|....+-..++.... ....+.++|++.+++|..|+.+... | ..+.+-++ ..+.|..++.+ ..+..
T Consensus 115 ~~p~v~~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~-~--~~~A~~~~-~~i~f~~vd~~------~~~~~ 181 (361)
T 3uem_A 115 QLPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSN-F--KTAAESFK-GKILFIFIDSD------HTDNQ 181 (361)
T ss_dssp SSCSEEECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHH-H--HHHHGGGT-TTCEEEEECTT------SGGGH
T ss_pred CCCcceecCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHH-H--HHHHHHcc-CceEEEEecCC------hHHHH
Confidence 34554445566666443 3345567888999999999887411 1 23333445 67788888777 56788
Q ss_pred HHHhhcCCCC--CceEEEEeCCCCceEEEE---eCCCChHHHHHHHHHHHHc
Q 036413 203 KVCGYYKLDS--LPVVLVIDPITGEKMRKW---CGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 203 ~~~~~y~~~~--~P~i~iidp~tge~l~~~---~G~~~~~~~i~~L~~fl~~ 249 (346)
++++.|++.. +|++++++. |+....+ .|..+++.+.+-+..+++.
T Consensus 182 ~~~~~fgi~~~~~P~~~~~~~--~~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 182 RILEFFGLKKEECPAVRLITL--EEEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp HHHHHTTCCTTTCSEEEEEEC--C--CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCccCCccEEEEEc--CCcccccCCCccccCHHHHHHHHHHHhcC
Confidence 9999999987 999999996 2222233 2678888888888888764
No 230
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=95.59 E-value=0.03 Score=51.20 Aligned_cols=97 Identities=21% Similarity=0.277 Sum_probs=66.1
Q ss_pred cccCHHHHHHHhhhcCcEEEEEecC--CCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC---hHHHHH
Q 036413 131 FNGSFEKAKDVGSDENKWLLVNLQS--PKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD---SECRKV 204 (346)
Q Consensus 131 ~~gsf~~A~~~Ak~~~K~LlV~l~~--~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~---~eg~~~ 204 (346)
-..+|++++ ..++.+||++.. +||. |. .+| +.+.+-+. ..+++|..++++ . .+...+
T Consensus 11 t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd------~~g~~~~~~l 73 (240)
T 2qc7_A 11 DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGIS------DYGDKLNMEL 73 (240)
T ss_dssp CTTHHHHHG----GGCSEEEEEECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCC------CSSSCCSHHH
T ss_pred CHHHHHHHH----cCCCCEEEEEeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCC------cccchhhHHH
Confidence 456687765 357899999999 8886 31 122 22333332 147999999976 3 234679
Q ss_pred HhhcCCC--CCceEEEEeCCCCc--eEEEEeCCCChHHHHHHHHHH
Q 036413 205 CGYYKLD--SLPVVLVIDPITGE--KMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 205 ~~~y~~~--~~P~i~iidp~tge--~l~~~~G~~~~~~~i~~L~~f 246 (346)
+..|++. .||++.++-. |+ ....+.|..+.+.|++.|.+.
T Consensus 74 ~~~~~V~~~~~PTl~~f~~--G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 74 SEKYKLDKESYPVFYLFRD--GDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp HHHTTCCGGGCSEEEEEET--TCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred HHHcCCCCCCCCEEEEEeC--CCcCcceeecCCCCHHHHHHHHHHh
Confidence 9999999 9999999963 65 355678988876666555543
No 231
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=95.53 E-value=0.045 Score=45.80 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=53.9
Q ss_pred hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHh---------------
Q 036413 144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCG--------------- 206 (346)
Q Consensus 144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~--------------- 206 (346)
-.+|+++|++. .+||..|..--..+ .+...++-+ .+++++.++.+ +++. .++++
T Consensus 28 ~~Gk~vvl~f~~~~~c~~C~~e~~~l--~~~~~~~~~-~~~~~v~vs~d------~~~~~~~~~~~~~~~~p~l~D~~~~ 98 (157)
T 4g2e_A 28 LKGKVVVLAFYPAAFTQVCTKEMCTF--RDSMAKFNQ-VNAVVLGISVD------PPFSNKAFKEHNKLNFTILSDYNRE 98 (157)
T ss_dssp GTTSCEEEEECSCTTCCC------CC--SCGGGGGGG-CSSEEEEEESS------CHHHHHHHHHHTTCCSEEEECTTSH
T ss_pred HCCCeEEEEecCCCCCCccccchhhc--ccccccccc-cCceEeeeccc------chhHHHHHHHHcCCcEEEEEcCCcH
Confidence 35789999987 88999997643333 223344445 78889988887 5543 33443
Q ss_pred ---hcCCC-----------CCceEEEEeCCCCceEEEEeC-----CCChHHHHHHHH
Q 036413 207 ---YYKLD-----------SLPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLL 244 (346)
Q Consensus 207 ---~y~~~-----------~~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~ 244 (346)
.|++. ..|++.|||+ .|.....+.| ..+.+++++.|.
T Consensus 99 v~~~ygv~~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 99 VVKKYNVAWEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVVK 154 (157)
T ss_dssp HHHHTTCEEECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred HHHHcCCccccccCCCcceeeeeEEEECC-CCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 44431 3567889997 6888777654 234556655543
No 232
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=95.50 E-value=0.047 Score=48.04 Aligned_cols=91 Identities=9% Similarity=0.110 Sum_probs=58.7
Q ss_pred hcCcEEEEEec-----CCCCccccccccccCCCHHH-HHHh-ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceE
Q 036413 144 DENKWLLVNLQ-----SPKEFTSHTLNRDTWADEAV-SQTI-RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVV 216 (346)
Q Consensus 144 ~~~K~LlV~l~-----~~~~f~c~~lnRdvw~~~~V-~~~i-~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i 216 (346)
+..+.++|.+. ++||..|+.|-.. | ..+ .++. . .+..|..++.+ . ...++..|++..||++
T Consensus 18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~-~--~~~a~~~~~~-~~v~~~~vd~~------~--~~~l~~~~~v~~~Ptl 85 (229)
T 2ywm_A 18 EFKEPVSIKLFSQAIGCESCQTAEELLKE-T--VEVIGEAVGQ-DKIKLDIYSPF------T--HKEETEKYGVDRVPTI 85 (229)
T ss_dssp HCCSCEEEEEECCCTTCGGGGHHHHHHHH-H--HHHHHHHHCT-TTEEEEEECTT------T--CHHHHHHTTCCBSSEE
T ss_pred hccCCeEEEEEccCCCCcccHHHHHHHHH-H--HHHHhccCCC-CceEEEEecCc------c--cHHHHHHcCCCcCcEE
Confidence 33445555554 4455556555322 1 111 2222 4 67888887666 2 4679999999999999
Q ss_pred EEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 217 LVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 217 ~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.+.. .|.....+.|..+.+++.+.+...+.
T Consensus 86 ~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~~ 115 (229)
T 2ywm_A 86 VIEG--DKDYGIRYIGLPAGLEFTTLINGIFH 115 (229)
T ss_dssp EEES--SSCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred EEEC--CCcccceecCCccHHHHHHHHHHHHh
Confidence 9996 35666778898777777777766654
No 233
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=95.48 E-value=0.13 Score=43.59 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=25.7
Q ss_pred ceEEEEeCCCCceEEEEeCC--CChHHHHHHHHHHH
Q 036413 214 PVVLVIDPITGEKMRKWCGM--VDPVSLLEDLLSFM 247 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~--~~~~~~i~~L~~fl 247 (346)
|.+.|||| .|..+..+.|. .+.+++++.|..-+
T Consensus 135 ~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 135 TSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp CEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred eEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence 68899997 69998888884 35677888877654
No 234
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.39 E-value=0.015 Score=42.33 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
...++|.+.+++ |-+.+.|+..|.+++||+|.|++-.|++..
T Consensus 8 ~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 8 PPEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CCHHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 456789999999 789999999999999999999999998653
No 235
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=95.26 E-value=0.0099 Score=45.45 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=34.7
Q ss_pred EEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEE
Q 036413 293 RIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 293 rIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~ 343 (346)
+|+||+++|+.+ .. ...++|...||+ +.+. .+.+.||+++||++++.++
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~--k~l~l~~~~~tL~~~gl~~g~~l~ 73 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPP--ECLDLSDRDITLGDLPIQSGDMLI 73 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCC--CCCCCCCSSCBTTTSSCCTTCEEE
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCC--cccccCCCCCCHHHcCCCCCCEEE
Confidence 589999999764 11 245778878886 4453 3367899999999666554
No 236
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=95.24 E-value=0.073 Score=45.06 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=62.7
Q ss_pred cCcEEEEEecCCCCc-cccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCC------------------------
Q 036413 145 ENKWLLVNLQSPKEF-TSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDD------------------------ 197 (346)
Q Consensus 145 ~~K~LlV~l~~~~~f-~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~------------------------ 197 (346)
.+||+||++-.+||. .|......+ ..+.+-+.+ .++.++.++.+. .+.
T Consensus 27 ~Gk~vll~F~~t~C~~~C~~~~~~l---~~~~~~~~~~~~~~~vv~is~d~--~d~~~~~~~~~~~~~~~~~~w~~l~~~ 101 (170)
T 3me7_A 27 KGKPIILSPIYTHCRAACPLITKSL---LKVIPKLGTPGKDFWVITFTFDP--KDTLEDIKRFQKEYGIDGKGWKVVKAK 101 (170)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHH---HTTHHHHCCBTTTBEEEEEECCT--TCCHHHHHHHHHHTTCCSSSEEEEEES
T ss_pred CCCEEEEEEECCCCCchhHHHHHHH---HHHHHHhhhcCCceEEEEEECCC--CCCHHHHHHHHHHcCCCCCCeEEEeCC
Confidence 389999999999996 475432211 111111210 345555555441 000
Q ss_pred -ChHHHHHHhhcCC---------CCCceEEEEeCCCCceEEEEeCC-CChHHHHHHHHHHHHcCCc
Q 036413 198 -DSECRKVCGYYKL---------DSLPVVLVIDPITGEKMRKWCGM-VDPVSLLEDLLSFMESGPR 252 (346)
Q Consensus 198 -~~eg~~~~~~y~~---------~~~P~i~iidp~tge~l~~~~G~-~~~~~~i~~L~~fl~~~~~ 252 (346)
..+..++++.|++ ...|.+.|||| .|+.+..+.|. .++++++..|.+.......
T Consensus 102 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~~ 166 (170)
T 3me7_A 102 TSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEGHH 166 (170)
T ss_dssp SHHHHHHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCSCT
T ss_pred CHHHHHHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhccccc
Confidence 1244566666553 34588999997 69988888995 6889999998887755443
No 237
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=95.17 E-value=0.097 Score=46.75 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=60.2
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-H---------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-C--------------------- 201 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g--------------------- 201 (346)
.+||+||++- .+||..|..--..+ ++...+|-. .++.++.++.+ +.+ .
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l--~~l~~~~~~-~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~fp~l 125 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEF--NKHIKDFEN-KNVELLGISVD------SVYSHLAWKNMPIEKGGIGNVEFTLV 125 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSSEEE
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHhhhhcCccCCceEEE
Confidence 6799999998 99999997542211 111122223 56777777766 332 1
Q ss_pred ----HHHHhhcCC-----CCCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHHH
Q 036413 202 ----RKVCGYYKL-----DSLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSFM 247 (346)
Q Consensus 202 ----~~~~~~y~~-----~~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~fl 247 (346)
..++..|++ ...|++.|||+ .|..+..+.|. .+++++++.|....
T Consensus 126 ~D~~~~~~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 126 SDINKDISKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp ECTTSHHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred ECCchHHHHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 234445555 25799999996 69988887663 35677877777654
No 238
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=94.99 E-value=0.075 Score=46.91 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=60.1
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCCCCChH-H------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDDDDDSE-C------------------ 201 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~~~~~e-g------------------ 201 (346)
.+||+||++. ..||..|..-- +.+.++. ++.++.++.++.+ +++ .
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~------~~l~~l~~~~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~f 114 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEI------IAFGDRLEEFRSINTEVVACSVD------SQFTHLAWINTPRRQGGLGPIRI 114 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH------HHHHHTHHHHHTTTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSS
T ss_pred CCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHhhhccCccCCce
Confidence 5799999998 89999996532 2233322 2257888887776 332 1
Q ss_pred -------HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 202 -------RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 202 -------~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
..++..|++. ..|++.|||+ .|..+..+.|.. +++++++.|....
T Consensus 115 p~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 115 PLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp CEEECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred EEEECCchHHHHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 2344455552 4899999997 699888876642 5677888777654
No 239
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=94.95 E-value=0.13 Score=43.10 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=24.8
Q ss_pred CceEEEEeCCCCceEEEEeC-----CCChHHHHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLLS 245 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~~ 245 (346)
.|++.|||+ .|..+..+.| ..+++++++.|.+
T Consensus 133 ~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~ 169 (171)
T 2yzh_A 133 ARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKE 169 (171)
T ss_dssp CCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHH
T ss_pred eeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHh
Confidence 599999997 6998888764 3457888887765
No 240
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.88 E-value=0.037 Score=40.02 Aligned_cols=44 Identities=11% Similarity=0.267 Sum_probs=39.9
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
+.+.+.|.+.+++ |=+.+.|+.-|+++++|+|.|++=-|.+...
T Consensus 17 ~se~e~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 17 PSERQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred cchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 5678889999999 8999999999999999999999999987643
No 241
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=94.86 E-value=0.048 Score=38.04 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
.+.|++.|++ |-|.+.|++.|..++||++.|.+.-.+
T Consensus 12 ~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3899999999 999999999999999999999887543
No 242
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.81 E-value=0.037 Score=40.40 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=37.3
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHc-CCCHHHHHHHHhhcCCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNAT-NWNLDKAILRFNNNSNN 53 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~-~wdle~Av~~f~~~~~~ 53 (346)
..++|.+++++ |-+.+.|++.|.++ |||+|.|++-.|++...
T Consensus 9 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 45689999999 89999999999999 79999999999997643
No 243
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.044 Score=42.14 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
..+.|.+.+++ |=+.+.|++.|.+++||+|.|++-.|++..
T Consensus 29 ~e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 29 DEAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 56789999999 899999999999999999999999998654
No 244
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=94.74 E-value=0.064 Score=41.76 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=52.1
Q ss_pred CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCc
Q 036413 146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGE 225 (346)
Q Consensus 146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge 225 (346)
.+..+|.+..+||..|+.+.+ ++. + +. .++-|..++++ +++...++..|+ .+.|.+ +++ |+
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~-~L~-----~-l~-~~i~~~~vdi~------~~~~~el~~~~g-~~vP~l-~~~---g~ 75 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKE-VLQ-----P-YK-DRFILQEVDIT------LPENSTWYERYK-FDIPVF-HLN---GQ 75 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHH-HTS-----T-TS-SSSEEEEEETT------SSTTHHHHHHSS-SSCSEE-EES---SS
T ss_pred CCCEEEEEeCCCCcchHHHHH-HHH-----H-hh-hCCeEEEEECC------CcchHHHHHHHC-CCCCEE-EEC---CE
Confidence 345677788899999987732 111 1 22 45667777887 445578889999 999976 444 66
Q ss_pred eEEEEeCCCChHHHHHHHHHH
Q 036413 226 KMRKWCGMVDPVSLLEDLLSF 246 (346)
Q Consensus 226 ~l~~~~G~~~~~~~i~~L~~f 246 (346)
.+ .+ |..+++.+.+.|..+
T Consensus 76 ~~-~~-~g~~~~~l~~~l~~~ 94 (100)
T 1wjk_A 76 FL-MM-HRVNTSKLEKQLRKL 94 (100)
T ss_dssp EE-EE-SSCCHHHHHHHHHSS
T ss_pred EE-Ee-cCCCHHHHHHHHHHH
Confidence 54 33 446777665555443
No 245
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.64 E-value=0.068 Score=39.42 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
-.+.|.+.+++ +-.+.+.+++.|.++++|++.||+.-|....
T Consensus 19 y~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 19 FSKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 35689999999 7789999999999999999999999999764
No 246
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=94.60 E-value=0.17 Score=43.44 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=59.6
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHHhhc--------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVCGYY-------------- 208 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~~~y-------------- 208 (346)
.+||+||++. ..+|..|..--..+ +....+|-+ .++.++.++.+ +++ ..+++..+
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l--~~~~~~~~~-~~v~vv~Is~d------~~~~~~~~~~~~~~~~~~~fp~l~D~ 99 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQK-LGVDVYSVSTD------THFTHKAWHSSSETIAKIKYAMIGDP 99 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHHHCTTGGGCCSEEEECT
T ss_pred CCCeEEEEEECCCCCCccHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHHHcCcccCCceeEEECC
Confidence 4799999997 48999886542211 112222333 57888888777 443 23344433
Q ss_pred --------CCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413 209 --------KLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM 247 (346)
Q Consensus 209 --------~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl 247 (346)
++. ..|++.|||+ .|..+..+.|.. +.+++++.|....
T Consensus 100 ~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~ 155 (186)
T 1n8j_A 100 TGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155 (186)
T ss_dssp TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred chHHHHHhCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 332 2599999997 699888887743 4777877777654
No 247
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=94.59 E-value=0.11 Score=42.88 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=56.2
Q ss_pred CcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHHHH
Q 036413 146 NKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRKVC 205 (346)
Q Consensus 146 ~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~~~ 205 (346)
+||++|++. ..||..|...-..+ ++...+|-+ .+ .++.++.+ +++ ...++
T Consensus 35 ~~~vvl~f~~~~~c~~C~~~~~~l--~~~~~~~~~-~~-~vv~is~d------~~~~~~~~~~~~~~~~~~l~D~~~~~~ 104 (159)
T 2a4v_A 35 NRVVVFFVYPRASTPGSTRQASGF--RDNYQELKE-YA-AVFGLSAD------SVTSQKKFQSKQNLPYHLLSDPKREFI 104 (159)
T ss_dssp CSEEEEEECSSSSSHHHHHHHHHH--HHHHHHHTT-TC-EEEEEESC------CHHHHHHHHHHHTCSSEEEECTTCHHH
T ss_pred CCeEEEEEcCCCCCCCHHHHHHHH--HHHHHHHHh-CC-cEEEEeCC------CHHHHHHHHHHhCCCceEEECCccHHH
Confidence 458888875 78888886432111 111122222 44 55566555 322 12455
Q ss_pred hhcCCCCCc------eEEEEeCCCCceEEEEeCCCC---hHHHHHHHHHHHHc
Q 036413 206 GYYKLDSLP------VVLVIDPITGEKMRKWCGMVD---PVSLLEDLLSFMES 249 (346)
Q Consensus 206 ~~y~~~~~P------~i~iidp~tge~l~~~~G~~~---~~~~i~~L~~fl~~ 249 (346)
..|++...| +..|| + .|..+..+.|... .+.+++.|.+.++.
T Consensus 105 ~~~gv~~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~ 155 (159)
T 2a4v_A 105 GLLGAKKTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK 155 (159)
T ss_dssp HHHTCBSSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHHH
Confidence 667776677 77788 6 6999888888543 46777778777764
No 248
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=94.55 E-value=0.055 Score=49.59 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=57.2
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC---------------------- 201 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg---------------------- 201 (346)
.+||+||++. ..+|+.|..--..+ ++...+|-. .++.++.++.+ +.+.
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el~~l--~~l~~~~~~-~gv~vv~IS~D------~~~~~~~~~~~~~~~~g~~~~~fp~l 160 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEIIAF--GDRLEEFRS-INTEVVACSVD------SQFTHLAWINTPRRQGGLGPIRIPLL 160 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHTSCGGGTSCCSCSSCEE
T ss_pred CCCeEEEEEECCCCCCchHHHHHHH--HHHHHHHHH-cCCEEEEEcCC------CHHHHHHHHHHHHHhcCCccccccee
Confidence 5799999998 78999997532111 112222323 67888888777 4332
Q ss_pred ----HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413 202 ----RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS 245 (346)
Q Consensus 202 ----~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~ 245 (346)
..++..|++. .+|.+.|||+ .|....++.|. .+.++++..|..
T Consensus 161 ~D~~~~va~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~a 217 (254)
T 3tjj_A 161 SDLTHQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQA 217 (254)
T ss_dssp ECTTSHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred eCcHHHHHHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence 2344445542 4799999997 69888776652 245666666554
No 249
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.53 E-value=0.065 Score=39.08 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHHhhcCC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNW-NLDKAILRFNNNSN 52 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f~~~~~ 52 (346)
.+.|.+.+++ |=+.+.|++.|.+++| |+|.|++-.|++..
T Consensus 20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 3579999999 8899999999999999 99999999998654
No 250
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=94.42 E-value=0.066 Score=48.48 Aligned_cols=88 Identities=17% Similarity=0.097 Sum_probs=57.9
Q ss_pred cCcEEEEEecC-CCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHH-------------------
Q 036413 145 ENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSEC------------------- 201 (346)
Q Consensus 145 ~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg------------------- 201 (346)
.+||+||++.. .+|+.|..-- +.+.++.+ +.++.++.++.+ +.+.
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el------~~l~~l~~~~~~~gv~vv~Is~D------~~~~~~~~~~~~~~~~~~~~~~f 143 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEI------IAFSDRVHEFRAINTEVVACSVD------SQFTHLAWIITPRKQGGLGPMKI 143 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH------HHHHHHHHHHHTTTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSS
T ss_pred CCCEEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHHHhhcCCCCCce
Confidence 57999999987 8999996532 23333322 257888888777 4332
Q ss_pred -------HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHH
Q 036413 202 -------RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLS 245 (346)
Q Consensus 202 -------~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~ 245 (346)
..++..|++. .+|.+.|||+ .|.....+.|.. +.+++++.|..
T Consensus 144 p~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~ 203 (240)
T 3qpm_A 144 PLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQA 203 (240)
T ss_dssp CEEECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred eEEeCchHHHHHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2344555554 5799999997 699887766532 35666666654
No 251
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.27 E-value=0.064 Score=36.45 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=34.9
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
-..++|.+.+++ |-+.+.|+..|.+++ |+|.|++-.|++
T Consensus 8 ~~~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 8 VNQQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SCHHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 456789999999 889999999999997 999999988874
No 252
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=94.25 E-value=0.12 Score=44.10 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=56.5
Q ss_pred hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHH----------------
Q 036413 144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVC---------------- 205 (346)
Q Consensus 144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~---------------- 205 (346)
-.+||++|++. ..||..|..-...+ .....+|-. .++.++.++.+ +++ ..+++
T Consensus 49 ~~Gk~vvl~f~~~~~c~~C~~el~~l--~~l~~~~~~-~~~~vv~Vs~D------~~~~~~~~~~~~~~~f~~l~D~~~~ 119 (179)
T 3ixr_A 49 YTNQWLVLYFYPKDNTPGSSTEGLEF--NLLLPQFEQ-INATVLGVSRD------SVKSHDSFCAKQGFTFPLVSDSDAI 119 (179)
T ss_dssp GTTSEEEEEECSCTTSHHHHHHHHHH--HHHHHHHHT-TTEEEEEEESC------CHHHHHHHHHHHTCCSCEEECTTCH
T ss_pred HCCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHH-CCCEEEEEcCC------CHHHHHHHHHHcCCceEEEECCchH
Confidence 35789999997 78899886543221 112222333 67888888877 433 23343
Q ss_pred --hhcCCC------------CCceEEEEeCCCCceEEEEeCCC---ChHHHHHHHHHH
Q 036413 206 --GYYKLD------------SLPVVLVIDPITGEKMRKWCGMV---DPVSLLEDLLSF 246 (346)
Q Consensus 206 --~~y~~~------------~~P~i~iidp~tge~l~~~~G~~---~~~~~i~~L~~f 246 (346)
..|++. ..|++.|||+ .|..+..+.|.. ..+++++.|...
T Consensus 120 ~~~~~gv~~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~il~~l~~l 176 (179)
T 3ixr_A 120 LCKAFDVIKEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVPGHAEEVLNKLKAH 176 (179)
T ss_dssp HHHHTTCEEEECCC--CEEEECCEEEEECT-TSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 444442 1588999997 699888886532 235555555543
No 253
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.15 E-value=0.084 Score=37.00 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=34.2
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
++.|.+.|++ |-|.+.|++-|..++||+|.|.+.-.+.
T Consensus 10 e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 10 SSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3569999999 9999999999999999999999986653
No 254
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.04 E-value=0.089 Score=39.48 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcC-CCHHHHHHHHhhcCCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATN-WNLDKAILRFNNNSNN 53 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~-wdle~Av~~f~~~~~~ 53 (346)
-..+.|.+.+++ |-+.+.|++.|.+++ ||+|.|++-.|++...
T Consensus 8 ~~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 8 LDESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp SCHHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 356789999999 889999999999998 5899999999997643
No 255
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=93.87 E-value=0.11 Score=39.78 Aligned_cols=75 Identities=21% Similarity=0.187 Sum_probs=48.5
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
+|.+..+||..|..+. .+.+-+. ..+ +..+|+++ ++ .++..|++. .|.|.+ ..|+.+.
T Consensus 3 vv~f~a~~C~~C~~~~-------~~L~~~~-~~~-~~~vdid~-----~~---~l~~~~g~~-vPtl~~---~~G~~v~- 60 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAV-------EALAQAR-AGA-FFSVFIDD-----DA---ALESAYGLR-VPVLRD---PMGRELD- 60 (87)
T ss_dssp EEEEECSSCHHHHHHH-------HHHHHTT-CCC-EEEEECTT-----CH---HHHHHHTTT-CSEEEC---TTCCEEE-
T ss_pred EEEEECCCCchHHHHH-------HHHHHHH-Hhh-eEEEECCC-----CH---HHHHHhCCC-cCeEEE---ECCEEEe-
Confidence 5677889999998873 2222233 332 34567762 33 377788987 999887 3587763
Q ss_pred EeCCCChHHHHHHHHHHHH
Q 036413 230 WCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 230 ~~G~~~~~~~i~~L~~fl~ 248 (346)
|..+++.+.+.|...++
T Consensus 61 --g~~~~~~L~~~l~~~~~ 77 (87)
T 1ttz_A 61 --WPFDAPRLRAWLDAAPH 77 (87)
T ss_dssp --SCCCHHHHHHHHHTCC-
T ss_pred --CCCCHHHHHHHHHHHHH
Confidence 77888776666655443
No 256
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.68 E-value=0.063 Score=39.26 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
.+.|....+. ||.....|+.-|+.+|||++.||..--.
T Consensus 10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4678899999 8999999999999999999999987654
No 257
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=93.67 E-value=0.089 Score=36.41 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=37.3
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
+.++.+...+++=-..+..++++.|+.++||++.||+..++..
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3457778888887888999999999999999999999988764
No 258
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=93.67 E-value=0.066 Score=41.79 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=43.9
Q ss_pred cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh---HHHHHHhhcCCCCCceEEEEeCCC
Q 036413 147 KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS---ECRKVCGYYKLDSLPVVLVIDPIT 223 (346)
Q Consensus 147 K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~---eg~~~~~~y~~~~~P~i~iidp~t 223 (346)
+.|+| +..+||..|+.+.. .+.+ +. ..|.+..++.+ .. ....++..|++..+|++ +++
T Consensus 20 ~~vv~-f~a~~C~~C~~~~~------~l~~-~~-~~~~~v~v~~~------~~~~~~~~~l~~~~~v~~~Pt~-~~~--- 80 (116)
T 2e7p_A 20 APVVV-FSKTYCGYCNRVKQ------LLTQ-VG-ASYKVVELDEL------SDGSQLQSALAHWTGRGTVPNV-FIG--- 80 (116)
T ss_dssp SSEEE-EECTTCHHHHHHHH------HHHH-HT-CCCEEEEGGGS------TTHHHHHHHHHHHHSCCSSCEE-EET---
T ss_pred CCEEE-EECCCChhHHHHHH------HHHH-cC-CCeEEEEccCC------CChHHHHHHHHHHhCCCCcCEE-EEC---
Confidence 45666 88999999988742 2333 34 56776665544 21 12457888999999999 554
Q ss_pred CceEEEEeC
Q 036413 224 GEKMRKWCG 232 (346)
Q Consensus 224 ge~l~~~~G 232 (346)
|+.+..+.|
T Consensus 81 g~~v~~~~~ 89 (116)
T 2e7p_A 81 GKQIGGCDT 89 (116)
T ss_dssp TEEEECHHH
T ss_pred CEEECChHH
Confidence 776655544
No 259
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.62 E-value=0.12 Score=38.70 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
++-+|.|..+||+..|...-.+.|+++++||..||...-+..
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 555899999999999999999999999999999999888754
No 260
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.60 E-value=0.085 Score=37.25 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=37.5
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN 53 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~ 53 (346)
..++.++.++ +=.|.+..++.|..+||||+.||..-+..+.+
T Consensus 10 a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 10 AALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 3489999999 88899999999999999999999998876544
No 261
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=93.52 E-value=0.013 Score=54.01 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
..+.++|.+|+.. ||-+.+-|..+|+.+|||++.|+..|-+..
T Consensus 196 ~~q~~~v~~~~~~-T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 238 (250)
T 1jkg_B 196 PEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHLK 238 (250)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3566899999999 999999999999999999999999998854
No 262
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=93.43 E-value=0.23 Score=41.44 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=27.5
Q ss_pred HHHhhcCCCC------CceEEEEeCCCCceEEEEeC-----CCChHHHHHHHH
Q 036413 203 KVCGYYKLDS------LPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLL 244 (346)
Q Consensus 203 ~~~~~y~~~~------~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~ 244 (346)
.++..|++.. .|++.|||+ .|..+..+.+ ..+.+++++.|.
T Consensus 113 ~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 113 SFGENYGVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYK 164 (166)
T ss_dssp HHHHHHTCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred HHHHHhCCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHh
Confidence 4555666542 799999996 6998877543 234566666654
No 263
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=93.22 E-value=0.54 Score=38.98 Aligned_cols=88 Identities=13% Similarity=-0.010 Sum_probs=50.8
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChH---------------------H
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSE---------------------C 201 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~e---------------------g 201 (346)
.+||++|++- +.||..|..-- +.+.++.++ .++.++.++.+ +++ .
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~------~~l~~~~~~~~~v~vv~is~d------~~~~~~~~~~~~~~~~~~~l~D~~~ 108 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQT------RRFNEELAGLDNTVVLTVSMD------LPFAQKRWCGAEGLDNAIMLSDYFD 108 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHH------HHHHHHTTTCTTEEEEEEESS------CHHHHHHHHHHHTCTTSEEEECTTT
T ss_pred CCCEEEEEEECCCCCCccHHHH------HHHHHHHHHcCCcEEEEEECC------CHHHHHHHHHhcCCCCcEEecCCch
Confidence 5688888886 47888886431 222222220 13444444443 211 1
Q ss_pred HHHHhhcCCC----C--CceEEEEeCCCCceEEEEeCC-----CChHHHHHHHHH
Q 036413 202 RKVCGYYKLD----S--LPVVLVIDPITGEKMRKWCGM-----VDPVSLLEDLLS 245 (346)
Q Consensus 202 ~~~~~~y~~~----~--~P~i~iidp~tge~l~~~~G~-----~~~~~~i~~L~~ 245 (346)
..++..|++. . .|++.|||+ .|..+..+.|. .+.+++++.|.+
T Consensus 109 ~~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 109 HSFGRDYALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp CHHHHHHTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred hHHHHHhCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 2455555553 2 399999997 69988888762 233777776653
No 264
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=92.89 E-value=0.21 Score=45.07 Aligned_cols=102 Identities=9% Similarity=0.063 Sum_probs=62.7
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc--EEEEEeecCC--------------------------C
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN--FIFWQVYDDD--------------------------D 193 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n--FVfw~~~~~~--------------------------~ 193 (346)
+....|..++.+.+++|..|+.|.. .+.+++++.+ |++..+..-. +
T Consensus 93 G~~~ak~~v~~F~D~~Cp~C~~~~~------~l~~~~~~g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~ 166 (241)
T 1v58_A 93 GKKDAPVIVYVFADPFCPYCKQFWQ------QARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASG 166 (241)
T ss_dssp SCTTCSEEEEEEECTTCHHHHHHHH------HHHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTT
T ss_pred CCCCCCeEEEEEECCCChhHHHHHH------HHHHHHhCCcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4556788999999999999999964 4566666222 2322221100 0
Q ss_pred -----C--CCCC-------hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 194 -----D--DDDD-------SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 194 -----~--~~~~-------~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
+ +..+ .+..+++..|++...|++.|.+. +|+ +.++.|..++++|.+.|.+.+.++-
T Consensus 167 ~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~-~G~-~~~~~G~~~~~~L~~~l~~~~~~~~ 236 (241)
T 1v58_A 167 GKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENT-LQQAVGLPDQKTLNIIMGNKLQHHH 236 (241)
T ss_dssp TCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTE-EEEEESSCCHHHHHHHTTC------
T ss_pred ccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHHHHHHHhhc
Confidence 0 0001 12345667889999999999885 575 3667899999888887777665543
No 265
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=92.24 E-value=0.39 Score=42.32 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=60.6
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc--EEEEEeecCCCC--------------------------
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN--FIFWQVYDDDDD-------------------------- 194 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n--FVfw~~~~~~~~-------------------------- 194 (346)
...+|..+|.+.+++|..|+.+... +.++.+ .+ +++..+.....+
T Consensus 83 ~~~~k~~vv~F~d~~Cp~C~~~~~~------l~~l~~-~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~ 155 (216)
T 1eej_A 83 APQEKHVITVFTDITCGYCHKLHEQ------MADYNA-LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAG 155 (216)
T ss_dssp CTTCCEEEEEEECTTCHHHHHHHTT------HHHHHH-TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHH------HHHHHh-CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhC
Confidence 4567999999999999999999654 555554 33 333332211000
Q ss_pred --------CCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 195 --------DDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 195 --------~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
...-.+...++..|++...|++.|.+ |. ++.|..++++|.+.|.....
T Consensus 156 ~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~~ 211 (216)
T 1eej_A 156 KSVAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQK 211 (216)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhhh
Confidence 00123456678889999999995434 54 35798888888887776543
No 266
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.15 E-value=0.24 Score=38.05 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHc-CCCHHHHHHHHhhcCCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNAT-NWNLDKAILRFNNNSNN 53 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~-~wdle~Av~~f~~~~~~ 53 (346)
..+.|.+.+++ |-+.+.|++.|..+ |||++.|++-.|++...
T Consensus 29 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 57889999999 89999999999988 59999999999997643
No 267
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=91.98 E-value=0.84 Score=39.66 Aligned_cols=89 Identities=15% Similarity=0.012 Sum_probs=55.4
Q ss_pred hhhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChH-------------------
Q 036413 142 GSDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSE------------------- 200 (346)
Q Consensus 142 Ak~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~e------------------- 200 (346)
+.-.+|+++|++. +.||..|..-. +.+.++.++ .++.++.++.+ +++
T Consensus 74 ~d~~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~f~~l~D 141 (200)
T 3zrd_A 74 SSFAGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSD------LPFAQSRFCGAEGLSNVITLST 141 (200)
T ss_dssp GGGTTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESS------CHHHHTTCTTTTTCTTEEEEET
T ss_pred HHhCCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECC------CHHHHHHHHHHcCCCCceEEec
Confidence 3345799999997 67899986532 334444441 25777777666 222
Q ss_pred --HHHHHhhcCCC---------CCceEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 036413 201 --CRKVCGYYKLD---------SLPVVLVIDPITGEKMRKWCGM-----VDPVSLLEDL 243 (346)
Q Consensus 201 --g~~~~~~y~~~---------~~P~i~iidp~tge~l~~~~G~-----~~~~~~i~~L 243 (346)
...++..|++. ..|.+.|||+ .|..+..+.|. .+.+++++.|
T Consensus 142 ~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 142 LRGADFKQAYGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL 199 (200)
T ss_dssp TSCTHHHHHTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred CchHHHHHHhCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence 23455555553 2599999996 69988876542 3455555554
No 268
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=91.49 E-value=0.36 Score=34.55 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
.++.|.++.++=-.-|.++.+..|++|++|+|.||+..++...
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 4567777777777889999999999999999999999998654
No 269
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=91.32 E-value=0.7 Score=38.42 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=46.8
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCC------CCCC----C-----ChHHHHHHhh
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDD------DDDD----D-----DSECRKVCGY 207 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~------~~~~----~-----~~eg~~~~~~ 207 (346)
.+||++|++- +.||..|..-- +.+.++.++ .++.++.++.+. +-+. . ++....++..
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 115 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATSV------RKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQ 115 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHHH------HHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHH
T ss_pred CCCeEEEEEECCCCCCccHHHH------HHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHH
Confidence 5789999996 78999986432 223333220 245555555441 0000 0 1112445566
Q ss_pred cCCCC---------CceEEEEeCCCCceEEEEeC
Q 036413 208 YKLDS---------LPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 208 y~~~~---------~P~i~iidp~tge~l~~~~G 232 (346)
|++.. .|+..|||+ .|..+..+.|
T Consensus 116 ~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~ 148 (165)
T 1q98_A 116 LGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV 148 (165)
T ss_dssp TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred hCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence 66532 499999997 6998888865
No 270
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.11 E-value=0.046 Score=44.79 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=37.9
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
.+-+|.|..+||+..|...=.+.|+++|+||+.||..+-+..
T Consensus 18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~ 59 (129)
T 2lva_A 18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDER 59 (129)
Confidence 444899999999999999999999999999999999988764
No 271
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=90.39 E-value=0.3 Score=45.91 Aligned_cols=88 Identities=8% Similarity=0.050 Sum_probs=54.9
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-hHHHHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-SECRKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-~eg~~~~~~y~~ 210 (346)
.+..+.++....++.+ +|.+..+||..|+.+. +.+.++- +.+-+..++.. +. .+...+++.|++
T Consensus 185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~------p~le~lA--~~l~~Vd~d~~-----d~~~~~~~la~~~gI 249 (291)
T 3kp9_A 185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQK------ELFGAAF--DQVPYVECSPN-----GPGTPQAQECTEAGI 249 (291)
T ss_dssp CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHH------HHHGGGG--GGSCEEESCSS-----CSSSCCCHHHHTTTC
T ss_pred CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHH------HHHHHHH--HHcCEEEEeec-----CchhhHHHHHHHcCC
Confidence 4555666655555555 6888999999999983 2222222 23323333322 12 335678999999
Q ss_pred CCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413 211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLE 241 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~ 241 (346)
..+|++.+ .|+. ..|..+.+++.+
T Consensus 250 ~~vPT~~i----~G~~---~~G~~~~~~L~~ 273 (291)
T 3kp9_A 250 TSYPTWII----NGRT---YTGVRSLEALAV 273 (291)
T ss_dssp CSTTEEEE----TTEE---EESCCCHHHHHH
T ss_pred cccCeEEE----CCEE---ecCCCCHHHHHH
Confidence 99999655 4764 789877655443
No 272
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=90.34 E-value=0.45 Score=38.93 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=37.6
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN 52 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~ 52 (346)
...+.|.+.+++ |-+.+.|+..|.+++||++.|++..|.+..
T Consensus 77 ~~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 356789999999 888999999999999999999999998654
No 273
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=89.81 E-value=0.38 Score=43.39 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=56.1
Q ss_pred cEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH------------------------
Q 036413 147 KWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC------------------------ 201 (346)
Q Consensus 147 K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg------------------------ 201 (346)
||++|+++ ..+|+.|..--..+ +....+|-+ .++-+++++++ +.+.
T Consensus 30 ~~vvL~f~pa~~cpvC~~el~~l--~~l~~ef~~-~~v~vigIS~D------~~~~~~~~~~~i~~~~~~~~~~~fpil~ 100 (233)
T 2v2g_A 30 SWGVLFSHPRDFTPVSTTELGRV--IQLEGDFKK-RGVKLIALSCD------NVADHKEWSEDVKCLSGVKGDMPYPIIA 100 (233)
T ss_dssp SEEEEEECSCSSCHHHHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHHHHHHHHTCCSSCSSCEEE
T ss_pred CeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHH-cCCEEEEEcCC------CHHHHHHHHHHHHHhhCcccCCceEEEE
Confidence 49999998 78999886532111 111222333 67888888777 3321
Q ss_pred ---HHHHhhcCCC------------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHH
Q 036413 202 ---RKVCGYYKLD------------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSF 246 (346)
Q Consensus 202 ---~~~~~~y~~~------------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~f 246 (346)
..++..|++. ..|.+.|||| .|.....+.|. -+.++++..|...
T Consensus 101 D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 101 DETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp CTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CChHHHHHHhCCcCcccccCCCcccccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2234445542 4799999997 58887776543 2567777777654
No 274
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=89.52 E-value=1.1 Score=40.11 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=56.6
Q ss_pred hhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhcc-Cc------EEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413 143 SDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIRA-SN------FIFWQVYDDDDDDDDDSECRKVCGYYKLDSL 213 (346)
Q Consensus 143 k~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~~-~n------FVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~ 213 (346)
++-.+.++|.+..+| |..|..+ .+.+.++-+. .. ..|..++.+ . ...++..|++..+
T Consensus 22 ~~~~~pv~v~~~~~~~~c~~c~~~------~~~l~ela~~~~~~~~~~~v~~~~vd~d------~--~~~~~~~~gv~~~ 87 (243)
T 2hls_A 22 AEMVNPVEVHVFLSKSGCETCEDT------LRLMKLFEEESPTRNGGKLLKLNVYYRE------S--DSDKFSEFKVERV 87 (243)
T ss_dssp TTCCSCEEEEEEECSSSCTTHHHH------HHHHHHHHHHSCEETTEESEEEEEEETT------T--THHHHHHTTCCSS
T ss_pred HhCCCCEEEEEEeCCCCCCchHHH------HHHHHHHHHhccCCCCCceeEEEEecCC------c--CHHHHHhcCCCcC
Confidence 445578888888887 8888777 3334444330 12 445455554 2 3568999999999
Q ss_pred ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
|++.|.+ | ...+.|..+..++-..+..+++
T Consensus 88 Pt~~i~~---g--~~~~~G~~~~~~l~~fv~~~l~ 117 (243)
T 2hls_A 88 PTVAFLG---G--EVRWTGIPAGEEIRALVEVIMR 117 (243)
T ss_dssp SEEEETT---T--TEEEESCCCTTHHHHHHHHHHH
T ss_pred CEEEEEC---C--ceeEcCCCcHHHHHHHHHHHHh
Confidence 9999983 5 5556786666666666666554
No 275
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=89.31 E-value=0.71 Score=38.38 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=15.1
Q ss_pred cCcEEEEEec-CCCCcccc
Q 036413 145 ENKWLLVNLQ-SPKEFTSH 162 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~ 162 (346)
++||++|++. +.||..|.
T Consensus 34 ~gk~vvl~f~~~~~c~~C~ 52 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCS 52 (162)
T ss_dssp TTSEEEEEEESCTTCHHHH
T ss_pred CCCcEEEEEeCCCCCCCCC
Confidence 5788999887 78898887
No 276
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=89.20 E-value=1.8 Score=36.02 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
.+++..+++...|++.| .|+ .+.|..+.+.|.+.|.+.+.
T Consensus 134 ~~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 134 MALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp HHHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHHHHHHHHh
Confidence 34567788999999876 353 45798899888888887764
No 277
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=89.18 E-value=1.4 Score=41.67 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=56.1
Q ss_pred hcCcEEEEEecC-CCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHH-------------------
Q 036413 144 DENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSEC------------------- 201 (346)
Q Consensus 144 ~~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg------------------- 201 (346)
=.+||+++|+.- .+++.|. .++.+|-+ .+++.+++++.+ +.+.
T Consensus 22 ~~Gk~vvl~F~p~~~tp~C~---------~e~~~~~~~~~~~~~v~gis~D------~~~~~~~f~~~~~l~fp~l~D~~ 86 (322)
T 4eo3_A 22 LYGKYTILFFFPKAGTSGST---------REAVEFSRENFEKAQVVGISRD------SVEALKRFKEKNDLKVTLLSDPE 86 (322)
T ss_dssp TTTSEEEEEECSSTTSHHHH---------HHHHHHHHSCCTTEEEEEEESC------CHHHHHHHHHHHTCCSEEEECTT
T ss_pred hCCCeEEEEEECCCCCCCCH---------HHHHHHHHHhhCCCEEEEEeCC------CHHHHHHHHHhhCCceEEEEcCc
Confidence 357899999872 3445453 22333322 246777777776 4432
Q ss_pred HHHHhhcCC----CCCceEEEEeCCCCceEEEEeCCC---ChHHHHHHHHHHHH
Q 036413 202 RKVCGYYKL----DSLPVVLVIDPITGEKMRKWCGMV---DPVSLLEDLLSFME 248 (346)
Q Consensus 202 ~~~~~~y~~----~~~P~i~iidp~tge~l~~~~G~~---~~~~~i~~L~~fl~ 248 (346)
..+++.|++ ..+|...|||+ .|.....|.+.. .++++++.|....+
T Consensus 87 ~~v~~~ygv~~~~~~~r~tfiId~-~G~i~~~~~~v~~~~h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 87 GILHEFFNVLENGKTVRSTFLIDR-WGFVRKEWRRVKVEGHVQEVKEALDRLIE 139 (322)
T ss_dssp CHHHHHTTCEETTEECCEEEEECT-TSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCcCccEEEEECC-CCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence 234455665 35789999997 699888898732 25778888777653
No 278
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=88.97 E-value=1.1 Score=39.57 Aligned_cols=89 Identities=13% Similarity=0.028 Sum_probs=52.5
Q ss_pred cCcEEEEEec-CCCCcccc-ccccccCCCHHHHHHhccCcE-EEEEeecCCCCCCCChH-HH------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSH-TLNRDTWADEAVSQTIRASNF-IFWQVYDDDDDDDDDSE-CR------------------ 202 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~-~lnRdvw~~~~V~~~i~~~nF-Vfw~~~~~~~~~~~~~e-g~------------------ 202 (346)
.+||++|++. ..||+.|. .--..+ ++...+|-+ .++ .+++++.+ +++ ..
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~~~l--~~~~~~~~~-~~~~~vv~is~d------~~~~~~~~~~~~~~~~~~~l~D~~ 102 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHLPRY--NELAPVFKK-YGVDDILVVSVN------DTFVMNAWKEDEKSENISFIPDGN 102 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHHHHH--HHHHHHHHH-TTCCEEEEEESS------CHHHHHHHHHHTTCTTSEEEECTT
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHH-CCCCEEEEEEcC------CHHHHHHHHHhcCCCceEEEECCC
Confidence 5789999997 89999997 221111 111122223 567 67777766 332 22
Q ss_pred -HHHhhcCCC-----------CCceEEEEeCCCCceEEEEeCC---------CChHHHHHHHH
Q 036413 203 -KVCGYYKLD-----------SLPVVLVIDPITGEKMRKWCGM---------VDPVSLLEDLL 244 (346)
Q Consensus 203 -~~~~~y~~~-----------~~P~i~iidp~tge~l~~~~G~---------~~~~~~i~~L~ 244 (346)
.++..|++. ..|+..|| + .|.....+.|. .+++++++.|.
T Consensus 103 ~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~ 163 (241)
T 1nm3_A 103 GEFTEGMGMLVGKEDLGFGKRSWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLA 163 (241)
T ss_dssp SHHHHHTTCEEECTTTTCCEEECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred cHHHHHhCceeecccccCcccceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhh
Confidence 234445542 34888888 5 69888887763 24555555554
No 279
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.90 E-value=0.8 Score=33.21 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=36.1
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHHhhcCCC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNW-NLDKAILRFNNNSNN 53 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f~~~~~~ 53 (346)
..+.|.+.+++ |=+.+.|++.|.++++ |+|.|++-.|++...
T Consensus 9 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 9 SPSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp SCSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 34578899998 8999999999999976 999999999987643
No 280
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=87.40 E-value=4.8 Score=40.09 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=57.4
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHH--hccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQT--IRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~--i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
..++..++.+.++||..|+.+.. .+.++ .+ .+..+..++.+ +...++..|++.+.|++.|
T Consensus 115 ~~~~~~i~~f~a~~C~~C~~~~~------~l~~~a~~~-~~v~~~~vd~~--------~~~~~~~~~~i~svPt~~i--- 176 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHNCPDVVQ------ALNLMAVLN-PRIKHTAIDGG--------TFQNEITERNVMGVPAVFV--- 176 (521)
T ss_dssp CCSCEEEEEEECTTCSSHHHHHH------HHHHHHHHC-TTEEEEEEETT--------TCHHHHHHTTCCSSSEEEE---
T ss_pred cCCCcceEEEECCCCcCcHHHHH------HHHHHHhHc-CceEEEEEech--------hhHHHHHHhCCCccCEEEE---
Confidence 34667788888999999998742 23222 23 46777777766 3356899999999999976
Q ss_pred CCCceEEEEeCCCChHHHHHHHHH
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.|+.+. .|..+.+++++.|..
T Consensus 177 -~g~~~~--~G~~~~~~l~~~l~~ 197 (521)
T 1hyu_A 177 -NGKEFG--QGRMTLTEIVAKVDT 197 (521)
T ss_dssp -TTEEEE--ESCCCHHHHHHHHCC
T ss_pred -CCEEEe--cCCCCHHHHHHHHhh
Confidence 577664 488887777766543
No 281
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=87.38 E-value=5 Score=35.98 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=34.4
Q ss_pred HHHHhhcCCCC---------CceEEEEeCCCCceEEEEeC-----CCChHHHHHHHHHHHHcC
Q 036413 202 RKVCGYYKLDS---------LPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 202 ~~~~~~y~~~~---------~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~~fl~~~ 250 (346)
..++..|++.. .|.+.|||+ .|.....+.+ ..+.+++++.|.......
T Consensus 117 ~~vak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~ 178 (224)
T 3keb_A 117 RDFHKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQQA 178 (224)
T ss_dssp TTHHHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcc
Confidence 35666677632 699999997 5888776542 356888998888776554
No 282
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=87.05 E-value=1 Score=36.71 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
..++|.+|+++ |=+.+.|+.-|..+++|++.|+...|...
T Consensus 76 ~~~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 76 FLQLMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 34679999999 89999999999999999999999888643
No 283
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=86.78 E-value=3.5 Score=34.14 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=42.3
Q ss_pred CcEEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeC-CCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 181 SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDP-ITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 181 ~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp-~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
..++|..++.+ ..+..+++..+++. .+|.|+|++. ..+.+...-.|.++++.+.+-+..|++.
T Consensus 63 gki~Fv~vd~~------~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~G 128 (147)
T 3bj5_A 63 GKILFAFIDSD------HTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEG 128 (147)
T ss_dssp TTCEEEEECTT------CGGGHHHHHHTTCCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTT
T ss_pred CceEEEEEecc------hHhHHHHHHHcCCCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcC
Confidence 56777777665 34555688889997 4999999995 3444433223677887666666666654
No 284
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=86.18 E-value=0.95 Score=36.00 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=50.0
Q ss_pred EEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceE
Q 036413 148 WLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKM 227 (346)
Q Consensus 148 ~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l 227 (346)
..+|.+..+||..|..+. +.+.++..+.++-|-.+++++ ++ .++..|++. .|.|.++. .|+.+
T Consensus 30 ~~vv~y~~~~C~~C~~a~------~~L~~l~~e~~i~~~~vDId~-----d~---~l~~~ygv~-VP~l~~~~--dG~~v 92 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMI------ASLRVLQKKSWFELEVINIDG-----NE---HLTRLYNDR-VPVLFAVN--EDKEL 92 (107)
T ss_dssp CCEEEEECSSCHHHHHHH------HHHHHHHHHSCCCCEEEETTT-----CH---HHHHHSTTS-CSEEEETT--TTEEE
T ss_pred cEEEEEeCCCChhHHHHH------HHHHHHHHhcCCeEEEEECCC-----CH---HHHHHhCCC-CceEEEEE--CCEEE
Confidence 347778889999998773 333333331246666777772 33 366778886 99987654 47765
Q ss_pred EEEeCCCChHHHHHHH
Q 036413 228 RKWCGMVDPVSLLEDL 243 (346)
Q Consensus 228 ~~~~G~~~~~~~i~~L 243 (346)
..|..+++++.+.|
T Consensus 93 --~~g~~~~~~L~~~L 106 (107)
T 2fgx_A 93 --CHYFLDSDVIGAYL 106 (107)
T ss_dssp --ECSSCCCHHHHHHH
T ss_pred --EecCCCHHHHHHHh
Confidence 35777877665544
No 285
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=84.66 E-value=0.32 Score=36.71 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=33.7
Q ss_pred eEEEEEcCCCc-cc-------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413 292 CRIGVRLPDGQ-EA-------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 292 trIqiRlpdG~-ri-------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~ 343 (346)
-.|+||.|+|. || . ....|.+...+|+. ..+....+.|+++.||+++.+++
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~-~~l~~~~~~~l~~lgl~hGd~l~ 76 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKT-GEITASSSKSLHLLKIKHGDLLF 76 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGG-GGSSSCCCCTTTTTCCCTTCCEE
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCC-CcccCCCCCCHHHcCCCCCCEEE
Confidence 46899999995 45 1 12356666666641 33434478899999998766554
No 286
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=84.56 E-value=3 Score=36.39 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=56.8
Q ss_pred hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCC--------------------------
Q 036413 144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDD-------------------------- 195 (346)
Q Consensus 144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~-------------------------- 195 (346)
...|..+|.+.+++|..|+.|... +.++.+ . .+++..+.....+.
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~~~~-~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~ 156 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYCHLLHQQ------LKEYND-LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGN 156 (211)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHTT------HHHHHH-TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTC
T ss_pred CCCCEEEEEEECCCCHhHHHHHHH------HHHHHh-CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 467999999999999999999643 555544 3 33333333210000
Q ss_pred --------CCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413 196 --------DDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL 244 (346)
Q Consensus 196 --------~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~ 244 (346)
..-.+..+++..|++...|++.|. .|+ ++.|..++++|.+.|.
T Consensus 157 ~~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~---nG~---~~~G~~~~~~l~~~l~ 207 (211)
T 1t3b_A 157 LPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALE 207 (211)
T ss_dssp CCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCCcCCEEEEe---CCE---EecCCCCHHHHHHHHH
Confidence 001134566788999999999883 465 4579888877766554
No 287
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=84.54 E-value=0.99 Score=32.76 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=38.6
Q ss_pred EEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceE
Q 036413 151 VNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKM 227 (346)
Q Consensus 151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l 227 (346)
+.+..+||..|+.+. +.+.+++++.+.-+--++++. +.+...++..|++.+.|++.| .|+.+
T Consensus 5 ~~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~gv~~vPt~~i----~g~~~ 66 (80)
T 2k8s_A 5 AIFYHAGCPVCVSAE------QAVANAIDPSKYTVEIVHLGT-----DKARIAEAEKAGVKSVPALVI----DGAAF 66 (80)
T ss_dssp EEEEECSCHHHHHHH------HHHHHHSCTTTEEEEEEETTT-----CSSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred EEEeCCCCCchHHHH------HHHHHHHHhcCCeEEEEEecC-----ChhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence 444678999999884 445667762222233334441 123456778899999999876 46654
No 288
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=84.45 E-value=1.7 Score=30.55 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=36.4
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
+.-++.|++.|++ |-|.+.|++-|..++.|++.|-+.-.+-
T Consensus 5 ~p~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 5 PQLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CCChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4456789999999 9999999999999999999999877663
No 289
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.84 E-value=1.4 Score=32.37 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=37.8
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
.+..+.+.++.++=-.-|.++-+..|++|+||++.||+..++.
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3567788888888788899999999999999999999988874
No 290
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=83.51 E-value=2.7 Score=37.08 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=24.7
Q ss_pred CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHH
Q 036413 212 SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSF 246 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~f 246 (346)
..|.+.|||| .|.....+.|. .+.++++..|...
T Consensus 127 ~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 127 TCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp ECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred ccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 3699999997 58887776542 3567777777654
No 291
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=82.30 E-value=2.5 Score=36.38 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=42.4
Q ss_pred cCcEEEEE-ecCCCCccccc--cccccCCCHHHHHHhccCcEE-EEEeecCCCCCCCChH-HH-----------------
Q 036413 145 ENKWLLVN-LQSPKEFTSHT--LNRDTWADEAVSQTIRASNFI-FWQVYDDDDDDDDDSE-CR----------------- 202 (346)
Q Consensus 145 ~~K~LlV~-l~~~~~f~c~~--lnRdvw~~~~V~~~i~~~nFV-fw~~~~~~~~~~~~~e-g~----------------- 202 (346)
.+||++|+ +-..||+.|.. +. .+ ++...+|-. .++. ++.++.+ +++ ..
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~~e~p-~l--~~~~~~~~~-~gv~~vv~Is~d------~~~~~~~f~~~~~~~~~fp~l~D 124 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSLNHLP-GY--LENRDAILA-RGVDDIAVVAVN------DLHVMGAWATHSGGMGKIHFLSD 124 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHH-HH--HHTHHHHHT-TTCCEEEEEESS------CHHHHHHHHHHHTCTTTSEEEEC
T ss_pred CCCCEEEEEEcCCCCCCcCHHHHH-HH--HHHHHHHHH-cCCCEEEEEECC------CHHHHHHHHHHhCCCCceEEEEc
Confidence 35665544 45889999976 21 10 111122223 5666 7777666 432 22
Q ss_pred ---HHHhhcCCC-----------CCceEEEEeCCCCceEEEEeC
Q 036413 203 ---KVCGYYKLD-----------SLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 203 ---~~~~~y~~~-----------~~P~i~iidp~tge~l~~~~G 232 (346)
.++..|++. ..|+..||+ .|.....+.|
T Consensus 125 ~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId--dG~I~~~~~~ 166 (184)
T 3uma_A 125 WNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE--DGVVKALNIE 166 (184)
T ss_dssp TTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE--TTEEEEEEEC
T ss_pred CchHHHHHcCCceeccccCCcccceeEEEEEC--CCEEEEEEEe
Confidence 244445542 357788885 6888888765
No 292
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=81.90 E-value=2.7 Score=37.62 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=60.0
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC---------------------- 201 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg---------------------- 201 (346)
.+||++++++ ..+++.|..=-..+ ++...+|-+ .+..+++++.+ +...
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~~f~~-~g~~vigiS~D------s~~sh~aw~~~~~~~~~~~~l~fpll 121 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPTEIIAF--SEAAKKFEE-QGAQVLFASTD------SEYSLLAWTNIPRKEGGLGPINIPLL 121 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSCEE
T ss_pred CCCeEEEEEEcCCCCCcCchhhhHH--HHhHHhhcc-CCceEEEeecC------chhhHHHHHHHHHHhCCccCcccceE
Confidence 5799999998 67888885432221 233444555 79999999988 4332
Q ss_pred ----HHHHhhcCC------CCCceEEEEeCCCCceEEEEe-C---CCChHHHHHHHHH
Q 036413 202 ----RKVCGYYKL------DSLPVVLVIDPITGEKMRKWC-G---MVDPVSLLEDLLS 245 (346)
Q Consensus 202 ----~~~~~~y~~------~~~P~i~iidp~tge~l~~~~-G---~~~~~~~i~~L~~ 245 (346)
..++..|++ -.++.+.|||| .|..-..+. . --+.+++|..|..
T Consensus 122 sD~~~~vak~YGv~~~~~g~~~R~tFiID~-~G~Ir~~~v~~~~~grn~dEiLr~l~A 178 (216)
T 3sbc_A 122 ADTNHSLSRDYGVLIEEEGVALRGLFIIDP-KGVIRHITINDLPVGRNVDEALRLVEA 178 (216)
T ss_dssp ECTTSHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred eCCCCHHHHHcCCeeccCCceeeEEEEECC-CCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 345666766 14789999998 577554442 1 1367888877765
No 293
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=80.83 E-value=3.1 Score=28.09 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
-++.|...|+. |-|.+.|++-|..++.|+|.|-+.-.+
T Consensus 4 ~e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 4 LSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 35678999998 999999999999999999999886554
No 294
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=80.08 E-value=4.4 Score=34.38 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=14.8
Q ss_pred CCceEEEEeCCCCceEEEEeC
Q 036413 212 SLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 212 ~~P~i~iidp~tge~l~~~~G 232 (346)
..|...||| .|.....+.+
T Consensus 137 ~~r~tfvID--dG~I~~~~v~ 155 (173)
T 3mng_A 137 LKRFSMVVQ--DGIVKALNVE 155 (173)
T ss_dssp BCCEEEEEE--TTEEEEEEEC
T ss_pred eEEEEEEEE--CCEEEEEEEe
Confidence 359999999 6888877755
No 295
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=79.41 E-value=1.8 Score=34.31 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHH
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNWNLDKAIL 45 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~ 45 (346)
.+.|.--|+- +|+|.+.|+..|+.|||||=.||-
T Consensus 66 ~edi~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 66 EDDIELVMNQ-TGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3457777888 899999999999999999999985
No 296
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=79.17 E-value=11 Score=33.21 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=54.3
Q ss_pred cEEEEEe-cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH------------------------
Q 036413 147 KWLLVNL-QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC------------------------ 201 (346)
Q Consensus 147 K~LlV~l-~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg------------------------ 201 (346)
+|++++. -..+|+.|..--..+ +....+|-+ .++-+++++++ +.+.
T Consensus 32 ~~vvL~~~~a~~cp~C~~el~~l--~~l~~~f~~-~~v~vi~IS~D------~~~~~~~~~~~i~~~~~~~~~~~~~fpi 102 (224)
T 1prx_A 32 SWGILFSHPRDFTPVCTTELGRA--AKLAPEFAK-RNVKLIALSID------SVEDHLAWSKDINAYNSEEPTEKLPFPI 102 (224)
T ss_dssp SEEEEEEESCSSCHHHHHHHHHH--HHHHHHHHT-TTEEEEEEESS------CHHHHHHHHHHHHHHTTSCCCSCCSSCE
T ss_pred CeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHH-CCCEEEEEcCC------CHHHHHHHHHHHHHhhCcccccCcCcce
Confidence 4766555 467888886432111 111222333 67878887777 3321
Q ss_pred -----HHHHhhcCCC------------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHHH
Q 036413 202 -----RKVCGYYKLD------------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSFM 247 (346)
Q Consensus 202 -----~~~~~~y~~~------------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~fl 247 (346)
..++..|++. ..|++.|||| .|.....+.|. -+.++++..|....
T Consensus 103 l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eil~~i~~l~ 168 (224)
T 1prx_A 103 IDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISLQ 168 (224)
T ss_dssp EECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred eecCchHHHHHhCCCCcccccCCCccccceEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 2344556552 3799999997 58888777653 25677777776643
No 297
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=78.79 E-value=2.3 Score=35.74 Aligned_cols=44 Identities=9% Similarity=-0.176 Sum_probs=25.4
Q ss_pred cCcEEEEEec-CCCCccccc-cccccCCCHHHHHHhccCcE-EEEEeecC
Q 036413 145 ENKWLLVNLQ-SPKEFTSHT-LNRDTWADEAVSQTIRASNF-IFWQVYDD 191 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~-lnRdvw~~~~V~~~i~~~nF-Vfw~~~~~ 191 (346)
.+||++|++. ..||..|.. -...+ ++...+|-+ .++ .++.++.+
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l--~~~~~~~~~-~gv~~vv~Is~d 76 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGY--VEQAAAIHG-KGVDIIACMAVN 76 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHH--HHTHHHHHH-TTCCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHH-CCCCEEEEEeCC
Confidence 5688888876 789999976 11110 111222333 567 67777666
No 298
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=78.48 E-value=5.2 Score=35.78 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=61.8
Q ss_pred cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413 145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------- 200 (346)
Q Consensus 145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------- 200 (346)
.+||++++++ ..+++.|..=..++ ++...+|-+ .+..+++++.+ +..
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~eF~~-~g~~vigiS~D------s~~sh~~w~~~~~~~~~~~~l~fpll 125 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTEVIAF--SDSVSRFNE-LNCEVLACSID------SEYAHLQWTLQDRKKGGLGTMAIPIL 125 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHH--HTTHHHHHT-TTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSSCEE
T ss_pred CCCEEEEEEecccCCCCCchhHhhH--HHHHhhhcc-CCcEEEEeeCC------chhhHHHHhhhhHHhcCccccccccc
Confidence 5799999998 56788875432221 223344555 89999999988 433
Q ss_pred ---HHHHHhhcCC------CCCceEEEEeCCCCceEEEEe-CC---CChHHHHHHHHH--HHHcC
Q 036413 201 ---CRKVCGYYKL------DSLPVVLVIDPITGEKMRKWC-GM---VDPVSLLEDLLS--FMESG 250 (346)
Q Consensus 201 ---g~~~~~~y~~------~~~P~i~iidp~tge~l~~~~-G~---~~~~~~i~~L~~--fl~~~ 250 (346)
...+++.|++ -.+-.+.|||| .|.....|. .. -..+++|..|.. +.+.+
T Consensus 126 sD~~~~va~~yGv~~~~~g~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ~~~~~ 189 (219)
T 3tue_A 126 ADKTKNIARSYGVLEESQGVAYRGLFIIDP-HGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKH 189 (219)
T ss_dssp ECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcccHHHHHcCCcccCCCeeEEEEEEECC-CCeEEEEEEecCCCCCCHHHHHHHHHHhhhHHhc
Confidence 2335666776 13568899998 587666552 11 367888887765 34444
No 299
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=77.07 E-value=7.2 Score=32.82 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=31.5
Q ss_pred HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.+..+++...|++.| .|+.+....|..+++.|...|...+..
T Consensus 144 ~a~~~gv~gtPt~~v----ng~~~~~~~G~~~~e~l~~~i~~l~~k 185 (192)
T 3h93_A 144 LAMAYQVTGVPTMVV----NGKYRFDIGSAGGPEETLKLADYLIEK 185 (192)
T ss_dssp HHHHHTCCSSSEEEE----TTTEEEEHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEEE----CCEEEecccccCCHHHHHHHHHHHHHH
Confidence 446677899999876 477765556888888888888777653
No 300
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.84 E-value=5.9 Score=31.11 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=30.8
Q ss_pred CCeeEEEEEcCC----Cccc---------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCce-eE
Q 036413 289 NLVCRIGVRLPD----GQEA---------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNS-VI 341 (346)
Q Consensus 289 ~~~trIqiRlpd----G~ri---------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~-~v 341 (346)
.+.+.|+||+|+ |+.+ . .+...+|+-. | +.| +.+.||++.||++. +|
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~--G--KiL--~D~~TL~~y~I~~gsti 86 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN--K--KQL--QLGKTLEEQGVAHNVKA 86 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET--T--EEC--CTTSBHHHHTCCSSEEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC--C--eEC--CCCCcHHHcCCCCCCEE
Confidence 568899999999 5554 0 1233444422 2 445 44679999999954 45
Q ss_pred EE
Q 036413 342 LV 343 (346)
Q Consensus 342 l~ 343 (346)
+|
T Consensus 87 ~v 88 (100)
T 1wju_A 87 MV 88 (100)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 301
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=72.14 E-value=11 Score=26.02 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=39.3
Q ss_pred EEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEE
Q 036413 151 VNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKW 230 (346)
Q Consensus 151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~ 230 (346)
+.+..++|..|+.+ +.++++.+.-|-.++++. .++.......|++.+.|.+.+ + |+. +
T Consensus 4 ~~y~~~~C~~C~~~----------~~~l~~~~i~~~~~di~~-----~~~~~~~~~~~~~~~vP~l~~-~---g~~---~ 61 (75)
T 1r7h_A 4 TLYTKPACVQCTAT----------KKALDRAGLAYNTVDISL-----DDEARDYVMALGYVQAPVVEV-D---GEH---W 61 (75)
T ss_dssp EEEECTTCHHHHHH----------HHHHHHTTCCCEEEETTT-----CHHHHHHHHHTTCBCCCEEEE-T---TEE---E
T ss_pred EEEeCCCChHHHHH----------HHHHHHcCCCcEEEECCC-----CHHHHHHHHHcCCCccCEEEE-C---CeE---E
Confidence 44567889999765 344441233233345552 444444445789999999873 3 542 5
Q ss_pred eCCCChHHHHHH
Q 036413 231 CGMVDPVSLLED 242 (346)
Q Consensus 231 ~G~~~~~~~i~~ 242 (346)
.|+ +++++.+.
T Consensus 62 ~g~-~~~~l~~~ 72 (75)
T 1r7h_A 62 SGF-RPERIKQL 72 (75)
T ss_dssp ESC-CHHHHHHH
T ss_pred cCC-CHHHHHHH
Confidence 564 56554433
No 302
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=71.51 E-value=3.6 Score=36.37 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=35.6
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
...+|....+. ||...-.|+.-|+.+|||++.|+..--..
T Consensus 3 ~a~~VKeLRe~-TGagmmdCKkAL~e~~GD~ekAie~LR~k 42 (196)
T 1aip_C 3 QMELIKKLREA-TGAGMMDVKRALEDAGWDEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 35678899999 99999999999999999999999877653
No 303
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=71.10 E-value=5.9 Score=32.04 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=38.3
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~ 50 (346)
+.+.+.|.+++++ |=+...|+.-|.+++.|.+.|++-.|..
T Consensus 6 ~~e~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 6 PSERQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 6788999999999 9999999999999999999999988875
No 304
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.07 E-value=5.6 Score=30.96 Aligned_cols=57 Identities=28% Similarity=0.509 Sum_probs=30.7
Q ss_pred CCCCCCCCCCeeEEEEEcCCCccc-----c--------------C---CcceEEecCCCCCCCCccCCcccchhhcCCCc
Q 036413 281 EEPLQVARNLVCRIGVRLPDGQEA-----N--------------Q---TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN 338 (346)
Q Consensus 281 ~EP~~~~~~~~trIqiRlpdG~ri-----~--------------~---~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n 338 (346)
+||.. .+....+|.||..+|+.+ . . ....+|.- .| +.| +.+.||.+.|+++
T Consensus 14 ~~~~~-~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~G--k~L--~D~~tL~~ygI~~ 86 (106)
T 1ttn_A 14 PEPPP-NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF--SG--RPL--TDKMKFEELKIPK 86 (106)
T ss_dssp --------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE--TT--EEC--CTTSHHHHCCCSS
T ss_pred CCCCC-CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE--CC--EEC--CCCCcHHHcCCCC
Confidence 55555 455678899999999775 0 0 12223322 22 444 3468999999985
Q ss_pred -eeEEEE
Q 036413 339 -SVILVT 344 (346)
Q Consensus 339 -~~vl~~ 344 (346)
++|.++
T Consensus 87 g~ti~lv 93 (106)
T 1ttn_A 87 DYVVQVI 93 (106)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 555444
No 305
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=69.69 E-value=11 Score=27.84 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=33.2
Q ss_pred CCeeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCceeEEEEe
Q 036413 289 NLVCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTL 345 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~~~ 345 (346)
+...+|.||..+|+.+ .. ...-+|.- - ++.|. .+.||.+.|+.+++|.++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~--~--Gk~L~--d~~tL~~~~i~g~~i~l~~ 75 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY--Q--GRVLQ--DDKKLQEYNVGGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--T--TEECC--TTSBGGGGTCTTEEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--C--CeECC--CCCCHHHcCCCCcEEEEEe
Confidence 4578899999999875 01 12234432 1 24553 3679999999877777653
No 306
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=68.59 E-value=12 Score=28.46 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc--CCCCCceEEEEeCCCCceEEEEeC
Q 036413 155 SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY--KLDSLPVVLVIDPITGEKMRKWCG 232 (346)
Q Consensus 155 ~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y--~~~~~P~i~iidp~tge~l~~~~G 232 (346)
.++|+.|... +++|++.+.=|--++++. ++++.+..... +..+.|.|.|-| |..+ .|
T Consensus 11 ~~~Cp~C~~a----------K~~L~~~gi~y~~idi~~-----d~~~~~~~~~~~~G~~tVP~I~i~D---g~~l---~~ 69 (92)
T 2lqo_A 11 TSWCGYCLRL----------KTALTANRIAYDEVDIEH-----NRAAAEFVGSVNGGNRTVPTVKFAD---GSTL---TN 69 (92)
T ss_dssp CTTCSSHHHH----------HHHHHHTTCCCEEEETTT-----CHHHHHHHHHHSSSSSCSCEEEETT---SCEE---ES
T ss_pred CCCCHhHHHH----------HHHHHhcCCceEEEEcCC-----CHHHHHHHHHHcCCCCEeCEEEEeC---CEEE---eC
Confidence 4689998654 677773344344456663 67776655433 567899998755 4433 34
Q ss_pred CCChHHHHHHHHHHH
Q 036413 233 MVDPVSLLEDLLSFM 247 (346)
Q Consensus 233 ~~~~~~~i~~L~~fl 247 (346)
.+++++.+.|.+..
T Consensus 70 -~~~~el~~~L~el~ 83 (92)
T 2lqo_A 70 -PSADEVKAKLVKIA 83 (92)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhc
Confidence 46788888777653
No 307
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=68.49 E-value=12 Score=27.66 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=39.1
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
.+..+.|.+-.+|=-.-.....+.+|+.+|.|+|.+|+..|++.
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 56678888888887778899999999999999999999999953
No 308
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=68.16 E-value=11 Score=28.07 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=31.6
Q ss_pred CCCeeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 288 RNLVCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 288 ~~~~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
++...+|.||..+|+.+ .. ....+|.- - ++.|. .+.||.+.|+++ ++|.++
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~--Gk~L~--D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--A--GKQLE--DGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE--T--TEECC--TTCBTGGGTCCTTCEEEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE--C--CeECC--CcCcHHHCCCCCCCEEEEE
Confidence 45678999999999875 00 12223332 1 24453 368999999995 455544
No 309
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=68.05 E-value=5.1 Score=31.63 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=46.8
Q ss_pred cccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc---EEEEEeecCCCCCCCChH----H
Q 036413 129 LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN---FIFWQVYDDDDDDDDDSE----C 201 (346)
Q Consensus 129 l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n---FVfw~~~~~~~~~~~~~e----g 201 (346)
.|......+.++.+.+..+ |+| +..++|..|+.+ ++.++++.+ .-|.-++++. .++ -
T Consensus 8 ~~~~~~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~a---------lk~~L~~~~~~~i~~~~vdid~-----~~~~~~~~ 71 (118)
T 3c1r_A 8 HMVSQETIKHVKDLIAENE-IFV-ASKTYCPYCHAA---------LNTLFEKLKVPRSKVLVLQLND-----MKEGADIQ 71 (118)
T ss_dssp CCSCHHHHHHHHHHHHHSS-EEE-EECSSCHHHHHH---------HHHHHTTSCCCGGGEEEEEGGG-----STTHHHHH
T ss_pred cccCHHHHHHHHHHHccCc-EEE-EEcCCCcCHHHH---------HHHHHHHcCCCCCCeEEEECcc-----CCChHHHH
Confidence 3555666666666666666 333 556799999764 356666223 3344455552 222 2
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceE
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKM 227 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l 227 (346)
..+...|+..+.|.| +|+ |+.+
T Consensus 72 ~~l~~~~g~~tvP~v-fi~---g~~i 93 (118)
T 3c1r_A 72 AALYEINGQRTVPNI-YIN---GKHI 93 (118)
T ss_dssp HHHHHHHSCCSSCEE-EET---TEEE
T ss_pred HHHHHHhCCCCcCEE-EEC---CEEE
Confidence 346778899999987 444 5543
No 310
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=66.13 E-value=24 Score=30.74 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=41.9
Q ss_pred hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413 143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI 222 (346)
Q Consensus 143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~ 222 (346)
+...+++.+.+.+..++. ..+.+.++.. ...|....-.+ + -..+++.|+++.||+++++++
T Consensus 154 ~~~~~~~al~f~~~~~~~---------~~~~~~d~~~-~~~i~v~~~~~------~--~~~l~~~f~v~~~Pslvl~~~- 214 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYL---------AREVALDLSQ-HKGVAVRRVLN------T--EANVVRKFGVTDFPSCYLLFR- 214 (244)
T ss_dssp HCCCSEEEEEEECTTCCH---------HHHHHHHTTT-CTTEEEEEEET------T--CHHHHHHHTCCCSSEEEEEET-
T ss_pred cCCCceEEEEEEECCcch---------HHHHHHHhcc-CCceEEEEEeC------c--hHHHHHHcCCCCCCeEEEEeC-
Confidence 367788888777654322 2233445554 33343333222 1 267899999999999999996
Q ss_pred CCceEEE
Q 036413 223 TGEKMRK 229 (346)
Q Consensus 223 tge~l~~ 229 (346)
.|+....
T Consensus 215 ~g~~~~~ 221 (244)
T 3q6o_A 215 NGSVSRV 221 (244)
T ss_dssp TSCEEEC
T ss_pred CCCeEee
Confidence 5664433
No 311
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=66.08 E-value=4.7 Score=37.74 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=35.4
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
...+|.+..+. ||...-.|+.-|+.+|||+|.|+..--.
T Consensus 4 ta~~VKeLRe~-TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 4 SKELLMKLRRK-TGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35678899999 9999999999999999999999997776
No 312
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=66.07 E-value=14 Score=25.35 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=36.6
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
-+++|.|-..+-.|.+...-++=|+++|-|++.||+..++..
T Consensus 9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 467888888888999999999999999999999999888743
No 313
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=65.07 E-value=3.2 Score=40.17 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=37.3
Q ss_pred hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
...+.|.+.+++ |-+.+.|+.-|.+++||++.|++-.|++-
T Consensus 167 ~~~~~i~~l~~M--Gf~~~~~~~AL~a~~nn~~~A~e~L~~gi 207 (368)
T 1oqy_A 167 EYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTGI 207 (368)
T ss_dssp THHHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTTTSS
T ss_pred chHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 467789999999 89999999999999999999999888753
No 314
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=64.87 E-value=7.6 Score=27.57 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=38.6
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
++.+..++|..|+.+ +.++++.+.-|..++++. +++.......|++.+.|++ +++ |+.
T Consensus 3 v~~f~~~~C~~C~~~----------~~~l~~~~i~~~~vdi~~-----~~~~~~~~~~~g~~~vP~~-~~~---g~~--- 60 (81)
T 1h75_A 3 ITIYTRNDCVQCHAT----------KRAMENRGFDFEMINVDR-----VPEAAEALRAQGFRQLPVV-IAG---DLS--- 60 (81)
T ss_dssp EEEEECTTCHHHHHH----------HHHHHHTTCCCEEEETTT-----CHHHHHHHHHTTCCSSCEE-EET---TEE---
T ss_pred EEEEcCCCChhHHHH----------HHHHHHCCCCeEEEECCC-----CHHHHHHHHHhCCCccCEE-EEC---CEE---
Confidence 345677899999875 333431222233455653 4565555556899999998 444 543
Q ss_pred EeCCCChHH
Q 036413 230 WCGMVDPVS 238 (346)
Q Consensus 230 ~~G~~~~~~ 238 (346)
+.| .++++
T Consensus 61 ~~g-~~~~~ 68 (81)
T 1h75_A 61 WSG-FRPDM 68 (81)
T ss_dssp EES-CCHHH
T ss_pred Eec-CCHHH
Confidence 345 45543
No 315
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=63.42 E-value=12 Score=34.88 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=30.5
Q ss_pred hhcCCC-CCceEEEEeCCCCceEEE-Ee---CCCChHHHHHHHHHHHH
Q 036413 206 GYYKLD-SLPVVLVIDPITGEKMRK-WC---GMVDPVSLLEDLLSFME 248 (346)
Q Consensus 206 ~~y~~~-~~P~i~iidp~tge~l~~-~~---G~~~~~~~i~~L~~fl~ 248 (346)
+.++++ .+|.++|+++.+|.+... +. |..+++.+.+-|..+++
T Consensus 299 ~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~ 346 (350)
T 1sji_A 299 KTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS 346 (350)
T ss_dssp HHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred hhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence 678887 699999999877755543 32 46788776666666654
No 316
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=62.37 E-value=5.4 Score=28.55 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=43.1
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCCh-HHHHHHhhcC--CCCCceEEEEeCCCCc
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDS-ECRKVCGYYK--LDSLPVVLVIDPITGE 225 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~-eg~~~~~~y~--~~~~P~i~iidp~tge 225 (346)
++.+..++|..|+.+.+ .+.++..+ .++-+..++++. ++ ....+...|+ +.++|.| +++ |+
T Consensus 3 v~~f~~~~C~~C~~~~~------~l~~l~~~~~~i~~~~vdi~~-----~~~~~~~l~~~~~~~~~~vP~i-~~~---g~ 67 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD------LAEKLSNERDDFQYQYVDIRA-----EGITKEDLQQKAGKPVETVPQI-FVD---QQ 67 (85)
T ss_dssp EEEECCTTSTHHHHHHH------HHHHHHHHHSSCEEEEECHHH-----HTCCSHHHHHHTCCCSCCSCEE-EET---TE
T ss_pred EEEEeCCCCCCHHHHHH------HHHHHHhcCCCceEEEEeccc-----ChHHHHHHHHHhCCCCceeCeE-EEC---CE
Confidence 45567889999988732 22222210 346666666651 11 1246788888 8899998 444 65
Q ss_pred eEEEEeCCCChHHHHHHHHH
Q 036413 226 KMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 226 ~l~~~~G~~~~~~~i~~L~~ 245 (346)
.+ .|. +++.+.+.+
T Consensus 68 ~i---~~~---~~l~~~~~~ 81 (85)
T 1ego_A 68 HI---GGY---TDFAAWVKE 81 (85)
T ss_dssp EE---ESS---HHHHHHHHH
T ss_pred EE---ECH---HHHHHHHHH
Confidence 44 342 455555544
No 317
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=62.04 E-value=67 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=29.8
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.+.+..+++...|++ ||+ |+.+ +.|..+++.|...|...+..
T Consensus 140 ~~~a~~~gv~gtPt~-vin---g~~~--~~g~~~~~~l~~~i~~~l~~ 181 (195)
T 2znm_A 140 QKLTEQYRIDSTPTV-IVG---GKYR--VIFNNGFDGGVHTIKELVAK 181 (195)
T ss_dssp HHHHHHTTCCSSSEE-EET---TTEE--ECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCeE-EEC---CEEE--EcCCCCHHHHHHHHHHHHHH
Confidence 345577889999995 554 6543 46767788888888877754
No 318
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=58.03 E-value=4.3 Score=28.43 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=34.6
Q ss_pred hhhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 6 QKKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 6 ~~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
+-.++.+.+.++.++=-.-|.++=+..|.+++||++.||+..+.
T Consensus 8 ~~~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 8 EENERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33678889999999988999999999999999999999987664
No 319
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=56.12 E-value=9.1 Score=31.95 Aligned_cols=55 Identities=7% Similarity=-0.080 Sum_probs=30.9
Q ss_pred cEEEEEecCCCCcccccc-ccccCCCHHHHHHhccCcEE-EEEeecCCCCCCCChH-HHHHHhhcCC
Q 036413 147 KWLLVNLQSPKEFTSHTL-NRDTWADEAVSQTIRASNFI-FWQVYDDDDDDDDDSE-CRKVCGYYKL 210 (346)
Q Consensus 147 K~LlV~l~~~~~f~c~~l-nRdvw~~~~V~~~i~~~nFV-fw~~~~~~~~~~~~~e-g~~~~~~y~~ 210 (346)
+.+|+++=..||..|..= ...+ ++...+|-. .++. ++.++.+ +++ ..++++.+++
T Consensus 45 ~vvl~~~~a~wcp~C~~eh~p~l--~~~~~~~~~-~g~~~vv~Is~d------~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSSKHVPPY--KHNIDKFKA-KGVDSVICVAIN------DPYTVNAWAEKIQA 102 (171)
T ss_dssp EEEEEECSCTTCTTHHHHTHHHH--HHTHHHHHH-TTCSEEEEEESS------CHHHHHHHHHHTTC
T ss_pred CEEEEEecCCCCCCCCHHHHHHH--HHHHHHHHH-CCCCEEEEEeCC------CHHHHHHHHHHhCC
Confidence 466778888899999651 1111 111223333 5677 7787777 433 4445555554
No 320
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.12 E-value=29 Score=27.53 Aligned_cols=78 Identities=6% Similarity=0.054 Sum_probs=43.4
Q ss_pred ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHhhcCC
Q 036413 132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCGYYKL 210 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~~y~~ 210 (346)
.-...+.+..+.+..+ |+| +..++|..|+.+.+ +.+-+. -.|..+ +++.+ .+.++. ..+...|++
T Consensus 13 ~~~~~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-------~L~~~~-i~~~~v--did~~--~~~~~~~~~l~~~~g~ 78 (130)
T 2cq9_A 13 ATAPVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMN-VNYKVV--ELDLL--EYGNQFQDALYKMTGE 78 (130)
T ss_dssp SCCHHHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-------HHHHHT-CCCEEE--ETTTS--TTHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-------HHHHcC-CCcEEE--ECcCC--cCcHHHHHHHHHHhCC
Confidence 3445555566655565 444 56789999987631 222233 455544 44410 001222 247788999
Q ss_pred CCCceEEEEeCCCCceE
Q 036413 211 DSLPVVLVIDPITGEKM 227 (346)
Q Consensus 211 ~~~P~i~iidp~tge~l 227 (346)
.++|.|. ++ |+.+
T Consensus 79 ~~vP~l~-i~---G~~i 91 (130)
T 2cq9_A 79 RTVPRIF-VN---GTFI 91 (130)
T ss_dssp CCSSEEE-ET---TEEE
T ss_pred CCcCEEE-EC---CEEE
Confidence 9999984 43 6544
No 321
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=55.08 E-value=27 Score=25.59 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCeeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCceeEEEEe
Q 036413 289 NLVCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTL 345 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~~~ 345 (346)
+...+|.||..+|+.+ .. ...-+|.- - ++.|. .+.||.+.|+.+++|.+++
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~--~--Gk~L~--D~~tL~~~~i~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY--Q--GRVLQ--DDKKLQEYNVGGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--T--TEECC--TTSBGGGGTCTTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--C--CEECC--CCCcHHHcCCCCcEEEEEE
Confidence 4567899999999875 00 12223332 1 24453 3689999999878877764
No 322
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=54.85 E-value=36 Score=31.92 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=38.9
Q ss_pred cEEEEEeecCCCCCCCChHHHHH-HhhcCCC-CCceEEEEeCCCCceEE-EEe---CCCChHHHHHHHHHHHHc
Q 036413 182 NFIFWQVYDDDDDDDDDSECRKV-CGYYKLD-SLPVVLVIDPITGEKMR-KWC---GMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 182 nFVfw~~~~~~~~~~~~~eg~~~-~~~y~~~-~~P~i~iidp~tge~l~-~~~---G~~~~~~~i~~L~~fl~~ 249 (346)
.+.|.-++... .+....+ ...++++ .+|.++|+++.++...+ ... +.++++.+.+-|..|++.
T Consensus 281 ki~F~~id~~~-----~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~G 349 (367)
T 3us3_A 281 DLSIIWIDPDD-----FPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEG 349 (367)
T ss_dssp TCCEEEECGGG-----CTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred ceEEEEECCcc-----chhHHHHHHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcC
Confidence 46666565551 2222222 4557776 79999999987653222 133 357888877777777754
No 323
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=52.96 E-value=39 Score=28.59 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=37.7
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
.+.+..+++...|++.|.. .|+.+..+.|..+++.|.+.|.+.+..+
T Consensus 166 ~~~a~~~gv~g~Pt~~i~~--~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 166 FQRVAQWGISGFPALVVES--GTDRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcccceEEEEE--CCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 4556788999999998875 4776666789889999999998888654
No 324
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=52.40 E-value=34 Score=25.37 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=34.5
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCc---EEEEEeecCCCCCCCChHH-HHHHhhcCCCCCceEEEEeCCCCc
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN---FIFWQVYDDDDDDDDDSEC-RKVCGYYKLDSLPVVLVIDPITGE 225 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n---FVfw~~~~~~~~~~~~~eg-~~~~~~y~~~~~P~i~iidp~tge 225 (346)
++.+..++|..|+.+. .+.+-+. .. |.+.-++.+. +.++. ..+...|+..++|.+ +++ |+
T Consensus 14 v~~f~~~~C~~C~~~~-------~~L~~~~-~~~~~~~~vdi~~~~----~~~~~~~~l~~~~g~~~vP~i-~~~---g~ 77 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQ-------ELLSQLP-FKEGLLEFVDITATS----DTNEIQDYLQQLTGARTVPRV-FIG---KE 77 (105)
T ss_dssp EEEEECSSCHHHHHHH-------HHHHHSC-BCTTSEEEEEGGGST----THHHHHHHHHHHHSCCCSCEE-EET---TE
T ss_pred EEEEEcCCCHhHHHHH-------HHHHHcC-CCCCccEEEEccCCC----CHHHHHHHHHHHhCCCCcCeE-EEC---CE
Confidence 3445678999998762 1112222 33 6665443330 01233 346778899999998 443 65
Q ss_pred eE
Q 036413 226 KM 227 (346)
Q Consensus 226 ~l 227 (346)
.+
T Consensus 78 ~i 79 (105)
T 1kte_A 78 CI 79 (105)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 325
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=52.02 E-value=48 Score=31.09 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=34.6
Q ss_pred CcEEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 181 SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 181 ~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
..+.|.-++.+ . -..++..++++ .+|.|+|++.+.+-.+....|..+++.+.+-|..+++.
T Consensus 268 ~~i~f~~id~~------~--~~~~~~~~gl~~~~~P~i~i~~~~~~y~~~~~~~~~~~~~i~~F~~d~~~G 330 (382)
T 2r2j_A 268 GTINFLHADCD------K--FRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSG 330 (382)
T ss_dssp TTSEEEEEETT------T--THHHHHHTTCCGGGCSEEEEECSSCEEECCCSGGGGSTTHHHHHHHHHHHT
T ss_pred CeeEEEEEchH------H--hHHHHHHcCCCccCCCEEEEEcchhcCCCCccccccCHHHHHHHHHHHHCC
Confidence 45666666544 2 23467888886 69999998863221111123444556555555555544
No 326
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=51.56 E-value=24 Score=27.13 Aligned_cols=69 Identities=6% Similarity=-0.023 Sum_probs=38.7
Q ss_pred HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--Cc---EEEEEeecCCCCCCCC--hHH-HHHHhhc
Q 036413 137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SN---FIFWQVYDDDDDDDDD--SEC-RKVCGYY 208 (346)
Q Consensus 137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~n---FVfw~~~~~~~~~~~~--~eg-~~~~~~y 208 (346)
+.+..+.+..+ +|.+..++|..|+.+ +.++++ -. |...-++.+ . .+. ..+...|
T Consensus 10 ~~~~~~i~~~~--vv~f~~~~Cp~C~~~----------~~~L~~~~~~~~~~~~vdi~~~------~~~~~~~~~l~~~~ 71 (114)
T 2hze_A 10 EFVQQRLANNK--VTIFVKYTCPFCRNA----------LDILNKFSFKRGAYEIVDIKEF------KPENELRDYFEQIT 71 (114)
T ss_dssp HHHHTTCCTTC--EEEEECTTCHHHHHH----------HHHHTTSCBCTTSEEEEEGGGS------SSHHHHHHHHHHHH
T ss_pred HHHHHHhccCC--EEEEEeCCChhHHHH----------HHHHHHcCCCcCceEEEEccCC------CChHHHHHHHHHHh
Confidence 34444444444 344567899999766 333431 12 555433322 1 122 3577889
Q ss_pred CCCCCceEEEEeCCCCceE
Q 036413 209 KLDSLPVVLVIDPITGEKM 227 (346)
Q Consensus 209 ~~~~~P~i~iidp~tge~l 227 (346)
+..+.|.+. ++ |+.+
T Consensus 72 g~~~vP~v~-i~---g~~i 86 (114)
T 2hze_A 72 GGKTVPRIF-FG---KTSI 86 (114)
T ss_dssp SCCSSCEEE-ET---TEEE
T ss_pred CCCCcCEEE-EC---CEEE
Confidence 999999874 43 6654
No 327
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=51.02 E-value=28 Score=26.48 Aligned_cols=76 Identities=9% Similarity=0.109 Sum_probs=42.0
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHH-HHhhcC
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRK-VCGYYK 209 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~-~~~~y~ 209 (346)
..+.+.++...+.++ |.| +..++|..|+.. +.+|++ -.|-..-++... .+.++... +...++
T Consensus 6 ~~~~~~~~~~i~~~~-v~v-y~~~~Cp~C~~~----------~~~L~~~~i~~~~~di~~~~---~~~~~~~~~l~~~~g 70 (113)
T 3rhb_A 6 SRMEESIRKTVTENT-VVI-YSKTWCSYCTEV----------KTLFKRLGVQPLVVELDQLG---PQGPQLQKVLERLTG 70 (113)
T ss_dssp CHHHHHHHHHHHHSS-EEE-EECTTCHHHHHH----------HHHHHHTTCCCEEEEGGGST---THHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCC-EEE-EECCCChhHHHH----------HHHHHHcCCCCeEEEeecCC---CChHHHHHHHHHHhC
Confidence 345666666666677 333 556799999765 344441 345444443320 00133233 445678
Q ss_pred CCCCceEEEEeCCCCceE
Q 036413 210 LDSLPVVLVIDPITGEKM 227 (346)
Q Consensus 210 ~~~~P~i~iidp~tge~l 227 (346)
..++|.| +|+ |+.+
T Consensus 71 ~~tvP~i-fi~---g~~i 84 (113)
T 3rhb_A 71 QHTVPNV-FVC---GKHI 84 (113)
T ss_dssp CCSSCEE-EET---TEEE
T ss_pred CCCcCEE-EEC---CEEE
Confidence 8899999 444 6543
No 328
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=50.78 E-value=51 Score=23.72 Aligned_cols=69 Identities=16% Similarity=0.046 Sum_probs=40.7
Q ss_pred ecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh-HH----HHHHhhcCCCCCceEEEEeCCCCceE
Q 036413 153 LQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS-EC----RKVCGYYKLDSLPVVLVIDPITGEKM 227 (346)
Q Consensus 153 l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~-eg----~~~~~~y~~~~~P~i~iidp~tge~l 227 (346)
+..++|..|+... .+.+-+. -.|-..-++.. +. +. ..+...+...+.|.|.+ + |+
T Consensus 17 y~~~~Cp~C~~~~-------~~L~~~g-i~~~~~~v~~~------~~~~~~~~~~~l~~~~g~~~vP~l~~-~---g~-- 76 (92)
T 3ic4_A 17 YGLSTCPHCKRTL-------EFLKREG-VDFEVIWIDKL------EGEERKKVIEKVHSISGSYSVPVVVK-G---DK-- 76 (92)
T ss_dssp EECTTCHHHHHHH-------HHHHHHT-CCCEEEEGGGC------CHHHHHHHHHHHHHHHSSSCSCEEEE-T---TE--
T ss_pred EECCCChHHHHHH-------HHHHHcC-CCcEEEEeeeC------CccchHHHHHHHHHhcCCCCcCEEEE-C---CE--
Confidence 3567899997652 1222233 45655554433 22 22 56777888899999876 3 54
Q ss_pred EEEeCCCChHHHHHHH
Q 036413 228 RKWCGMVDPVSLLEDL 243 (346)
Q Consensus 228 ~~~~G~~~~~~~i~~L 243 (346)
.+.|+ +++++.+.|
T Consensus 77 -~i~G~-~~~~l~~~l 90 (92)
T 3ic4_A 77 -HVLGY-NEEKLKELI 90 (92)
T ss_dssp -EEESC-CHHHHHHHH
T ss_pred -EEeCC-CHHHHHHHh
Confidence 34575 776665554
No 329
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=50.01 E-value=36 Score=25.64 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=37.9
Q ss_pred HHhhhcCcEEEEEecC----CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHhhcCCCCCc
Q 036413 140 DVGSDENKWLLVNLQS----PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCGYYKLDSLP 214 (346)
Q Consensus 140 ~~Ak~~~K~LlV~l~~----~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~~y~~~~~P 214 (346)
....+.++ ++||..+ ++|..|+.+ +.++++.+.-|--++++. +++. ..+...++..++|
T Consensus 11 ~~~i~~~~-vvvf~~g~~~~~~C~~C~~~----------~~~L~~~~i~~~~vdi~~-----~~~~~~~l~~~~g~~~vP 74 (105)
T 2yan_A 11 KVLTNKAS-VMLFMKGNKQEAKCGFSKQI----------LEILNSTGVEYETFDILE-----DEEVRQGLKAYSNWPTYP 74 (105)
T ss_dssp HHHHTSSS-EEEEESBCSSSBCTTHHHHH----------HHHHHHHTCCCEEEEGGG-----CHHHHHHHHHHHTCCSSC
T ss_pred HHHhccCC-EEEEEecCCCCCCCccHHHH----------HHHHHHCCCCeEEEECCC-----CHHHHHHHHHHHCCCCCC
Confidence 33344445 6666652 789999765 444441222233345542 3343 3466778888999
Q ss_pred eEEEEeCCCCceE
Q 036413 215 VVLVIDPITGEKM 227 (346)
Q Consensus 215 ~i~iidp~tge~l 227 (346)
.|. |+ |+.+
T Consensus 75 ~v~-i~---g~~i 83 (105)
T 2yan_A 75 QLY-VK---GELV 83 (105)
T ss_dssp EEE-ET---TEEE
T ss_pred eEE-EC---CEEE
Confidence 984 44 6543
No 330
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=49.55 E-value=14 Score=30.39 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=35.9
Q ss_pred hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413 199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP 251 (346)
Q Consensus 199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~ 251 (346)
.+..+++..|++...|++.|- .|+ .+.|..+++.|.+.|.+.+.++-
T Consensus 96 ~~~~~la~~~gI~gtPt~vi~---nG~---~i~G~~~~~~l~~~i~~~~~~~~ 142 (147)
T 3gv1_A 96 AETTSLGEQFGFNGTPTLVFP---NGR---TQSGYSPMPQLEEIIRKNQQEGH 142 (147)
T ss_dssp HHHHHHHHHTTCCSSCEEECT---TSC---EEESCCCTTHHHHHHHHTSCC--
T ss_pred HHHHHHHHHhCCCccCEEEEE---CCE---EeeCCCCHHHHHHHHHHHHHhcc
Confidence 456778899999999999982 465 36799999998888887766543
No 331
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=49.19 E-value=28 Score=26.31 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCCCeeEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEE
Q 036413 287 ARNLVCRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 287 ~~~~~trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl 342 (346)
+++....|.||..+|+.+ . .....+|.- .| +.| ..+.|++++|+.+.+.+
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif--~G--k~L--~d~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF--EG--QRI--ADNHTPKELGMEEEDVI 88 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE--TT--EEC--CTTCCHHHHTCCTTCEE
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE--CC--eEc--CCCCCHHHCCCCCCCEE
Confidence 345678899999999875 0 112334432 23 455 34579999999855443
No 332
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=48.61 E-value=39 Score=23.98 Aligned_cols=48 Identities=31% Similarity=0.466 Sum_probs=29.4
Q ss_pred eeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 291 VCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 291 ~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
...|.||.++|+.+ .. ....+|.- -| +.|. .+.||.+.|+++ ++|.++
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~G--~~L~--d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF--EG--KPLE--DQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE--TT--EECC--TTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE--CC--EECC--CCCcHHHCCCCCCCEEEEE
Confidence 46789999999865 01 12333432 22 4453 368999999994 555544
No 333
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=48.37 E-value=12 Score=31.95 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=24.4
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILR 46 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~ 46 (346)
.++..++...++. +--+.+.+...|..|++|++.|+.+
T Consensus 100 ~~R~~K~~eL~s~-G~~~~~~~~~aL~~~~Gdv~~Al~e 137 (162)
T 4dbg_B 100 RTRRRKVQELQSL-GFGPEEGSLQALFQHGGDVSRALTE 137 (162)
T ss_dssp HHHHHHHHHHHHT-TCCGGGTHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCchHHHHHHHHHHcCCcHHHHHHH
Confidence 3455566666666 6666666666666666666666654
No 334
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=48.08 E-value=37 Score=29.87 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=36.5
Q ss_pred EEEEEeecCCCCCCCChHHHHHHhhcCC----CCCceEEEEeCCCCceEEEEeCCCChHH--HHHHHHHHHHc
Q 036413 183 FIFWQVYDDDDDDDDDSECRKVCGYYKL----DSLPVVLVIDPITGEKMRKWCGMVDPVS--LLEDLLSFMES 249 (346)
Q Consensus 183 FVfw~~~~~~~~~~~~~eg~~~~~~y~~----~~~P~i~iidp~tge~l~~~~G~~~~~~--~i~~L~~fl~~ 249 (346)
+.|.-++.+ . -+ +++..|++ ..+|.|+|++. .|.+.. ..+.++.+. +.+-|..|++.
T Consensus 169 ~~F~~~d~~------~-~~-~~~~~fgl~~~~~~~P~v~i~~~-~~~ky~-~~~~~t~~~~~i~~F~~~~~~G 231 (252)
T 2h8l_A 169 LNFAVASRK------T-FS-HELSDFGLESTAGEIPVVAIRTA-KGEKFV-MQEEFSRDGKALERFLQDYFDG 231 (252)
T ss_dssp CEEEEEETT------T-TH-HHHGGGTCCCCSCSSCEEEEECT-TSCEEE-CCSCCCTTSHHHHHHHHHHHHT
T ss_pred EEEEEEchH------H-HH-HHHHHcCCCCccCCCCEEEEEeC-cCcEec-CCcccCcchHHHHHHHHHHHCC
Confidence 666666544 2 23 47888888 36999999985 565543 456667665 55555555544
No 335
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=47.90 E-value=32 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=14.7
Q ss_pred CCccCCcccchhhcCCCce-eEEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILVT 344 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~~ 344 (346)
+.| +.+.||++.|+++. +|.+.
T Consensus 48 ~~L--~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 48 KQM--NDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEC--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEC--CCCCcHHHcCCCCCCEEEEE
Confidence 445 34689999999854 44443
No 336
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=47.33 E-value=33 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCccCCcccchhhcCCCc-eeEEEE
Q 036413 321 KPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
+.|. .+.||++.|+++ ++|.+.
T Consensus 48 ~~L~--d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 48 KQLE--DGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EECC--TTCBTGGGTCCTTCEEEEE
T ss_pred eECC--CCCcHHHcCCCCCCEEEEE
Confidence 4453 368999999984 455443
No 337
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=43.93 E-value=27 Score=25.25 Aligned_cols=50 Identities=6% Similarity=0.093 Sum_probs=31.1
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhc-CCCCCceEE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYY-KLDSLPVVL 217 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y-~~~~~P~i~ 217 (346)
++.++.++|..|+.+ +.++++ -.|.. ++++ ......+...+ +..+.|.+.
T Consensus 8 v~~y~~~~C~~C~~~----------~~~L~~~~i~~~~--vdv~------~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 8 IILYTRPNCPYCKRA----------RDLLDKKGVKYTD--IDAS------TSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp EEEESCSCCTTTHHH----------HHHHHHHTCCEEE--ECSC------HHHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHH----------HHHHHHcCCCcEE--EECC------HHHHHHHHHHhCCCCCcCEEE
Confidence 444577899999865 344441 34433 2333 23456677888 899999984
No 338
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=43.64 E-value=34 Score=29.23 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=20.6
Q ss_pred CcEEEEEe-cCCCCccccc--cccccCCCHHHHHHhccCcE-EEEEeecC
Q 036413 146 NKWLLVNL-QSPKEFTSHT--LNRDTWADEAVSQTIRASNF-IFWQVYDD 191 (346)
Q Consensus 146 ~K~LlV~l-~~~~~f~c~~--lnRdvw~~~~V~~~i~~~nF-Vfw~~~~~ 191 (346)
+||++++. =..+|+.|.. ++ . =++...+|-+ .++ .+++++.+
T Consensus 47 Gk~vVL~fyP~~~tp~Ct~~El~-~--f~~~~~ef~~-~g~d~VigIS~D 92 (176)
T 4f82_A 47 GKRVVIFGLPGAFTPTCSAQHVP-G--YVEHAEQLRA-AGIDEIWCVSVN 92 (176)
T ss_dssp TCEEEEEEESCTTCHHHHHTHHH-H--HHHHHHHHHH-TTCCEEEEEESS
T ss_pred CCeEEEEEEcCCCCCCCCHHHHH-H--HHHHHHHHHh-CCCCEEEEEeCC
Confidence 45554443 4567777744 21 0 0122233333 556 66666666
No 339
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=43.60 E-value=36 Score=23.72 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=40.9
Q ss_pred EecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413 152 NLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK 229 (346)
Q Consensus 152 ~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~ 229 (346)
.+..++|..|+.+ +.++++ -.|... +++. .......+...++..+.|.+. ++ |+.+
T Consensus 5 ~y~~~~C~~C~~~----------~~~l~~~~i~~~~~--~i~~----~~~~~~~~~~~~~~~~vP~l~-~~---g~~i-- 62 (82)
T 1fov_A 5 IYTKETCPYCHRA----------KALLSSKGVSFQEL--PIDG----NAAKREEMIKRSGRTTVPQIF-ID---AQHI-- 62 (82)
T ss_dssp EEECSSCHHHHHH----------HHHHHHHTCCCEEE--ECTT----CSHHHHHHHHHHSSCCSCEEE-ET---TEEE--
T ss_pred EEECCCChhHHHH----------HHHHHHCCCCcEEE--ECCC----CHHHHHHHHHHhCCCCcCEEE-EC---CEEE--
Confidence 3466789999765 334431 344443 4441 023345577788999999984 33 5543
Q ss_pred EeCCCChHHHHHHHHHHHHcCCcc
Q 036413 230 WCGMVDPVSLLEDLLSFMESGPRD 253 (346)
Q Consensus 230 ~~G~~~~~~~i~~L~~fl~~~~~~ 253 (346)
.|. ..|.++++.+.+.
T Consensus 63 -~g~-------~~i~~~~~~g~l~ 78 (82)
T 1fov_A 63 -GGY-------DDLYALDARGGLD 78 (82)
T ss_dssp -ESH-------HHHHHHHHTTCSH
T ss_pred -eCH-------HHHHHHHHCCCHH
Confidence 342 3455666666543
No 340
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.52 E-value=34 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEecCCCCCCCCccCCcccchhhcCCCcee-EEEE
Q 036413 309 QFRLTRPDPGAPKPLDYNSKMTFQESGLNNSV-ILVT 344 (346)
Q Consensus 309 ~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~-vl~~ 344 (346)
.|.|. |.| +.|. +.+.||++.|+++.+ |.++
T Consensus 62 q~~Li--~~G--k~L~-dD~~tL~dygI~~g~~l~lv 93 (105)
T 1v2y_A 62 TYHLT--SAG--EKLT-EDRKKLRDYGIRNRDEVSFI 93 (105)
T ss_dssp TEEEE--SSS--CEEC-CSSSBHHHHTCCSSEEEEEE
T ss_pred eEEEE--eCC--cCcc-CCcCCHHHcCCCCCCEEEEE
Confidence 47777 444 5553 456899999999544 4443
No 341
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=42.89 E-value=40 Score=27.53 Aligned_cols=70 Identities=4% Similarity=0.027 Sum_probs=39.2
Q ss_pred CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHhhcCCCC
Q 036413 134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCGYYKLDS 212 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~~y~~~~ 212 (346)
+..+.+..+....+ |+| +..++|..|+.+.+ +.+-+. -.|..+-++.+. +.++. ..+...|++.+
T Consensus 37 ~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~~k~-------~L~~~~-i~~~~vdId~~~----~~~~~~~~L~~~~g~~t 102 (146)
T 2ht9_A 37 APVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMN-VNYKVVELDLLE----YGNQFQDALYKMTGERT 102 (146)
T ss_dssp CCHHHHHHHHHHCS-EEE-EECTTCHHHHHHHH-------HHHHHT-CCCEEEEGGGCT----THHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCC-EEE-EECCCChhHHHHHH-------HHHHcC-CCeEEEECccCc----CCHHHHHHHHHHhCCCC
Confidence 34455555555555 444 56789999987631 222233 455544333220 01222 23778899999
Q ss_pred CceEE
Q 036413 213 LPVVL 217 (346)
Q Consensus 213 ~P~i~ 217 (346)
+|.|.
T Consensus 103 vP~if 107 (146)
T 2ht9_A 103 VPRIF 107 (146)
T ss_dssp SCEEE
T ss_pred cCeEE
Confidence 99984
No 342
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=42.86 E-value=57 Score=24.73 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=34.4
Q ss_pred hcCcEEEEEecC----CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHhhcCCCCCceEE
Q 036413 144 DENKWLLVNLQS----PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCGYYKLDSLPVVL 217 (346)
Q Consensus 144 ~~~K~LlV~l~~----~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~~y~~~~~P~i~ 217 (346)
+.+| |+||..+ ++|..|+.. +.+|++.+.-|-.++++. +++. ..+...++..++|.|.
T Consensus 13 ~~~~-vvvy~~g~~~~~~Cp~C~~a----------k~~L~~~~i~~~~vdi~~-----~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 13 NKAS-VMLFMKGNKQEAKCGFSKQI----------LEILNSTGVEYETFDILE-----DEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp TTSS-EEEEESSTTTCCCSSTHHHH----------HHHHHHTCSCEEEEESSS-----CHHHHHHHHHHHSCCSSCEEE
T ss_pred ccCC-EEEEEecCCCCCCCchHHHH----------HHHHHHcCCCeEEEECCC-----CHHHHHHHHHHhCCCCCCEEE
Confidence 3444 6777765 788888655 555552333344455552 3443 3456677778999863
No 343
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.76 E-value=33 Score=24.35 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCeeEEEEEcCCCccc-----c-----------------CCcceEEecCCCCCCCCccCCcccchhhcCCCce-eEEE
Q 036413 289 NLVCRIGVRLPDGQEA-----N-----------------QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNS-VILV 343 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri-----~-----------------~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~-~vl~ 343 (346)
+...+|.||.++|+.+ . .....+|.- .| +.| +.+.||++.|+++. +|.+
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~--~g--k~L--~d~~tL~~~~i~~g~~i~l 76 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF--KG--KAL--ADGKRLSDYSIGPNSKLNL 76 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE--TT--EEC--CTTSBGGGGTCCSSBCCEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE--CC--eEC--CCCCcHHHcCCCCCCEEEE
Confidence 4567889998999764 0 012223322 22 445 23689999999854 4444
No 344
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.57 E-value=47 Score=24.00 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCeeEEEEEcCCCccc-----c-----------------CCcceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 289 NLVCRIGVRLPDGQEA-----N-----------------QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri-----~-----------------~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
+...+|.||..+|+.+ . .....+|.- .| +.| +.+.||++.|+++ ++|.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~--~G--k~L--~d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF--QG--QVL--QDWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE--TT--EEC--CSSSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE--CC--EEc--cCCCCHHHCCCCCCCEEEEE
Confidence 4577899999999765 0 012233332 22 445 3468999999985 555443
No 345
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=39.73 E-value=60 Score=26.47 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.2
Q ss_pred CcccchhhcCCC-ceeEEEEe
Q 036413 326 NSKMTFQESGLN-NSVILVTL 345 (346)
Q Consensus 326 ~~d~TieeagL~-n~~vl~~~ 345 (346)
+.+.||-|.|+. +.+|++++
T Consensus 101 D~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 101 DHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCcHHHcCCCCCCEEEEEE
Confidence 446799999999 67777653
No 346
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=39.49 E-value=62 Score=27.40 Aligned_cols=46 Identities=7% Similarity=0.000 Sum_probs=36.4
Q ss_pred HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413 202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249 (346)
Q Consensus 202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~ 249 (346)
.+.+..+++...|++.|-+ .|+.+....|..+++.|++.|...++.
T Consensus 159 ~~~a~~~gv~g~Pt~~v~~--~~~~~~~~~g~~~~e~~~~~i~~~~~~ 204 (208)
T 3kzq_A 159 LSLAKSLGVNSYPSLVLQI--NDAYFPIEVDYLSTEPTLKLIRERIIE 204 (208)
T ss_dssp HHHHHHTTCCSSSEEEEEE--TTEEEEECCCSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHhc
Confidence 3445678899999998865 467776778988999999999888754
No 347
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=38.67 E-value=30 Score=27.79 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHHhhcCC
Q 036413 11 KRVISSFLEITNGQTEETALKILNATNW-NLDKAILRFNNNSN 52 (346)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f~~~~~ 52 (346)
.+.|.+.+++ |=+...|+.-|..+++ |++.|++--+++..
T Consensus 4 ~~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 4 ESSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp THHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 4578899998 8889999999999976 99999998888653
No 348
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=38.29 E-value=38 Score=31.47 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=33.7
Q ss_pred hhHHHHHHhhhcc------cCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 8 KQRKRVISSFLEI------TNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 8 ~~~~~~i~~F~~i------Tt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
++|.+.|.+|.+. ....|...-.+||.+++||++.|...+-+
T Consensus 37 ~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 37 KEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677788888764 23468889999999999999999998744
No 349
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=37.60 E-value=38 Score=24.45 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=30.4
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHHhhcCCCCCceE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVCGYYKLDSLPVV 216 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~~~y~~~~~P~i 216 (346)
++.++.++|..|+.+ +.++++.+.=|-.++++. +++ ...+...++..+.|.+
T Consensus 8 v~ly~~~~C~~C~~~----------~~~L~~~~i~~~~~di~~-----~~~~~~~l~~~~~~~~vP~l 60 (92)
T 2khp_A 8 VIIYTRPGCPYCARA----------KALLARKGAEFNEIDASA-----TPELRAEMQERSGRNTFPQI 60 (92)
T ss_dssp EEEEECTTCHHHHHH----------HHHHHHTTCCCEEEESTT-----SHHHHHHHHHHHTSSCCCEE
T ss_pred EEEEECCCChhHHHH----------HHHHHHcCCCcEEEECCC-----CHHHHHHHHHHhCCCCcCEE
Confidence 344567889999754 445541222223344541 333 4457778888999965
No 350
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=37.11 E-value=26 Score=27.00 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=33.4
Q ss_pred EEEEEcCCCccc----------------------cCCcceEEecCCCCCCCCccCCcccchhhcCCCceeE
Q 036413 293 RIGVRLPDGQEA----------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVI 341 (346)
Q Consensus 293 rIqiRlpdG~ri----------------------~~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~v 341 (346)
+|.|..|+|+|. .++..|.|.+. .+.| |++..|--+||.|.+-
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~----~k~l--DLSlpfRlsgLpnnAk 75 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ----RTVL--DLSLQWRFANLPNNAK 75 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET----TEEE--SSSCBHHHHCCCSSCE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC----CEec--cccceeEecCCCCCCE
Confidence 799999999885 24578888874 3455 8889999999996543
No 351
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=36.50 E-value=46 Score=24.93 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=14.3
Q ss_pred CCccCCcccchhhcCCCce-eEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~ 343 (346)
+.|. .+.||++.|+++. +|.+
T Consensus 48 k~L~--D~~tL~~~gi~~g~~i~l 69 (98)
T 1yx5_B 48 KQLE--DGRTLSDYNIQKESTLHL 69 (98)
T ss_dssp EECC--TTSBTGGGTCCTTCEEEE
T ss_pred EECC--CCCCHHHcCCCCCCEEEE
Confidence 4553 3689999999854 4444
No 352
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=35.85 E-value=59 Score=23.10 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=29.0
Q ss_pred eeEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 291 VCRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 291 ~trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
..+|.||.++|+.+ . .....+|.. .| +.|. .+.||.+.|+++ ++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~--~g--~~L~--d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AG--KQLE--DGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE--TT--EECC--TTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE--CC--EECC--CCCCHHHcCCCCCCEEEEE
Confidence 45788888888765 0 112334442 22 4453 358999999994 455443
No 353
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=34.59 E-value=49 Score=23.32 Aligned_cols=54 Identities=7% Similarity=-0.103 Sum_probs=31.0
Q ss_pred EEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCCh-HHHHHHhhcCC-----CCCceEEE
Q 036413 150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDS-ECRKVCGYYKL-----DSLPVVLV 218 (346)
Q Consensus 150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~-eg~~~~~~y~~-----~~~P~i~i 218 (346)
++-++.++|..|+.. +.+|++ -.|-+..++... .+ ....+...++. .+.|.|.|
T Consensus 6 v~ly~~~~Cp~C~~~----------~~~L~~~~i~~~~~~vd~~~-----~~~~~~el~~~~g~~~~~~~~vP~i~i 67 (89)
T 3msz_A 6 VKIYTRNGCPYCVWA----------KQWFEENNIAFDETIIDDYA-----QRSKFYDEMNQSGKVIFPISTVPQIFI 67 (89)
T ss_dssp EEEEECTTCHHHHHH----------HHHHHHTTCCCEEEECCSHH-----HHHHHHHHHHTTTCCSSCCCSSCEEEE
T ss_pred EEEEEcCCChhHHHH----------HHHHHHcCCCceEEEeecCC-----ChhHHHHHHHHhCCCCCCCCccCEEEE
Confidence 444566789999765 444441 335444333330 11 22457777777 89999954
No 354
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=33.78 E-value=77 Score=22.36 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.9
Q ss_pred CCccCCcccchhhcCCCceeEE
Q 036413 321 KPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~~vl 342 (346)
+.|. .+.|+++.|+.+.+.+
T Consensus 51 ~~L~--d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 51 QRIA--DNHTPKELGMEEEDVI 70 (79)
T ss_dssp EECC--TTCCHHHHTCCTTEEE
T ss_pred EEeC--CCCCHHHcCCCCCCEE
Confidence 4553 4579999999855443
No 355
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=33.75 E-value=63 Score=23.24 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.0
Q ss_pred CCeeEEEEEcCCCccc
Q 036413 289 NLVCRIGVRLPDGQEA 304 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri 304 (346)
....+|.||..+|+.+
T Consensus 10 ~~~m~i~vk~~~g~~~ 25 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEI 25 (88)
T ss_dssp CCCEEEEEECTTSCEE
T ss_pred CCcEEEEEEcCCCCEE
Confidence 4567899999999875
No 356
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.38 E-value=37 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=31.8
Q ss_pred hhHHHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHH
Q 036413 8 KQRKRVISSFLEITNGQTEETALKILNATNW-NLDKAILRF 47 (346)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f 47 (346)
+...+.+.+.+++ |.+.+.|..-|+.+|. .|+.|+.--
T Consensus 7 ~vn~qmlq~L~eM--GFd~erae~Alk~Tg~~Gle~AmewL 45 (54)
T 2cos_A 7 GVNRQMLQELVNA--GCDQEMAGRALKQTGSRSIEAALEYI 45 (54)
T ss_dssp SCCHHHHHHHHHH--HCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHc--CCCHHHHHHHHHHhCcccHHHHHHHH
Confidence 4556678999999 9999999999999986 699998743
No 357
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=32.18 E-value=55 Score=29.58 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=32.8
Q ss_pred hhHHHHHHhhhcc------cCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 8 KQRKRVISSFLEI------TNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 8 ~~~~~~i~~F~~i------Tt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
+++.+.|.+|.+. .-..|.....+||.+++||++.|...+-.
T Consensus 28 ~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 28 SAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp TTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4677788888653 22467899999999999999999987643
No 358
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=31.92 E-value=66 Score=30.53 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=32.5
Q ss_pred hhHHHHHHhhhccc-------CCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 8 KQRKRVISSFLEIT-------NGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 8 ~~~~~~i~~F~~iT-------t~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
+.+.+.|.+|.+.- -..|.....+||.+++||++.|...+-.
T Consensus 10 ~~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 10 PRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp HHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 46777788775420 2468889999999999999999998644
No 359
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=31.57 E-value=62 Score=24.28 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCeeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCce-eEEEE
Q 036413 289 NLVCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNS-VILVT 344 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~-~vl~~ 344 (346)
+...+|.||..+|+.+ .. ....+|.- -| +.| +.+.||.+.|+++. +|.+.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~G--k~L--~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF--AG--KQL--EDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE--TT--EEC--CTTCBSGGGTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE--CC--EEC--CCCCcHHHCCCCCCCEEEEE
Confidence 4577899999999875 00 12233332 22 445 34679999999954 44443
No 360
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=31.54 E-value=26 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 22 NGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 22 t~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
..-++++|||+| +|||.|-+.|+.
T Consensus 70 deL~e~q~Rqll----fDle~aY~~F~~ 93 (96)
T 2j9u_A 70 DTLTETQIRELL----FDLELAYKSFYA 93 (96)
T ss_dssp CBCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 566899999999 899999999985
No 361
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=31.50 E-value=26 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.9
Q ss_pred cCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413 21 TNGQTEETALKILNATNWNLDKAILRFNN 49 (346)
Q Consensus 21 Tt~~~~~~A~~~L~~~~wdle~Av~~f~~ 49 (346)
+.--++++|||+| +|||.|.+.|+.
T Consensus 74 sdeL~e~q~Rqll----fDle~aY~~F~~ 98 (102)
T 2j9w_A 74 SDELDDSQVRQML----FDLESAYNAFNR 98 (102)
T ss_dssp TCBCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 3566899999999 899999999985
No 362
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=31.44 E-value=45 Score=26.50 Aligned_cols=69 Identities=12% Similarity=0.044 Sum_probs=37.8
Q ss_pred HHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc-----EEEEEeecCCCCCCCC-hHH-HHHHhh
Q 036413 135 FEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN-----FIFWQVYDDDDDDDDD-SEC-RKVCGY 207 (346)
Q Consensus 135 f~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n-----FVfw~~~~~~~~~~~~-~eg-~~~~~~ 207 (346)
..+.++...+..+ |.|| ..++|..|+.. ++.+|++.+ |...-++.+. . .+. ..+...
T Consensus 26 ~~~~v~~~i~~~~-Vvvy-~~~~Cp~C~~a---------~k~~L~~~~~~~i~~~~vdvd~~~-----~~~~~~~~L~~~ 89 (129)
T 3ctg_A 26 TVAHVKDLIGQKE-VFVA-AKTYCPYCKAT---------LSTLFQELNVPKSKALVLELDEMS-----NGSEIQDALEEI 89 (129)
T ss_dssp HHHHHHHHHHHSS-EEEE-ECTTCHHHHHH---------HHHHHTTSCCCGGGEEEEEGGGST-----THHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-EEEE-ECCCCCchHHH---------HHHHHHhcCccCCCcEEEEccccC-----CHHHHHHHHHHH
Confidence 4444444445555 4444 45789888644 367776222 3333333220 1 122 346777
Q ss_pred cCCCCCceEEEEe
Q 036413 208 YKLDSLPVVLVID 220 (346)
Q Consensus 208 y~~~~~P~i~iid 220 (346)
++..+.|.| +|+
T Consensus 90 ~g~~tVP~v-fi~ 101 (129)
T 3ctg_A 90 SGQKTVPNV-YIN 101 (129)
T ss_dssp HSCCSSCEE-EET
T ss_pred hCCCCCCEE-EEC
Confidence 888899997 444
No 363
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=30.57 E-value=1.1e+02 Score=23.30 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=56.6
Q ss_pred cccccCHHHHHHHhhhcC-cEEEEEecCCCCccc---------cccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC
Q 036413 129 LMFNGSFEKAKDVGSDEN-KWLLVNLQSPKEFTS---------HTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD 198 (346)
Q Consensus 129 l~~~gsf~~A~~~Ak~~~-K~LlV~l~~~~~f~c---------~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~ 198 (346)
+-...+..+|+..-++.+ .++.| +.+...+-- ..+....+.+..|.+++. .+++....+.. -
T Consensus 21 v~~~~~~~~a~~~~~~~~~~~~~V-vd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~------l 92 (138)
T 2p9m_A 21 AKRHEGVVEAFEKMLKYKISSLPV-IDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT-KDVITIHEDAS------I 92 (138)
T ss_dssp EETTSBHHHHHHHHHHHTCCEEEE-ECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC-SSCCCEETTSB------H
T ss_pred ECCCCcHHHHHHHHHHCCCcEEEE-ECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC-CCcEEECCCCC------H
Confidence 334568899888765544 34433 222222211 111122345667888888 77766554333 3
Q ss_pred hHHHHHHhhcC--CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413 199 SECRKVCGYYK--LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS 245 (346)
Q Consensus 199 ~eg~~~~~~y~--~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~ 245 (346)
.++.+.....+ -..+.++.|+|. .|+ +.|.++..+++..+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~----~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 93 LEAIKKMDISGKKEEIINQLPVVDK-NNK----LVGIISDGDIIRTISK 136 (138)
T ss_dssp HHHHHHHTCC-----CCCEEEEECT-TSB----EEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccEEEEECC-CCe----EEEEEEHHHHHHHHHh
Confidence 44444443332 001778889985 465 3466777888776643
No 364
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=30.38 E-value=74 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=14.8
Q ss_pred CCccCCcccchhhcCCCc-eeEEEE
Q 036413 321 KPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
+.|. .+.||.+.|+++ ++|.+.
T Consensus 49 ~~L~--d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 49 KQLE--DGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EECC--TTSBTGGGTCCTTCEEEEE
T ss_pred EECC--CCCcHHHcCCCCCCEEEEE
Confidence 4453 457999999984 455443
No 365
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=29.80 E-value=87 Score=22.86 Aligned_cols=48 Identities=31% Similarity=0.445 Sum_probs=28.6
Q ss_pred eeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 291 VCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 291 ~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
..+|.||..+|+.+ .. ...-+|. |.| +.| +.+.||++.|+++ ++|.+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~G--k~L--~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT--FEG--KPL--EDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE--SSS--SCC--CTTSBHHHHHCSTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE--ECC--EEC--CCCCcHHHcCCCCCCEEEEE
Confidence 56788888888765 00 1223333 222 445 3468999999985 445443
No 366
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=28.46 E-value=37 Score=23.44 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=27.3
Q ss_pred HHHHHHhhhcccCCCCHHHH--HHHHHHcCCCHHHHHHHH
Q 036413 10 RKRVISSFLEITNGQTEETA--LKILNATNWNLDKAILRF 47 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A--~~~L~~~~wdle~Av~~f 47 (346)
-.+.|.|.+++ +=. .+-+ .++|+..++|+..|+..-
T Consensus 10 l~~al~qMl~M-GF~-negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSM-GFS-DEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTT-TCC-CTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHc-CCC-ccccHHHHHHHHccCCHHHHHHHh
Confidence 34678888888 444 3433 699999999999999864
No 367
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=28.46 E-value=75 Score=26.56 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413 201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME 248 (346)
Q Consensus 201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~ 248 (346)
..+.+..+++...|++.| .|+.+....|..+.+.|.+.|...++
T Consensus 141 ~~~~a~~~gv~GtPtfvv----ng~~~v~~~Ga~~~e~~~~~i~~ll~ 184 (185)
T 3feu_A 141 AKMLSEKSGISSVPTFVV----NGKYNVLIGGHDDPKQIADTIRYLLE 184 (185)
T ss_dssp HHHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCccCEEEE----CCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 345567889999999986 47765555888889888888776553
No 368
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=27.97 E-value=90 Score=24.00 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCeeEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCC-ceeEEEE
Q 036413 289 NLVCRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLN-NSVILVT 344 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~-n~~vl~~ 344 (346)
....+|.||..+|+.+ . .....+|.- -| +.| +.+.||++.|++ +++|.+.
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~G--k~L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AG--KQL--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE--TT--EEC--CSSCBTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE--CC--EEC--CCCCcHHHcCCCCCCEEEEE
Confidence 3578899999999765 0 112333332 12 445 236899999998 4555543
No 369
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=27.88 E-value=62 Score=24.82 Aligned_cols=90 Identities=9% Similarity=0.086 Sum_probs=45.6
Q ss_pred HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHH-HHHHhhcCCCC
Q 036413 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSEC-RKVCGYYKLDS 212 (346)
Q Consensus 136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg-~~~~~~y~~~~ 212 (346)
.+.++...+.++.++ +..++|..|+.. +.++++ -.|-. ++++. ..+..+- ..+...++..+
T Consensus 7 ~~~~~~~i~~~~v~v--y~~~~Cp~C~~a----------k~~L~~~~i~~~~--~dvd~--~~~~~~~~~~l~~~~g~~t 70 (114)
T 3h8q_A 7 RRHLVGLIERSRVVI--FSKSYCPHSTRV----------KELFSSLGVECNV--LELDQ--VDDGARVQEVLSEITNQKT 70 (114)
T ss_dssp HHHHHHHHHHCSEEE--EECTTCHHHHHH----------HHHHHHTTCCCEE--EETTT--STTHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHhccCCEEE--EEcCCCCcHHHH----------HHHHHHcCCCcEE--EEecC--CCChHHHHHHHHHHhCCCc
Confidence 344555556666433 455789999654 555551 23433 34441 0001222 22456677889
Q ss_pred CceEEEEeCCCCceEEEEeCCCChHHHHH--HHHHHHH
Q 036413 213 LPVVLVIDPITGEKMRKWCGMVDPVSLLE--DLLSFME 248 (346)
Q Consensus 213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~--~L~~fl~ 248 (346)
+|.|.| .|+.+ -|+-+..++.+ .|.+.|.
T Consensus 71 vP~vfi----~g~~i---gG~d~l~~l~~~G~L~~~l~ 101 (114)
T 3h8q_A 71 VPNIFV----NKVHV---GGCDQTFQAYQSGLLQKLLQ 101 (114)
T ss_dssp SCEEEE----TTEEE---ESHHHHHHHHHHTHHHHHHH
T ss_pred cCEEEE----CCEEE---eCHHHHHHHHHCCCHHHHhc
Confidence 999966 36543 35323333332 3555555
No 370
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=27.23 E-value=77 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=23.5
Q ss_pred cCcEEEEEecC-CCCcccc-ccccccCCCHHHHHH-hccCcE-EEEEeecC
Q 036413 145 ENKWLLVNLQS-PKEFTSH-TLNRDTWADEAVSQT-IRASNF-IFWQVYDD 191 (346)
Q Consensus 145 ~~K~LlV~l~~-~~~f~c~-~lnRdvw~~~~V~~~-i~~~nF-Vfw~~~~~ 191 (346)
.+||++++++- .+++.|. .=-+.. ++...+| -+ .+. .+++++.+
T Consensus 42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f--~~~~~~f~~~-~g~~~V~gvS~D 89 (182)
T 1xiy_A 42 NNKKILLISLPGAFTPTCSTKMIPGY--EEEYDYFIKE-NNFDDIYCITNN 89 (182)
T ss_dssp TTCEEEEEECSCTTCHHHHHTHHHHH--HHTHHHHHTT-SCCSEEEEEESS
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHh-CCCcEEEEEeCC
Confidence 46788887754 4677776 211111 2233444 33 555 46776666
No 371
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=27.12 E-value=59 Score=23.17 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCccCCcccchhhcCCCc-eeEEEE
Q 036413 321 KPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
+.| +.+.||.+.|+++ ++|.+.
T Consensus 51 ~~L--~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 51 KQL--EDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp EEC--CTTCBTTTTTCCTTCEEEEE
T ss_pred eEC--CCCCCHHHCCCCCCCEEEEE
Confidence 445 3357999999995 455443
No 372
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=26.82 E-value=92 Score=23.91 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=31.3
Q ss_pred CCeeEEEEEcCCCccc-----c-----------------CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEE
Q 036413 289 NLVCRIGVRLPDGQEA-----N-----------------QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 289 ~~~trIqiRlpdG~ri-----~-----------------~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl 342 (346)
+....|-|+.+.|+.+ + .+..-+|... .+.| +.+.||++.|+.+.+-+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~----Gk~L--kD~~TL~dY~I~dgstL 88 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG----GSVL--KDHISLEDYEVHDQTNL 88 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET----TEEC--CTTSBTGGGTCCTTCEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC----CEEc--cCcCCHHHcCCCCCCEE
Confidence 5678899999999987 0 1123344432 2445 33679999999966544
No 373
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.42 E-value=1.3e+02 Score=22.18 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=28.7
Q ss_pred CeeEEEEEcCCCccc-----c-----------C---CcceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413 290 LVCRIGVRLPDGQEA-----N-----------Q---TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV 343 (346)
Q Consensus 290 ~~trIqiRlpdG~ri-----~-----------~---~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~ 343 (346)
...+|.||..+|+.+ . . ....+|. |-| +.| .+.+.||++.|+++.+.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~~~~qrLi--~~G--k~L-~D~~~tL~~y~i~~g~~i~ 73 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMKLI--YQG--RLL-QDPARTLSSLNITNNCVIH 73 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSSTTTTCEEE--ETT--EEC-CCSSCBTTTTTCCTTEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhCcCcEEEE--ECC--EEc-cCCcCCHHHcCCCCCCEEE
Confidence 467899999999765 0 0 1122232 222 334 3334899999998554443
No 374
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=26.17 E-value=1.3e+02 Score=29.79 Aligned_cols=86 Identities=9% Similarity=0.166 Sum_probs=49.4
Q ss_pred hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413 142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP 221 (346)
Q Consensus 142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp 221 (346)
+....++++|.+.+.... + ..+.+.++.. ...|......+ + -..+++.|+++.||+++++++
T Consensus 153 ~~~~~~~vallF~~~~s~----~-----~~~~~ldl~~-~~~v~v~~v~~------~--~~~l~~kfgV~~~Pslvl~~~ 214 (519)
T 3t58_A 153 TRNKADYLALVFEREDSY----L-----GREVTLDLSQ-YHAVAVRRVLN------T--ESDLVNKFGVTDFPSCYLLLR 214 (519)
T ss_dssp GSCCCSEEEEEEECTTCC----H-----HHHHHHHTTT-CTTEEEEEEET------T--CHHHHHHHTCCCSSEEEEEET
T ss_pred ccCCCCeEEEEecCCchH----H-----HHHHHHHhhc-cCCeeEEEecC------c--hHHHHHHcCCCCCCeEEEEeC
Confidence 346778888888765311 1 2334455555 33354443333 2 256889999999999999996
Q ss_pred CCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 222 ITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 222 ~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
.|+.. ......+...++. .++.+.
T Consensus 215 -nGk~~-~~~v~~~~r~~~~---~~l~~l 238 (519)
T 3t58_A 215 -NGSVS-RVPVLVESRSFYT---SYLRGL 238 (519)
T ss_dssp -TSCEE-ECCCSSCSHHHHH---HHHTTS
T ss_pred -CCcee-ecccccccHHHHH---HHHHHc
Confidence 46533 3333333334433 555543
No 375
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=26.10 E-value=75 Score=24.95 Aligned_cols=69 Identities=25% Similarity=0.272 Sum_probs=38.6
Q ss_pred cCHHHHHHHhhhcCcEEEEEecC----CCCccccccccccCCCHHHHHHhccCcEE--EEEeecCCCCCCCChHHHHH-H
Q 036413 133 GSFEKAKDVGSDENKWLLVNLQS----PKEFTSHTLNRDTWADEAVSQTIRASNFI--FWQVYDDDDDDDDDSECRKV-C 205 (346)
Q Consensus 133 gsf~~A~~~Ak~~~K~LlV~l~~----~~~f~c~~lnRdvw~~~~V~~~i~~~nFV--fw~~~~~~~~~~~~~eg~~~-~ 205 (346)
|...+.++..-++++ ++||-.+ ++|..|.. ++++|+ +.=| |-.++++. +++.... .
T Consensus 7 ~~~~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~----------ak~lL~-~~gv~~~~~vdV~~-----d~~~~~~l~ 69 (118)
T 2wem_A 7 GGSAEQLDALVKKDK-VVVFLKGTPEQPQCGFSNA----------VVQILR-LHGVRDYAAYNVLD-----DPELRQGIK 69 (118)
T ss_dssp --CHHHHHHHHHHSS-EEEEESBCSSSBSSHHHHH----------HHHHHH-HTTCCCCEEEESSS-----CHHHHHHHH
T ss_pred ccHHHHHHHHhccCC-EEEEEecCCCCCccHHHHH----------HHHHHH-HcCCCCCEEEEcCC-----CHHHHHHHH
Confidence 345566666666666 5666665 46766644 466776 3222 33344542 4555444 3
Q ss_pred hhcCCCCCceEEE
Q 036413 206 GYYKLDSLPVVLV 218 (346)
Q Consensus 206 ~~y~~~~~P~i~i 218 (346)
......++|.|.|
T Consensus 70 ~~tg~~tvP~vfI 82 (118)
T 2wem_A 70 DYSNWPTIPQVYL 82 (118)
T ss_dssp HHHTCCSSCEEEE
T ss_pred HHhCCCCcCeEEE
Confidence 4446778999854
No 376
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=25.50 E-value=82 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=14.7
Q ss_pred CCccCCcccchhhcCCCce-eEEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILVT 344 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~~ 344 (346)
+.| +.+.||.+.|+++. +|.+.
T Consensus 48 k~L--~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 48 KQM--NDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEC--CTTSBTTTTTCCTTCEEEEE
T ss_pred eEC--CCCCcHHHcCCCCCCEEEEE
Confidence 445 23789999999954 44443
No 377
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.62 E-value=1.7e+02 Score=22.10 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=29.3
Q ss_pred CCCeeEEEEEcCCCccc--------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEE
Q 036413 288 RNLVCRIGVRLPDGQEA--------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVIL 342 (346)
Q Consensus 288 ~~~~trIqiRlpdG~ri--------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl 342 (346)
.....+|.||..+|+.. . .....+|.- -| +.| +.+.||++.|+++.+.+
T Consensus 14 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~G--k~L--~D~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF--AG--KIL--KDPDSLAQCGVRDGLTV 83 (106)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE--TT--EEC--CTTSCHHHHTCCTTEEE
T ss_pred CCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE--CC--EEC--CCcCcHHHcCCCCCCEE
Confidence 34678899999998631 0 012233322 22 445 33689999999855544
No 378
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=23.56 E-value=96 Score=21.47 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=14.6
Q ss_pred CCccCCcccchhhcCCCce-eEEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILVT 344 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~~ 344 (346)
+.|. .+.||++.|++++ +|.++
T Consensus 51 k~L~--d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 51 KILK--DDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EECC--TTSBTGGGTCCTTCEEEEE
T ss_pred eEcC--CCCCHHHcCCCCCCEEEEE
Confidence 4453 3589999999854 44443
No 379
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=23.01 E-value=1.1e+02 Score=26.58 Aligned_cols=48 Identities=6% Similarity=0.090 Sum_probs=34.3
Q ss_pred HHHHhh-cCCCCCceEEEEeCCCCceEE-----EEeCCCChHHHHHHHHHHHHcC
Q 036413 202 RKVCGY-YKLDSLPVVLVIDPITGEKMR-----KWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 202 ~~~~~~-y~~~~~P~i~iidp~tge~l~-----~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
.+.+.. +++...|++.|+++ .|+.+. ...|..+++.|.+.|...+...
T Consensus 160 ~~~a~~~~GV~GtPtfvv~~~-nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l~~~ 213 (226)
T 3f4s_A 160 KSLAINKLGITAVPIFFIKLN-DDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKA 213 (226)
T ss_dssp HHHHHHHHCCCSSCEEEEEEC-CTTCCCCGGGGEEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCEEEEEcC-CCEEeeCCCCcccccccCHHHHHHHHHHHHhcC
Confidence 345567 99999999999874 476541 2345556999988888877543
No 380
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=22.84 E-value=1.2e+02 Score=23.59 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHhhhcCcEEEEEecC----CCCccccccccccCCCHHHHHHhccCc------EEEEEeecCCCCCCCChHHHH-HH
Q 036413 137 KAKDVGSDENKWLLVNLQS----PKEFTSHTLNRDTWADEAVSQTIRASN------FIFWQVYDDDDDDDDDSECRK-VC 205 (346)
Q Consensus 137 ~A~~~Ak~~~K~LlV~l~~----~~~f~c~~lnRdvw~~~~V~~~i~~~n------FVfw~~~~~~~~~~~~~eg~~-~~ 205 (346)
+.++..-+.++ ++||-.+ ++|..|... +++|+ +. |.. +++.. +++... +.
T Consensus 7 ~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~a----------k~lL~-~~gv~~~~~~~--~dv~~-----~~~~~~~l~ 67 (121)
T 3gx8_A 7 KAIEDAIESAP-VVLFMKGTPEFPKCGFSRAT----------IGLLG-NQGVDPAKFAA--YNVLE-----DPELREGIK 67 (121)
T ss_dssp HHHHHHHHSCS-EEEEESBCSSSBCTTHHHHH----------HHHHH-HHTBCGGGEEE--EECTT-----CHHHHHHHH
T ss_pred HHHHHHhccCC-EEEEEeccCCCCCCccHHHH----------HHHHH-HcCCCcceEEE--EEecC-----CHHHHHHHH
Confidence 34445555555 6667665 467777544 56665 32 433 34442 455544 33
Q ss_pred hhcCCCCCceEEE
Q 036413 206 GYYKLDSLPVVLV 218 (346)
Q Consensus 206 ~~y~~~~~P~i~i 218 (346)
...+..++|.|.|
T Consensus 68 ~~sg~~tvP~vfI 80 (121)
T 3gx8_A 68 EFSEWPTIPQLYV 80 (121)
T ss_dssp HHHTCCSSCEEEE
T ss_pred HHhCCCCCCeEEE
Confidence 4556778999854
No 381
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=22.77 E-value=1.4e+02 Score=22.85 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=39.9
Q ss_pred CHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 171 DEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 171 ~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
+..|.+++. .+++....+.. -.++.+....+ .+.++.|+|. .|+ +.|.++..+++..+.+..
T Consensus 84 ~~~v~~~m~-~~~~~v~~~~~------l~~a~~~~~~~---~~~~l~Vvd~-~g~----~~Giit~~dil~~~~~~~ 145 (152)
T 4gqw_A 84 GKLVGDLMT-PAPLVVEEKTN------LEDAAKILLET---KYRRLPVVDS-DGK----LVGIITRGNVVRAALQIK 145 (152)
T ss_dssp CCBHHHHSE-ESCCCEESSSB------HHHHHHHHHHS---SCCEEEEECT-TSB----EEEEEEHHHHHHHHHC--
T ss_pred cccHHHhcC-CCceEECCCCc------HHHHHHHHHHC---CCCEEEEECC-CCc----EEEEEEHHHHHHHHHhcc
Confidence 356888888 77766554444 45555555554 4678888884 465 456677888888776543
No 382
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=22.41 E-value=1.2e+02 Score=23.36 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=30.3
Q ss_pred CeeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 290 LVCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 290 ~~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
...+|.||..+|+.+ .. ....+|.- -| +.|. .+.||.+.|+++ ++|.+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~G--k~L~--D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AG--KQLE--DGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE--TT--EECC--TTSBTTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE--CC--EECC--CCCcHHHCCCCCCCEEEEE
Confidence 467899999999875 01 12334432 22 4453 357999999984 555544
No 383
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=22.37 E-value=81 Score=33.58 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=35.4
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413 10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS 51 (346)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~ 51 (346)
..+.|.+..++ |-+.+.|+.-|..+++|++.||+..|++.
T Consensus 720 ~~e~i~~l~~m--Gf~~~~a~~aL~~t~~~~eraidwlfs~~ 759 (854)
T 3ihp_A 720 PEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHI 759 (854)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHhhcCcHHHHHHhhhcCc
Confidence 45678888777 89999999999999999999999999854
No 384
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=22.14 E-value=1.2e+02 Score=24.51 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=39.2
Q ss_pred CHHHHHHHhhhcCcEEEEEecC----CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH-HHHhhc
Q 036413 134 SFEKAKDVGSDENKWLLVNLQS----PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR-KVCGYY 208 (346)
Q Consensus 134 sf~~A~~~Ak~~~K~LlV~l~~----~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~-~~~~~y 208 (346)
+..+.++...+..+ |.||..+ ++|..|. .++++|++.+.=|--++++. +++.. .+...+
T Consensus 23 ~~~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~----------~ak~~L~~~gv~y~~vdI~~-----d~~~~~~L~~~~ 86 (135)
T 2wci_A 23 TTIEKIQRQIAENP-ILLYMKGSPKLPSCGFSA----------QAVQALAACGERFAYVDILQ-----NPDIRAELPKYA 86 (135)
T ss_dssp HHHHHHHHHHHHCS-EEEEESBCSSSBSSHHHH----------HHHHHHHTTCSCCEEEEGGG-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-EEEEEEecCCCCCCccHH----------HHHHHHHHcCCceEEEECCC-----CHHHHHHHHHHH
Confidence 35555555656666 6667775 6777774 44666662233233344442 34443 355556
Q ss_pred CCCCCceEEE
Q 036413 209 KLDSLPVVLV 218 (346)
Q Consensus 209 ~~~~~P~i~i 218 (346)
+..++|.|.|
T Consensus 87 G~~tvP~VfI 96 (135)
T 2wci_A 87 NWPTFPQLWV 96 (135)
T ss_dssp TCCSSCEEEE
T ss_pred CCCCcCEEEE
Confidence 7789998753
No 385
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=21.06 E-value=1.2e+02 Score=22.05 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=14.3
Q ss_pred CCccCCcccchhhcCCCce-eEEE
Q 036413 321 KPLDYNSKMTFQESGLNNS-VILV 343 (346)
Q Consensus 321 ~~l~~~~d~TieeagL~n~-~vl~ 343 (346)
+.|. .+.||++.|+++. +|.+
T Consensus 57 k~L~--D~~tL~~~gi~~g~~i~l 78 (88)
T 1sif_A 57 KQLE--DGRTLSDYNIQKESTLHL 78 (88)
T ss_dssp EECC--TTSBSGGGTCCTTCEEEE
T ss_pred EECC--CCCcHHHcCCCCCCEEEE
Confidence 4452 3689999999854 4444
No 386
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=21.02 E-value=48 Score=27.66 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=35.2
Q ss_pred ChHHHHHHhhcCC---CCCceEEEEeCCCCceEEEEe-----CCCChHHHHHHHHHHHHcC
Q 036413 198 DSECRKVCGYYKL---DSLPVVLVIDPITGEKMRKWC-----GMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 198 ~~eg~~~~~~y~~---~~~P~i~iidp~tge~l~~~~-----G~~~~~~~i~~L~~fl~~~ 250 (346)
+.|+-.-++.|.. -+=|.++++- .|+.+..++ | -+++.+.+.|...+++|
T Consensus 89 DkEAt~~aR~yf~~~pPSSPS~ALfK--dGelVh~ieRh~IEG-r~a~~Ia~~L~~afd~~ 146 (147)
T 3fhk_A 89 DKEATAKMREYFTGAAPSSPSMALLK--GKEVVHFIPRHEIEG-HDMEEIMKNLTAAFDAH 146 (147)
T ss_dssp SHHHHHHHHTTSTTCCCCSSEEEEEE--TTEEEEEECGGGTTT-SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCCCchheeee--CCEEEEEeehhhcCC-CCHHHHHHHHHHHHHhh
Confidence 4455554554543 2559999998 699888763 4 57899999999887753
No 387
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.85 E-value=2.4e+02 Score=21.46 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=33.2
Q ss_pred CCCeeEEEEEcCCCccc----------------------cCCcceEEecCCCCCCCCccCCcccchhhcCCCc
Q 036413 288 RNLVCRIGVRLPDGQEA----------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN 338 (346)
Q Consensus 288 ~~~~trIqiRlpdG~ri----------------------~~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n 338 (346)
|..|.|++|-++--+.- -++..|.|.+-.- ....| +++.||.+.||+-
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~-~~e~L--dLskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQ-SQEPL--DLTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSS-CCCBC--CTTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCC-CCccc--chhcchhhhhhhh
Confidence 45699999999877652 1456777776321 12344 7788999999984
No 388
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=20.67 E-value=1.1e+02 Score=25.90 Aligned_cols=100 Identities=11% Similarity=0.067 Sum_probs=59.8
Q ss_pred ccCHHHHHHHhhhc---C-cEEEEEecCCCCccccccccccC---CCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHH
Q 036413 132 NGSFEKAKDVGSDE---N-KWLLVNLQSPKEFTSHTLNRDTW---ADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKV 204 (346)
Q Consensus 132 ~gsf~~A~~~Ak~~---~-K~LlV~l~~~~~f~c~~lnRdvw---~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~ 204 (346)
.-+..+|+..-++. + ..+.| +...+.+---.--||++ .+..|.+++. .++++...+.+ -.++.+.
T Consensus 70 ~~tv~eal~~~~~~~~~~~~~~~V-vd~~~~lvGivt~~dll~~~~~~~v~~im~-~~~~~v~~~~~------l~~a~~~ 141 (205)
T 3kxr_A 70 KATVAQAQRFFRRIELDCNDNLFI-VDEADKYLGTVRRYDIFKHEPHEPLISLLS-EDSRALTANTT------LLDAAEA 141 (205)
T ss_dssp TCBHHHHHHHHHHCCCTTCCEEEE-ECTTCBEEEEEEHHHHTTSCTTSBGGGGCC-SSCCCEETTSC------HHHHHHH
T ss_pred CCcHHHHHHHHHhhCccCeeEEEE-EcCCCeEEEEEEHHHHHhCCCcchHHHHhc-CCCeEECCCCC------HHHHHHH
Confidence 55778887776653 2 22222 22222222222234443 2346888888 88877766555 5666666
Q ss_pred HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413 205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM 247 (346)
Q Consensus 205 ~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl 247 (346)
...|+ +.++.|||- .|+. .|.++.+++++.+.+-.
T Consensus 142 m~~~~---~~~lpVVD~-~g~l----vGiIT~~Dil~~i~~e~ 176 (205)
T 3kxr_A 142 IEHSR---EIELPVIDD-AGEL----IGRVTLRAATALVREHY 176 (205)
T ss_dssp HHTSS---CSEEEEECT-TSBE----EEEEEHHHHHHHHHHHH
T ss_pred HHhcC---CCEEEEEcC-CCeE----EEEEEHHHHHHHHHHHH
Confidence 66664 677788884 4653 47678888888886543
No 389
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=20.26 E-value=1.9e+02 Score=21.77 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCcEEEEEecC----CCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHH-HHHhh
Q 036413 135 FEKAKDVGSDENKWLLVNLQS----PKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECR-KVCGY 207 (346)
Q Consensus 135 f~~A~~~Ak~~~K~LlV~l~~----~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~-~~~~~ 207 (346)
..+.++..-+.++ ++||..+ ++|..|+. ++++|++. .|... +++. +++.. .+...
T Consensus 7 ~~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~----------ak~~L~~~gi~~~~~--dI~~-----~~~~~~~l~~~ 68 (109)
T 3ipz_A 7 LKDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNT----------VVQILKNLNVPFEDV--NILE-----NEMLRQGLKEY 68 (109)
T ss_dssp HHHHHHHHHTSSS-EEEEESBCSSSBSSHHHHH----------HHHHHHHTTCCCEEE--EGGG-----CHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-EEEEEecCCCCCCChhHHH----------HHHHHHHcCCCcEEE--ECCC-----CHHHHHHHHHH
Confidence 3445555566665 6667765 46777654 45666512 34333 3431 34443 45555
Q ss_pred cCCCCCceEEE
Q 036413 208 YKLDSLPVVLV 218 (346)
Q Consensus 208 y~~~~~P~i~i 218 (346)
.+..++|.|.|
T Consensus 69 ~g~~tvP~ifi 79 (109)
T 3ipz_A 69 SNWPTFPQLYI 79 (109)
T ss_dssp HTCSSSCEEEE
T ss_pred HCCCCCCeEEE
Confidence 67789997744
No 390
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=20.11 E-value=1.9e+02 Score=23.24 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=30.1
Q ss_pred CeeEEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCccCCcccchhhcCCCc-eeEEEE
Q 036413 290 LVCRIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLDYNSKMTFQESGLNN-SVILVT 344 (346)
Q Consensus 290 ~~trIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n-~~vl~~ 344 (346)
+...|.||..+|+.+ .. ....+|.- -| +.|. .+.||.+.|+++ ++|.+.
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~G--~~L~--d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF--EG--KPLE--DQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE--TT--EECC--TTSBGGGGTCCTTCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE--CC--eecC--CCCCHHHcCCCCCCEEEEE
Confidence 346788888888875 01 13444543 22 4453 367999999995 445443
No 391
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=20.02 E-value=2e+02 Score=22.72 Aligned_cols=66 Identities=9% Similarity=0.171 Sum_probs=42.4
Q ss_pred CHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413 171 DEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG 250 (346)
Q Consensus 171 ~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~ 250 (346)
+..|.+++. .+++....+.. -.++.+. +.-..+.++.|+|. .|+ +.|.++..+++..+.......
T Consensus 97 ~~~v~~~m~-~~~~~v~~~~~------l~~a~~~---m~~~~~~~lpVvd~-~g~----~vGiit~~dil~~~~~~~~~~ 161 (180)
T 3sl7_A 97 GKVVGDLMT-PSPLVVRDSTN------LEDAARL---LLETKFRRLPVVDA-DGK----LIGILTRGNVVRAALQIKRNA 161 (180)
T ss_dssp TCBHHHHSE-ESCCCEETTSB------HHHHHHH---HTTSTTCEEEEECT-TCB----EEEEEEHHHHHHHHHHHHHTC
T ss_pred cccHHHHhC-CCceEeCCCCc------HHHHHHH---HHHcCCCEEEEECC-CCe----EEEEEEHHHHHHHHHHHhhhh
Confidence 456888888 77765444333 3334433 33446788899984 465 357778899999888876654
Q ss_pred C
Q 036413 251 P 251 (346)
Q Consensus 251 ~ 251 (346)
.
T Consensus 162 ~ 162 (180)
T 3sl7_A 162 D 162 (180)
T ss_dssp -
T ss_pred h
Confidence 4
Done!