BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036414
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N +L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N +L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N +L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N +L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N +L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 166 FPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLEL 222
P+L+ L L+ L + G L+ LIL C+ L LP ++ R+ L KL+L
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N L E P L L +L+ L L++NS +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
P L +LSL+N L E P L L +L+ L L++NS +
Sbjct: 149 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 186
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESL 196
+E + L+ L L NS+ +L + +SFP L+ L++K + + +G + KLE+L
Sbjct: 296 IEGMNSLKKLVLNANSF--DQLCQINAASFPSLRDLYIKGN--MRKLDLGTRCLEKLENL 351
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 117 PSLTQLSLSNTELIE----DPMPTLEKLPHLEVLK 147
P LT+L L+N L+E DP+ +L+ L +L +L+
Sbjct: 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSM 177
SL +L L N +L P +KL L+ LKL N +++ S +LK+L L+
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQEN 215
Query: 178 LW 179
W
Sbjct: 216 PW 217
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 104 QITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGC 163
QIT++ + LT+L L N +L P +KL L L L N
Sbjct: 49 QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL---------- 98
Query: 164 SSFPQLKILHLKSM--LWL 180
S P+ +LKS+ +WL
Sbjct: 99 KSIPRGAFDNLKSLTHIWL 117
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 114 KFPPSLTQLSLSNTELIEDPM--PTLEKL----PHL-EVLKLKQN 151
PPSL +L++SN +LIE P P LE+L HL EV +L QN
Sbjct: 314 DLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQN 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,428,419
Number of Sequences: 62578
Number of extensions: 271141
Number of successful extensions: 536
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 25
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)