Query 036414
Match_columns 252
No_of_seqs 151 out of 2217
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 12:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 6.4E-21 1.4E-25 179.2 13.2 211 4-225 150-366 (968)
2 PLN00113 leucine-rich repeat r 99.8 4.5E-20 9.8E-25 173.5 11.9 208 7-225 178-414 (968)
3 KOG0444 Cytoskeletal regulator 99.7 1.4E-19 3.1E-24 154.2 -1.8 230 8-252 94-358 (1255)
4 KOG0444 Cytoskeletal regulator 99.7 2E-19 4.4E-24 153.3 -2.8 159 55-226 214-373 (1255)
5 PLN03210 Resistant to P. syrin 99.7 4.6E-17 9.9E-22 154.7 12.6 218 1-226 618-904 (1153)
6 PLN03210 Resistant to P. syrin 99.7 2.1E-16 4.6E-21 150.2 12.1 208 4-226 599-836 (1153)
7 KOG4194 Membrane glycoprotein 99.7 1.6E-17 3.5E-22 140.5 0.8 210 3-225 206-426 (873)
8 KOG0472 Leucine-rich repeat pr 99.6 2.1E-18 4.6E-23 139.9 -6.9 205 4-226 101-308 (565)
9 KOG4194 Membrane glycoprotein 99.6 3.3E-16 7.1E-21 132.7 2.7 209 4-225 88-327 (873)
10 KOG0472 Leucine-rich repeat pr 99.5 3E-17 6.5E-22 133.3 -8.5 206 3-226 77-286 (565)
11 KOG0617 Ras suppressor protein 99.5 7E-16 1.5E-20 112.1 -3.4 163 37-214 29-195 (264)
12 KOG0618 Serine/threonine phosp 99.5 1.4E-15 3.1E-20 134.6 -3.9 209 3-226 250-487 (1081)
13 cd00116 LRR_RI Leucine-rich re 99.5 2.3E-14 5E-19 118.5 2.5 212 7-226 41-289 (319)
14 KOG0617 Ras suppressor protein 99.4 1.7E-15 3.7E-20 110.1 -4.1 164 13-190 29-195 (264)
15 cd00116 LRR_RI Leucine-rich re 99.4 1.3E-13 2.9E-18 114.0 3.7 211 10-226 16-261 (319)
16 KOG4237 Extracellular matrix p 99.4 6.2E-15 1.3E-19 119.6 -4.9 93 3-98 76-173 (498)
17 PRK15370 E3 ubiquitin-protein 99.4 3.4E-12 7.4E-17 115.4 9.9 127 4-153 188-316 (754)
18 PRK15370 E3 ubiquitin-protein 99.4 2.7E-12 5.8E-17 116.0 9.1 195 2-226 207-426 (754)
19 KOG0618 Serine/threonine phosp 99.3 9.1E-14 2E-18 123.4 -2.1 185 3-203 273-488 (1081)
20 PRK15387 E3 ubiquitin-protein 99.3 1.6E-11 3.5E-16 110.8 11.5 74 142-226 383-456 (788)
21 KOG2120 SCF ubiquitin ligase, 99.1 1.8E-12 4E-17 102.0 -4.1 174 42-226 186-374 (419)
22 PRK15387 E3 ubiquitin-protein 99.0 6.8E-10 1.5E-14 100.5 8.7 124 64-212 343-466 (788)
23 PF14580 LRR_9: Leucine-rich r 99.0 6.5E-11 1.4E-15 88.5 0.9 131 87-228 17-153 (175)
24 KOG3207 Beta-tubulin folding c 99.0 9.8E-11 2.1E-15 96.6 1.0 217 3-227 130-366 (505)
25 PF14580 LRR_9: Leucine-rich r 99.0 2.1E-10 4.6E-15 85.8 2.7 129 61-201 17-150 (175)
26 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3.1E-16 104.6 -5.1 167 20-204 78-247 (722)
27 KOG4237 Extracellular matrix p 98.9 4E-11 8.7E-16 97.8 -3.5 93 3-99 100-198 (498)
28 KOG3207 Beta-tubulin folding c 98.9 3E-10 6.6E-15 93.8 0.4 81 141-224 246-335 (505)
29 COG4886 Leucine-rich repeat (L 98.9 3.1E-09 6.7E-14 90.7 6.1 180 10-206 109-292 (394)
30 KOG0532 Leucine-rich repeat (L 98.9 2.9E-10 6.2E-15 96.8 -0.5 159 4-177 108-270 (722)
31 KOG1259 Nischarin, modulator o 98.8 7.3E-10 1.6E-14 87.8 0.1 128 62-204 283-412 (490)
32 KOG4658 Apoptotic ATPase [Sign 98.8 4E-09 8.7E-14 97.3 4.0 91 6-99 559-652 (889)
33 KOG1909 Ran GTPase-activating 98.8 1.3E-09 2.8E-14 87.7 0.3 85 13-98 26-129 (382)
34 KOG1909 Ran GTPase-activating 98.8 3.3E-09 7.2E-14 85.4 2.4 137 13-153 88-253 (382)
35 KOG2120 SCF ubiquitin ligase, 98.7 9.2E-10 2E-14 87.0 -1.3 197 18-219 186-391 (419)
36 KOG4658 Apoptotic ATPase [Sign 98.7 1.4E-08 3.1E-13 93.6 5.6 95 4-100 582-679 (889)
37 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.5E-14 85.9 -0.8 128 41-183 284-414 (490)
38 COG4886 Leucine-rich repeat (L 98.7 2.4E-08 5.2E-13 85.2 4.8 173 36-225 111-287 (394)
39 KOG4341 F-box protein containi 98.6 5.2E-09 1.1E-13 86.2 0.1 215 15-235 214-446 (483)
40 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.4E-12 57.0 3.4 59 118-178 2-60 (61)
41 PLN03150 hypothetical protein; 98.4 5.3E-07 1.1E-11 81.2 6.3 105 65-178 420-526 (623)
42 PLN03150 hypothetical protein; 98.4 7.1E-07 1.5E-11 80.4 7.1 102 43-152 420-526 (623)
43 PF13855 LRR_8: Leucine rich r 98.3 4.6E-07 9.9E-12 55.8 1.9 57 90-152 2-60 (61)
44 KOG2982 Uncharacterized conser 98.2 3.4E-07 7.3E-12 72.8 -0.2 85 139-225 197-289 (418)
45 KOG0531 Protein phosphatase 1, 98.1 3E-07 6.5E-12 79.0 -1.8 128 15-155 70-200 (414)
46 KOG3665 ZYG-1-like serine/thre 98.1 1.2E-06 2.7E-11 79.1 1.6 133 63-205 122-264 (699)
47 KOG1859 Leucine-rich repeat pr 98.0 1.9E-07 4.1E-12 82.3 -4.1 108 111-226 182-290 (1096)
48 KOG0531 Protein phosphatase 1, 98.0 5.9E-07 1.3E-11 77.2 -1.8 113 6-130 84-199 (414)
49 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 4E-10 59.6 5.2 61 117-178 64-124 (233)
50 KOG3665 ZYG-1-like serine/thre 97.9 5.2E-06 1.1E-10 75.2 2.1 138 89-235 122-272 (699)
51 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-05 2.6E-10 63.4 2.6 162 12-178 25-225 (388)
52 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.7E-10 44.6 2.9 37 167-204 1-37 (44)
53 PRK15386 type III secretion pr 97.8 0.00022 4.7E-09 60.4 9.5 135 13-177 48-187 (426)
54 KOG4341 F-box protein containi 97.8 1.9E-06 4.1E-11 71.4 -2.8 106 42-150 139-251 (483)
55 KOG1859 Leucine-rich repeat pr 97.7 7.1E-07 1.5E-11 78.8 -5.7 125 65-204 166-292 (1096)
56 KOG2982 Uncharacterized conser 97.7 2.6E-05 5.7E-10 62.3 2.7 82 116-198 198-286 (418)
57 KOG1644 U2-associated snRNP A' 97.6 5.8E-05 1.3E-09 57.0 3.7 107 117-228 42-153 (233)
58 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 60.7 6.7 137 37-202 48-188 (426)
59 KOG4579 Leucine-rich repeat (L 97.5 8.6E-06 1.9E-10 57.7 -2.5 85 85-178 49-134 (177)
60 PF12799 LRR_4: Leucine Rich r 97.4 0.00023 4.9E-09 40.4 3.5 35 118-153 2-36 (44)
61 KOG2123 Uncharacterized conser 97.4 1.7E-05 3.6E-10 62.8 -1.9 112 117-235 19-138 (388)
62 COG5238 RNA1 Ran GTPase-activa 97.3 0.00013 2.8E-09 57.8 2.3 41 13-54 88-132 (388)
63 KOG1947 Leucine rich repeat pr 97.3 5.4E-05 1.2E-09 66.1 -0.4 134 61-198 186-328 (482)
64 KOG2739 Leucine-rich acidic nu 97.1 8.7E-05 1.9E-09 58.1 -0.5 36 166-202 90-127 (260)
65 KOG1947 Leucine rich repeat pr 97.1 6E-05 1.3E-09 65.8 -2.0 34 193-226 403-438 (482)
66 KOG4579 Leucine-rich repeat (L 97.0 6.1E-05 1.3E-09 53.5 -2.2 73 49-130 60-136 (177)
67 KOG2739 Leucine-rich acidic nu 96.9 0.0004 8.6E-09 54.5 1.4 114 33-150 35-152 (260)
68 KOG2123 Uncharacterized conser 96.8 4.4E-05 9.4E-10 60.5 -4.8 59 117-178 41-99 (388)
69 KOG3864 Uncharacterized conser 96.3 0.0013 2.8E-08 49.8 0.6 81 64-150 102-185 (221)
70 KOG3864 Uncharacterized conser 96.1 0.00062 1.3E-08 51.5 -2.0 34 118-151 102-135 (221)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.025 5.4E-07 26.6 1.7 19 168-187 1-19 (22)
72 PF13306 LRR_5: Leucine rich r 94.5 0.095 2.1E-06 36.9 5.1 30 117-148 81-110 (129)
73 PF13504 LRR_7: Leucine rich r 94.5 0.032 7E-07 24.5 1.7 15 168-183 2-16 (17)
74 PF13306 LRR_5: Leucine rich r 92.7 0.32 7E-06 34.1 5.2 80 60-150 9-90 (129)
75 smart00370 LRR Leucine-rich re 84.7 0.64 1.4E-05 22.5 1.3 17 167-184 2-18 (26)
76 smart00369 LRR_TYP Leucine-ric 84.7 0.64 1.4E-05 22.5 1.3 17 167-184 2-18 (26)
77 PF13516 LRR_6: Leucine Rich r 83.3 0.7 1.5E-05 21.9 1.1 12 63-74 2-13 (24)
78 smart00367 LRR_CC Leucine-rich 82.5 0.84 1.8E-05 22.2 1.2 12 191-202 2-13 (26)
79 KOG4308 LRR-containing protein 76.7 0.026 5.6E-07 49.4 -9.1 108 117-226 172-301 (478)
80 KOG3763 mRNA export factor TAP 76.4 1.6 3.5E-05 38.5 1.7 83 138-222 215-308 (585)
81 smart00364 LRR_BAC Leucine-ric 65.5 4 8.7E-05 20.0 1.0 17 168-185 3-19 (26)
82 KOG3763 mRNA export factor TAP 64.3 3.2 7E-05 36.7 1.0 80 117-197 218-307 (585)
83 smart00365 LRR_SD22 Leucine-ri 60.1 8.7 0.00019 18.8 1.7 12 167-178 2-13 (26)
84 smart00368 LRR_RI Leucine rich 57.5 3.8 8.3E-05 20.3 0.2 15 117-131 2-16 (28)
85 KOG0473 Leucine-rich repeat pr 49.2 0.29 6.4E-06 38.4 -6.9 57 63-128 65-122 (326)
86 KOG0473 Leucine-rich repeat pr 31.3 2.6 5.6E-05 33.3 -4.2 88 6-98 30-120 (326)
87 PRK09582 chaB cation transport 25.7 41 0.00088 21.4 1.1 17 1-17 1-18 (76)
88 smart00446 LRRcap occurring C- 22.7 51 0.0011 16.2 0.9 14 12-25 8-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=6.4e-21 Score=179.16 Aligned_cols=211 Identities=21% Similarity=0.246 Sum_probs=148.5
Q ss_pred CCcc-ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 4 SYID-HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 4 ~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
+.+. .+|.+++.+++|++|++++|.+....|..+.++++|++|+ ++.|.. .|..++++++|+.|++++|. ...
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~ 226 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT-LASNQLVGQIPRELGQMKSLKWIYLGYNN--LSG 226 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee-ccCCCCcCcCChHHcCcCCccEEECcCCc--cCC
Confidence 4443 6677888888888888887777777788888888888888 777765 57778888888888888876 556
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL 158 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 158 (252)
.+|..+.++++|++|++.+|.-.+. +| .+..+ ++|++|++++|.+.+..|..++.+++|++|++++|.+.+...
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccc----cChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 7777788888888888887432234 55 66666 777777777777766667777777777777777666544322
Q ss_pred eecCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 159 ACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
.. ..++++|+.|++++|. +. .++..++.+++|+.|++++|.....+|..+..+++|+.|+++++
T Consensus 302 -~~-~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 302 -EL-VIQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred -hh-HcCCCCCcEEECCCCc-cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 12 4566777777777776 43 34555566677777777777666566666666667777776654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=4.5e-20 Score=173.46 Aligned_cols=208 Identities=23% Similarity=0.247 Sum_probs=134.3
Q ss_pred cccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH
Q 036414 7 DHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK 83 (252)
Q Consensus 7 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (252)
+.+|.+++++++|++|++++|.+...+|..+.++++|++|+ ++.+.. .|..++.+++|++|++++|. ....+|.
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~ 254 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY-LGYNNLSGEIPYEIGGLTSLNHLDLVYNN--LTGPIPS 254 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE-CcCCccCCcCChhHhcCCCCCEEECcCce--eccccCh
Confidence 46788888888888888888877777888888888888888 777765 66778888888888888886 5556777
Q ss_pred hhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecC
Q 036414 84 SLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVG 162 (252)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 162 (252)
.+.++++|+.|++.++.-.+. +| .+..+ ++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.... .
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~- 327 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGP----IPPSIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-A- 327 (968)
T ss_pred hHhCCCCCCEEECcCCeeecc----CchhHhhc-cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-h-
Confidence 778888888888877322233 44 55555 6666666666666655566666666666666665554432211 2
Q ss_pred CCCCccccEEEecCCcccc-ceeccccccc------------------------cccceeeccCCCCCCChHHHHhcccc
Q 036414 163 CSSFPQLKILHLKSMLWLE-EWTMGAGAMP------------------------KLESLILNPCAYLRKLPEELWRIKSL 217 (252)
Q Consensus 163 ~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~------------------------~L~~L~l~~~~~~~~~p~~l~~l~~L 217 (252)
...+++|+.|++++|. +. .++...+.++ +|+.|++++|.....+|..+..+++|
T Consensus 328 ~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 328 LTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred HhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 3445555555555555 32 3333344444 45555555554444555556666666
Q ss_pred ceeecccC
Q 036414 218 CKLELHWP 225 (252)
Q Consensus 218 ~~L~l~~~ 225 (252)
+.|++.++
T Consensus 407 ~~L~L~~n 414 (968)
T PLN00113 407 RRVRLQDN 414 (968)
T ss_pred CEEECcCC
Confidence 66666655
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=1.4e-19 Score=154.15 Aligned_cols=230 Identities=20% Similarity=0.197 Sum_probs=150.9
Q ss_pred ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccccchhHh
Q 036414 8 HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYHSGVSKS 84 (252)
Q Consensus 8 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (252)
-+|..|.++..|+.||++.|.+ .+.|..+...+++-+|. +++|++ +|.. +-+++.|-.|+|+.| ....+|+.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLN-LS~N~IetIPn~lfinLtDLLfLDLS~N---rLe~LPPQ 168 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLN-LSYNNIETIPNSLFINLTDLLFLDLSNN---RLEMLPPQ 168 (1255)
T ss_pred CCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEE-cccCccccCCchHHHhhHhHhhhccccc---hhhhcCHH
Confidence 3566666666666666664433 34555555555555665 555554 3333 223444445555555 24444444
Q ss_pred hhccCCCCeEEeeec------------------------cc-hhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh
Q 036414 85 LCELHKLECLKLANQ------------------------GK-MWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE 138 (252)
Q Consensus 85 l~~l~~L~~L~l~~~------------------------~~-~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 138 (252)
+..+.+|+.|.+++| .. +.+ +| .+-.+ .||..+|++.|.+. ..|..+.
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N----~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN----IPTSLDDL-HNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc----CCCchhhh-hhhhhccccccCCC-cchHHHh
Confidence 444444555544442 11 133 67 77777 88999999988887 6788888
Q ss_pred cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCC-CCCChHHHHhcccc
Q 036414 139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY-LRKLPEELWRIKSL 217 (252)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L 217 (252)
.+++|+.|++++|.++. .... .+.+.+|++|+++.|+ ++.+|.....+++|+.|.+.+|.. .+++|++|+.+.+|
T Consensus 243 ~l~~LrrLNLS~N~ite--L~~~-~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITE--LNMT-EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred hhhhhheeccCcCceee--eecc-HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 99999999999998876 3333 6678899999999999 888888888999999999988874 45789999988888
Q ss_pred ceeecccCC-----HHHHHHHHhhccCcceeEeeeccCCC
Q 036414 218 CKLELHWPQ-----PELRQRLRAFEDMEWRYDIQLYPSGI 252 (252)
Q Consensus 218 ~~L~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (252)
+++..++.. +.+.+....+.-..+.+++-.+|..|
T Consensus 319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred HHHHhhccccccCchhhhhhHHHHHhcccccceeechhhh
Confidence 888777653 22222222212455566666666544
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=2e-19 Score=153.27 Aligned_cols=159 Identities=25% Similarity=0.292 Sum_probs=121.8
Q ss_pred chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCC
Q 036414 55 TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDP 133 (252)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~ 133 (252)
+|..+..++||+.++++.| ....+|+.+.++++|+.|++++ +.+.+ +. ....+ .+|+.|+++.|+++ ..
T Consensus 214 ~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-N~ite----L~~~~~~W-~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-NKITE----LNMTEGEW-ENLETLNLSRNQLT-VL 283 (1255)
T ss_pred CCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-Cceee----eeccHHHH-hhhhhhccccchhc-cc
Confidence 5555666677777777776 5666777777777777777777 55544 33 44444 67788888888877 67
Q ss_pred chhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHh
Q 036414 134 MPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWR 213 (252)
Q Consensus 134 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 213 (252)
|.++..+++|+.|.+..|..+-+-++. |.+.+..|+.+...+|. ++-+|..++.|++|+.|.++.|... .+|++|.-
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl 360 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL 360 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee-echhhhhh
Confidence 888888888888888777765444553 37888889988888888 8888888899999999999887764 78999988
Q ss_pred ccccceeecccCC
Q 036414 214 IKSLCKLELHWPQ 226 (252)
Q Consensus 214 l~~L~~L~l~~~~ 226 (252)
++.|++|++...|
T Consensus 361 L~~l~vLDlreNp 373 (1255)
T KOG0444|consen 361 LPDLKVLDLRENP 373 (1255)
T ss_pred cCCcceeeccCCc
Confidence 9999999998765
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=4.6e-17 Score=154.65 Aligned_cols=218 Identities=19% Similarity=0.211 Sum_probs=134.5
Q ss_pred CCCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 1 MPSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 1 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
|+++.++.+|.++..+++|+.|+++++.....+|. +..+++|+.|+ +..|.. +|..++.+++|+.|++++|. .
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~-L~~c~~L~~lp~si~~L~~L~~L~L~~c~--~ 693 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK-LSDCSSLVELPSSIQYLNKLEDLDMSRCE--N 693 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE-ecCCCCccccchhhhccCCCCEEeCCCCC--C
Confidence 45667777777777888888888886665555654 67777888888 666543 66667777888888887775 4
Q ss_pred ccchhHhhhccCCCCeEEeeeccchhHH----HHh------------hc-cc----------------------------
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMWQI----TRM------------IL-SE---------------------------- 112 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~l------------~~-~~---------------------------- 112 (252)
...+|..+ .+++|+.|++.+|..+..+ .++ +| .+
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchh
Confidence 55555443 4566666666554322110 000 11 00
Q ss_pred -cCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcc------------
Q 036414 113 -YKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLW------------ 179 (252)
Q Consensus 113 -~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------ 179 (252)
...+++|+.|++++|......|..++.+++|+.|++++|......+. ...+++|+.|++++|..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~---~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~ 849 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT---GINLESLESLDLSGCSRLRTFPDISTNIS 849 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC---CCCccccCEEECCCCCccccccccccccC
Confidence 01124666777777665556777788888888888877643221111 11344455555544433
Q ss_pred --------ccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 180 --------LEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 180 --------l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
++++|..++.+++|+.|++.+|+.+..+|..+..+++|+.+++.+|.
T Consensus 850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 44445555667777777777777777777666677777777777775
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=2.1e-16 Score=150.18 Aligned_cols=208 Identities=22% Similarity=0.196 Sum_probs=149.8
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV 81 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (252)
+.++.+|..+ ...+|++|++.++.+ ..++.++..+++|+.|+ ++.+.. ..+.++.+++|++|++++|. ....+
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~-Ls~~~~l~~ip~ls~l~~Le~L~L~~c~--~L~~l 673 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSKL-EKLWDGVHSLTGLRNID-LRGSKNLKEIPDLSMATNLETLKLSDCS--SLVEL 673 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCccc-cccccccccCCCCCEEE-CCCCCCcCcCCccccCCcccEEEecCCC--Ccccc
Confidence 4456666655 457888888886553 45777788899999999 876643 34457889999999999987 67888
Q ss_pred hHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee---
Q 036414 82 SKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL--- 158 (252)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--- 158 (252)
|..+..+++|+.|++.+|+.+.. +|...++ ++|++|++++|......|.. ..+|+.|+++++.+.....
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~----Lp~~i~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~ 745 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEI----LPTGINL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLR 745 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCc----cCCcCCC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccccc
Confidence 99999999999999999777776 7733366 88888888887554344422 3456666665554322110
Q ss_pred -------------------------eecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHh
Q 036414 159 -------------------------ACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWR 213 (252)
Q Consensus 159 -------------------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 213 (252)
... ...+++|+.|++++|+.+.++|..++++++|+.|++++|..++.+|..+ .
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred ccccccccccccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 000 1124578888888887677788878888889999998888777787765 6
Q ss_pred ccccceeecccCC
Q 036414 214 IKSLCKLELHWPQ 226 (252)
Q Consensus 214 l~~L~~L~l~~~~ 226 (252)
+++|+.|++++|.
T Consensus 824 L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 824 LESLESLDLSGCS 836 (1153)
T ss_pred ccccCEEECCCCC
Confidence 7888888888875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-17 Score=140.49 Aligned_cols=210 Identities=20% Similarity=0.179 Sum_probs=129.9
Q ss_pred CCCccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccc
Q 036414 3 SSYIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 3 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~ 78 (252)
.|+|+.||.. +.++++|+.|++..|.+...---.|.++++|+.|. +..|++ +-++ +..|.++++|+|..|. ..
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk-lqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~ 282 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK-LQRNDISKLDDGAFYGLEKMEHLNLETNR--LQ 282 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh-hhhcCcccccCcceeeecccceeecccch--hh
Confidence 4788888875 45599999999987776544344577888888888 777766 2222 5568888899988885 33
Q ss_pred cchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
..--..+.++++|+.|++++ +.+.. +. .|..- .+|+.|+++.|++++..+..+..+..|++|+++.|++...
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~-NaI~r----ih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSY-NAIQR----IHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred hhhcccccccchhhhhccch-hhhhe----eecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 33345567888888888888 55543 32 44444 8888888888888877777777777777777766665331
Q ss_pred eeeecCCCCCccccEEEecCCccccc-ee---ccccccccccceeeccCCCCCCChH-HHHhccccceeecccC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEE-WT---MGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWP 225 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~-~~---~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~ 225 (252)
.-. . +.++.+|++|+|+.|. +.- +. ..+..+++|++|++.||+. +.+|. .+..++.|++|++.+.
T Consensus 357 ~e~-a-f~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 357 AEG-A-FVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred Hhh-H-HHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCcee-eecchhhhccCcccceecCCCC
Confidence 111 1 2345555555555555 331 11 1123355555555555443 33332 3344555555555443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=2.1e-18 Score=139.87 Aligned_cols=205 Identities=18% Similarity=0.137 Sum_probs=142.3
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV 81 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (252)
+.+.++|.+++.+..|++++.++|.+ .++++.++.+..++.++ ...+.. .|.+++++..+..+++.++ ...++
T Consensus 101 n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~-~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l 175 (565)
T KOG0472|consen 101 NKLSELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLD-ATNNQISSLPEDMVNLSKLSKLDLEGN---KLKAL 175 (565)
T ss_pred chHhhccHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhh-ccccccccCchHHHHHHHHHHhhcccc---chhhC
Confidence 44455555555555555555554433 24455555555555555 444433 5556666666666666666 34555
Q ss_pred hHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414 82 SKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC 160 (252)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 160 (252)
|+....++.|++++... +.++. +| .++.+ .+|..++++.|.+. ..| .|..|+.|+++.++.|.+.- ....
T Consensus 176 ~~~~i~m~~L~~ld~~~-N~L~t----lP~~lg~l-~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae 246 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNS-NLLET----LPPELGGL-ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAE 246 (565)
T ss_pred CHHHHHHHHHHhcccch-hhhhc----CChhhcch-hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHH
Confidence 55544566777776665 54555 77 88888 88888888888876 344 67788888888886665532 1222
Q ss_pred cCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 161 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
. ...++++.+||+.+|+ ++++|.++.-+.+|++|++++|.++ .+|..++++ .|+.|-+.|.|
T Consensus 247 ~-~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 247 H-LKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred H-hcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence 3 4589999999999999 9999999999999999999998764 789889998 89999999987
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=3.3e-16 Score=132.66 Aligned_cols=209 Identities=22% Similarity=0.208 Sum_probs=120.4
Q ss_pred CCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 4 SYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 4 ~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
|.+.++ +..|.++++|+.+++.+|. ...+|.+....-+++.|+ +..|.+ ..+++..++.|+.|+|+.| ...
T Consensus 88 Nkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~-L~~N~I~sv~se~L~~l~alrslDLSrN---~is 162 (873)
T KOG4194|consen 88 NKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLD-LRHNLISSVTSEELSALPALRSLDLSRN---LIS 162 (873)
T ss_pred cccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEe-eeccccccccHHHHHhHhhhhhhhhhhc---hhh
Confidence 445555 3346677777777777443 345666555556677777 666655 4455666777777777777 333
Q ss_pred chh-HhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 80 GVS-KSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 80 ~~~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
.++ ..+..-.++++|++++ +.+.. +. .+..+ .+|..+.++.|+++..++..|.++++|+.|++..|++...
T Consensus 163 ~i~~~sfp~~~ni~~L~La~-N~It~----l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLAS-NRITT----LETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred cccCCCCCCCCCceEEeecc-ccccc----ccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 333 2233335677777777 55533 32 45555 5667777777777755666666677777777766655332
Q ss_pred eeeecCCCCCccccEEEecCCcc-----------------------ccce-eccccccccccceeeccCCCCCCChHHHH
Q 036414 157 KLACVGCSSFPQLKILHLKSMLW-----------------------LEEW-TMGAGAMPKLESLILNPCAYLRKLPEELW 212 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~-----------------------l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 212 (252)
++. . +.++++|+.|.+..|.- +..+ ..+.-++.+|+.|++++|.+.+--+....
T Consensus 237 e~l-t-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 237 EGL-T-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hhh-h-hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 221 2 34455555554444440 3322 11223456677777777665544455566
Q ss_pred hccccceeecccC
Q 036414 213 RIKSLCKLELHWP 225 (252)
Q Consensus 213 ~l~~L~~L~l~~~ 225 (252)
.+++|++|+++..
T Consensus 315 ftqkL~~LdLs~N 327 (873)
T KOG4194|consen 315 FTQKLKELDLSSN 327 (873)
T ss_pred hcccceeEecccc
Confidence 6777777777654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=3e-17 Score=133.27 Aligned_cols=206 Identities=22% Similarity=0.252 Sum_probs=153.0
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
++.+.++|++++.+.+++.+++++|. ..++|..+..+..+..++ .+.+.. .+++++.+..+..++..+| ....
T Consensus 77 ~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~-~s~n~~~el~~~i~~~~~l~dl~~~~N---~i~s 151 (565)
T KOG0472|consen 77 DNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLD-CSSNELKELPDSIGRLLDLEDLDATNN---QISS 151 (565)
T ss_pred cchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhh-ccccceeecCchHHHHhhhhhhhcccc---cccc
Confidence 35566667777777777777766433 335666666666677776 555554 6666667777777766666 4566
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA 159 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 159 (252)
+|+.+..+.++..+.+.+ +.+.+ +| ....| +.|+.+|...|.++ ..|..++.+.+|+.|++..|.+.. .+
T Consensus 152 lp~~~~~~~~l~~l~~~~-n~l~~----l~~~~i~m-~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~--lP 222 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEG-NKLKA----LPENHIAM-KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF--LP 222 (565)
T ss_pred CchHHHHHHHHHHhhccc-cchhh----CCHHHHHH-HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc--CC
Confidence 677777777777777766 55544 55 45557 89999988777776 788889999999999998888744 33
Q ss_pred ecCCCCCccccEEEecCCccccceecccc-ccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 160 CVGCSSFPQLKILHLKSMLWLEEWTMGAG-AMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+ ++++..|+++++..|. ++.+|.+.+ +++++..|++..|.. ++.|.++-.+.+|..|++++..
T Consensus 223 -e-f~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 223 -E-FPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred -C-CCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCc
Confidence 4 7889999999999888 888877665 899999999999865 6899999889999999998764
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7e-16 Score=112.05 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=130.9
Q ss_pred cCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-ccc
Q 036414 37 SSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEY 113 (252)
Q Consensus 37 l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~ 113 (252)
+-++.+...|. ++.++. .|+.+..+.+|+.|+++++ ....+|.++..+++|+.|++.- +.+.. +| .++
T Consensus 29 Lf~~s~ITrLt-LSHNKl~~vppnia~l~nlevln~~nn---qie~lp~~issl~klr~lnvgm-nrl~~----lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLT-LSHNKLTVVPPNIAELKNLEVLNLSNN---QIEELPTSISSLPKLRILNVGM-NRLNI----LPRGFG 99 (264)
T ss_pred ccchhhhhhhh-cccCceeecCCcHHHhhhhhhhhcccc---hhhhcChhhhhchhhhheecch-hhhhc----CccccC
Confidence 45666677777 888887 7888889999999999888 6888899999999999999887 66655 78 889
Q ss_pred CCCCCCceEEeeecccC-CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccccc
Q 036414 114 KFPPSLTQLSLSNTELI-EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK 192 (252)
Q Consensus 114 ~~~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 192 (252)
++ |-|+.||+.++++. ...|..|..+..|+.|.+++|.+.- .+-. .+.+++|+.|.+.+|. +-++|.+.+.+..
T Consensus 100 s~-p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~d-vg~lt~lqil~lrdnd-ll~lpkeig~lt~ 174 (264)
T KOG0617|consen 100 SF-PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPD-VGKLTNLQILSLRDND-LLSLPKEIGDLTR 174 (264)
T ss_pred CC-chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChh-hhhhcceeEEeeccCc-hhhCcHHHHHHHH
Confidence 98 99999999988775 3466777778888889998887643 3334 7789999999999988 7788888899999
Q ss_pred ccceeeccCCCCCCChHHHHhc
Q 036414 193 LESLILNPCAYLRKLPEELWRI 214 (252)
Q Consensus 193 L~~L~l~~~~~~~~~p~~l~~l 214 (252)
|+.|.+++|... .+|..+.++
T Consensus 175 lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHHhcccceee-ecChhhhhh
Confidence 999999998754 577666554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=1.4e-15 Score=134.60 Aligned_cols=209 Identities=23% Similarity=0.211 Sum_probs=152.6
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
++.+..+|+-++.|.+|+.+++.+|.+ ..+|..+..++.|+.|. ...++. +|+.......|++|+|..|. ...
T Consensus 250 ~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~-~~~nel~yip~~le~~~sL~tLdL~~N~---L~~ 324 (1081)
T KOG0618|consen 250 HNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLS-AAYNELEYIPPFLEGLKSLRTLDLQSNN---LPS 324 (1081)
T ss_pred hhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHH-hhhhhhhhCCCcccccceeeeeeehhcc---ccc
Confidence 356778887788999999999886666 67777788888888888 777766 77777778888888888774 333
Q ss_pred hhHhhhc--------------------------cCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCc
Q 036414 81 VSKSLCE--------------------------LHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPM 134 (252)
Q Consensus 81 ~~~~l~~--------------------------l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~ 134 (252)
+|..+-. +..|+.|++.+ +.+. .+.+|.+..+ .+|+.|++++|++...+-
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Lt--d~c~p~l~~~-~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLT--DSCFPVLVNF-KHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Cccc--ccchhhhccc-cceeeeeecccccccCCH
Confidence 4332111 11233444444 2220 0116777777 999999999999986667
Q ss_pred hhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCC-ChHHHHh
Q 036414 135 PTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRK-LPEELWR 213 (252)
Q Consensus 135 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~ 213 (252)
..+.++..|++|++++|+.+... .. ...++.|++|...+|+ +..+| ++..++.|+.++++.|+.... +|....
T Consensus 401 s~~~kle~LeeL~LSGNkL~~Lp--~t-va~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p- 474 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLTTLP--DT-VANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP- 474 (1081)
T ss_pred HHHhchHHhHHHhcccchhhhhh--HH-HHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCC-
Confidence 78889999999999999987633 34 6788999999988888 88888 688899999999988876542 344332
Q ss_pred ccccceeecccCC
Q 036414 214 IKSLCKLELHWPQ 226 (252)
Q Consensus 214 l~~L~~L~l~~~~ 226 (252)
-++|++|+++|.+
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 2799999999887
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=2.3e-14 Score=118.55 Aligned_cols=212 Identities=21% Similarity=0.162 Sum_probs=144.2
Q ss_pred cccchHHHhhccccEEEecCCCCCC------CCCcccCCCCCCcEecccCCCCC---chhhcCCC---CCccEEEeeccC
Q 036414 7 DHSSEDIWMMQKLMHLNFGSITLPA------PPKNYSSSLKNLIFISALHPSSC---TPDILSRL---PTVQTLRISGDL 74 (252)
Q Consensus 7 ~~lp~~i~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l---~~L~~L~l~~~~ 74 (252)
..++..+...+.+++++++++.... .++..+..+++|+.|+ ++.+.. .+..+..+ ++|++|++++|.
T Consensus 41 ~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 41 KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD-LSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEE-ccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 4567677788889999999776541 2334567788999999 877765 33334333 459999999986
Q ss_pred Cccc----cchhHhhhcc-CCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCc----hhhhcCCC
Q 036414 75 SHYH----SGVSKSLCEL-HKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPM----PTLEKLPH 142 (252)
Q Consensus 75 ~~~~----~~~~~~l~~l-~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~ 142 (252)
.. ..+...+..+ ++|+++++.+|. +. .... ++ .+... ++|++|++++|.+.+... ..+...++
T Consensus 120 --~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 194 (319)
T cd00116 120 --LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEA-LAKALRAN-RDLKELNLANNGIGDAGIRALAEGLKANCN 194 (319)
T ss_pred --cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHH-HHHHHHhC-CCcCEEECcCCCCchHHHHHHHHHHHhCCC
Confidence 32 2334556677 899999999843 31 1000 23 45555 789999999998874332 33455679
Q ss_pred CceEEeccCCccCce---eeecCCCCCccccEEEecCCccccce--eccccc----cccccceeeccCCCCC----CChH
Q 036414 143 LEVLKLKQNSYFERK---LACVGCSSFPQLKILHLKSMLWLEEW--TMGAGA----MPKLESLILNPCAYLR----KLPE 209 (252)
Q Consensus 143 L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~----l~~L~~L~l~~~~~~~----~~p~ 209 (252)
|++|++++|.+.+.. +... ...+++|++|++++|+ +++. ...... .+.|+.|++++|...+ .+..
T Consensus 195 L~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 195 LEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 999999988775432 2223 5578899999999988 6642 111122 3789999999998653 2344
Q ss_pred HHHhccccceeecccCC
Q 036414 210 ELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 210 ~l~~l~~L~~L~l~~~~ 226 (252)
.+..+++|++++++++.
T Consensus 273 ~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 273 VLAEKESLLELDLRGNK 289 (319)
T ss_pred HHhcCCCccEEECCCCC
Confidence 56667889999998864
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.7e-15 Score=110.07 Aligned_cols=164 Identities=20% Similarity=0.286 Sum_probs=104.7
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK 90 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (252)
+.++.++++|.+++|.+ ..+|+.+..+.+|+.|. +..+.+ +|..++.++.|+.|++..+ ....+|..++.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl-~~vppnia~l~nlevln-~~nnqie~lp~~issl~klr~lnvgmn---rl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLN-LSNNQIEELPTSISSLPKLRILNVGMN---RLNILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCce-eecCCcHHHhhhhhhhh-cccchhhhcChhhhhchhhhheecchh---hhhcCccccCCCch
Confidence 45566667777774443 34566677777777777 666655 6777777777777777766 35566777777777
Q ss_pred CCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414 91 LECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169 (252)
Q Consensus 91 L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 169 (252)
|+.|++.+++--+.. +| .+..+ ..|+.|.++++.++ ..|..++.+.+|+.|.+..|.... .+.. .+.+..|
T Consensus 104 levldltynnl~e~~---lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--lpke-ig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENS---LPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--LPKE-IGDLTRL 175 (264)
T ss_pred hhhhhcccccccccc---CCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--CcHH-HHHHHHH
Confidence 777777763322221 45 45555 67777777777665 566667777777777776666543 3334 5666777
Q ss_pred cEEEecCCccccceecccccc
Q 036414 170 KILHLKSMLWLEEWTMGAGAM 190 (252)
Q Consensus 170 ~~L~l~~~~~l~~~~~~~~~l 190 (252)
++|++.+|+ +.-+|++.+.+
T Consensus 176 relhiqgnr-l~vlppel~~l 195 (264)
T KOG0617|consen 176 RELHIQGNR-LTVLPPELANL 195 (264)
T ss_pred HHHhcccce-eeecChhhhhh
Confidence 777777777 66666655443
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.3e-13 Score=113.99 Aligned_cols=211 Identities=21% Similarity=0.147 Sum_probs=122.4
Q ss_pred chHHHhhccccEEEecCCCCCC----CCCcccCCCCCCcEecccCCCCC---------chhhcCCCCCccEEEeeccCCc
Q 036414 10 SEDIWMMQKLMHLNFGSITLPA----PPKNYSSSLKNLIFISALHPSSC---------TPDILSRLPTVQTLRISGDLSH 76 (252)
Q Consensus 10 p~~i~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~~l~~~~~---------~~~~l~~l~~L~~L~l~~~~~~ 76 (252)
+..+..+.+|+.++++++.+.. .++..+...++++++. +..+.. .+..+..+++|++|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~-l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-- 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELC-LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-- 92 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEe-ccccccCCcchHHHHHHHHHHhcCceeEEEccCCC--
Confidence 3445666778888888666532 2444556666777777 554432 23445667788888888775
Q ss_pred cccchhHhhhccC---CCCeEEeeeccchh-HHHHhhc-cccCCCCCCceEEeeecccCCCC----chhhhcCCCCceEE
Q 036414 77 YHSGVSKSLCELH---KLECLKLANQGKMW-QITRMIL-SEYKFPPSLTQLSLSNTELIEDP----MPTLEKLPHLEVLK 147 (252)
Q Consensus 77 ~~~~~~~~l~~l~---~L~~L~l~~~~~~~-~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~ 147 (252)
.....+..+..+. +|++|++.++. +. .....+. .+..++++|+.+++++|.++... ...+..+++|++|+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 3333444444443 38888887742 31 1000011 22332367888888888776322 23345566788888
Q ss_pred eccCCccCceee---ecCCCCCccccEEEecCCccccc-----eeccccccccccceeeccCCCCCCChHHH-Hh----c
Q 036414 148 LKQNSYFERKLA---CVGCSSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLRKLPEEL-WR----I 214 (252)
Q Consensus 148 l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~----l 214 (252)
+++|.+.+.... .. ...+++|+.|++++|. +.+ +......+++|++|++++|...+.-...+ .. .
T Consensus 172 l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 172 LANNGIGDAGIRALAEG-LKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred CcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 877776542221 11 2345688888888876 542 22334567778888888877554111111 22 2
Q ss_pred cccceeecccCC
Q 036414 215 KSLCKLELHWPQ 226 (252)
Q Consensus 215 ~~L~~L~l~~~~ 226 (252)
+.|++|++.+|.
T Consensus 250 ~~L~~L~l~~n~ 261 (319)
T cd00116 250 ISLLTLSLSCND 261 (319)
T ss_pred CCceEEEccCCC
Confidence 678888887774
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=6.2e-15 Score=119.62 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred CCCccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCC-CCC--chhh-cCCCCCccEEEeeccCCcc
Q 036414 3 SSYIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHP-SSC--TPDI-LSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 3 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~-~~~--~~~~-l~~l~~L~~L~l~~~~~~~ 77 (252)
-|.|++||+. |+.+++||+||++.|.+...-|+.|.++..+..|. +.. +++ ++.. ++++..++.|.+.-++ .
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv-lyg~NkI~~l~k~~F~gL~slqrLllNan~--i 152 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLV-LYGNNKITDLPKGAFGGLSSLQRLLLNANH--I 152 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHH-hhcCCchhhhhhhHhhhHHHHHHHhcChhh--h
Confidence 4789999884 89999999999998888888899999999888887 555 554 4444 5556666666555554 3
Q ss_pred ccchhHhhhccCCCCeEEeee
Q 036414 78 HSGVSKSLCELHKLECLKLAN 98 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~ 98 (252)
.......+..++++..|++..
T Consensus 153 ~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 153 NCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred cchhHHHHHHhhhcchhcccc
Confidence 333444445555555554444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=3.4e-12 Score=115.38 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV 81 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (252)
..++++|..+. .+|+.|++++|.+. .+|..+. .+|+.|+ ++.|.+ +|..+. .+|+.|++++|. ...+
T Consensus 188 ~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~-Ls~N~LtsLP~~l~--~~L~~L~Ls~N~---L~~L 256 (754)
T PRK15370 188 LGLTTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLY-ANSNQLTSIPATLP--DTIQEMELSINR---ITEL 256 (754)
T ss_pred CCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEE-CCCCccccCChhhh--ccccEEECcCCc---cCcC
Confidence 45666666553 36777777755443 4555433 4677777 666655 343332 467777777763 3345
Q ss_pred hHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414 82 SKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153 (252)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 153 (252)
|..+. .+|+.|++++ +.+.. +|. .++++|++|++++|.++. .|..+ .++|+.|++++|.+
T Consensus 257 P~~l~--s~L~~L~Ls~-N~L~~----LP~--~l~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 257 PERLP--SALQSLDLFH-NKISC----LPE--NLPEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSL 316 (754)
T ss_pred ChhHh--CCCCEEECcC-CccCc----ccc--ccCCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcc
Confidence 55443 3677777765 44444 441 122566777777666653 22211 12445555544444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=2.7e-12 Score=116.05 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=125.9
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
.+|.++++|..+. .+|++|++++|.+. .+|..+. .+|+.|+ ++.|.+ +|..+. ++|+.|++++|. ..
T Consensus 207 s~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~-Ls~N~L~~LP~~l~--s~L~~L~Ls~N~---L~ 275 (754)
T PRK15370 207 DNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME-LSINRITELPERLP--SALQSLDLFHNK---IS 275 (754)
T ss_pred cCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE-CcCCccCcCChhHh--CCCCEEECcCCc---cC
Confidence 3578889998765 58999999977654 5665443 3688888 777776 554443 578888888774 34
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc-cc------------------cCCCCCCceEEeeecccCCCCchhhhcC
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL-SE------------------YKFPPSLTQLSLSNTELIEDPMPTLEKL 140 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~------------------~~~~~~L~~l~l~~~~~~~~~~~~l~~~ 140 (252)
.+|..+. ++|+.|++++ +.+.. +| .+ ..++++|+.|++++|.++. .|..+ .
T Consensus 276 ~LP~~l~--~sL~~L~Ls~-N~Lt~----LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--~ 345 (754)
T PRK15370 276 CLPENLP--EELRYLSVYD-NSIRT----LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL--P 345 (754)
T ss_pred ccccccC--CCCcEEECCC-Ccccc----CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh--c
Confidence 5565443 4788888877 33322 22 10 0123567777777777663 34333 3
Q ss_pred CCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHH----hccc
Q 036414 141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW----RIKS 216 (252)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~----~l~~ 216 (252)
++|+.|++++|.+.. ++.. -.++|+.|++++|. +..+|.... +.|+.|++++|... .+|..+. .++.
T Consensus 346 ~sL~~L~Ls~N~L~~--LP~~---lp~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 346 PELQVLDVSKNQITV--LPET---LPPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQ 416 (754)
T ss_pred CcccEEECCCCCCCc--CChh---hcCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence 678888888777653 2211 13578888888887 777765442 36888888887764 5665443 3477
Q ss_pred cceeecccCC
Q 036414 217 LCKLELHWPQ 226 (252)
Q Consensus 217 L~~L~l~~~~ 226 (252)
+..+++.+.+
T Consensus 417 l~~L~L~~Np 426 (754)
T PRK15370 417 PTRIIVEYNP 426 (754)
T ss_pred ccEEEeeCCC
Confidence 8888888876
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=9.1e-14 Score=123.38 Aligned_cols=185 Identities=22% Similarity=0.259 Sum_probs=146.9
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhc---------------------
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDIL--------------------- 59 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l--------------------- 59 (252)
.|++..+|..+....+|+.|++.+|.. ..+|+...++++|++|+ +..+.+ .|+.+
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLd-L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLD-LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeee-ehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 367888999999999999999985554 46788888899999999 887765 33221
Q ss_pred -----CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC
Q 036414 60 -----SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED 132 (252)
Q Consensus 60 -----~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~ 132 (252)
..+..|+.|.+.+|. ......+.+..+++|+.|++++ +.+.. +| .+.++ +.|+.|++++|.++ .
T Consensus 351 p~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLsy-NrL~~----fpas~~~kl-e~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLSY-NRLNS----FPASKLRKL-EELEELNLSGNKLT-T 421 (1081)
T ss_pred ccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeecc-ccccc----CCHHHHhch-HHhHHHhcccchhh-h
Confidence 013457778888887 7777778889999999999999 77766 77 77788 99999999999998 6
Q ss_pred CchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccc-ccccceeeccCCC
Q 036414 133 PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAM-PKLESLILNPCAY 203 (252)
Q Consensus 133 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~ 203 (252)
.|..+..++.|++|...+|.+.. ++ . ...++.|+.+|++.|. ++.+......- |+|++|+++||..
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~~--fP-e-~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLLS--FP-E-LAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCceee--ch-h-hhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcc
Confidence 77889999999999998777743 44 4 7789999999999998 88653322222 7999999999974
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=1.6e-11 Score=110.81 Aligned_cols=74 Identities=24% Similarity=0.172 Sum_probs=52.6
Q ss_pred CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceee
Q 036414 142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE 221 (252)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 221 (252)
+|+.|++++|.+.. ++ ...++|+.|++++|. ++.+|.. ..+|+.|++++|... .+|..+..+++|+.++
T Consensus 383 ~L~~LdLs~N~Lt~--LP----~l~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 383 GLKELIVSGNRLTS--LP----VLPSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred ccceEEecCCcccC--CC----CcccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 56666666665543 11 123568888888887 7776642 346788888887764 7898888999999999
Q ss_pred cccCC
Q 036414 222 LHWPQ 226 (252)
Q Consensus 222 l~~~~ 226 (252)
+++++
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 99886
No 21
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-12 Score=102.01 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=103.2
Q ss_pred CCcEecccCCCCCchh----hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc---cccC
Q 036414 42 NLIFISALHPSSCTPD----ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL---SEYK 114 (252)
Q Consensus 42 ~L~~L~~l~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~---~~~~ 114 (252)
.||+++ ++...+... .+..|.+|+.|.+.+.. ..+.+...+.+-.+|+.++++.++.+.+ .. .+.+
T Consensus 186 Rlq~lD-LS~s~it~stl~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~----n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLD-LSNSVITVSTLHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTE----NALQLLLSS 258 (419)
T ss_pred hhHHhh-cchhheeHHHHHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeeccccccccch----hHHHHHHHh
Confidence 467777 666655222 24556777777777776 6666777777777777777777665532 11 3344
Q ss_pred CCCCCceEEeeecccCCCCch-hhhc-CCCCceEEeccCCcc--CceeeecCCCCCccccEEEecCCccccc-eeccccc
Q 036414 115 FPPSLTQLSLSNTELIEDPMP-TLEK-LPHLEVLKLKQNSYF--ERKLACVGCSSFPQLKILHLKSMLWLEE-WTMGAGA 189 (252)
Q Consensus 115 ~~~~L~~l~l~~~~~~~~~~~-~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~ 189 (252)
. +.|..|++++|........ ++.+ -++|+.|+++++.-. ......- ...+|+|..||+++|.+++. ....+-.
T Consensus 259 c-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 259 C-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred h-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHh
Confidence 4 7777777777766533322 2222 346777777765421 1122222 35677777777777776653 2333456
Q ss_pred cccccceeeccCCCCCCChH---HHHhccccceeecccCC
Q 036414 190 MPKLESLILNPCAYLRKLPE---ELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 190 l~~L~~L~l~~~~~~~~~p~---~l~~l~~L~~L~l~~~~ 226 (252)
|+.|++|+++.|... .|. .+...|+|.+|++.+|-
T Consensus 337 f~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 777777777777533 233 24556777777777764
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.05 E-value=6.8e-10 Score=100.46 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=83.8
Q ss_pred CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCC
Q 036414 64 TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHL 143 (252)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 143 (252)
+|+.|++++|. ...+|.. ..+|+.|++.+ +.+.. +|. .+++|+.|++++|.++. .|.. .++|
T Consensus 343 ~Lq~LdLS~N~---Ls~LP~l---p~~L~~L~Ls~-N~L~~----LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s~L 404 (788)
T PRK15387 343 GLQELSVSDNQ---LASLPTL---PSELYKLWAYN-NRLTS----LPA---LPSGLKELIVSGNRLTS-LPVL---PSEL 404 (788)
T ss_pred ccceEecCCCc---cCCCCCC---Ccccceehhhc-ccccc----Ccc---cccccceEEecCCcccC-CCCc---ccCC
Confidence 45556665553 2233321 23455555554 33433 442 23688999999998874 3332 4689
Q ss_pred ceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHH
Q 036414 144 EVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW 212 (252)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~ 212 (252)
+.|++++|.+.. ++. ...+|+.|++++|+ ++.+|..++.+++|+.|++++|+..+..+..+.
T Consensus 405 ~~LdLS~N~Lss--IP~----l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 405 KELMVSGNRLTS--LPM----LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CEEEccCCcCCC--CCc----chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 999999998764 221 23478999999999 999998888999999999999998776665553
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=6.5e-11 Score=88.53 Aligned_cols=131 Identities=24% Similarity=0.244 Sum_probs=50.5
Q ss_pred ccCCCCeEEeeeccchhHHHHhhcccc-CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414 87 ELHKLECLKLANQGKMWQITRMILSEY-KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165 (252)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (252)
+..++++|++.+ +.+.. +..+. .+ .+|+.|++++|.+.. ...+..+++|++|++++|.+......+ ...
T Consensus 17 n~~~~~~L~L~~-n~I~~----Ie~L~~~l-~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l--~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQIST----IENLGATL-DKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGL--DKN 86 (175)
T ss_dssp ------------------------S--TT--TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH--HHH
T ss_pred cccccccccccc-ccccc----ccchhhhh-cCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccch--HHh
Confidence 334577777777 55544 34444 35 778888888888763 334666788888888888776532111 125
Q ss_pred CccccEEEecCCcccccee--ccccccccccceeeccCCCCCC---ChHHHHhccccceeecccCCHH
Q 036414 166 FPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRK---LPEELWRIKSLCKLELHWPQPE 228 (252)
Q Consensus 166 ~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~---~p~~l~~l~~L~~L~l~~~~~~ 228 (252)
+|+|+.|.+++|+ +.++. ...+.+|+|+.|++.+|+..+. ....+..+|+|+.||-..+.++
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 7888888888888 66552 2356788888888888886542 2345788999999998877643
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.8e-11 Score=96.61 Aligned_cols=217 Identities=18% Similarity=0.170 Sum_probs=134.0
Q ss_pred CCCccccch--HHHhhccccEEEecCCCCCC--CCCcccCCCCCCcEecccCCCCC-chhh---cCCCCCccEEEeeccC
Q 036414 3 SSYIDHSSE--DIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALHPSSC-TPDI---LSRLPTVQTLRISGDL 74 (252)
Q Consensus 3 ~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~~l~~~~~-~~~~---l~~l~~L~~L~l~~~~ 74 (252)
++.++-.+. ....|++++.||++.|-+.. .+......+++|+.|. ++.|.. .+.+ -..+++|++|.++.|.
T Consensus 130 n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN-ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 130 NYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN-LSSNRLSNFISSNTTLLLSHLKQLVLNSCG 208 (505)
T ss_pred CccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc-cccccccCCccccchhhhhhhheEEeccCC
Confidence 344444443 45677888888888554332 2334456778888888 777765 2211 2347788888888885
Q ss_pred CccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCC-chhhhcCCCCceEEeccCC
Q 036414 75 SHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDP-MPTLEKLPHLEVLKLKQNS 152 (252)
Q Consensus 75 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~ 152 (252)
.....+-..+..+|+|+.|++..|+.+.. .. ...-+ ..|+.|+|++|++.... ....+.++.|..|+++.++
T Consensus 209 -ls~k~V~~~~~~fPsl~~L~L~~N~~~~~----~~~~~~i~-~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 209 -LSWKDVQWILLTFPSLEVLYLEANEIILI----KATSTKIL-QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred -CCHHHHHHHHHhCCcHHHhhhhcccccce----ecchhhhh-hHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 12333444556778888888888543311 01 11223 67888999988765333 3566888999999998888
Q ss_pred ccCceeeec----CCCCCccccEEEecCCccccceec--cccccccccceeeccCCCCCCCh----HHHHhccccceeec
Q 036414 153 YFERKLACV----GCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLP----EELWRIKSLCKLEL 222 (252)
Q Consensus 153 ~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p----~~l~~l~~L~~L~l 222 (252)
+.....+.. ....+|+|++|++..|+ +.+|+. ....+++|+.|.+..+...++-. ..+...++|..|+=
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~ 361 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLND 361 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcc
Confidence 765332210 03568999999999998 766643 24556778888887776543111 12344556666655
Q ss_pred ccCCH
Q 036414 223 HWPQP 227 (252)
Q Consensus 223 ~~~~~ 227 (252)
.+|.+
T Consensus 362 ~di~p 366 (505)
T KOG3207|consen 362 VDISP 366 (505)
T ss_pred cccCh
Confidence 55543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.1e-10 Score=85.78 Aligned_cols=129 Identities=26% Similarity=0.289 Sum_probs=46.1
Q ss_pred CCCCccEEEeeccCCccccchhHhhh-ccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhc
Q 036414 61 RLPTVQTLRISGDLSHYHSGVSKSLC-ELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEK 139 (252)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~ 139 (252)
+...+++|+|.++. ...+ +.+. .+.+|+.|++++ +.+.. ++.+..+ +.|+.|++++|.++.........
T Consensus 17 n~~~~~~L~L~~n~---I~~I-e~L~~~l~~L~~L~Ls~-N~I~~----l~~l~~L-~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ---ISTI-ENLGATLDKLEVLDLSN-NQITK----LEGLPGL-PRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TT-S--S------TT-----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccc---cccc-cchhhhhcCCCEEECCC-CCCcc----ccCccCh-hhhhhcccCCCCCCccccchHHh
Confidence 34456777777773 2322 2333 456777777777 55544 5556666 88888888888887433322246
Q ss_pred CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee----ccccccccccceeeccC
Q 036414 140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT----MGAGAMPKLESLILNPC 201 (252)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~ 201 (252)
+++|++|.+++|.+....-... ...+|+|+.|++.+|+ +..-+ ..+..+|+|+.|+-...
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCcCCEEECcCCcCCChHHhHH-HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 7888888888887755333333 5678888888888888 55321 22456788888876543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=1.4e-11 Score=104.57 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=108.9
Q ss_pred cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEee
Q 036414 20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLA 97 (252)
Q Consensus 20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (252)
...|++.|.+ .++|..++.+..|+.+. ++.+.+ +|..++.+..|+.++++.| ....+|..++.|+ |+.|-++
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~li-Ly~n~~r~ip~~i~~L~~lt~l~ls~N---qlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLI-LYHNCIRTIPEAICNLEALTFLDLSSN---QLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHH-HHhccceecchhhhhhhHHHHhhhccc---hhhcCChhhhcCc-ceeEEEe
Confidence 3455553333 35666666666666666 555554 6767777777777777777 5666777777776 7777666
Q ss_pred eccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecC
Q 036414 98 NQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS 176 (252)
Q Consensus 98 ~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 176 (252)
+ +++.. +| .++.. ..|..+|.+.|.+. ..|.-++.+.+|+.|++..|++.. ++.+ .+.+| |..||+++
T Consensus 152 N-Nkl~~----lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~E-l~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 152 N-NKLTS----LPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEE-LCSLP-LIRLDFSC 220 (722)
T ss_pred c-Ccccc----CCcccccc-hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHH-HhCCc-eeeeeccc
Confidence 6 55544 56 66655 77777777777665 566666777777777777666643 3323 34333 77777777
Q ss_pred CccccceeccccccccccceeeccCCCC
Q 036414 177 MLWLEEWTMGAGAMPKLESLILNPCAYL 204 (252)
Q Consensus 177 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 204 (252)
|+ +..+|..+..+..|++|-+.+|+..
T Consensus 221 Nk-is~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 221 NK-ISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred Cc-eeecchhhhhhhhheeeeeccCCCC
Confidence 77 7777777777777777777777654
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.93 E-value=4e-11 Score=97.78 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCCcccc-chHHHhhccccEEEecCCCCCCCCCc-ccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
.|.|+.| |+++..+..|..|-+.+++....+|. .|++|..++.|. ++-+++ ..+.+..++++..|.+.++ .
T Consensus 100 ~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl-lNan~i~Cir~~al~dL~~l~lLslyDn---~ 175 (498)
T KOG4237|consen 100 KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL-LNANHINCIRQDALRDLPSLSLLSLYDN---K 175 (498)
T ss_pred ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh-cChhhhcchhHHHHHHhhhcchhcccch---h
Confidence 5778888 77899999999988877555555554 578899999998 776665 4444788999999999988 4
Q ss_pred ccchhH-hhhccCCCCeEEeeec
Q 036414 78 HSGVSK-SLCELHKLECLKLANQ 99 (252)
Q Consensus 78 ~~~~~~-~l~~l~~L~~L~l~~~ 99 (252)
...++. .+..+.+++.+.+..+
T Consensus 176 ~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 176 IQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhhccccccchhccchHhhhcC
Confidence 555554 5667777777777663
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3e-10 Score=93.78 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=37.7
Q ss_pred CCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--ecc-----ccccccccceeeccCCCCCCChH--HH
Q 036414 141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMG-----AGAMPKLESLILNPCAYLRKLPE--EL 211 (252)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~-----~~~l~~L~~L~l~~~~~~~~~p~--~l 211 (252)
..|++|++++|.+........ .+.+|.|..|.++.+. +.++ +.. ...+++|+.|.+..|+.. .|+. .+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~-~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l 322 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYK-VGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHL 322 (505)
T ss_pred hHHhhccccCCcccccccccc-cccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccc-cccccchh
Confidence 345555555555433222222 4555555555555555 4433 111 123556666666665542 2332 34
Q ss_pred Hhccccceeeccc
Q 036414 212 WRIKSLCKLELHW 224 (252)
Q Consensus 212 ~~l~~L~~L~l~~ 224 (252)
..+++|+.|.+..
T Consensus 323 ~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 323 RTLENLKHLRITL 335 (505)
T ss_pred hccchhhhhhccc
Confidence 4455555555443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=3.1e-09 Score=90.68 Aligned_cols=180 Identities=23% Similarity=0.299 Sum_probs=119.5
Q ss_pred chHHHhhccccEEEecCCCCCCCCCcccCCCC-CCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhh
Q 036414 10 SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLK-NLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLC 86 (252)
Q Consensus 10 p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (252)
+..+..++.++.|++.++. ...+++....+. +|+.|+ ++.+.. ++..++.+++|+.|+++.| ....++....
T Consensus 109 ~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~-l~~N~i~~l~~~~~~l~~L~~L~l~~N---~l~~l~~~~~ 183 (394)
T COG4886 109 ISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELD-LSDNKIESLPSPLRNLPNLKNLDLSFN---DLSDLPKLLS 183 (394)
T ss_pred chhhhcccceeEEecCCcc-cccCccccccchhhccccc-ccccchhhhhhhhhccccccccccCCc---hhhhhhhhhh
Confidence 4445556677778777444 345666566664 788888 777776 4456777888888888887 4566666655
Q ss_pred ccCCCCeEEeeeccchhHHHHhhccc-cCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414 87 ELHKLECLKLANQGKMWQITRMILSE-YKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165 (252)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~l~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (252)
..++|+.+++++ +.+.. +|.. ... ..|+.+.+.++... ..+..+..+.++..+.+..+..... ... .+.
T Consensus 184 ~~~~L~~L~ls~-N~i~~----l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~--~~~-~~~ 253 (394)
T COG4886 184 NLSNLNNLDLSG-NKISD----LPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL--PES-IGN 253 (394)
T ss_pred hhhhhhheeccC-Ccccc----Cchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec--cch-hcc
Confidence 777788888877 55555 5532 333 55788877777433 3555566677777777665555331 222 556
Q ss_pred CccccEEEecCCccccceeccccccccccceeeccCCCCCC
Q 036414 166 FPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRK 206 (252)
Q Consensus 166 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~ 206 (252)
++++++|++++|. ++.++. .+.+.+++.|+++++.....
T Consensus 254 l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 254 LSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccceecccccc-cccccc-ccccCccCEEeccCcccccc
Confidence 7778888888888 777766 67777888888888765543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=2.9e-10 Score=96.82 Aligned_cols=159 Identities=20% Similarity=0.252 Sum_probs=111.8
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV 81 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (252)
|.+..+|.+++++..|+++|++.|.+ ..+|..++.|+ |+.|- +..++. +|++++...+|..|+.+.| ....+
T Consensus 108 n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli-~sNNkl~~lp~~ig~~~tl~~ld~s~n---ei~sl 181 (722)
T KOG0532|consen 108 NCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLI-VSNNKLTSLPEEIGLLPTLAHLDVSKN---EIQSL 181 (722)
T ss_pred ccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEE-EecCccccCCcccccchhHHHhhhhhh---hhhhc
Confidence 56677788888888888888885544 35777777777 77777 666665 7777887778888888887 56677
Q ss_pred hHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee-
Q 036414 82 SKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA- 159 (252)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 159 (252)
|..++.+.+|+.+.+.. +.+.. +| .+..+ .|..||++.|++. ..|..|..+..|++|-|..|.+......
T Consensus 182 psql~~l~slr~l~vrR-n~l~~----lp~El~~L--pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRR-NHLED----LPEELCSL--PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred hHHhhhHHHHHHHHHhh-hhhhh----CCHHHhCC--ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 77888888888888877 55655 66 56554 6778888888777 6777788888888888876665442221
Q ss_pred ecCCCCCccccEEEecCC
Q 036414 160 CVGCSSFPQLKILHLKSM 177 (252)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~ 177 (252)
+. -+...-.++|+..-|
T Consensus 254 C~-kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 254 CE-KGKVHIFKYLSTQAC 270 (722)
T ss_pred Hh-ccceeeeeeecchhc
Confidence 11 334445566666555
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=7.3e-10 Score=87.81 Aligned_cols=128 Identities=27% Similarity=0.288 Sum_probs=91.1
Q ss_pred CCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414 62 LPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLP 141 (252)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 141 (252)
++.|++++++.| ....+-++..-.|.++.|+++. +.+.. +..++.+ ++|+.||+++|.++ ....+-..+.
T Consensus 283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-N~i~~----v~nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQ-NRIRT----VQNLAEL-PQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred Hhhhhhcccccc---chhhhhhhhhhccceeEEeccc-cceee----ehhhhhc-ccceEeecccchhH-hhhhhHhhhc
Confidence 456788888888 5566666666678888888887 55433 2355666 88888888888665 3333334567
Q ss_pred CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--eccccccccccceeeccCCCC
Q 036414 142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYL 204 (252)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~ 204 (252)
|.++|.+++|.+.. .+|...+-+|..||+++|+ +..+ ...+|.+|.|+.+.+.+|+..
T Consensus 353 NIKtL~La~N~iE~----LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET----LSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhh----hhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 78888888777632 2346677789999999998 7654 345788999999999998864
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=4e-09 Score=97.26 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=70.6
Q ss_pred ccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchh
Q 036414 6 IDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVS 82 (252)
Q Consensus 6 l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (252)
+..++.. +..++.|++||+++|....++|..+++|-+||.|+ ++.+.. +|.+++++..|.+|++..+. ....++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~-L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~--~l~~~~ 635 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD-LSDTGISHLPSGLGNLKKLIYLNLEVTG--RLESIP 635 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc-ccCCCccccchHHHHHHhhheecccccc--cccccc
Confidence 5556554 56788888888888877788888888888888888 887777 78888888888888888775 444456
Q ss_pred HhhhccCCCCeEEeeec
Q 036414 83 KSLCELHKLECLKLANQ 99 (252)
Q Consensus 83 ~~l~~l~~L~~L~l~~~ 99 (252)
.....+++||+|.+...
T Consensus 636 ~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRS 652 (889)
T ss_pred chhhhcccccEEEeecc
Confidence 66677888888888763
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-09 Score=87.73 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHhhccccEEEecCCCCCCC----CCcccCCCCCCcEecccCC---CCC---ch-------hhcCCCCCccEEEeeccC-
Q 036414 13 IWMMQKLMHLNFGSITLPAP----PKNYSSSLKNLIFISALHP---SSC---TP-------DILSRLPTVQTLRISGDL- 74 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~~l~~---~~~---~~-------~~l~~l~~L~~L~l~~~~- 74 (252)
+.....++++++++|++... +...+...++|+... ++. ... .| +.+-.+++|++++||+|-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~-~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVN-LSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeee-hHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34556677777777776543 223344444555444 211 000 12 223345667777777665
Q ss_pred -CccccchhHhhhccCCCCeEEeee
Q 036414 75 -SHYHSGVSKSLCELHKLECLKLAN 98 (252)
Q Consensus 75 -~~~~~~~~~~l~~l~~L~~L~l~~ 98 (252)
......+-..+.++.+|++|++.+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N 129 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNN 129 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhc
Confidence 111122223345566677777766
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=3.3e-09 Score=85.39 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=60.6
Q ss_pred HHhhccccEEEecCCCCCCCCCcc----cCCCCCCcEecccCCCCCchhh----------------cCCCCCccEEEeec
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALHPSSCTPDI----------------LSRLPTVQTLRISG 72 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~~l~~~~~~~~~----------------l~~l~~L~~L~l~~ 72 (252)
+-.+++|++++++.|.+....+.. +..+..|++|. +.+|...|.. +++-+.||.+...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~-L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY-LNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh-hhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 344456666666666555433332 34455566666 5555542222 12234555555555
Q ss_pred cC--CccccchhHhhhccCCCCeEEeeeccch--hHHHHhhc-cccCCCCCCceEEeeecccCCCCc----hhhhcCCCC
Q 036414 73 DL--SHYHSGVSKSLCELHKLECLKLANQGKM--WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPM----PTLEKLPHL 143 (252)
Q Consensus 73 ~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L 143 (252)
|+ ......+...+...+.|+.+.+.. +.+ .... ++. .+... ++|+.||+++|-++...- .++..|++|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~-al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVT-ALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEec-ccccCchhH-HHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 54 112222333444455555555555 322 0000 011 22332 555555555554442221 223345555
Q ss_pred ceEEeccCCc
Q 036414 144 EVLKLKQNSY 153 (252)
Q Consensus 144 ~~L~l~~~~~ 153 (252)
+++++++|.+
T Consensus 244 ~El~l~dcll 253 (382)
T KOG1909|consen 244 RELNLGDCLL 253 (382)
T ss_pred eeeccccccc
Confidence 5555555443
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.2e-10 Score=87.04 Aligned_cols=197 Identities=18% Similarity=0.145 Sum_probs=138.2
Q ss_pred cccEEEecCCCCCC-CCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414 18 KLMHLNFGSITLPA-PPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC 93 (252)
Q Consensus 18 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (252)
.|++||++...+.. .+-.-+..+.+|+.|. +.+... +...+.+-.+|+.++++++.+.....+--.+..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lS-lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLS-LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcc-ccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 58999999433332 3444467888899888 666655 666688899999999999975454555556788999999
Q ss_pred EEeeeccchhHHHHhhc-cccCCCCCCceEEeeecc--cCCCCchhh-hcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414 94 LKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTE--LIEDPMPTL-EKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169 (252)
Q Consensus 94 L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~--~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 169 (252)
|++++|....+. +. .+.+..++|+.|+++|+. +.......+ ..+|+|.+|+++++.......... +-.|+.|
T Consensus 265 LNlsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYL 340 (419)
T ss_pred cCchHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchh
Confidence 999996554321 23 444445799999999973 333455554 679999999999876544333333 6689999
Q ss_pred cEEEecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccce
Q 036414 170 KILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCK 219 (252)
Q Consensus 170 ~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 219 (252)
++|.++.|..+. +.-..+...|+|.+|++.||-.........+.+++++.
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 999999999554 23345678899999999998643333223345565543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=1.4e-08 Score=93.65 Aligned_cols=95 Identities=23% Similarity=0.246 Sum_probs=75.0
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccc
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
..+.+||.+|+.+-+||+|+++ .+....+|.++.++..|.+|+ +..+.. .+.....+++||+|.+..........
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~-~t~I~~LP~~l~~Lk~L~~Ln-l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~ 659 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLS-DTGISHLPSGLGNLKKLIYLN-LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL 659 (889)
T ss_pred CccCcCChHHhhhhhhhccccc-CCCccccchHHHHHHhhheec-cccccccccccchhhhcccccEEEeeccccccchh
Confidence 4678999999999999999999 555558999999999999999 777664 33335559999999997764335555
Q ss_pred hhHhhhccCCCCeEEeeecc
Q 036414 81 VSKSLCELHKLECLKLANQG 100 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~ 100 (252)
....+..+.+|+.+.+....
T Consensus 660 ~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITISS 679 (889)
T ss_pred hHHhhhcccchhhheeecch
Confidence 66677888888888886633
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=1.6e-09 Score=85.92 Aligned_cols=128 Identities=21% Similarity=0.238 Sum_probs=78.8
Q ss_pred CCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCC
Q 036414 41 KNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPP 117 (252)
Q Consensus 41 ~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~ 117 (252)
+.|++++ ++.|.+ +.+.+.-.+.++.|+++.|. ... ...+..+++|+.|++++ +.+.+ +. |...+ -
T Consensus 284 q~LtelD-LS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~-v~nLa~L~~L~~LDLS~-N~Ls~----~~Gwh~KL-G 352 (490)
T KOG1259|consen 284 QELTELD-LSGNLITQIDESVKLAPKLRRLILSQNR---IRT-VQNLAELPQLQLLDLSG-NLLAE----CVGWHLKL-G 352 (490)
T ss_pred hhhhhcc-ccccchhhhhhhhhhccceeEEeccccc---eee-ehhhhhcccceEeeccc-chhHh----hhhhHhhh-c
Confidence 4466666 666655 44445556677777777664 222 22356667777777776 44443 33 44445 6
Q ss_pred CCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce
Q 036414 118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW 183 (252)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 183 (252)
|++.|.+..|.+. ....++.+-+|..|++++|++....-.-. .+++|.|+.+.+.+|+ +..+
T Consensus 353 NIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP-l~~~ 414 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP-LAGS 414 (490)
T ss_pred CEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC-cccc
Confidence 6777777777664 45556666677777777777654333323 7788888888888888 6544
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2.4e-08 Score=85.24 Aligned_cols=173 Identities=25% Similarity=0.324 Sum_probs=132.6
Q ss_pred ccCCCCCCcEecccCCCCC--chhhcCCCC-CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccc
Q 036414 36 YSSSLKNLIFISALHPSSC--TPDILSRLP-TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSE 112 (252)
Q Consensus 36 ~l~~l~~L~~L~~l~~~~~--~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~ 112 (252)
.+..++.++.|+ +..+.. ++...+... +|+.|+++++ ....++..+..+++|+.|++.. +.+.+ +|..
T Consensus 111 ~~~~~~~l~~L~-l~~n~i~~i~~~~~~~~~nL~~L~l~~N---~i~~l~~~~~~l~~L~~L~l~~-N~l~~----l~~~ 181 (394)
T COG4886 111 ELLELTNLTSLD-LDNNNITDIPPLIGLLKSNLKELDLSDN---KIESLPSPLRNLPNLKNLDLSF-NDLSD----LPKL 181 (394)
T ss_pred hhhcccceeEEe-cCCcccccCccccccchhhccccccccc---chhhhhhhhhccccccccccCC-chhhh----hhhh
Confidence 355567788888 777666 666666664 9999999999 5677777889999999999999 77766 6743
Q ss_pred c-CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccc
Q 036414 113 Y-KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMP 191 (252)
Q Consensus 113 ~-~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 191 (252)
. .. ++|+.++++++++. ..+...+....|+++.++.|.... .... ...+.++..+.+.+++ +..++...+.++
T Consensus 182 ~~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~--~~~~-~~~~~~l~~l~l~~n~-~~~~~~~~~~l~ 255 (394)
T COG4886 182 LSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE--LLSS-LSNLKNLSGLELSNNK-LEDLPESIGNLS 255 (394)
T ss_pred hhhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee--cchh-hhhcccccccccCCce-eeeccchhcccc
Confidence 3 66 99999999999988 455544567779999998885433 2223 5678888888888888 666566678888
Q ss_pred cccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 192 KLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 192 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
+++.|++++|... .++. +..+.+++.+++++.
T Consensus 256 ~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 256 NLETLDLSNNQIS-SISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccceecccccccc-cccc-ccccCccCEEeccCc
Confidence 9999999998865 4544 777889999999874
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.64 E-value=5.2e-09 Score=86.20 Aligned_cols=215 Identities=19% Similarity=0.186 Sum_probs=138.6
Q ss_pred hhccccEEEecCCCCCC--CCCcccCCCCCCcEecccCCCCC-----chhhcCCCCCccEEEeeccCCccccchhHhhhc
Q 036414 15 MMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALHPSSC-----TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCE 87 (252)
Q Consensus 15 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~~l~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 87 (252)
.|++|++|+++++.-.. .+.....++..++.+. ...+.. +...-+.+.-+.++++..|....+..+...-+.
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~-~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLS-LKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhh-hcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 46677777777655322 1223344555555554 333332 111223456677777766654455555666677
Q ss_pred cCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecc-cCCCCchhh-hcCCCCceEEeccCCccCce-eeecC
Q 036414 88 LHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTE-LIEDPMPTL-EKLPHLEVLKLKQNSYFERK-LACVG 162 (252)
Q Consensus 88 l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~-~~~~~ 162 (252)
+..|+.+..+++..+.+ .+ .++.-+++|+.+-+.+|+ +++.....+ .+++.|+.+++..+....+. +...
T Consensus 293 c~~lq~l~~s~~t~~~d----~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl- 367 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITD----EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL- 367 (483)
T ss_pred hhHhhhhcccCCCCCch----HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-
Confidence 88899999988776644 33 445445899999999985 554445445 46889999999877654332 3333
Q ss_pred CCCCccccEEEecCCccccce-----eccccccccccceeeccCCCCC-CChHHHHhccccceeecccCCHHHHHHHHh
Q 036414 163 CSSFPQLKILHLKSMLWLEEW-----TMGAGAMPKLESLILNPCAYLR-KLPEELWRIKSLCKLELHWPQPELRQRLRA 235 (252)
Q Consensus 163 ~~~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 235 (252)
..++|.|+.+.++.|..+++- .....+...++.+.+++|+.+. ..-..+..+++|+.+++.+|..-..+.++.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 678999999999988755532 2333566789999999998653 334467788999999999887544444444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.5e-07 Score=56.98 Aligned_cols=59 Identities=34% Similarity=0.454 Sum_probs=28.8
Q ss_pred CCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414 118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML 178 (252)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (252)
+|++|++++|.+....+.++..+++|++|++++|.+..... .. +.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~-f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DA-FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TT-TTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HH-HcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555554433211 12 4455555555555544
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=5.3e-07 Score=81.22 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=60.4
Q ss_pred ccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCC
Q 036414 65 VQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPH 142 (252)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~ 142 (252)
++.|+|+++. ....+|..+..+++|+.|++++ +.+ +. +| .+..+ ++|+.|++++|.+....|..++.+++
T Consensus 420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~Ls~-N~l~g~----iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINLSG-NSIRGN----IPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCC--ccccCCHHHhCCCCCCEEECCC-CcccCc----CChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCC
Confidence 5556666654 4455666666666666666666 333 34 55 55665 66666666666666666666666666
Q ss_pred CceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414 143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML 178 (252)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (252)
|+.|++++|.+.+..+... .....++..+++.+|+
T Consensus 492 L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCChHH-hhccccCceEEecCCc
Confidence 6666666666554332211 1112345556666555
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=7.1e-07 Score=80.40 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=82.3
Q ss_pred CcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCC
Q 036414 43 LIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPS 118 (252)
Q Consensus 43 L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~ 118 (252)
++.|+ ++.+.. .|..++.+++|+.|+|++|. ....+|..+..+++|+.|++++|.-.+. +| .+..+ ++
T Consensus 420 v~~L~-L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--l~g~iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~~L-~~ 491 (623)
T PLN03150 420 IDGLG-LDNQGLRGFIPNDISKLRHLQSINLSGNS--IRGNIPPSLGSITSLEVLDLSYNSFNGS----IPESLGQL-TS 491 (623)
T ss_pred EEEEE-CCCCCccccCCHHHhCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEEECCCCCCCCC----CchHHhcC-CC
Confidence 66777 777665 77789999999999999997 6678888899999999999998433355 77 78888 99
Q ss_pred CceEEeeecccCCCCchhhhcC-CCCceEEeccCC
Q 036414 119 LTQLSLSNTELIEDPMPTLEKL-PHLEVLKLKQNS 152 (252)
Q Consensus 119 L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 152 (252)
|+.|++++|.+....|..++.. .++..+++.+|.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999988888877653 467788887664
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=4.6e-07 Score=55.77 Aligned_cols=57 Identities=39% Similarity=0.549 Sum_probs=35.6
Q ss_pred CCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC
Q 036414 90 KLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS 152 (252)
Q Consensus 90 ~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 152 (252)
+|++|++.+ +.+.. +| .+..+ ++|++|++++|.+....+.++..+++|++|++++|.
T Consensus 2 ~L~~L~l~~-n~l~~----i~~~~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSN-NKLTE----IPPDSFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETS-STESE----ECTTTTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCC-CCCCc----cCHHHHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666665 34444 44 44555 677777777776665555666777777777776654
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=3.4e-07 Score=72.80 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=58.5
Q ss_pred cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--ccccccccccceeeccCCCCCCChH------H
Q 036414 139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLPE------E 210 (252)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~------~ 210 (252)
.+|++..+.+..|.+....--.. +..+|.+..|.+..++ +.+|. .....|++|..|++.+++..+.+-. -
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll 274 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL 274 (418)
T ss_pred hcccchheeeecCcccchhhccc-CCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence 46788888887776654333322 5678888888888888 77762 3467789999999999887664432 2
Q ss_pred HHhccccceeecccC
Q 036414 211 LWRIKSLCKLELHWP 225 (252)
Q Consensus 211 l~~l~~L~~L~l~~~ 225 (252)
+..+++++.|+=+..
T Consensus 275 IaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 275 IARLTKVQVLNGSKI 289 (418)
T ss_pred EeeccceEEecCccc
Confidence 456777777765543
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=3e-07 Score=79.02 Aligned_cols=128 Identities=27% Similarity=0.239 Sum_probs=84.1
Q ss_pred hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhh-cCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414 15 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDI-LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE 92 (252)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (252)
.+..++.+++++|.+.. .-..+..+++|..|+ +..+.+ -... +..+++|++|++++|. ...+. .+..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~-l~~n~i~~i~~~l~~~~~L~~L~ls~N~---I~~i~-~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALD-LYDNKIEKIENLLSSLVNLQVLDLSFNK---ITKLE-GLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeee-ccccchhhcccchhhhhcchheeccccc---ccccc-chhhccchh
Confidence 34555556666444332 333467777888888 777776 4444 6778888888888884 33332 345566688
Q ss_pred eEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCc-hhhhcCCCCceEEeccCCccC
Q 036414 93 CLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPM-PTLEKLPHLEVLKLKQNSYFE 155 (252)
Q Consensus 93 ~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 155 (252)
.|++.+ +.+.. +..+..+ .+|+.+++++|.+..... . +..+.+++.+.+.+|.+..
T Consensus 144 ~L~l~~-N~i~~----~~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 144 ELNLSG-NLISD----ISGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hheecc-Ccchh----ccCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 888888 66655 5555556 888888888887764333 2 4667778888887666543
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.2e-06 Score=79.12 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=72.3
Q ss_pred CCccEEEeeccCCccccchhHhhhc-cCCCCeEEeeeccch--hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh
Q 036414 63 PTVQTLRISGDLSHYHSGVSKSLCE-LHKLECLKLANQGKM--WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE 138 (252)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 138 (252)
.+|+.|++++.. ......+..++. +|+|+.|.+.+ ..+ .+ +. ...++ |+|..||+++++++. ....+
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~d----F~~lc~sF-pNL~sLDIS~TnI~n--l~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISG-RQFDNDD----FSQLCASF-PNLRSLDISGTNISN--LSGIS 192 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecC-ceecchh----HHHHhhcc-CccceeecCCCCccC--cHHHh
Confidence 567777776653 223334444433 47777777766 222 22 22 34455 777777777777662 35566
Q ss_pred cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce------eccccccccccceeeccCCCCC
Q 036414 139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW------TMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
++.+|+.|.+.+-.+..-..... .-++++|+.||+|.......- -.-...+|.|+.|+.++....+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77777777775444432111112 445777777777765532211 0112346677777777655443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=1.9e-07 Score=82.27 Aligned_cols=108 Identities=25% Similarity=0.261 Sum_probs=75.1
Q ss_pred cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccc
Q 036414 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAM 190 (252)
Q Consensus 111 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 190 (252)
.+.-+ +.++.|+++.|++... ..+..+++|++|+++.|+.....- +. ..++. |+.|.+++|. ++++.. +.++
T Consensus 182 SLqll-~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~-l~-~~gc~-L~~L~lrnN~-l~tL~g-ie~L 253 (1096)
T KOG1859|consen 182 SLQLL-PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ-LS-MVGCK-LQLLNLRNNA-LTTLRG-IENL 253 (1096)
T ss_pred HHHHH-HHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc-cc-hhhhh-heeeeecccH-HHhhhh-HHhh
Confidence 33334 7788889988888743 377888999999998887654211 12 33444 8888888888 777654 5678
Q ss_pred ccccceeeccCCCCCCC-hHHHHhccccceeecccCC
Q 036414 191 PKLESLILNPCAYLRKL-PEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 191 ~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~ 226 (252)
.+|+.|+++.|-+.+.- -.-++.+..|++|.+.|+|
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 88999999887544311 1235667888888888876
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=5.9e-07 Score=77.21 Aligned_cols=113 Identities=26% Similarity=0.294 Sum_probs=66.5
Q ss_pred ccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHh
Q 036414 6 IDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKS 84 (252)
Q Consensus 6 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (252)
|+.+-..+..+.+|+.|++..|.+. .+...+..+++|++|+ ++.+.+ ....+..++.|+.|++++|. ...+. .
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~-ls~N~I~~i~~l~~l~~L~~L~l~~N~---i~~~~-~ 157 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLD-LSFNKITKLEGLSTLTLLKELNLSGNL---ISDIS-G 157 (414)
T ss_pred hhhhhcccccccceeeeeccccchh-hcccchhhhhcchhee-ccccccccccchhhccchhhheeccCc---chhcc-C
Confidence 3333333566677777777744433 3333366777777777 777776 55566667777777777774 22222 2
Q ss_pred hhccCCCCeEEeeeccchhHHHHhhcc--ccCCCCCCceEEeeecccC
Q 036414 85 LCELHKLECLKLANQGKMWQITRMILS--EYKFPPSLTQLSLSNTELI 130 (252)
Q Consensus 85 l~~l~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~~L~~l~l~~~~~~ 130 (252)
+..+++|+.+++.+ +.+.. +.. ...+ .+++.+.+.++.+.
T Consensus 158 ~~~l~~L~~l~l~~-n~i~~----ie~~~~~~~-~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 158 LESLKSLKLLDLSY-NRIVD----IENDELSEL-ISLEELDLGGNSIR 199 (414)
T ss_pred CccchhhhcccCCc-chhhh----hhhhhhhhc-cchHHHhccCCchh
Confidence 33366777777776 44433 332 3444 66666666666554
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.8e-05 Score=59.60 Aligned_cols=61 Identities=30% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML 178 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (252)
+.|..|.+.+|+++...|..-..+++|..|.+.+|++........ ...+|.|++|.+-+|+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 444444444444444444333334444444444444322111111 3344444444444444
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=5.2e-06 Score=75.19 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=90.9
Q ss_pred CCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCC-CchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414 89 HKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIED-PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165 (252)
Q Consensus 89 ~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (252)
.+|++|++.+...+ .+ -| .++.+.|+|+.|.+.+-.+... ......++|+|..|++++.++... .|.+.
T Consensus 122 ~nL~~LdI~G~~~~s~~----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISR 193 (699)
T ss_pred HhhhhcCccccchhhcc----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhc
Confidence 68899999884433 11 23 4555569999999888665433 334457889999999988877542 34778
Q ss_pred CccccEEEecCCccccce--eccccccccccceeeccCCCCCC--ChH----HHHhccccceeecccC--CHHHHHHHHh
Q 036414 166 FPQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRK--LPE----ELWRIKSLCKLELHWP--QPELRQRLRA 235 (252)
Q Consensus 166 ~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~--~p~----~l~~l~~L~~L~l~~~--~~~~~~~~~~ 235 (252)
+++|+.|.+.+-. +... -..+-.+++|+.||++.-..... +.. .-..+|+|+.||.++- .+++.+.+..
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 8889988887766 4432 12345688999999988654332 121 1234788888888853 4566655544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=1.2e-05 Score=63.45 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=87.4
Q ss_pred HHHhhccccEEEecCCCCCCCC----CcccCCCCCCcEecccCCC---CC----------chhhcCCCCCccEEEeeccC
Q 036414 12 DIWMMQKLMHLNFGSITLPAPP----KNYSSSLKNLIFISALHPS---SC----------TPDILSRLPTVQTLRISGDL 74 (252)
Q Consensus 12 ~i~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~~l~~~---~~----------~~~~l~~l~~L~~L~l~~~~ 74 (252)
.+..+..++.+++++|++.... ...+.+-.+|+... ++.- .. +.+.+-+|+.|++.+|+.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvn-fsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVN-FSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEee-hhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3456778899999999987643 33344445566554 2210 00 33446678999999999887
Q ss_pred CccccchhHh----hhccCCCCeEEeeeccchhHH--HH----h--h---ccccCCCCCCceEEeeecccCCCCchh---
Q 036414 75 SHYHSGVSKS----LCELHKLECLKLANQGKMWQI--TR----M--I---LSEYKFPPSLTQLSLSNTELIEDPMPT--- 136 (252)
Q Consensus 75 ~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~--~~----l--~---~~~~~~~~~L~~l~l~~~~~~~~~~~~--- 136 (252)
+....|+. +.+-+.|.+|.+.+ +.++.+ .+ | + ...++. |.|+.+....|++.......
T Consensus 104 --fg~~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 104 --FGSEFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred --cCcccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhccCcHHHHHH
Confidence 55555543 45567899999988 433110 00 0 0 022334 66666666666554322211
Q ss_pred -hhcCCCCceEEeccCCccCc---eeeecCCCCCccccEEEecCCc
Q 036414 137 -LEKLPHLEVLKLKQNSYFER---KLACVGCSSFPQLKILHLKSML 178 (252)
Q Consensus 137 -l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~ 178 (252)
+..-.+|+++.+.+|.+... ...+.|...+.+|+.|++.+|-
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 12224566666655554322 1112223345556666655554
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.2e-05 Score=44.64 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=23.5
Q ss_pred ccccEEEecCCccccceeccccccccccceeeccCCCC
Q 036414 167 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL 204 (252)
Q Consensus 167 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 204 (252)
++|++|++++|+ +++++..++.+++|+.|++++|+..
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCC
Confidence 456777777776 6666665667777777777776543
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00022 Score=60.36 Aligned_cols=135 Identities=18% Similarity=0.130 Sum_probs=70.4
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCC-CCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhcc
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLK-NLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCEL 88 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 88 (252)
+..+.++++|++++|. ...+| .++ +|++|. +..+.. .|..+ .++|++|++++|. ....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP----~LP~sLtsL~-Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs--~L~sLP~----- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLP----VLPNELTEIT-IENCNNLTTLPGSI--PEGLEKLTVCHCP--EISGLPE----- 112 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccC----CCCCCCcEEE-ccCCCCcccCCchh--hhhhhheEccCcc--ccccccc-----
Confidence 4557888899998663 33445 233 588888 665443 34333 2578888888874 3334443
Q ss_pred CCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccC-CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCc
Q 036414 89 HKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELI-EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFP 167 (252)
Q Consensus 89 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 167 (252)
+|+.|++.. +.. ..+..+|++|+.|.+.+++.. ...... .--++|+.|.+++|.... .+ ..-..
T Consensus 113 -sLe~L~L~~-n~~-------~~L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~--LP---~~LP~ 177 (426)
T PRK15386 113 -SVRSLEIKG-SAT-------DSIKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNII--LP---EKLPE 177 (426)
T ss_pred -ccceEEeCC-CCC-------cccccCcchHhheecccccccccccccc-ccCCcccEEEecCCCccc--Cc---ccccc
Confidence 466666654 221 133445566676666432211 000000 012467777776655322 11 11123
Q ss_pred cccEEEecCC
Q 036414 168 QLKILHLKSM 177 (252)
Q Consensus 168 ~L~~L~l~~~ 177 (252)
+|+.|.++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 6777776654
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.76 E-value=1.9e-06 Score=71.42 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=55.6
Q ss_pred CCcEecccCCCCC-----chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCC
Q 036414 42 NLIFISALHPSSC-----TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFP 116 (252)
Q Consensus 42 ~L~~L~~l~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 116 (252)
.|+.|. ++.+.- .-.....++++++|.+.+|.......+...-..+++|+++++..|..+... .+..++.-+
T Consensus 139 ~lk~LS-lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~--~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELS-LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV--SLKYLAEGC 215 (483)
T ss_pred cccccc-ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH--HHHHHHHhh
Confidence 456666 555443 112234577788887777753333444444456777888887775554320 011233334
Q ss_pred CCCceEEeeec-ccCCCCchh-hhcCCCCceEEecc
Q 036414 117 PSLTQLSLSNT-ELIEDPMPT-LEKLPHLEVLKLKQ 150 (252)
Q Consensus 117 ~~L~~l~l~~~-~~~~~~~~~-l~~~~~L~~L~l~~ 150 (252)
++|+++++++| ++.+..... ...+.+++++...+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 77788877776 333322222 23344455554443
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=7.1e-07 Score=78.80 Aligned_cols=125 Identities=25% Similarity=0.232 Sum_probs=74.4
Q ss_pred ccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCc
Q 036414 65 VQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE 144 (252)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 144 (252)
|...+.++| ....+-.++.-++.+++|++++ |.+.. ...+..+ +.|+.|||+.|.+...+--....| +|.
T Consensus 166 L~~a~fsyN---~L~~mD~SLqll~ale~LnLsh-Nk~~~----v~~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 166 LATASFSYN---RLVLMDESLQLLPALESLNLSH-NKFTK----VDNLRRL-PKLKHLDLSYNCLRHVPQLSMVGC-KLQ 235 (1096)
T ss_pred Hhhhhcchh---hHHhHHHHHHHHHHhhhhccch-hhhhh----hHHHHhc-ccccccccccchhccccccchhhh-hhe
Confidence 444444444 2333344555567788888887 55543 3345555 788888888887762221112222 388
Q ss_pred eEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--ccccccccccceeeccCCCC
Q 036414 145 VLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYL 204 (252)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~ 204 (252)
.|++++|..+.- -|..++.+|+.||+++|- +.+.. .....+..|..|.+.||+..
T Consensus 236 ~L~lrnN~l~tL----~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL----RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh----hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888877665431 124577888888888877 55331 11456677888888888753
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=2.6e-05 Score=62.29 Aligned_cols=82 Identities=20% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCCCceEEeeecccC-CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec------ccc
Q 036414 116 PPSLTQLSLSNTELI-EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM------GAG 188 (252)
Q Consensus 116 ~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~------~~~ 188 (252)
.+++..+.+..|.+. ...-..+...|.+-.|+++.+.+....-... ..+||.|..|.+..++-++.+.. .++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 388888888777654 2333445567777788888777654222234 67899999999998884333322 235
Q ss_pred ccccccceee
Q 036414 189 AMPKLESLIL 198 (252)
Q Consensus 189 ~l~~L~~L~l 198 (252)
.+++++.|.=
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 5667776653
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=5.8e-05 Score=57.00 Aligned_cols=107 Identities=24% Similarity=0.279 Sum_probs=80.9
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--cccccccccc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLE 194 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~ 194 (252)
.+...+|+++|.+. ....+..++.|.+|.+..|+++...... ..-+|+|+.|.+.+|. +.++. .....||+|+
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNS-IQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccch--hhhccccceEEecCcc-hhhhhhcchhccCCccc
Confidence 46678888888765 3344567889999999989887755443 4568899999999988 66552 2367899999
Q ss_pred ceeeccCCCCCC---ChHHHHhccccceeecccCCHH
Q 036414 195 SLILNPCAYLRK---LPEELWRIKSLCKLELHWPQPE 228 (252)
Q Consensus 195 ~L~l~~~~~~~~---~p~~l~~l~~L~~L~l~~~~~~ 228 (252)
.|.+-+|+.... --..+..+|+|+.||+.++..+
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 999999986542 2224678899999999988743
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00019 Score=60.69 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=75.3
Q ss_pred cCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccC
Q 036414 37 SSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYK 114 (252)
Q Consensus 37 l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 114 (252)
+..+.++++|+ ++.+.+ +| .+ -++|++|.+++|. ....+|..+ ..+|+.|++.+|..+. .
T Consensus 48 ~~~~~~l~~L~-Is~c~L~sLP-~L--P~sLtsL~Lsnc~--nLtsLP~~L--P~nLe~L~Ls~Cs~L~----------s 109 (426)
T PRK15386 48 IEEARASGRLY-IKDCDIESLP-VL--PNELTEITIENCN--NLTTLPGSI--PEGLEKLTVCHCPEIS----------G 109 (426)
T ss_pred HHHhcCCCEEE-eCCCCCcccC-CC--CCCCcEEEccCCC--CcccCCchh--hhhhhheEccCccccc----------c
Confidence 34557777777 776654 33 21 2358888887775 445555443 2467788887743332 2
Q ss_pred CCCCCceEEeeecccCCCCchhhhcC-CCCceEEeccCCccCceeeecCCCCC-ccccEEEecCCccccceecccccccc
Q 036414 115 FPPSLTQLSLSNTELIEDPMPTLEKL-PHLEVLKLKQNSYFERKLACVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPK 192 (252)
Q Consensus 115 ~~~~L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~ 192 (252)
+|++|+.|++..+.... +..+ ++|+.|.+..+..... .. . ...+ ++|++|.+++|.. ...|..+ -.+
T Consensus 110 LP~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~-~~-l-p~~LPsSLk~L~Is~c~~-i~LP~~L--P~S 178 (426)
T PRK15386 110 LPESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQ-AR-I-DNLISPSLKTLSLTGCSN-IILPEKL--PES 178 (426)
T ss_pred cccccceEEeCCCCCcc-----cccCcchHhheeccccccccc-cc-c-ccccCCcccEEEecCCCc-ccCcccc--ccc
Confidence 34677777776543321 1222 3567777743321110 11 0 1123 4799999988883 3333222 247
Q ss_pred ccceeeccCC
Q 036414 193 LESLILNPCA 202 (252)
Q Consensus 193 L~~L~l~~~~ 202 (252)
|+.|.++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 8888887654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=8.6e-06 Score=57.71 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=42.9
Q ss_pred hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCC
Q 036414 85 LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGC 163 (252)
Q Consensus 85 l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 163 (252)
+.+...|...++++ +.+.. +| .+...++..+.+++..|.+. ..|..+..++.|+.++++.|.+....-.+
T Consensus 49 l~~~~el~~i~ls~-N~fk~----fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi--- 119 (177)
T KOG4579|consen 49 LSKGYELTKISLSD-NGFKK----FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVI--- 119 (177)
T ss_pred HhCCceEEEEeccc-chhhh----CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHH---
Confidence 33444455555655 44444 44 33222256666666666665 34444666666666666666554322221
Q ss_pred CCCccccEEEecCCc
Q 036414 164 SSFPQLKILHLKSML 178 (252)
Q Consensus 164 ~~~~~L~~L~l~~~~ 178 (252)
..+.++-.|+..++.
T Consensus 120 ~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA 134 (177)
T ss_pred HHHHhHHHhcCCCCc
Confidence 124444455544444
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.00023 Score=40.41 Aligned_cols=35 Identities=43% Similarity=0.680 Sum_probs=15.8
Q ss_pred CCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414 118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153 (252)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 153 (252)
+|++|++++|+++ ..+..++.+++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 4455555555554 2233344555555555554444
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=1.7e-05 Score=62.81 Aligned_cols=112 Identities=25% Similarity=0.229 Sum_probs=80.0
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--cccccccccc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLE 194 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~ 194 (252)
.+.++|+.-+|.++ .......++.|+.|.|+-|.++... . +..|++|++|.|..|. +.++. .-+.++|+|+
T Consensus 19 ~~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIssL~---p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISSLA---P-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCCCcc--HHHHHHhcccceeEEeeccccccch---h-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 56677777777775 4455567888888888888775522 2 4578888888888877 66542 2357789999
Q ss_pred ceeeccCCCCCCChH-----HHHhccccceeecccCCH-HHHHHHHh
Q 036414 195 SLILNPCAYLRKLPE-----ELWRIKSLCKLELHWPQP-ELRQRLRA 235 (252)
Q Consensus 195 ~L~l~~~~~~~~~p~-----~l~~l~~L~~L~l~~~~~-~~~~~~~~ 235 (252)
.|.+..|++.+.-+. .++.+|+|+.|+=....+ +..+.++.
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence 999999887664432 578899999998776664 55555666
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=0.00013 Score=57.77 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=18.3
Q ss_pred HHhhccccEEEecCCCCCCCCCcc----cCCCCCCcEecccCCCCC
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALHPSSC 54 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~~l~~~~~ 54 (252)
+-+|++|+..+++.|.+....|.. +.+-+.|.+|. +++|..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~-l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLK-LNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEE-eecCCC
Confidence 344555555555555444433322 23334455554 444443
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.27 E-value=5.4e-05 Score=66.13 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=77.0
Q ss_pred CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeec-cch---hHHHHhhccccCCCCCCceEEeeecc-cCCCCch
Q 036414 61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQ-GKM---WQITRMILSEYKFPPSLTQLSLSNTE-LIEDPMP 135 (252)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~---~~~~~l~~~~~~~~~~L~~l~l~~~~-~~~~~~~ 135 (252)
.+++|+.+.+..+.......+......+++|+.|++.++ ... ... ...+...+++|+.+++..+. +++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL---LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH---hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 367777777777753232335556667788888887752 111 110 11222233777888887776 6655555
Q ss_pred hhhc-CCCCceEEeccCC-ccCceeeecCCCCCccccEEEecCCccccc--eeccccccccccceee
Q 036414 136 TLEK-LPHLEVLKLKQNS-YFERKLACVGCSSFPQLKILHLKSMLWLEE--WTMGAGAMPKLESLIL 198 (252)
Q Consensus 136 ~l~~-~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l 198 (252)
.++. +++|++|.+..|. +++..+... ...++.|++|++++|..+.+ +......+++++.+.+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5543 7788888865555 344444433 55677788888887775532 2222334555444443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=8.7e-05 Score=58.14 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=15.3
Q ss_pred CccccEEEecCCcccccee--ccccccccccceeeccCC
Q 036414 166 FPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCA 202 (252)
Q Consensus 166 ~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~ 202 (252)
+|+|+++.+++|+ ++.+. .....+++|..|++.+|.
T Consensus 90 ~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 3555555555554 33211 112334444555555554
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.09 E-value=6e-05 Score=65.82 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=15.9
Q ss_pred ccceeeccCCCCC-CChHHHHh-ccccceeecccCC
Q 036414 193 LESLILNPCAYLR-KLPEELWR-IKSLCKLELHWPQ 226 (252)
Q Consensus 193 L~~L~l~~~~~~~-~~p~~l~~-l~~L~~L~l~~~~ 226 (252)
++.|.+..|.... ..-..... +.+++.+++.+++
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 4666666665322 11111111 5556666666654
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=6.1e-05 Score=53.48 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=39.3
Q ss_pred cCCCCC--chhhc-CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEe
Q 036414 49 LHPSSC--TPDIL-SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSL 124 (252)
Q Consensus 49 l~~~~~--~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l 124 (252)
++.|.+ +|+.+ .+.+.++.|+++.| ....+|..+..++.|+.+++.. +.+.. .| .+..+ .++.+|+.
T Consensus 60 ls~N~fk~fp~kft~kf~t~t~lNl~~n---eisdvPeE~Aam~aLr~lNl~~-N~l~~----~p~vi~~L-~~l~~Lds 130 (177)
T KOG4579|consen 60 LSDNGFKKFPKKFTIKFPTATTLNLANN---EISDVPEELAAMPALRSLNLRF-NPLNA----EPRVIAPL-IKLDMLDS 130 (177)
T ss_pred cccchhhhCCHHHhhccchhhhhhcchh---hhhhchHHHhhhHHhhhccccc-Ccccc----chHHHHHH-HhHHHhcC
Confidence 444444 34443 23446666666666 4555666666666666666666 43322 33 33444 55566666
Q ss_pred eecccC
Q 036414 125 SNTELI 130 (252)
Q Consensus 125 ~~~~~~ 130 (252)
.++...
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 665554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.0004 Score=54.51 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhcc
Q 036414 33 PKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILS 111 (252)
Q Consensus 33 ~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~ 111 (252)
+......+..|+.|+ +..... ....+..+++|++|.++.|.......+...+..+++|+++++++ +.+..+.. ++.
T Consensus 35 ~~gl~d~~~~le~ls-~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lst-l~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLS-VINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLST-LRP 111 (260)
T ss_pred cccccccccchhhhh-hhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccc-cch
Confidence 444445555666666 444433 45556678888899888884225555555556668888888888 54421000 335
Q ss_pred ccCCCCCCceEEeeecccCC---CCchhhhcCCCCceEEecc
Q 036414 112 EYKFPPSLTQLSLSNTELIE---DPMPTLEKLPHLEVLKLKQ 150 (252)
Q Consensus 112 ~~~~~~~L~~l~l~~~~~~~---~~~~~l~~~~~L~~L~l~~ 150 (252)
+..+ .+|..|++.+|..+. .--..+..+++|+.|+-..
T Consensus 112 l~~l-~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 112 LKEL-ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhh-cchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 5566 778888888876553 2223455677777776643
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=4.4e-05 Score=60.52 Aligned_cols=59 Identities=25% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML 178 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (252)
+.|+.|.|+-|.++ ....+..|.+|++|.|..|.+.+..-.+- ..++|+|+.|.|..|+
T Consensus 41 p~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 41 PLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENP 99 (388)
T ss_pred ccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCC
Confidence 44444444444443 22333444444444444444332111111 3344444444444444
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.0013 Score=49.81 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=52.6
Q ss_pred CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch--hHHHHhhccccCCCCCCceEEeeec-ccCCCCchhhhcC
Q 036414 64 TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM--WQITRMILSEYKFPPSLTQLSLSNT-ELIEDPMPTLEKL 140 (252)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~l~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~ 140 (252)
.++.++-+++. ....-.+.+..++.++.+++.+|..+ +. +..+++..++|+.|++++| +|++.....+..+
T Consensus 102 ~IeaVDAsds~--I~~eGle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSS--IMYEGLEHLRDLRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred eEEEEecCCch--HHHHHHHHHhccchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 35666666665 55555667777777888888776655 33 2333334477788888776 6676667777777
Q ss_pred CCCceEEecc
Q 036414 141 PHLEVLKLKQ 150 (252)
Q Consensus 141 ~~L~~L~l~~ 150 (252)
++|+.|.+.+
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 7777777643
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00062 Score=51.54 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=15.9
Q ss_pred CCceEEeeecccCCCCchhhhcCCCCceEEeccC
Q 036414 118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQN 151 (252)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 151 (252)
.++.++.+++.+..+....+..++.++.|.+..|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3344444444444444444444555555555433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.025 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=11.1
Q ss_pred cccEEEecCCccccceeccc
Q 036414 168 QLKILHLKSMLWLEEWTMGA 187 (252)
Q Consensus 168 ~L~~L~l~~~~~l~~~~~~~ 187 (252)
+|++|++++|+ ++.+|..+
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSF 19 (22)
T ss_dssp TESEEEETSSE-ESEEGTTT
T ss_pred CccEEECCCCc-CEeCChhh
Confidence 35666666664 66555543
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.55 E-value=0.095 Score=36.85 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=10.7
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEe
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKL 148 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 148 (252)
++++.+.+..+ +.......+..+ +++.+.+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 55555555332 222223334444 5555555
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.53 E-value=0.032 Score=24.45 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=6.2
Q ss_pred cccEEEecCCccccce
Q 036414 168 QLKILHLKSMLWLEEW 183 (252)
Q Consensus 168 ~L~~L~l~~~~~l~~~ 183 (252)
+|+.|++++|+ ++++
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45555555555 4443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.73 E-value=0.32 Score=34.09 Aligned_cols=80 Identities=10% Similarity=0.147 Sum_probs=33.1
Q ss_pred CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhh
Q 036414 60 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTL 137 (252)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l 137 (252)
..+++|+.+.+... ....-...+..+++|+.+.+... +.. ++ .+... ++++.+.+.. .+.......+
T Consensus 9 ~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~--~~~----i~~~~F~~~-~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 9 YNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN--LTS----IGDNAFSNC-KSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TT-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST--TSC----E-TTTTTT--TT-EEEEETS-TT-EE-TTTT
T ss_pred hCCCCCCEEEECCC---eeEeChhhccccccccccccccc--ccc----cceeeeecc-cccccccccc-cccccccccc
Confidence 34555666555432 22222233455556666666542 222 22 33333 5667776654 2222233455
Q ss_pred hcCCCCceEEecc
Q 036414 138 EKLPHLEVLKLKQ 150 (252)
Q Consensus 138 ~~~~~L~~L~l~~ 150 (252)
..+++++.+.+..
T Consensus 78 ~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 78 SNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TTECEEEETT
T ss_pred cccccccccccCc
Confidence 5677777777743
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.67 E-value=0.64 Score=22.54 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.3
Q ss_pred ccccEEEecCCcccccee
Q 036414 167 PQLKILHLKSMLWLEEWT 184 (252)
Q Consensus 167 ~~L~~L~l~~~~~l~~~~ 184 (252)
++|+.|++++|+ ++.+|
T Consensus 2 ~~L~~L~L~~N~-l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLP 18 (26)
T ss_pred CCCCEEECCCCc-CCcCC
Confidence 345555555554 44443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.67 E-value=0.64 Score=22.54 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.3
Q ss_pred ccccEEEecCCcccccee
Q 036414 167 PQLKILHLKSMLWLEEWT 184 (252)
Q Consensus 167 ~~L~~L~l~~~~~l~~~~ 184 (252)
++|+.|++++|+ ++.+|
T Consensus 2 ~~L~~L~L~~N~-l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLP 18 (26)
T ss_pred CCCCEEECCCCc-CCcCC
Confidence 345555555554 44443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.35 E-value=0.7 Score=21.93 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=6.4
Q ss_pred CCccEEEeeccC
Q 036414 63 PTVQTLRISGDL 74 (252)
Q Consensus 63 ~~L~~L~l~~~~ 74 (252)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 566666666664
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.51 E-value=0.84 Score=22.21 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=6.6
Q ss_pred ccccceeeccCC
Q 036414 191 PKLESLILNPCA 202 (252)
Q Consensus 191 ~~L~~L~l~~~~ 202 (252)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555554
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.73 E-value=0.026 Score=49.40 Aligned_cols=108 Identities=31% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCCceEEeeecccCCC----Cchhhh----cCCCCceEEeccCCccCc---eeeecCCCCCcc-ccEEEecCCccccce-
Q 036414 117 PSLTQLSLSNTELIED----PMPTLE----KLPHLEVLKLKQNSYFER---KLACVGCSSFPQ-LKILHLKSMLWLEEW- 183 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~----~~~~l~----~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~-L~~L~l~~~~~l~~~- 183 (252)
..++.++++.|.+... ....+. ...++++|++..|.++.. .+... ....+. +..+++..|. +.+.
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~-l~~~~~~~~el~l~~n~-l~d~g 249 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV-LASGESLLRELDLASNK-LGDVG 249 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH-HhccchhhHHHHHHhcC-cchHH
Confidence 5556666666554311 111222 345566666665554431 11122 233333 4446665555 3211
Q ss_pred ----ecccccc-ccccceeeccCCCCCC----ChHHHHhccccceeecccCC
Q 036414 184 ----TMGAGAM-PKLESLILNPCAYLRK----LPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 184 ----~~~~~~l-~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~ 226 (252)
......+ +.+++++++.|.+.+. +...+..++.++.+.+...+
T Consensus 250 ~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 250 VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 1112222 3456666666665442 22334455566666665544
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.43 E-value=1.6 Score=38.54 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=47.1
Q ss_pred hcCCCCceEEeccCCccCc-eeeecCCCCCccccEEEecCCcc-cc-ce-eccccccccccceeeccCCCCCCChH----
Q 036414 138 EKLPHLEVLKLKQNSYFER-KLACVGCSSFPQLKILHLKSMLW-LE-EW-TMGAGAMPKLESLILNPCAYLRKLPE---- 209 (252)
Q Consensus 138 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~-l~-~~-~~~~~~l~~L~~L~l~~~~~~~~~p~---- 209 (252)
.+.+.+..+++++|++... .+... ...+|+|+.|+|++|.. +. +. ....+.+ .|++|.+.||+..+.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssl-sq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSL-SQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHH-HHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHH
Confidence 3466777788877765431 11112 45678888888888732 22 11 1123333 378888888886654422
Q ss_pred --HH-Hhccccceeec
Q 036414 210 --EL-WRIKSLCKLEL 222 (252)
Q Consensus 210 --~l-~~l~~L~~L~l 222 (252)
.+ +.+|+|..||=
T Consensus 293 v~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLDG 308 (585)
T ss_pred HHHHHHhcchheeecC
Confidence 12 35677766653
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.52 E-value=4 Score=20.05 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=9.6
Q ss_pred cccEEEecCCccccceec
Q 036414 168 QLKILHLKSMLWLEEWTM 185 (252)
Q Consensus 168 ~L~~L~l~~~~~l~~~~~ 185 (252)
+|+.|++++|+ ++++|.
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 45666666666 555543
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.32 E-value=3.2 Score=36.71 Aligned_cols=80 Identities=24% Similarity=0.191 Sum_probs=47.1
Q ss_pred CCCceEEeeecccCCC-Cchh-hhcCCCCceEEeccCCcc-CceeeecCCCCCccccEEEecCCcccccee-------cc
Q 036414 117 PSLTQLSLSNTELIED-PMPT-LEKLPHLEVLKLKQNSYF-ERKLACVGCSSFPQLKILHLKSMLWLEEWT-------MG 186 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~-~~~~-l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-------~~ 186 (252)
+.+..+.+++|++... .... ....|+|+.|+|++|... ...+... -.+...|++|.+.||+-.+.+. ..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 7778888888876521 2222 256789999999887321 1111112 2244558899999999333331 11
Q ss_pred cccccccccee
Q 036414 187 AGAMPKLESLI 197 (252)
Q Consensus 187 ~~~l~~L~~L~ 197 (252)
-..||+|..|+
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 23578777665
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.07 E-value=8.7 Score=18.82 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=6.7
Q ss_pred ccccEEEecCCc
Q 036414 167 PQLKILHLKSML 178 (252)
Q Consensus 167 ~~L~~L~l~~~~ 178 (252)
.+|+.|+++.|+
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 345556665555
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.50 E-value=3.8 Score=20.30 Aligned_cols=15 Identities=53% Similarity=0.749 Sum_probs=9.3
Q ss_pred CCCceEEeeecccCC
Q 036414 117 PSLTQLSLSNTELIE 131 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~ 131 (252)
++|++|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456666666666653
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=49.17 E-value=0.29 Score=38.41 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=23.9
Q ss_pred CCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecc
Q 036414 63 PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTE 128 (252)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~ 128 (252)
+.+..|+++.+ ....+|..+.++..++.+.... +..+. .| ..... +.+++++..++.
T Consensus 65 t~~~rl~~skn---q~~~~~~d~~q~~e~~~~~~~~-n~~~~----~p~s~~k~-~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 65 TRLVRLDLSKN---QIKFLPKDAKQQRETVNAASHK-NNHSQ----QPKSQKKE-PHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHhccHh---hHhhChhhHHHHHHHHHHHhhc-cchhh----CCcccccc-CCcchhhhccCc
Confidence 33444444433 3333444444444444444443 22223 34 44444 444555444443
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=31.33 E-value=2.6 Score=33.33 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=59.8
Q ss_pred ccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchh
Q 036414 6 IDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVS 82 (252)
Q Consensus 6 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (252)
+.++|- .|....+.+.||++.|... ..-..+..++.+..|+ ++.+.. .|.+.+....++.+.+..| ..+..|
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~-~sknq~~~~~~d~~q~~e~~~~~~~~n---~~~~~p 104 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLD-LSKNQIKFLPKDAKQQRETVNAASHKN---NHSQQP 104 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHh-ccHhhHhhChhhHHHHHHHHHHHhhcc---chhhCC
Confidence 445554 3666777788888855432 3344456666677777 666554 7777777777777777776 467778
Q ss_pred HhhhccCCCCeEEeee
Q 036414 83 KSLCELHKLECLKLAN 98 (252)
Q Consensus 83 ~~l~~l~~L~~L~l~~ 98 (252)
.+..+.+++++++..+
T Consensus 105 ~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKK 120 (326)
T ss_pred ccccccCCcchhhhcc
Confidence 8888888888888877
No 87
>PRK09582 chaB cation transport regulator; Reviewed
Probab=25.66 E-value=41 Score=21.40 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.3
Q ss_pred CCCCCccccchHHHh-hc
Q 036414 1 MPSSYIDHSSEDIWM-MQ 17 (252)
Q Consensus 1 ~~~~~l~~lp~~i~~-l~ 17 (252)
||..++..||.++.. |+
T Consensus 1 MpY~~~~dLP~sv~~~LP 18 (76)
T PRK09582 1 MPYKTKSDLPESVKHVLP 18 (76)
T ss_pred CCCcchhhCcHHHHHhCc
Confidence 788888999988763 54
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.68 E-value=51 Score=16.16 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=10.1
Q ss_pred HHHhhccccEEEec
Q 036414 12 DIWMMQKLMHLNFG 25 (252)
Q Consensus 12 ~i~~l~~L~~L~l~ 25 (252)
.+..+++|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 46677788888765
Done!