Query 036414
Match_columns 252
No_of_seqs 151 out of 2217
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 21:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3.4E-26 1.2E-30 188.9 15.4 210 2-224 89-310 (328)
2 4fcg_A Uncharacterized protein 99.9 1.4E-23 4.6E-28 173.3 15.7 197 16-226 80-288 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-24 8.1E-29 176.8 10.1 212 3-226 59-279 (313)
4 1ogq_A PGIP-2, polygalacturona 99.9 8E-24 2.7E-28 173.6 8.0 205 7-226 91-302 (313)
5 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-22 2E-26 160.3 15.9 210 3-226 20-236 (285)
6 3rgz_A Protein brassinosteroid 99.9 3.3E-22 1.1E-26 182.4 14.7 138 8-153 409-550 (768)
7 3rgz_A Protein brassinosteroid 99.9 5.9E-22 2E-26 180.7 14.6 207 8-225 433-714 (768)
8 2z66_A Variable lymphocyte rec 99.9 1.1E-21 3.9E-26 160.1 12.1 209 4-226 17-259 (306)
9 2z80_A TOLL-like receptor 2, v 99.9 2.6E-22 9E-27 167.2 7.9 211 3-226 61-312 (353)
10 3zyi_A Leucine-rich repeat-con 99.9 2.5E-21 8.5E-26 166.5 13.9 210 3-226 84-301 (452)
11 3o6n_A APL1; leucine-rich repe 99.9 3.6E-21 1.2E-25 162.4 14.1 85 136-224 243-327 (390)
12 3zyj_A Leucine-rich repeat-con 99.9 3.1E-21 1.1E-25 165.3 13.8 211 3-226 73-290 (440)
13 3o6n_A APL1; leucine-rich repe 99.9 7E-21 2.4E-25 160.6 15.6 213 3-227 78-351 (390)
14 2id5_A Lingo-1, leucine rich r 99.9 9.8E-21 3.4E-25 163.7 16.8 213 2-225 40-258 (477)
15 2z66_A Variable lymphocyte rec 99.9 7.4E-22 2.5E-26 161.2 7.8 183 11-205 72-262 (306)
16 3oja_B Anopheles plasmodium-re 99.9 1.4E-20 4.9E-25 167.0 16.4 86 135-224 248-333 (597)
17 4eco_A Uncharacterized protein 99.8 7.3E-22 2.5E-26 176.5 7.3 207 4-225 193-467 (636)
18 1xku_A Decorin; proteoglycan, 99.8 1.9E-20 6.6E-25 154.5 15.3 206 3-225 61-273 (330)
19 2id5_A Lingo-1, leucine rich r 99.8 2.7E-20 9.3E-25 160.9 15.9 217 2-226 88-331 (477)
20 2z62_A TOLL-like receptor 4, v 99.8 1.1E-20 3.7E-25 152.2 12.0 208 3-225 16-234 (276)
21 3t6q_A CD180 antigen; protein- 99.8 1.2E-20 4E-25 167.7 13.2 213 2-225 41-335 (606)
22 4fmz_A Internalin; leucine ric 99.8 6.4E-20 2.2E-24 152.2 16.8 207 2-226 96-322 (347)
23 1wwl_A Monocyte differentiatio 99.8 7.6E-21 2.6E-25 155.8 10.8 207 9-226 80-307 (312)
24 3zyi_A Leucine-rich repeat-con 99.8 1.5E-20 5.2E-25 161.5 13.0 208 3-226 63-277 (452)
25 3v47_A TOLL-like receptor 5B a 99.8 1E-20 3.5E-25 162.5 11.4 110 112-226 295-406 (455)
26 3zyj_A Leucine-rich repeat-con 99.8 2E-20 6.8E-25 160.3 12.8 208 3-226 52-266 (440)
27 3v47_A TOLL-like receptor 5B a 99.8 3.5E-20 1.2E-24 159.2 14.0 93 3-98 39-138 (455)
28 2z80_A TOLL-like receptor 2, v 99.8 1.5E-20 5.3E-25 156.5 10.9 209 3-226 40-288 (353)
29 3t6q_A CD180 antigen; protein- 99.8 5.9E-20 2E-24 163.2 15.3 213 3-226 287-558 (606)
30 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-20 1.1E-24 150.1 11.7 192 2-205 40-239 (285)
31 3oja_B Anopheles plasmodium-re 99.8 5.3E-20 1.8E-24 163.4 14.1 215 2-228 83-358 (597)
32 4eco_A Uncharacterized protein 99.8 1.2E-20 4.1E-25 168.7 9.2 140 3-153 314-469 (636)
33 4fmz_A Internalin; leucine ric 99.8 3.5E-19 1.2E-23 147.8 16.9 205 2-226 52-276 (347)
34 1xku_A Decorin; proteoglycan, 99.8 1.6E-19 5.6E-24 148.9 14.1 209 2-226 84-304 (330)
35 2ft3_A Biglycan; proteoglycan, 99.8 5.6E-20 1.9E-24 151.8 11.2 83 118-203 194-276 (332)
36 3vq2_A TLR4, TOLL-like recepto 99.8 3.4E-20 1.2E-24 164.8 10.1 106 117-226 448-556 (606)
37 2o6q_A Variable lymphocyte rec 99.8 2.7E-19 9.4E-24 143.5 14.3 185 4-202 26-216 (270)
38 4ecn_A Leucine-rich repeat pro 99.8 5.9E-20 2E-24 168.2 10.1 203 9-225 481-707 (876)
39 4ecn_A Leucine-rich repeat pro 99.8 2E-19 6.8E-24 164.8 13.5 206 9-224 533-785 (876)
40 1p9a_G Platelet glycoprotein I 99.8 1.6E-19 5.5E-24 146.4 11.6 195 14-226 7-206 (290)
41 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-19 5.6E-24 149.0 11.6 205 4-226 43-275 (332)
42 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-19 3.7E-24 161.5 11.1 210 4-226 295-532 (606)
43 2xwt_C Thyrotropin receptor; s 99.8 3.1E-19 1.1E-23 140.6 12.3 204 5-226 22-237 (239)
44 3oja_A Leucine-rich immune mol 99.8 9.8E-20 3.3E-24 157.9 10.3 205 7-226 20-248 (487)
45 3o53_A Protein LRIM1, AGAP0063 99.8 6.7E-20 2.3E-24 150.5 8.7 207 5-226 21-248 (317)
46 1p9a_G Platelet glycoprotein I 99.8 5.3E-19 1.8E-23 143.4 13.6 189 2-205 18-209 (290)
47 2z63_A TOLL-like receptor 4, v 99.8 1.6E-19 5.5E-24 159.2 11.0 210 4-226 292-529 (570)
48 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-19 5E-24 148.5 9.6 197 19-226 12-225 (317)
49 2z7x_B TOLL-like receptor 1, v 99.8 9.2E-19 3.2E-23 152.9 15.2 91 3-98 30-124 (520)
50 2o6q_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 138.8 15.5 192 18-226 17-216 (270)
51 1h6u_A Internalin H; cell adhe 99.8 1.1E-18 3.9E-23 142.6 14.6 190 13-226 37-228 (308)
52 1h6u_A Internalin H; cell adhe 99.8 1.1E-18 3.7E-23 142.7 13.7 181 2-204 49-230 (308)
53 1o6v_A Internalin A; bacterial 99.8 2.1E-18 7.1E-23 148.8 15.6 193 13-225 173-385 (466)
54 3rfs_A Internalin B, repeat mo 99.8 3.8E-19 1.3E-23 142.9 10.2 182 13-208 37-222 (272)
55 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.6E-23 157.2 14.2 212 5-226 392-620 (680)
56 1o6v_A Internalin A; bacterial 99.8 3.9E-18 1.3E-22 147.1 17.0 66 4-73 56-122 (466)
57 2ast_B S-phase kinase-associat 99.8 2.1E-19 7E-24 148.5 8.5 206 10-225 61-282 (336)
58 2z62_A TOLL-like receptor 4, v 99.8 6.9E-19 2.4E-23 141.5 11.2 193 2-207 36-240 (276)
59 2z81_A CD282 antigen, TOLL-lik 99.8 1.8E-19 6.3E-24 158.2 7.6 128 3-138 35-169 (549)
60 3rfs_A Internalin B, repeat mo 99.8 5.3E-18 1.8E-22 136.2 14.4 175 37-225 37-215 (272)
61 2ast_B S-phase kinase-associat 99.8 3.6E-19 1.2E-23 147.0 7.2 213 2-225 78-303 (336)
62 4glp_A Monocyte differentiatio 99.8 3.6E-18 1.2E-22 139.7 12.4 198 15-226 89-305 (310)
63 2z7x_B TOLL-like receptor 1, v 99.8 5.9E-19 2E-23 154.1 8.2 196 16-226 246-479 (520)
64 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-18 4.3E-23 152.9 10.0 189 3-205 14-210 (549)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.5E-18 1.5E-22 149.9 13.5 91 3-98 61-155 (562)
66 2z63_A TOLL-like receptor 4, v 99.8 1E-18 3.6E-23 154.0 9.3 208 7-226 272-505 (570)
67 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-17 4.4E-22 143.5 15.7 174 3-203 51-245 (457)
68 1ziw_A TOLL-like receptor 3; i 99.8 3.9E-18 1.3E-22 153.5 12.5 213 3-225 34-306 (680)
69 3j0a_A TOLL-like receptor 5; m 99.8 5.8E-18 2E-22 155.9 13.4 92 5-99 60-158 (844)
70 1wwl_A Monocyte differentiatio 99.8 1.6E-18 5.3E-23 142.0 8.6 185 4-205 105-310 (312)
71 2ca6_A RAN GTPase-activating p 99.8 5.1E-19 1.7E-23 149.0 5.6 94 3-99 18-132 (386)
72 3j0a_A TOLL-like receptor 5; m 99.7 6.8E-18 2.3E-22 155.4 13.0 125 4-137 34-168 (844)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 8.3E-18 2.8E-22 148.3 12.8 139 2-153 39-181 (562)
74 3bz5_A Internalin-J, INLJ; leu 99.7 3.3E-17 1.1E-21 140.9 14.7 196 3-226 73-297 (457)
75 2xwt_C Thyrotropin receptor; s 99.7 4E-18 1.4E-22 134.2 8.2 184 3-202 40-237 (239)
76 3oja_A Leucine-rich immune mol 99.7 1.3E-18 4.4E-23 150.9 5.2 207 1-223 41-270 (487)
77 3m19_A Variable lymphocyte rec 99.7 2.8E-17 9.5E-22 130.4 12.4 175 17-206 14-194 (251)
78 3m19_A Variable lymphocyte rec 99.7 1.2E-16 4.3E-21 126.6 14.3 165 3-181 23-192 (251)
79 1h6t_A Internalin B; cell adhe 99.7 8.4E-17 2.9E-21 130.5 13.3 172 13-205 42-214 (291)
80 4g8a_A TOLL-like receptor 4; l 99.7 1.4E-16 4.8E-21 141.7 15.3 84 140-226 493-578 (635)
81 2ca6_A RAN GTPase-activating p 99.7 3.7E-18 1.3E-22 143.7 3.3 208 11-226 54-314 (386)
82 4glp_A Monocyte differentiatio 99.7 2.8E-17 9.6E-22 134.4 8.0 189 4-205 101-308 (310)
83 4ay9_X Follicle-stimulating ho 99.7 7.6E-17 2.6E-21 134.0 9.7 209 4-224 19-255 (350)
84 1h6t_A Internalin B; cell adhe 99.7 1.7E-16 5.9E-21 128.6 10.7 169 37-226 42-211 (291)
85 1jl5_A Outer protein YOPM; leu 99.7 3.6E-17 1.2E-21 140.5 5.9 41 3-43 20-60 (454)
86 1m9s_A Internalin B; cell inva 99.7 2.5E-16 8.4E-21 139.6 11.1 172 13-205 39-211 (605)
87 4ezg_A Putative uncharacterize 99.7 9.2E-16 3.2E-20 117.2 12.1 149 38-203 41-193 (197)
88 3goz_A Leucine-rich repeat-con 99.7 2.3E-16 7.8E-21 131.7 9.1 216 3-225 7-263 (362)
89 2o6s_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 120.8 9.2 157 41-215 28-189 (208)
90 4ezg_A Putative uncharacterize 99.7 3.6E-16 1.2E-20 119.5 9.2 152 60-226 41-192 (197)
91 1z7x_W Ribonuclease inhibitor; 99.6 4.1E-17 1.4E-21 140.2 2.5 83 13-98 24-122 (461)
92 3cvr_A Invasion plasmid antige 99.6 7.5E-16 2.6E-20 135.3 10.5 173 18-226 60-241 (571)
93 3g06_A SSPH2 (leucine-rich rep 99.6 5E-15 1.7E-19 131.5 15.9 193 2-226 69-295 (622)
94 1m9s_A Internalin B; cell inva 99.6 8.4E-16 2.9E-20 136.2 10.8 188 16-226 20-208 (605)
95 3goz_A Leucine-rich repeat-con 99.6 1.7E-17 5.9E-22 138.5 -0.3 214 3-226 31-295 (362)
96 3cvr_A Invasion plasmid antige 99.6 4.6E-15 1.6E-19 130.3 14.6 180 2-216 67-255 (571)
97 2o6s_A Variable lymphocyte rec 99.6 1.5E-15 5.1E-20 116.9 9.9 170 3-192 16-190 (208)
98 1jl5_A Outer protein YOPM; leu 99.6 3E-15 1E-19 128.6 12.3 75 142-226 318-407 (454)
99 3g06_A SSPH2 (leucine-rich rep 99.6 4.8E-15 1.7E-19 131.6 13.8 193 2-226 48-272 (622)
100 1z7x_W Ribonuclease inhibitor; 99.6 2E-17 6.8E-22 142.2 -1.9 60 166-226 340-409 (461)
101 1xeu_A Internalin C; cellular 99.6 4.1E-15 1.4E-19 118.7 10.6 158 3-183 28-187 (263)
102 4g8a_A TOLL-like receptor 4; l 99.6 2.8E-15 9.4E-20 133.4 10.5 183 5-202 42-235 (635)
103 4ay9_X Follicle-stimulating ho 99.6 7E-15 2.4E-19 122.2 11.2 199 13-225 6-212 (350)
104 3e6j_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 114.9 10.5 143 20-178 22-170 (229)
105 1dce_A Protein (RAB geranylger 99.6 2.1E-17 7.2E-22 145.5 -5.8 121 90-222 442-567 (567)
106 1xeu_A Internalin C; cellular 99.6 1.9E-15 6.5E-20 120.7 6.0 169 15-205 17-186 (263)
107 2v9t_B SLIT homolog 2 protein 99.6 9.7E-15 3.3E-19 113.5 9.8 147 20-181 14-165 (220)
108 3ogk_B Coronatine-insensitive 99.6 3.3E-15 1.1E-19 132.2 8.0 61 165-226 461-524 (592)
109 2ell_A Acidic leucine-rich nuc 99.5 1.8E-14 6.1E-19 107.1 8.1 133 61-203 22-159 (168)
110 3e6j_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 111.3 9.7 149 43-206 21-174 (229)
111 2xot_A Amphoterin-induced prot 99.5 1.4E-14 4.6E-19 120.9 8.1 114 61-183 62-178 (361)
112 2xot_A Amphoterin-induced prot 99.5 4.7E-14 1.6E-18 117.6 10.9 168 44-226 21-200 (361)
113 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 107.3 11.9 129 63-202 32-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 5.6E-14 1.9E-18 109.1 9.2 147 20-181 14-166 (220)
115 2je0_A Acidic leucine-rich nuc 99.5 1.9E-14 6.4E-19 104.8 4.5 124 89-223 17-148 (149)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 8.1E-14 2.8E-18 108.2 8.3 149 44-206 14-168 (220)
117 2ell_A Acidic leucine-rich nuc 99.5 1.9E-13 6.3E-18 101.5 8.4 131 15-154 22-160 (168)
118 2je0_A Acidic leucine-rich nuc 99.4 2.4E-13 8.2E-18 98.9 8.1 128 15-149 15-148 (149)
119 3ogk_B Coronatine-insensitive 99.4 1.1E-13 3.8E-18 122.4 7.2 80 14-97 161-251 (592)
120 1dce_A Protein (RAB geranylger 99.4 5.5E-15 1.9E-19 130.1 -3.1 178 38-226 346-544 (567)
121 2p1m_B Transport inhibitor res 99.4 3.8E-14 1.3E-18 125.4 2.0 87 137-226 428-517 (594)
122 1a9n_A U2A', U2A'; complex (nu 99.4 3E-13 1E-17 101.3 5.3 133 87-230 17-155 (176)
123 2p1m_B Transport inhibitor res 99.4 5.1E-13 1.8E-17 118.1 7.2 84 117-203 432-518 (594)
124 1a9n_A U2A', U2A'; complex (nu 99.4 2.8E-13 9.7E-18 101.4 4.7 133 59-203 15-152 (176)
125 1ds9_A Outer arm dynein; leuci 99.3 6.9E-15 2.3E-19 112.4 -7.3 135 79-225 38-184 (198)
126 4b8c_D Glucose-repressible alc 99.3 2.5E-13 8.5E-18 123.0 0.9 112 33-155 216-330 (727)
127 1w8a_A SLIT protein; signaling 99.3 5E-12 1.7E-16 96.0 8.0 89 112-204 50-139 (192)
128 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.6E-16 94.3 8.2 121 44-178 13-137 (193)
129 1w8a_A SLIT protein; signaling 99.3 1.3E-11 4.4E-16 93.7 8.5 122 20-153 11-138 (192)
130 4b8c_D Glucose-repressible alc 99.3 3E-12 1E-16 115.9 5.3 179 17-210 173-360 (727)
131 1ds9_A Outer arm dynein; leuci 99.2 5E-14 1.7E-18 107.6 -6.3 127 57-197 42-180 (198)
132 2o6r_A Variable lymphocyte rec 99.2 2.6E-11 8.8E-16 90.7 8.6 109 89-206 28-139 (177)
133 2wfh_A SLIT homolog 2 protein 99.2 5.2E-11 1.8E-15 90.4 9.6 122 20-153 13-138 (193)
134 2o6r_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 88.4 8.4 125 19-155 9-138 (177)
135 3sb4_A Hypothetical leucine ri 99.1 5.1E-10 1.7E-14 92.0 9.8 195 16-222 100-328 (329)
136 3g39_A Variable lymphocyte rec 99.0 1.8E-09 6.3E-14 80.1 7.6 85 117-204 30-115 (170)
137 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.2E-14 90.7 7.3 136 81-225 164-317 (362)
138 2r9u_A Variable lymphocyte rec 98.9 2.3E-09 7.9E-14 79.9 7.9 85 117-204 33-118 (174)
139 3un9_A NLR family member X1; l 98.9 1E-10 3.5E-15 97.8 -0.1 157 41-205 72-253 (372)
140 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 79.0 7.3 98 20-130 15-118 (174)
141 3g39_A Variable lymphocyte rec 98.9 3.9E-09 1.3E-13 78.3 7.2 101 19-131 11-116 (170)
142 3un9_A NLR family member X1; l 98.9 9.6E-11 3.3E-15 97.9 -2.0 159 16-182 71-253 (372)
143 2ra8_A Uncharacterized protein 98.9 1.9E-09 6.5E-14 89.6 5.8 154 58-226 167-341 (362)
144 4fdw_A Leucine rich hypothetic 98.8 5.9E-08 2E-12 81.8 12.7 81 117-203 271-357 (401)
145 4fdw_A Leucine rich hypothetic 98.8 6.1E-08 2.1E-12 81.7 12.3 200 6-225 146-355 (401)
146 3sb4_A Hypothetical leucine ri 98.7 1.4E-08 5E-13 83.2 5.5 81 139-225 224-307 (329)
147 2ifg_A High affinity nerve gro 98.6 3.7E-08 1.3E-12 81.3 6.0 89 5-98 20-112 (347)
148 2ifg_A High affinity nerve gro 98.6 1E-07 3.4E-12 78.6 7.0 103 67-181 12-116 (347)
149 3e4g_A ATP synthase subunit S, 98.6 5.2E-08 1.8E-12 72.1 4.4 87 117-206 61-154 (176)
150 3e4g_A ATP synthase subunit S, 98.3 7.7E-07 2.6E-11 65.8 5.1 85 63-152 61-150 (176)
151 1io0_A Tropomodulin; LRR prote 98.2 1.2E-06 4.3E-11 65.6 4.0 117 58-178 31-162 (185)
152 1io0_A Tropomodulin; LRR prote 98.1 6.7E-07 2.3E-11 67.1 1.6 114 37-154 32-164 (185)
153 3rw6_A Nuclear RNA export fact 97.8 1.1E-05 3.6E-10 64.0 3.7 86 138-226 167-262 (267)
154 3rw6_A Nuclear RNA export fact 97.8 1.3E-05 4.5E-10 63.4 4.2 60 14-74 167-231 (267)
155 4fs7_A Uncharacterized protein 97.7 0.00036 1.2E-08 58.4 11.5 194 12-224 157-375 (394)
156 4fs7_A Uncharacterized protein 97.7 0.00027 9.1E-09 59.2 9.9 195 6-220 173-393 (394)
157 4gt6_A Cell surface protein; l 97.4 0.0042 1.4E-07 51.8 13.7 102 117-226 265-368 (394)
158 4h09_A Hypothetical leucine ri 96.4 0.011 3.9E-07 48.8 8.1 147 15-176 192-342 (379)
159 4h09_A Hypothetical leucine ri 96.3 0.021 7.2E-07 47.1 9.3 180 5-200 145-342 (379)
160 4gt6_A Cell surface protein; l 96.1 0.028 9.7E-07 46.7 9.2 127 58-201 260-388 (394)
161 1pgv_A TMD-1, tropomodulin TMD 95.5 0.02 6.9E-07 42.8 5.2 89 59-150 37-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 95.3 0.0062 2.1E-07 45.6 1.8 111 38-152 38-168 (197)
163 3rfe_A Platelet glycoprotein I 93.9 0.055 1.9E-06 37.5 3.7 37 116-152 30-66 (130)
164 3rfe_A Platelet glycoprotein I 93.0 0.077 2.6E-06 36.8 3.3 32 42-74 32-66 (130)
165 2lz0_A Uncharacterized protein 34.8 40 0.0014 21.6 3.4 15 59-73 39-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.4e-26 Score=188.91 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=179.2
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
.++.++.+|..++++++|++|++++|.+. .+|..+.++++|++|+ ++.+.+ +|..++.+++|++|++++|. ...
T Consensus 89 ~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~-Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~~ 164 (328)
T 4fcg_A 89 RSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT-LARNPLRALPASIASLNRLRELSIRACP--ELT 164 (328)
T ss_dssp ESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEE-EESCCCCCCCGGGGGCTTCCEEEEEEET--TCC
T ss_pred cCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEE-CCCCccccCcHHHhcCcCCCEEECCCCC--Ccc
Confidence 35778899999999999999999987776 8888899999999999 888877 77789999999999999986 666
Q ss_pred chhHhhhc---------cCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEec
Q 036414 80 GVSKSLCE---------LHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLK 149 (252)
Q Consensus 80 ~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 149 (252)
.+|..+.. +++|++|++.+ +.+.. +| .+..+ ++|++|++++|.+. ..+..++.+++|++|+++
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~----lp~~l~~l-~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRS----LPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCC----CCGGGGGC-TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred ccChhHhhccchhhhccCCCCCEEECcC-CCcCc----chHhhcCC-CCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence 66666544 89999999999 56656 77 78888 99999999999998 456678899999999999
Q ss_pred cCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeeccc
Q 036414 150 QNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHW 224 (252)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 224 (252)
+|...+.... . ++++++|++|++++|+....++..++.+++|+.|++++|...+.+|..+.++++|+.+.+..
T Consensus 238 ~n~~~~~~p~-~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 238 GCTALRNYPP-I-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCBCCC-C-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCcchhhhHH-H-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8887664333 4 77899999999999986677888889999999999999999999999999999999988764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.4e-23 Score=173.34 Aligned_cols=197 Identities=21% Similarity=0.307 Sum_probs=171.9
Q ss_pred hccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414 16 MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC 93 (252)
Q Consensus 16 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (252)
..+++.|++++|.+. .+|..+..+++|++|+ ++.+.+ +|..++.+++|++|++++|. ...+|..+..+++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~-L~~n~l~~lp~~~~~l~~L~~L~Ls~n~---l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMT-IDAAGLMELPDTMQQFAGLETLTLARNP---LRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEE-EESSCCCCCCSCGGGGTTCSEEEEESCC---CCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEE-CCCCCccchhHHHhccCCCCEEECCCCc---cccCcHHHhcCcCCCE
Confidence 378999999977766 7888899999999999 888877 77778999999999999995 4478989999999999
Q ss_pred EEeeeccchhHHHHhhc-ccc---------CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCC
Q 036414 94 LKLANQGKMWQITRMIL-SEY---------KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGC 163 (252)
Q Consensus 94 L~l~~~~~~~~~~~l~~-~~~---------~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 163 (252)
|++.+|+..+. +| .+. .+ ++|++|++++|.++ ..|..++.+++|++|++++|.+.+.. .. .
T Consensus 155 L~L~~n~~~~~----~p~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~--~~-l 225 (328)
T 4fcg_A 155 LSIRACPELTE----LPEPLASTDASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALG--PA-I 225 (328)
T ss_dssp EEEEEETTCCC----CCSCSEEEC-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCC--GG-G
T ss_pred EECCCCCCccc----cChhHhhccchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCc--hh-h
Confidence 99999665555 66 443 37 99999999999998 67888999999999999999887532 23 6
Q ss_pred CCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 164 SSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 164 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+.+++|++|++++|.....++..++.+++|+.|++++|...+.+|..+..+++|++|++++|+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 689999999999999666778888999999999999999988999999999999999999975
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.4e-24 Score=176.78 Aligned_cols=212 Identities=21% Similarity=0.234 Sum_probs=170.1
Q ss_pred CCCcc---ccchHHHhhccccEEEecC-CCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCC
Q 036414 3 SSYID---HSSEDIWMMQKLMHLNFGS-ITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLS 75 (252)
Q Consensus 3 ~~~l~---~lp~~i~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~ 75 (252)
++.++ .+|.++.++++|++|++++ |.+...+|..+.++++|++|+ ++.+.. .|..++.+++|++|++++|.
T Consensus 59 ~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~-Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~- 136 (313)
T 1ogq_A 59 GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY-ITHTNVSGAIPDFLSQIKTLVTLDFSYNA- 136 (313)
T ss_dssp CCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE-EEEECCEEECCGGGGGCTTCCEEECCSSE-
T ss_pred CCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEE-CcCCeeCCcCCHHHhCCCCCCEEeCCCCc-
Confidence 34555 6899999999999999994 777778898999999999999 888776 67778899999999999996
Q ss_pred ccccchhHhhhccCCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414 76 HYHSGVSKSLCELHKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153 (252)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 153 (252)
....+|..+..+++|++|++.+ +.+ +. +| .+..+.++|++|++++|.+....|..++.+. |+.|++++|.+
T Consensus 137 -l~~~~p~~~~~l~~L~~L~L~~-N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 137 -LSGTLPPSISSLPNLVGITFDG-NRISGA----IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp -EESCCCGGGGGCTTCCEEECCS-SCCEEE----CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred -cCCcCChHHhcCCCCCeEECcC-CcccCc----CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5557888889999999999998 444 34 66 7777723899999999988877788887776 99999988877
Q ss_pred cCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 154 FERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 154 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
.+.. +.. +..+++|+.|++++|. +.........+++|+.|++++|...+.+|..+..+++|++|+++++.
T Consensus 210 ~~~~-~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 210 EGDA-SVL-FGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECC-GGG-CCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cCcC-CHH-HhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 6432 223 6678889999988888 66554446778888889998888776788888888888888888763
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=8e-24 Score=173.64 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=178.7
Q ss_pred cccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH
Q 036414 7 DHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK 83 (252)
Q Consensus 7 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (252)
+.+|.+++++++|++|++++|.+....|..+..+++|++|+ ++.+.+ .|..++.+++|++|++++|. ....+|.
T Consensus 91 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~ 167 (313)
T 1ogq_A 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLPPSISSLPNLVGITFDGNR--ISGAIPD 167 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE-CCSSEEESCCCGGGGGCTTCCEEECCSSC--CEEECCG
T ss_pred ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe-CCCCccCCcCChHHhcCCCCCeEECcCCc--ccCcCCH
Confidence 37899999999999999998888778899999999999999 988875 67789999999999999997 6668899
Q ss_pred hhhccC-CCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414 84 SLCELH-KLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC 160 (252)
Q Consensus 84 ~l~~l~-~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 160 (252)
.+..++ +|++|++.+ +.+ +. +| .+..+ + |++|++++|.++...+..++.+++|+.|++++|.+......
T Consensus 168 ~l~~l~~~L~~L~L~~-N~l~~~----~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 239 (313)
T 1ogq_A 168 SYGSFSKLFTSMTISR-NRLTGK----IPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp GGGCCCTTCCEEECCS-SEEEEE----CCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred HHhhhhhcCcEEECcC-Ceeecc----CChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-
Confidence 999998 999999999 554 34 56 77776 5 99999999999888889999999999999999988653332
Q ss_pred cCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 161 VGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
...+++|++|++++|. +. .++..++.+++|+.|++++|...+.+|.. ..+++|+.+++.+++
T Consensus 240 --~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 --VGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp --CCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred --ccccCCCCEEECcCCc-ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5578999999999999 76 67888899999999999999987778875 789999999998876
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=5.9e-22 Score=160.29 Aligned_cols=210 Identities=17% Similarity=0.133 Sum_probs=173.0
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++.+|.++ .++|++|++++|.+....+..+..+++|++|+ ++.+.. .+..++.+++|++|++++|. ...
T Consensus 20 ~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--~l~ 94 (285)
T 1ozn_A 20 QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW-LHSNVLARIDAAAFTGLALLEQLDLSDNA--QLR 94 (285)
T ss_dssp SSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSCT--TCC
T ss_pred cCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEE-CCCCccceeCHhhcCCccCCCEEeCCCCC--Ccc
Confidence 46788888754 46899999998887766667789999999999 888876 46678999999999999984 244
Q ss_pred ch-hHhhhccCCCCeEEeeeccchhHHHHhh-c-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 80 GV-SKSLCELHKLECLKLANQGKMWQITRMI-L-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 80 ~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
.+ +..+..+++|++|++.+ +.+.. + + .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+...
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDR-CGLQE----LGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTT-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccCHHHhcCCcCCCEEECCC-CcCCE----ECHhHhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 44 67788999999999998 55544 4 3 56777 9999999999999977777789999999999999987643
Q ss_pred eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
.. .. +..+++|++|++++|. +.++ +..++.+++|+.|++++|...+..+..+..+++|++|++++++
T Consensus 169 ~~-~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 169 PE-RA-FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CT-TT-TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CH-HH-hcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 22 23 6689999999999999 7776 6678889999999999998765445568899999999999865
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=3.3e-22 Score=182.37 Aligned_cols=138 Identities=20% Similarity=0.160 Sum_probs=87.2
Q ss_pred ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHh
Q 036414 8 HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKS 84 (252)
Q Consensus 8 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (252)
.+|..++++++|++|++++|.+....|..+..+++|+.|+ ++.+.. .|..++.+++|++|++++|. ....+|..
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~ 485 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK-LWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSG 485 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE-CCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE-CCCCcccCcCCHHHcCCCCceEEEecCCc--ccCcCCHH
Confidence 5666777777777777776666666676777777777777 666654 55556666777777777665 44456666
Q ss_pred hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414 85 LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153 (252)
Q Consensus 85 l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 153 (252)
+..+++|++|++.+|.-.+. +| ++..+ ++|++|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus 486 l~~l~~L~~L~L~~N~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGE----IPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSC----CCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred HhcCCCCCEEEccCCccCCc----CChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 66666777777766322123 45 55555 6666666666666555555666666666666655543
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=5.9e-22 Score=180.71 Aligned_cols=207 Identities=18% Similarity=0.134 Sum_probs=117.1
Q ss_pred ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHh
Q 036414 8 HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKS 84 (252)
Q Consensus 8 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (252)
.+|..++.+++|++|++++|.+...+|..+..+++|++|+ ++.|.. .|..++.+++|++|++++|. ....+|..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~-L~~N~l~~~~p~~l~~l~~L~~L~L~~N~--l~~~~p~~ 509 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI-LDFNDLTGEIPSGLSNCTNLNWISLSNNR--LTGEIPKW 509 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE-CCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE-ecCCcccCcCCHHHhcCCCCCEEEccCCc--cCCcCChH
Confidence 4566666666777777766666656666666666666666 666554 45556666666666666665 44455666
Q ss_pred hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhh--------------------------
Q 036414 85 LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTL-------------------------- 137 (252)
Q Consensus 85 l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l-------------------------- 137 (252)
+..+++|++|++.+|.-.+. +| .+..+ ++|+++++++|.+.+..|..+
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGN----IPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEE----CCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred HhcCCCCCEEECCCCcccCc----CCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 66666666666666322233 44 45555 566666665555443333221
Q ss_pred --------------------------------------------hcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414 138 --------------------------------------------EKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH 173 (252)
Q Consensus 138 --------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 173 (252)
+.+++|+.|++++|.+.+..+. . ++.++.|+.|+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~-l~~l~~L~~L~ 662 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E-IGSMPYLFILN 662 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-G-GGGCTTCCEEE
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-H-HhccccCCEEe
Confidence 1234455556655555443222 2 44555666666
Q ss_pred ecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 174 LKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 174 l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
+++|. ++ .+|..++.+++|+.|++++|...+.+|..+..+++|++|+++++
T Consensus 663 Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 663 LGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 66665 43 44555555666666666666555555555555666666665543
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.1e-21 Score=160.14 Aligned_cols=209 Identities=17% Similarity=0.122 Sum_probs=111.8
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCCc-----hhhcCCCCCccEEEeeccCCccc
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCT-----PDILSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~ 78 (252)
+.++++|..+. ++|++|++++|.+....+..+.++++|++|+ ++.+... +..+..+++|++|++++|. .
T Consensus 17 ~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~---i 90 (306)
T 2z66_A 17 KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLS-LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG---V 90 (306)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCCCEEEEEEHHHHSCSCCCEEECCSCS---E
T ss_pred CCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEE-CCCCccCcccCcccccccccccCEEECCCCc---c
Confidence 34455554332 3555555554444322222245555555555 5544431 2333344555555555542 2
Q ss_pred cchhHhh-------------------------hccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCC-
Q 036414 79 SGVSKSL-------------------------CELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIE- 131 (252)
Q Consensus 79 ~~~~~~l-------------------------~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~- 131 (252)
..++..+ ..+++|++|++++ +.+... .+ .+..+ ++|++|++++|.+.+
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~l-~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVA---FNGIFNGL-SSLEVLKMAGNSFQEN 165 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEEC---STTTTTTC-TTCCEEECTTCEEGGG
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCcc---chhhcccC-cCCCEEECCCCccccc
Confidence 2333334 4445555555544 222110 22 34445 666666666665553
Q ss_pred CCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCCCChHH
Q 036414 132 DPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEE 210 (252)
Q Consensus 132 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~ 210 (252)
..+..++.+++|++|++++|.+.... +.. +..+++|++|++++|. +++++. .++.+++|+.|++++|......|..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLS-PTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcC-HHH-hcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 34555566666666666666554421 112 4566777777777777 665532 4566777888888877766555656
Q ss_pred HHhcc-ccceeecccCC
Q 036414 211 LWRIK-SLCKLELHWPQ 226 (252)
Q Consensus 211 l~~l~-~L~~L~l~~~~ 226 (252)
+..++ +|++|++++++
T Consensus 243 ~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCCCTTCCEEECTTCC
T ss_pred HHhhhccCCEEEccCCC
Confidence 66664 78888887654
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2.6e-22 Score=167.18 Aligned_cols=211 Identities=18% Similarity=0.175 Sum_probs=136.0
Q ss_pred CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccc
Q 036414 3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~ 78 (252)
++.++.+|. .+.++++|++|++++|.+....+..+.++++|++|+ ++.+.. .+.. ++.+++|++|++++|. .
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l 136 (353)
T 2z80_A 61 NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD-LSYNYLSNLSSSWFKPLSSLTFLNLLGNP---Y 136 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CCSSCCSSCCHHHHTTCTTCSEEECTTCC---C
T ss_pred CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE-CCCCcCCcCCHhHhCCCccCCEEECCCCC---C
Confidence 455566655 466677777777776655544455566777777777 666655 3333 6667777777777663 3
Q ss_pred cchhH--hhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCcc
Q 036414 79 SGVSK--SLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154 (252)
Q Consensus 79 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 154 (252)
..++. .+..+++|++|++.+++.+.. ++ .+..+ ++|++|++++|.+....+..++.+++|++|++++|.+.
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMDTFTK----IQRKDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred cccCchhhhccCCCCcEEECCCCccccc----cCHHHccCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 33443 456677777777776433433 32 45555 77777777777766555666677777777777666654
Q ss_pred CceeeecCCCCCccccEEEecCCccccce--------------------------------eccccccccccceeeccCC
Q 036414 155 ERKLACVGCSSFPQLKILHLKSMLWLEEW--------------------------------TMGAGAMPKLESLILNPCA 202 (252)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--------------------------------~~~~~~l~~L~~L~l~~~~ 202 (252)
..... . ...+++|++|++++|. ++.+ +..++.+++|+.|++++|.
T Consensus 212 ~~~~~-~-~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 212 LLLEI-F-VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp THHHH-H-HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred cchhh-h-hhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 32211 1 2246777777777776 5432 2224567899999999987
Q ss_pred CCCCChHHH-HhccccceeecccCC
Q 036414 203 YLRKLPEEL-WRIKSLCKLELHWPQ 226 (252)
Q Consensus 203 ~~~~~p~~l-~~l~~L~~L~l~~~~ 226 (252)
.. .+|..+ ..+++|++|++++++
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 65 788764 789999999999875
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.5e-21 Score=166.48 Aligned_cols=210 Identities=19% Similarity=0.186 Sum_probs=153.4
Q ss_pred CCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccc
Q 036414 3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~ 78 (252)
++.|+.+ |.++..+++|++|++++|.+....+..+.++++|++|+ ++.+.+ .+. .+..+++|++|++++|. ..
T Consensus 84 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~ 160 (452)
T 3zyi_A 84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE-LFDNWLTVIPSGAFEYLSKLRELWLRNNP--IE 160 (452)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCSBCCTTTSSSCTTCCEEECCSCC--CC
T ss_pred CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE-CCCCcCCccChhhhcccCCCCEEECCCCC--cc
Confidence 4566666 34577777888888877766655566777778888888 777765 333 36677888888888775 33
Q ss_pred cchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
...+..+..+++|+.|++.+++.+.. ++ .+..+ ++|++|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~~~~l~~----i~~~~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 161 SIPSYAFNRVPSLMRLDLGELKKLEY----ISEGAFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCE----ECTTTTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEE
T ss_pred eeCHhHHhcCCcccEEeCCCCCCccc----cChhhccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCccc
Confidence 33334667778888888877555544 44 46677 8899999998888743 3467788999999988887653
Q ss_pred eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCCh-HHHHhccccceeecccCC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLP-EELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~ 226 (252)
.. .. +.++++|+.|++++|. ++.+ +..+..+++|+.|++++|... .+| ..+..+++|++|++.+++
T Consensus 234 ~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 234 RP-GS-FHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CG-GG-GTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred Cc-cc-ccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence 32 23 6788999999999998 7766 455788999999999999775 444 445788999999998765
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.6e-21 Score=162.37 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=42.4
Q ss_pred hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhcc
Q 036414 136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIK 215 (252)
Q Consensus 136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 215 (252)
.++.+++|++|++++|.+.+... .. +..+++|++|++++|+ ++.++.....+++|+.|++++|... .+|..+..++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~ 318 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMY-HP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEES-GG-GTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred HHcCCCCccEEECCCCcCCCcCh-hH-ccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence 34555566666666555543211 12 3455555555555555 5555444445555555555555432 4444444444
Q ss_pred ccceeeccc
Q 036414 216 SLCKLELHW 224 (252)
Q Consensus 216 ~L~~L~l~~ 224 (252)
+|++|++++
T Consensus 319 ~L~~L~L~~ 327 (390)
T 3o6n_A 319 RLENLYLDH 327 (390)
T ss_dssp TCSEEECCS
T ss_pred cCCEEECCC
Confidence 444444443
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=165.33 Aligned_cols=211 Identities=16% Similarity=0.125 Sum_probs=151.3
Q ss_pred CCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccc
Q 036414 3 SSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 3 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~ 78 (252)
++.++.++ .++..+++|++|++++|.+....+..+.++++|++|+ ++.|.+ ++. .+..+++|++|++++|. ..
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--i~ 149 (440)
T 3zyj_A 73 ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE-LFDNRLTTIPNGAFVYLSKLKELWLRNNP--IE 149 (440)
T ss_dssp SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE-CCSSCCSSCCTTTSCSCSSCCEEECCSCC--CC
T ss_pred CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE-CCCCcCCeeCHhHhhccccCceeeCCCCc--cc
Confidence 45566664 3567777777777776666555556677777777777 777665 333 46677778888887775 33
Q ss_pred cchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
...+..+..+++|++|++.+++.+.. ++ .+..+ ++|++|++++|.++.. + .+..+++|+.|++++|.+...
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~~l~~----i~~~~~~~l-~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELKRLSY----ISEGAFEGL-SNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCE----ECTTTTTTC-SSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE
T ss_pred ccCHHHhhhCcccCEeCCCCCCCcce----eCcchhhcc-cccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCcc
Confidence 33334567778888888877555544 44 46667 8889999888888733 3 467788899999988877653
Q ss_pred eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
.. .. +.++++|+.|++++|. ++.+ +..+..+++|+.|++++|....--+..+..+++|+.|++.+++
T Consensus 223 ~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 RP-GS-FQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CT-TT-TTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred Ch-hh-hccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 22 23 6788999999999998 7776 4457789999999999998764333446788999999998765
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=7e-21 Score=160.58 Aligned_cols=213 Identities=20% Similarity=0.228 Sum_probs=140.7
Q ss_pred CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccc
Q 036414 3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~ 78 (252)
++.++.+|. ++..+++|++|++++|.+....|..+.++++|++|+ ++.+.. ++.. ++.+++|++|++++|. ..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~ 154 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV-LERNDLSSLPRGIFHNTPKLTTLSMSNNN--LE 154 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE-CCCCccCcCCHHHhcCCCCCcEEECCCCc--cC
Confidence 344555543 455555666666665555444455566666666666 665554 3333 3566677777776664 33
Q ss_pred cchhHhhhccCCCCeEEeeeccch-----hHHHHh---------------------------------------------
Q 036414 79 SGVSKSLCELHKLECLKLANQGKM-----WQITRM--------------------------------------------- 108 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~l--------------------------------------------- 108 (252)
...+..+..+++|++|++.++ .+ ..+.++
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 233 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 233 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEEC
T ss_pred ccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEEC
Confidence 333445667777777777763 22 110000
Q ss_pred -------hccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccc
Q 036414 109 -------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE 181 (252)
Q Consensus 109 -------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 181 (252)
.+++..+ ++|++|++++|.+....+..++.+++|+.|++++|.+.. ++.. ...+++|++|++++|+ ++
T Consensus 234 ~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~~l~~L~~L~L~~n~-l~ 308 (390)
T 3o6n_A 234 QHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSHNH-LL 308 (390)
T ss_dssp CSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECS-SSCCTTCCEEECCSSC-CC
T ss_pred CCCCCcccHHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcc-cCCCCCCCEEECCCCc-ce
Confidence 0123444 678888888887776667888889999999998888765 3333 5678899999999998 88
Q ss_pred ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCCH
Q 036414 182 EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQP 227 (252)
Q Consensus 182 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~ 227 (252)
.++...+.+++|+.|++++|... .++ +..+++|++|++++++.
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCE
T ss_pred ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCc
Confidence 88777788899999999998764 444 56788999999988874
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=9.8e-21 Score=163.70 Aligned_cols=213 Identities=20% Similarity=0.222 Sum_probs=152.1
Q ss_pred CCCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCcc
Q 036414 2 PSSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 2 ~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~ 77 (252)
.++.++.++ ..+.++++|++|++++|.+....|..+.++++|++|+ ++.+.. ++. .++.+++|++|++++|. .
T Consensus 40 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i 116 (477)
T 2id5_A 40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG-LRSNRLKLIPLGVFTGLSNLTKLDISENK--I 116 (477)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CCSSCCCSCCTTSSTTCTTCCEEECTTSC--C
T ss_pred CCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE-CCCCcCCccCcccccCCCCCCEEECCCCc--c
Confidence 356777774 4688888899999987777666677888888999998 887766 443 36788899999998886 5
Q ss_pred ccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
....+..+..+++|++|++.+ +.+..+ .+ .+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+...
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGD-NDLVYI---SHRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECC-TTCCEE---CTTSSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred ccCChhHccccccCCEEECCC-Ccccee---ChhhccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 555567788889999999988 444330 23 66777 8999999999988877777788899999999988877543
Q ss_pred eeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCCh-HHHHhccccceeecccC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP-EELWRIKSLCKLELHWP 225 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~ 225 (252)
.. .. +..+++|+.|++++|+.+..++.......+|+.|++++|... .+| ..+..+++|++|+++++
T Consensus 192 ~~-~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 192 RD-YS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CT-TC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSS
T ss_pred Ch-hh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCC
Confidence 22 23 567778888888877755555554444456666666666543 344 34555666666666654
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=7.4e-22 Score=161.23 Aligned_cols=183 Identities=18% Similarity=0.182 Sum_probs=135.6
Q ss_pred hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--ch--hhcCCCCCccEEEeeccCCccccchhHhhh
Q 036414 11 EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TP--DILSRLPTVQTLRISGDLSHYHSGVSKSLC 86 (252)
Q Consensus 11 ~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (252)
..+..+++|++|++++|.+. .+|..+..+++|++|+ ++.+.. .+ ..+..+++|++|++++|. .....+..+.
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~ 147 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD-FQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFN 147 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE-CTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEE-CCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcc
Confidence 33334444444444433322 3445567777788887 777655 22 357788899999998886 5556677788
Q ss_pred ccCCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCC
Q 036414 87 ELHKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCS 164 (252)
Q Consensus 87 ~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 164 (252)
.+++|++|++.+ +.+ ... +| .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . ..
T Consensus 148 ~l~~L~~L~l~~-n~l~~~~---~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~ 220 (306)
T 2z66_A 148 GLSSLEVLKMAG-NSFQENF---LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-P-YK 220 (306)
T ss_dssp TCTTCCEEECTT-CEEGGGE---ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-G-GT
T ss_pred cCcCCCEEECCC-Ccccccc---chhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-h-cc
Confidence 999999999998 444 311 46 67787 9999999999999877788899999999999999988663322 3 56
Q ss_pred CCccccEEEecCCccccce-eccccccc-cccceeeccCCCCC
Q 036414 165 SFPQLKILHLKSMLWLEEW-TMGAGAMP-KLESLILNPCAYLR 205 (252)
Q Consensus 165 ~~~~L~~L~l~~~~~l~~~-~~~~~~l~-~L~~L~l~~~~~~~ 205 (252)
.+++|++|++++|+ +.+. +..+..++ +|+.|++++|+...
T Consensus 221 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 221 CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCCeec
Confidence 89999999999999 7654 55667774 89999999998654
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-20 Score=167.04 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=44.2
Q ss_pred hhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhc
Q 036414 135 PTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRI 214 (252)
Q Consensus 135 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 214 (252)
..++.+++|+.|++++|.+.+... .. ++.+++|+.|++++|. ++.++...+.+++|+.|++++|... .+|..+..+
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMY-HP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEES-GG-GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred hhhccCCCCCEEECCCCccCCCCH-HH-hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 334555566666665555543221 12 4455556666666555 5555554555555666666555543 455444444
Q ss_pred cccceeeccc
Q 036414 215 KSLCKLELHW 224 (252)
Q Consensus 215 ~~L~~L~l~~ 224 (252)
++|+.|++++
T Consensus 324 ~~L~~L~L~~ 333 (597)
T 3oja_B 324 DRLENLYLDH 333 (597)
T ss_dssp TTCSEEECCS
T ss_pred CCCCEEECCC
Confidence 4444444443
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=7.3e-22 Score=176.52 Aligned_cols=207 Identities=17% Similarity=0.158 Sum_probs=132.1
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCC-----------------CCcccC--CCCCCcEecccCCCCC---chhhcCC
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAP-----------------PKNYSS--SLKNLIFISALHPSSC---TPDILSR 61 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~~l~~~~~---~~~~l~~ 61 (252)
+.++.+|.+++++++|++|++++|.+... +|..+. ++++|++|+ ++.+.. .|..+++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~-L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE-VYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE-EECCTTCSSCCTTTTT
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE-ecCCcCCccChHHHhc
Confidence 46667899999999999999998876654 888888 999999999 887765 7778889
Q ss_pred CCCccEEEeeccCCcccc--chhHhhhcc------CCCCeEEeeeccchhHHHHhhcc---ccCCCCCCceEEeeecccC
Q 036414 62 LPTVQTLRISGDLSHYHS--GVSKSLCEL------HKLECLKLANQGKMWQITRMILS---EYKFPPSLTQLSLSNTELI 130 (252)
Q Consensus 62 l~~L~~L~l~~~~~~~~~--~~~~~l~~l------~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~~L~~l~l~~~~~~ 130 (252)
+++|++|++++|. ... .+|..+..+ ++|++|++.+ +.+.. +|. +..+ ++|++|++++|.+.
T Consensus 272 l~~L~~L~Ls~n~--~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~----ip~~~~l~~l-~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 272 LPEMQLINVACNR--GISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKT----FPVETSLQKM-KKLGMLECLYNQLE 343 (636)
T ss_dssp CSSCCEEECTTCT--TSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSS----CCCHHHHTTC-TTCCEEECCSCCCE
T ss_pred CCCCCEEECcCCC--CCccccchHHHHhhhccccCCCCCEEECCC-CcCCc----cCchhhhccC-CCCCEEeCcCCcCc
Confidence 9999999998883 133 577777665 7888888887 44434 453 5555 67777777666665
Q ss_pred CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCcc-ccEEEecCCccccceecc-----------------------
Q 036414 131 EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQ-LKILHLKSMLWLEEWTMG----------------------- 186 (252)
Q Consensus 131 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~----------------------- 186 (252)
+..| .++.+++|+.|++++|.+. .++.. ...+++ |++|++++|. ++.+|..
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQIT--EIPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEE--ECCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred cchh-hhCCCCCCCEEECCCCccc--cccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 3344 4455555555555554443 12212 333444 4444444444 3333332
Q ss_pred ---cc-------ccccccceeeccCCCCCCChHHH-HhccccceeecccC
Q 036414 187 ---AG-------AMPKLESLILNPCAYLRKLPEEL-WRIKSLCKLELHWP 225 (252)
Q Consensus 187 ---~~-------~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~ 225 (252)
++ .+++|+.|++++|... .+|..+ ..+++|++|+++++
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence 22 3445666666665544 455443 34666666666655
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.9e-20 Score=154.46 Aligned_cols=206 Identities=18% Similarity=0.165 Sum_probs=106.9
Q ss_pred CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++.+|. .+.++++|++|++++|.+....|..+..+++|++|+ ++.+.. ++..+. ++|++|++++|. ...
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~n~l~~l~~~~~--~~L~~L~l~~n~--l~~ 135 (330)
T 1xku_A 61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY-LSKNQLKELPEKMP--KTLQELRVHENE--ITK 135 (330)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE-CCSSCCSBCCSSCC--TTCCEEECCSSC--CCB
T ss_pred CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE-CCCCcCCccChhhc--ccccEEECCCCc--ccc
Confidence 456666665 567777777777776666655567777777777777 766655 333332 566666666664 333
Q ss_pred chhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 80 GVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
..+..+..+++|+.|++.++ .+. .. .+ .+..+ ++|++|++++|.++. .+..+ .++|++|++++|.+...
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~~l-~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTN-PLKSSGI---ENGAFQGM-KKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKV 207 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSS-CCCGGGB---CTTGGGGC-TTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEE
T ss_pred cCHhHhcCCccccEEECCCC-cCCccCc---ChhhccCC-CCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCcc
Confidence 33445666777777777663 221 10 12 34444 555555555555442 22111 14445555544443322
Q ss_pred eeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
.. .. +..+++|++|++++|. ++.++. .++.+++|+.|++++|... .+|.++..+++|++|+++++
T Consensus 208 ~~-~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 208 DA-AS-LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CT-GG-GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred CH-HH-hcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 11 11 3344555555555554 444322 3344455555555554432 44444444555555555443
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=160.92 Aligned_cols=217 Identities=17% Similarity=0.115 Sum_probs=158.9
Q ss_pred CCCCccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 2 PSSYIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 2 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
.++.++.+|.. +..+++|++|++++|.+....+..+.++++|++|+ ++.+.. .+..+..+++|++|++++|. .
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l 164 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE-VGDNDLVYISHRAFSGLNSLEQLTLEKCN--L 164 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-ECCTTCCEECTTSSTTCTTCCEEEEESCC--C
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE-CCCCccceeChhhccCCCCCCEEECCCCc--C
Confidence 45778888875 68899999999998887777777888899999999 887766 45567788888888888885 3
Q ss_pred ccchhHhhhccCCCCeEEeeeccchhHH--------HHh-------------hc-cccCCCCCCceEEeeecccCCCCch
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMWQI--------TRM-------------IL-SEYKFPPSLTQLSLSNTELIEDPMP 135 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------~~l-------------~~-~~~~~~~~L~~l~l~~~~~~~~~~~ 135 (252)
....+..+..+++|+.|++.+ +.+..+ .+| ++ ..... .+|++|++++|.++...+.
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEES-CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHH
T ss_pred cccChhHhcccCCCcEEeCCC-CcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHH
Confidence 333344566777777777766 222110 000 22 22223 4777777777877765667
Q ss_pred hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhc
Q 036414 136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRI 214 (252)
Q Consensus 136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l 214 (252)
.+..+++|+.|++++|.+..... .. +.++++|+.|++++|. +..+ +..+..+++|+.|++++|....--+..+..+
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEG-SM-LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECT-TS-CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred HhcCccccCeeECCCCcCCccCh-hh-ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 78889999999999888764322 23 6788999999999998 7776 5567889999999999998754333445788
Q ss_pred cccceeecccCC
Q 036414 215 KSLCKLELHWPQ 226 (252)
Q Consensus 215 ~~L~~L~l~~~~ 226 (252)
++|++|++.+++
T Consensus 320 ~~L~~L~l~~N~ 331 (477)
T 2id5_A 320 GNLETLILDSNP 331 (477)
T ss_dssp GGCCEEECCSSC
T ss_pred cccCEEEccCCC
Confidence 999999998775
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.1e-20 Score=152.16 Aligned_cols=208 Identities=17% Similarity=0.119 Sum_probs=163.7
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
+..+.++|..+. ++|++|++++|.+....+..+.++++|++|+ ++.+.. .+..+..+++|++|++++|. ...
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 90 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD-LSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQS 90 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEE-CTTCCCCEECTTTTTTCTTCCEEECTTCC--CCE
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEE-CCCCcCCccCHHHccCCcCCCEEECCCCc--cCc
Confidence 355677887654 5799999998887766666889999999999 988876 34458889999999999996 555
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC-CchhhhcCCCCceEEeccCCccCc
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED-PMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
..+..+.++++|++|++.+ +.+.. ++ .+..+ ++|++|++++|.+... .+..++.+++|++|++++|.+...
T Consensus 91 ~~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVE-TNLAS----LENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECTTTTTTCTTCCEEECTT-SCCCC----STTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cChhhhcCCccccEEECCC-CCccc----cCchhcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 5557788999999999998 55533 33 57777 9999999999999864 488899999999999999987653
Q ss_pred eeeecCCCCCcccc----EEEecCCccccceeccccccccccceeeccCCCCCCChH-HHHhccccceeecccC
Q 036414 157 KLACVGCSSFPQLK----ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWP 225 (252)
Q Consensus 157 ~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~ 225 (252)
... . +..+++|+ .|++++|. ++.++.......+|+.|++++|... .+|. .+..+++|++|+++++
T Consensus 165 ~~~-~-~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 165 YCT-D-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CGG-G-GHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSS
T ss_pred CHH-H-hhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCC
Confidence 221 2 33455555 89999999 8888766656668999999999865 5554 4578999999999843
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.2e-20 Score=167.71 Aligned_cols=213 Identities=16% Similarity=0.115 Sum_probs=148.1
Q ss_pred CCCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 2 PSSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 2 ~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
.++.|+.+ |.++.++++|++|++++|.+....|..+.++++|++|+ ++.+.. .+..++.+++|++|++++|. .
T Consensus 41 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--i 117 (606)
T 3t6q_A 41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV-LTANPLIFMAETALSGPKALKHLFFIQTG--I 117 (606)
T ss_dssp TTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE-CTTCCCSEECTTTTSSCTTCCEEECTTSC--C
T ss_pred cCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeee-CCCCcccccChhhhcccccccEeeccccC--c
Confidence 35677777 45688888888888887777766777888888888888 888766 46668888888888888885 3
Q ss_pred ccchhHhhhccCCCCeEEeeeccchhHHHHhh--ccccCCCCCCceEEeeecccCCCCchhhhcCCCCc--eEEeccCCc
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMWQITRMI--LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE--VLKLKQNSY 153 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~--~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~ 153 (252)
....+..+..+++|++|++.+ +.+.. + |.+..+ ++|+.|++++|.+....+..++.+++|+ .|++++|.+
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~~-n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLGS-NHISS----IKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECCS-SCCCC----CCCCTTCCC-TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccCCcchhccCCcccEEECCC-Ccccc----cCcccccCC-cccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 333356677888888888888 44433 3 444456 8888888888888766677777777777 666666554
Q ss_pred cCcee--------------------------------------------------------------------------e
Q 036414 154 FERKL--------------------------------------------------------------------------A 159 (252)
Q Consensus 154 ~~~~~--------------------------------------------------------------------------~ 159 (252)
..... .
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 32110 0
Q ss_pred ecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 160 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 160 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
.. +..+++|++|++++|. ++++|..++.+++|++|++++|...+..|..+..+++|++|+++++
T Consensus 272 ~~-~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 272 NT-FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp TT-TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred HH-hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 01 3346677777777776 6677666677777777777777655433445566666666666655
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=6.4e-20 Score=152.22 Aligned_cols=207 Identities=18% Similarity=0.224 Sum_probs=132.5
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
.++.++.+| ++..+++|++|++++|.+.. ++. +..+++|++|+ ++.+.. .+..+..+++|++|++++|. ..
T Consensus 96 ~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~-l~~n~~~~~~~~~~~l~~L~~L~l~~~~---~~ 168 (347)
T 4fmz_A 96 GTNKITDIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLN-LGANHNLSDLSPLSNMTGLNYLTVTESK---VK 168 (347)
T ss_dssp CSSCCCCCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEE-CTTCTTCCCCGGGTTCTTCCEEECCSSC---CC
T ss_pred cCCcccCch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEE-CCCCCCcccccchhhCCCCcEEEecCCC---cC
Confidence 356677765 47788888888888666543 333 67777777777 666643 44446667777777777664 22
Q ss_pred chhHhhhccCCCCeEEeeeccchhH---H---HHh------------hccccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQ---I---TRM------------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLP 141 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~---~---~~l------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 141 (252)
.++. +..+++|++|++.+ +.+.. + .++ ++.+..+ ++|++|++++|.++...+ +..++
T Consensus 169 ~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~ 243 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNY-NQIEDISPLASLTSLHYFTAYVNQITDITPVANM-TRLNSLKIGNNKITDLSP--LANLS 243 (347)
T ss_dssp CCGG-GGGCTTCSEEECTT-SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCCEEECCSSCCCCCGG--GTTCT
T ss_pred Cchh-hccCCCCCEEEccC-CcccccccccCCCccceeecccCCCCCCchhhcC-CcCCEEEccCCccCCCcc--hhcCC
Confidence 2222 55566666666665 22211 0 000 1224455 777777777777764333 66777
Q ss_pred CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceee
Q 036414 142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE 221 (252)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 221 (252)
+|++|++++|.+... . . ...+++|++|++++|. +++++. +..+++|+.|++++|...+..+..+..+++|++|+
T Consensus 244 ~L~~L~l~~n~l~~~--~-~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--N-A-VKDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TCCEEECCSSCCCCC--G-G-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCEEECCCCccCCC--h-h-HhcCCCcCEEEccCCc-cCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 778888777766542 1 2 5577788888888887 776643 66778888888888876655566677788888888
Q ss_pred cccCC
Q 036414 222 LHWPQ 226 (252)
Q Consensus 222 l~~~~ 226 (252)
+++++
T Consensus 318 L~~n~ 322 (347)
T 4fmz_A 318 LSQNH 322 (347)
T ss_dssp CCSSS
T ss_pred ccCCc
Confidence 88775
No 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=7.6e-21 Score=155.79 Aligned_cols=207 Identities=20% Similarity=0.179 Sum_probs=161.1
Q ss_pred cchHHH-------hhccccEEEecCCCCCCCCCccc--CCCCCCcEecccCCCCC--chhhcCCC-----CCccEEEeec
Q 036414 9 SSEDIW-------MMQKLMHLNFGSITLPAPPKNYS--SSLKNLIFISALHPSSC--TPDILSRL-----PTVQTLRISG 72 (252)
Q Consensus 9 lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~~l~~~~~--~~~~l~~l-----~~L~~L~l~~ 72 (252)
+|..+. .+++|++|++++|.+....|..+ ..+++|++|+ ++.+.. .|..++.+ ++|++|++++
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN-LRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEE-EESCBCSSSSSHHHHHHTTCCTTCCEEEEES
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEE-ccCCCCcchhHHHHHHHHhhcCCCcEEEeeC
Confidence 566555 78999999999888887788876 8999999999 888876 44445554 9999999999
Q ss_pred cCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccc--cCCCCCCceEEeeecccCCC---CchhhhcCCCCceEE
Q 036414 73 DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSE--YKFPPSLTQLSLSNTELIED---PMPTLEKLPHLEVLK 147 (252)
Q Consensus 73 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~~L~~l~l~~~~~~~~---~~~~l~~~~~L~~L~ 147 (252)
|. .....+..+..+++|++|++++|.-.+.. .+.+.+ ..+ ++|++|++++|.++.. ....+..+++|++|+
T Consensus 159 N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 159 AH--SLNFSCEQVRVFPALSTLDLSDNPELGER-GLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp CS--CCCCCTTTCCCCSSCCEEECCSCTTCHHH-HHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred CC--CccchHHHhccCCCCCEEECCCCCcCcch-HHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 96 55555578899999999999994322210 002233 777 9999999999998732 123346789999999
Q ss_pred eccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 148 LKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+++|.+.+...... ...+++|++|++++|. ++.++.... ++|+.|++++|... .+|. +..+++|++|++++.+
T Consensus 235 Ls~N~l~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 235 LSHNSLRDAAGAPS-CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTSCCCSSCCCSC-CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCcCCcccchhh-hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCC
Confidence 99999877542223 5568999999999999 888877665 89999999999875 4576 7889999999999875
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.5e-20 Score=161.53 Aligned_cols=208 Identities=18% Similarity=0.119 Sum_probs=170.5
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
+..++++|..+. +++++|++++|.+....+..+.++++|++|+ ++.+.+ .+..+..+++|++|++++|. ...
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~-Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~ 137 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQ-LGRNSIRQIEVGAFNGLASLNTLELFDNW--LTV 137 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSSC--CSB
T ss_pred CCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEE-CCCCccCCcChhhccCcccCCEEECCCCc--CCc
Confidence 356788887654 6899999998888777788899999999999 998877 45668899999999999995 443
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeec-ccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNT-ELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
..+..+..+++|++|++++ +.+.. ++ .+..+ ++|++|++++| .+....+..+..+++|+.|++++|.+...
T Consensus 138 ~~~~~~~~l~~L~~L~L~~-N~l~~----~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRN-NPIES----IPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CCTTTSSSCTTCCEEECCS-CCCCE----ECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred cChhhhcccCCCCEEECCC-CCcce----eCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 3345578899999999999 55655 55 56777 99999999985 44444455788999999999999988763
Q ss_pred eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+ . ...+++|+.|++++|. ++++ +..+..+++|+.|++++|......+..+..+++|++|+++++.
T Consensus 212 --~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 212 --P-N-LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp --C-C-CTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred --c-c-ccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 2 3 6789999999999999 8776 5668899999999999998766556677889999999999874
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1e-20 Score=162.48 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=78.9
Q ss_pred ccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccc
Q 036414 112 EYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAM 190 (252)
Q Consensus 112 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l 190 (252)
+..+ ++|++|++++|.+....+..++.+++|++|++++|.+.+.. ... +.++++|++|++++|. ++.+ +..++.+
T Consensus 295 ~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 370 (455)
T 3v47_A 295 FSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRM-FENLDKLEVLDLSYNH-IRALGDQSFLGL 370 (455)
T ss_dssp TTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGG-GTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred cccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhH-hcCcccCCEEECCCCc-ccccChhhcccc
Confidence 4445 67777777777776666667777777788888777664422 223 5678888888888888 7766 5567788
Q ss_pred ccccceeeccCCCCCCChH-HHHhccccceeecccCC
Q 036414 191 PKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 191 ~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~ 226 (252)
++|+.|++++|.... +|. .+..+++|++|++++++
T Consensus 371 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 371 PNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ccccEEECCCCcccc-CCHhHhccCCcccEEEccCCC
Confidence 899999999887654 544 45788999999998653
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=160.32 Aligned_cols=208 Identities=18% Similarity=0.152 Sum_probs=170.2
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
+..++++|..+. +++++|++++|.+....+..+.++++|++|+ ++.+.+ .+..+..+++|++|++++|. ...
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~-Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~ 126 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQ-LSRNHIRTIEIGAFNGLANLNTLELFDNR--LTT 126 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEE-CCSSCCCEECGGGGTTCSSCCEEECCSSC--CSS
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEE-CCCCcCCccChhhccCCccCCEEECCCCc--CCe
Confidence 356788888765 6899999998888777778899999999999 998877 45668899999999999995 333
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeec-ccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNT-ELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
..+..+..+++|++|++.+ +.+.. ++ .+..+ ++|++|++++| .+....+..+..+++|+.|++++|.+...
T Consensus 127 ~~~~~~~~l~~L~~L~L~~-N~i~~----~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRN-NPIES----IPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp CCTTTSCSCSSCCEEECCS-CCCCE----ECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred eCHhHhhccccCceeeCCC-Ccccc----cCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 3344688999999999999 65655 55 57777 99999999985 44444456788999999999999988753
Q ss_pred eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+ . ...+++|++|++++|. ++.+ +..+..+++|+.|++++|......+..+..+++|++|+++++.
T Consensus 201 --~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 201 --P-N-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp --C-C-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred --c-c-cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 2 3 6789999999999998 8877 5678889999999999998765556667889999999999874
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=3.5e-20 Score=159.18 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=52.6
Q ss_pred CCCcccc-chHHHhhccccEEEecCCCCCCCC-CcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
++.++.+ |.++.++++|++|++++|.....+ +..+.++++|++|+ ++.+.. .+..++.+++|++|++++|. .
T Consensus 39 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l 115 (455)
T 3v47_A 39 LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK-LDYNQFLQLETGAFNGLANLEVLTLTQCN--L 115 (455)
T ss_dssp SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE-CTTCTTCEECTTTTTTCTTCCEEECTTSC--C
T ss_pred CCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe-CCCCccCccChhhccCcccCCEEeCCCCC--C
Confidence 3555555 445666666666666655544333 34466666666666 666554 34456666666666666664 3
Q ss_pred ccchhHh--hhccCCCCeEEeee
Q 036414 78 HSGVSKS--LCELHKLECLKLAN 98 (252)
Q Consensus 78 ~~~~~~~--l~~l~~L~~L~l~~ 98 (252)
....+.. +..+++|++|++++
T Consensus 116 ~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 116 DGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp BTHHHHSSTTTTCTTCCEEECCS
T ss_pred CccccCcccccCcccCCEEECCC
Confidence 3333333 55566666666655
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=156.47 Aligned_cols=209 Identities=17% Similarity=0.117 Sum_probs=165.5
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++++|.++. ++|++|++++|.+....+..+.++++|++|+ ++.+.. .+..++.+++|++|++++|. . .
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l-~ 113 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALV-LTSNGINTIEEDSFSSLGSLEHLDLSYNY--L-S 113 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCCEECTTTTTTCTTCCEEECCSSC--C-S
T ss_pred CCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEE-CCCCccCccCHhhcCCCCCCCEEECCCCc--C-C
Confidence 567889998765 4899999998887665555799999999999 988877 45568899999999999995 3 3
Q ss_pred chhH-hhhccCCCCeEEeeeccchhHHHHhhcc---ccCCCCCCceEEeeec-ccCCCCchhhhcCCCCceEEeccCCcc
Q 036414 80 GVSK-SLCELHKLECLKLANQGKMWQITRMILS---EYKFPPSLTQLSLSNT-ELIEDPMPTLEKLPHLEVLKLKQNSYF 154 (252)
Q Consensus 80 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~ 154 (252)
.++. .+..+++|++|++.+ +.+.. +|. +..+ ++|++|++++| .+....+..++.+++|++|++++|.+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~-n~l~~----l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLG-NPYKT----LGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTT-CCCSS----SCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred cCCHhHhCCCccCCEEECCC-CCCcc----cCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 4544 488999999999998 55555 553 6677 99999999998 466556678899999999999999876
Q ss_pred CceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCCC---------------------------
Q 036414 155 ERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRK--------------------------- 206 (252)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~--------------------------- 206 (252)
... +.. ...+++|++|++++|. +..++.. .+.+++|+.|++++|.....
T Consensus 188 ~~~-~~~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 188 SYE-PKS-LKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp EEC-TTT-TTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred ccC-HHH-HhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 532 223 6789999999999999 7766543 34588999999999876541
Q ss_pred ----ChHHHHhccccceeecccCC
Q 036414 207 ----LPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 207 ----~p~~l~~l~~L~~L~l~~~~ 226 (252)
+|..+..+++|++|+++++.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSC
T ss_pred chhhhHHHHhcccCCCEEECCCCC
Confidence 34556778889999988774
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=5.9e-20 Score=163.20 Aligned_cols=213 Identities=19% Similarity=0.136 Sum_probs=110.8
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccC-------------------------CCCCCcEecccCCCCC--c
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSS-------------------------SLKNLIFISALHPSSC--T 55 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~-------------------------~l~~L~~L~~l~~~~~--~ 55 (252)
++.++++|..+..+++|++|++++|.+....|..+. .+++|++|+ ++.+.. .
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~-l~~n~l~~~ 365 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD-LSHDDIETS 365 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE-CCSSCCCEE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE-CCCCccccc
Confidence 455566666666666666666665554433333444 444455554 444443 1
Q ss_pred ---hhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccC
Q 036414 56 ---PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELI 130 (252)
Q Consensus 56 ---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~ 130 (252)
+..++.+++|++|++++|. .....+..+..+++|++|++.+ +.+... .+ .+..+ ++|++|++++|.+.
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~~l-~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAF-TRLKVK---DAQSPFQNL-HLLKVLNLSHSLLD 438 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTT-CCEECC---TTCCTTTTC-TTCCEEECTTCCCB
T ss_pred cCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCC-CcCCCc---ccchhhhCc-ccCCEEECCCCccC
Confidence 3334555555555555554 3333344555556666666655 222110 12 24555 66777777766666
Q ss_pred CCCchhhhcCCCCceEEeccCCccCceee--ecCCCCCccccEEEecCCccccce-------------------------
Q 036414 131 EDPMPTLEKLPHLEVLKLKQNSYFERKLA--CVGCSSFPQLKILHLKSMLWLEEW------------------------- 183 (252)
Q Consensus 131 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~------------------------- 183 (252)
...+..++.+++|++|++++|.+.+..+. .. ...+++|++|++++|. ++++
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCccCcCC
Confidence 55566666666666666666655432211 11 2344444444444444 3333
Q ss_pred eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 184 TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 184 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+..++.+++| .|++++|......|..+..+++|+++++++++
T Consensus 517 ~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred hhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 2333444445 55555555444445556667777777777654
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=3.2e-20 Score=150.08 Aligned_cols=192 Identities=19% Similarity=0.148 Sum_probs=159.7
Q ss_pred CCCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCC-C---chhhcCCCCCccEEEeeccCCc
Q 036414 2 PSSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSS-C---TPDILSRLPTVQTLRISGDLSH 76 (252)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~-~---~~~~l~~l~~L~~L~l~~~~~~ 76 (252)
.++.++.+|. .+..+++|++|++++|.+....+..+..+++|++|+ ++.+. . .+..+..+++|++|++++|.
T Consensus 40 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-- 116 (285)
T 1ozn_A 40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD-LSDNAQLRSVDPATFHGLGRLHTLHLDRCG-- 116 (285)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSCTTCCCCCTTTTTTCTTCCEEECTTSC--
T ss_pred eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe-CCCCCCccccCHHHhcCCcCCCEEECCCCc--
Confidence 3577888875 589999999999998877766688899999999999 88886 4 36678899999999999996
Q ss_pred cccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCcc
Q 036414 77 YHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154 (252)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 154 (252)
.....+..+..+++|++|++.+ +.+.. ++ .+..+ ++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 117 l~~~~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 117 LQELGPGLFRGLAALQYLYLQD-NALQA----LPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEECHhHhhCCcCCCEEECCC-Ccccc----cCHhHhccC-CCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 5555567788999999999999 55645 45 46777 99999999999998666677889999999999999876
Q ss_pred CceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCC
Q 036414 155 ERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~ 205 (252)
.... .. +..+++|+.|++++|. +++++. .++.+++|+.|++++|+...
T Consensus 191 ~~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 191 HVHP-HA-FRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp EECT-TT-TTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccCH-hH-ccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCccC
Confidence 5322 23 6789999999999998 887754 37889999999999998654
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.3e-20 Score=163.42 Aligned_cols=215 Identities=20% Similarity=0.228 Sum_probs=162.6
Q ss_pred CCCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCcc
Q 036414 2 PSSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~ 77 (252)
.++.++.+|. +++.+++|++|++++|.+....|..++++++|++|+ ++.+.+ ++.. ++.+++|++|++++|. .
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~--l 159 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV-LERNDLSSLPRGIFHNTPKLTTLSMSNNN--L 159 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE-eeCCCCCCCCHHHhccCCCCCEEEeeCCc--C
Confidence 3566777765 678888888888887777666666678888888888 777766 4444 4778888888888775 4
Q ss_pred ccchhHhhhccCCCCeEEeeeccchh-----HHHHh--------------------------------------------
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMW-----QITRM-------------------------------------------- 108 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~l-------------------------------------------- 108 (252)
....+..+..+++|+.|++++| .+. .+.+|
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~ 238 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 238 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEE
T ss_pred CCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEE
Confidence 4444556677777777777663 221 10000
Q ss_pred --------hccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccc
Q 036414 109 --------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWL 180 (252)
Q Consensus 109 --------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 180 (252)
.+++..+ ++|+.|++++|.+....|..++.+++|+.|++++|.+.. ++.. ...+++|+.|++++|. +
T Consensus 239 L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~-~~~l~~L~~L~Ls~N~-l 313 (597)
T 3oja_B 239 LQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSHNH-L 313 (597)
T ss_dssp CCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECS-SSCCTTCCEEECCSSC-C
T ss_pred CCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcc-cccCCCCcEEECCCCC-C
Confidence 1235566 899999999999987788899999999999999998876 3434 6679999999999999 8
Q ss_pred cceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCCHH
Q 036414 181 EEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPE 228 (252)
Q Consensus 181 ~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 228 (252)
..++..++.+++|+.|++++|... .++ +..+++|+.|++++++..
T Consensus 314 ~~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 314 LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEE
T ss_pred CccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEEEeeCCCCC
Confidence 889888889999999999999875 444 567899999999998843
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.2e-20 Score=168.70 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=73.9
Q ss_pred CCCccccch--HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCC-ccEEEeeccCCcc
Q 036414 3 SSYIDHSSE--DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPT-VQTLRISGDLSHY 77 (252)
Q Consensus 3 ~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~-L~~L~l~~~~~~~ 77 (252)
++.++.+|. .++++++|++|++++|.+...+| .+..+++|++|+ ++.+.. +|..++.+++ |++|++++|.
T Consensus 314 ~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~-L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~--- 388 (636)
T 4eco_A 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN-LAYNQITEIPANFCGFTEQVENLSFAHNK--- 388 (636)
T ss_dssp SSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE-CCSSEEEECCTTSEEECTTCCEEECCSSC---
T ss_pred CCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE-CCCCccccccHhhhhhcccCcEEEccCCc---
Confidence 456666666 66777777777777666554555 566666666666 665554 4555555666 6666666663
Q ss_pred ccchhHhhhccC--CCCeEEeeeccch-hHHHHhhc-ccc-------CCCCCCceEEeeecccCCCCchhhhcCCCCceE
Q 036414 78 HSGVSKSLCELH--KLECLKLANQGKM-WQITRMIL-SEY-------KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVL 146 (252)
Q Consensus 78 ~~~~~~~l~~l~--~L~~L~l~~~~~~-~~~~~l~~-~~~-------~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 146 (252)
...+|..+..+. +|+.|++++ +.+ +. .| .+. .+ ++|++|++++|.++..+...+..+++|+.|
T Consensus 389 l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~~----~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 389 LKYIPNIFDAKSVSVMSAIDFSY-NEIGSV----DGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp CSSCCSCCCTTCSSCEEEEECCS-SCTTTT----TTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred CcccchhhhhcccCccCEEECcC-CcCCCc----chhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 224444443332 555555555 222 21 22 233 33 455555555555543333333344455555
Q ss_pred EeccCCc
Q 036414 147 KLKQNSY 153 (252)
Q Consensus 147 ~l~~~~~ 153 (252)
++++|.+
T Consensus 463 ~Ls~N~l 469 (636)
T 4eco_A 463 NLMGNML 469 (636)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 5544443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=3.5e-19 Score=147.78 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=127.5
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
.++.+..+|. +..+++|++|++++|.+. .++. +..+++|++|+ ++.+.. .++.++.+++|++|++++|. ...
T Consensus 52 ~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~-L~~n~i~~~~~~~~l~~L~~L~l~~n~---i~~ 124 (347)
T 4fmz_A 52 AGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLY-IGTNKITDISALQNLTNLRELYLNEDN---ISD 124 (347)
T ss_dssp CSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEE-CCSSCCCCCGGGTTCTTCSEEECTTSC---CCC
T ss_pred eCCccccchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEE-ccCCcccCchHHcCCCcCCEEECcCCc---ccC
Confidence 3566677764 777888888888866554 3444 77888888888 777766 44567778888888888774 333
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee-
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA- 159 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 159 (252)
++. +..+++|+.|++.++..... ++.+..+ ++|+++++++|.+....+ ++.+++|++|++++|.+......
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~ 196 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANHNLSD----LSPLSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA 196 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCTTCCC----CGGGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGG
T ss_pred chh-hccCCceeEEECCCCCCccc----ccchhhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccccc
Confidence 333 66777777777777433333 3345555 666666666665553222 45556666666655544331110
Q ss_pred ------------------ecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceee
Q 036414 160 ------------------CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE 221 (252)
Q Consensus 160 ------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 221 (252)
.. ...+++|++|++++|. ++.++. ...+++|+.|++++|... .++ .+..+++|++|+
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~ 271 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLN 271 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEE
T ss_pred CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccC-CCh-hHhcCCCcCEEE
Confidence 01 2345667777777776 665554 666777777777777654 333 456677777777
Q ss_pred cccCC
Q 036414 222 LHWPQ 226 (252)
Q Consensus 222 l~~~~ 226 (252)
++++.
T Consensus 272 l~~n~ 276 (347)
T 4fmz_A 272 VGSNQ 276 (347)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 77664
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.6e-19 Score=148.86 Aligned_cols=209 Identities=17% Similarity=0.170 Sum_probs=165.2
Q ss_pred CCCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 2 PSSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 2 ~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
.++.++.+ |.++..+++|++|++++|.+. .+|..+. ++|++|+ ++.+.. .+..+..+++|+.|++++|.-..
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 84 INNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR-VHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE-CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE-CCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 45778888 778999999999999977765 5665544 7899999 888876 44558899999999999996222
Q ss_pred ccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 156 (252)
....+..+..+++|++|++.+ +.+.. +| .+ . ++|++|++++|.++...+..+..+++|+.|++++|.+...
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~-n~l~~----l~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIAD-TNITT----IPQGL--P-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCS-SCCCS----CCSSC--C-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred cCcChhhccCCCCcCEEECCC-Ccccc----CCccc--c-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 235567788999999999998 55555 55 22 2 8999999999999877788899999999999999887653
Q ss_pred eeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChH-HH------HhccccceeecccCC
Q 036414 157 KLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-EL------WRIKSLCKLELHWPQ 226 (252)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~l------~~l~~L~~L~l~~~~ 226 (252)
... . +..+++|++|++++|+ ++.++..+..+++|+.|++++|.... ++. .+ ...++++.+++.+.+
T Consensus 232 ~~~-~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 232 DNG-S-LANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CTT-T-GGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred Chh-h-ccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCc
Confidence 221 2 5678999999999998 88888888899999999999998653 332 11 124788899998876
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=5.6e-20 Score=151.83 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccccccccee
Q 036414 118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLI 197 (252)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 197 (252)
+|++|++++|.++...+..+..+++|+.|++++|.+...... . +..+++|++|++++|+ ++.++..++.+++|+.|+
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-S-LSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-G-GGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-H-hhCCCCCCEEECCCCc-CeecChhhhcCccCCEEE
Confidence 444444444444444444445555555555555544332111 1 3345555555555555 555555455555555555
Q ss_pred eccCCC
Q 036414 198 LNPCAY 203 (252)
Q Consensus 198 l~~~~~ 203 (252)
+++|..
T Consensus 271 l~~N~l 276 (332)
T 2ft3_A 271 LHTNNI 276 (332)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 555543
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=3.4e-20 Score=164.76 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=52.1
Q ss_pred CCCceEEeeecccCC-CCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccccccc
Q 036414 117 PSLTQLSLSNTELIE-DPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLE 194 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~ 194 (252)
++|++|++++|.+.+ ..+..++.+++|+.|++++|.+.+... .. +.++++|++|++++|+ +.++ +..++.+++|+
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GV-FDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TT-TTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCC
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hh-hcccccCCEEECCCCc-CCCcCHHHccCCCcCC
Confidence 444444444444432 133334444445555554444432111 12 3455555555555555 4443 44455566666
Q ss_pred ceeeccCCCCCCChHHHHhcc-ccceeecccCC
Q 036414 195 SLILNPCAYLRKLPEELWRIK-SLCKLELHWPQ 226 (252)
Q Consensus 195 ~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~ 226 (252)
.|++++|... .+|..+..++ +|+++++.+++
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 6666666543 4555555554 46666666543
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.7e-19 Score=143.54 Aligned_cols=185 Identities=22% Similarity=0.233 Sum_probs=87.7
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccccc
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
+.++.+|..+. .++++|++++|.+....+..+..+++|++|+ ++.+.. ++.. +..+++|++|++++|. ....
T Consensus 26 ~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l~~~ 100 (270)
T 2o6q_A 26 KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY-LNDNKLQTLPAGIFKELKNLETLWVTDNK--LQAL 100 (270)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE-CCSSCCSCCCTTTTSSCTTCCEEECCSSC--CCCC
T ss_pred CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE-CCCCccCeeChhhhcCCCCCCEEECCCCc--CCcC
Confidence 34445554332 3455555554444433333455555555555 554443 2222 3445555555555553 2222
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL 158 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 158 (252)
.+..+..+++|++|++.+ +.+.. ++ .+..+ ++|++|++++|.+....+..++.+++|+.|++++|.+.....
T Consensus 101 ~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDR-NQLKS----LPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CTTTTTTCSSCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CHhHcccccCCCEEECCC-CccCe----eCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 223344555555555555 33322 22 23444 555555555555554444445555555555555554433211
Q ss_pred eecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCC
Q 036414 159 ACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCA 202 (252)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 202 (252)
. . +..+++|++|++++|+ ++.++.. ++.+++|+.|++++|+
T Consensus 175 ~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 G-A-FDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp T-T-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred h-H-hccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 1 1 3345555555555554 4444332 3445555555555554
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=5.9e-20 Score=168.24 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=144.8
Q ss_pred cchHHH--hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCC-C----chhhcCC-------CCCccEEEeeccC
Q 036414 9 SSEDIW--MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSS-C----TPDILSR-------LPTVQTLRISGDL 74 (252)
Q Consensus 9 lp~~i~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~-~----~~~~l~~-------l~~L~~L~l~~~~ 74 (252)
+|.+++ ++++|++|++++|.+...+|..+.++++|++|+ ++.+. + +|..++. +++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~-Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN-IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE-CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE-CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 899877 999999999998988889999999999999999 98887 3 4554544 4599999999995
Q ss_pred CccccchhH--hhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCC-CceEEeccC
Q 036414 75 SHYHSGVSK--SLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPH-LEVLKLKQN 151 (252)
Q Consensus 75 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 151 (252)
. ..+|. .+..+++|+.|++++ +.+.. +|.+..+ ++|+.|++++|.+. ..|..+..+++ |+.|++++|
T Consensus 560 --L-~~ip~~~~l~~L~~L~~L~Ls~-N~l~~----lp~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 560 --L-EEFPASASLQKMVKLGLLDCVH-NKVRH----LEAFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp --C-CBCCCHHHHTTCTTCCEEECTT-SCCCB----CCCCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred --C-CccCChhhhhcCCCCCEEECCC-CCccc----chhhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 3 37888 899999999999998 55556 7777777 89999999999888 67777888888 999999888
Q ss_pred CccCceeeecCCCCCccccEEEecCCccccce-e---cccc--ccccccceeeccCCCCCCChHHH-Hhccccceeeccc
Q 036414 152 SYFERKLACVGCSSFPQLKILHLKSMLWLEEW-T---MGAG--AMPKLESLILNPCAYLRKLPEEL-WRIKSLCKLELHW 224 (252)
Q Consensus 152 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~---~~~~--~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~ 224 (252)
.+......+. ....++|+.|++++|. +... + ...+ .+++|+.|++++|... .+|..+ ..+++|+.|++++
T Consensus 630 ~L~~lp~~~~-~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 630 KLKYIPNIFN-AKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CCCSCCSCCC-TTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCCcCchhhh-ccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 7763221111 1222347777777666 4321 1 1111 2235566666665543 455443 2455555555554
Q ss_pred C
Q 036414 225 P 225 (252)
Q Consensus 225 ~ 225 (252)
+
T Consensus 707 N 707 (876)
T 4ecn_A 707 N 707 (876)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=2e-19 Score=164.77 Aligned_cols=206 Identities=12% Similarity=0.107 Sum_probs=104.1
Q ss_pred cchHHHhhc-------cccEEEecCCCCCCCCCc--ccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcc
Q 036414 9 SSEDIWMMQ-------KLMHLNFGSITLPAPPKN--YSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 9 lp~~i~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
+|..++++. +|++|++++|.+. .+|. .+.++++|+.|+ ++.|.+ +| .++.+++|+.|++++|.
T Consensus 533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~-Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~--- 606 (876)
T 4ecn_A 533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD-CVHNKVRHLE-AFGTNVKLTDLKLDYNQ--- 606 (876)
T ss_dssp HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE-CTTSCCCBCC-CCCTTSEESEEECCSSC---
T ss_pred chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE-CCCCCcccch-hhcCCCcceEEECcCCc---
Confidence 555555554 5666666655544 4555 555556666665 555544 33 45555555555555553
Q ss_pred ccchhHhhhccCC-CCeEEeeeccchhHH------------HHh----------hccc----c--CCCCCCceEEeeecc
Q 036414 78 HSGVSKSLCELHK-LECLKLANQGKMWQI------------TRM----------ILSE----Y--KFPPSLTQLSLSNTE 128 (252)
Q Consensus 78 ~~~~~~~l~~l~~-L~~L~l~~~~~~~~~------------~~l----------~~~~----~--~~~~~L~~l~l~~~~ 128 (252)
...+|..+..+++ |+.|++++ +.+..+ +.| +|.+ . .. ++|+.|++++|.
T Consensus 607 l~~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~-~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 607 IEEIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG-INASTVTLSYNE 684 (876)
T ss_dssp CSCCCTTSCEECTTCCEEECCS-SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC-CCEEEEECCSSC
T ss_pred cccchHHHhhccccCCEEECcC-CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC-CCcCEEEccCCc
Confidence 2245555555555 55555555 222120 000 1211 1 11 356666666666
Q ss_pred cCCCCchhhhcCCCCceEEeccCCccCceeeec-C----CCCCccccEEEecCCccccceecccc--ccccccceeeccC
Q 036414 129 LIEDPMPTLEKLPHLEVLKLKQNSYFERKLACV-G----CSSFPQLKILHLKSMLWLEEWTMGAG--AMPKLESLILNPC 201 (252)
Q Consensus 129 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~----~~~~~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L~l~~~ 201 (252)
+...+...+..+++|+.|++++|.+........ + ..++++|+.|++++|+ ++.++.... .+++|+.|++++|
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSS
T ss_pred CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCC
Confidence 663333333466777777776666542111100 0 0122366666666665 555555444 5666666666666
Q ss_pred CCCCCChHHHHhccccceeeccc
Q 036414 202 AYLRKLPEELWRIKSLCKLELHW 224 (252)
Q Consensus 202 ~~~~~~p~~l~~l~~L~~L~l~~ 224 (252)
.... +|..+..+++|+.|++++
T Consensus 764 ~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 764 CFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CCSS-CCCGGGGCTTCCEEECCC
T ss_pred CCCc-cchhhhcCCCCCEEECCC
Confidence 5443 555555566666666543
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=1.6e-19 Score=146.40 Aligned_cols=195 Identities=19% Similarity=0.214 Sum_probs=122.5
Q ss_pred HhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414 14 WMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK 90 (252)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (252)
.+++++++++++++.+. .+|..+. ++++.|+ ++.+.+ .+..+..+++|++|++++|. ...++.. ..+++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILH-LSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVD-GTLPV 78 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEE-CTTSCCSEEEGGGGTTCTTCCEEECTTSC---CCEEECC-SCCTT
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEE-cCCCcCCccCHHHhhcCCCCCEEECCCCc---cCcccCC-CCCCc
Confidence 44556777777754443 4554443 5677777 666665 34456677777777777774 2333322 56677
Q ss_pred CCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414 91 LECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169 (252)
Q Consensus 91 L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 169 (252)
|++|++++ +.+.. +| .+..+ ++|++|++++|+++...+..++.+++|+.|++++|.+...... . +..+++|
T Consensus 79 L~~L~Ls~-N~l~~----l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L 150 (290)
T 1p9a_G 79 LGTLDLSH-NQLQS----LPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-L-LTPTPKL 150 (290)
T ss_dssp CCEEECCS-SCCSS----CCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-T-TTTCTTC
T ss_pred CCEEECCC-CcCCc----CchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-h-cccccCC
Confidence 77777776 55555 56 55566 7777777777777765556677777777777777766542221 2 4566777
Q ss_pred cEEEecCCccccceecc-ccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 170 KILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 170 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+.|++++|+ ++.++.. +..+++|+.|++++|... .+|.++...++|+.+++.+++
T Consensus 151 ~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 EKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 777777777 6666543 355677777777776653 566666666677777776544
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.6e-19 Score=149.05 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=122.2
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccc
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
+.++++|..+. ++|++|++++|.+....+..+.++++|++|+ ++.+.. .+..++.+++|++|++++|. ...
T Consensus 43 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~ 116 (332)
T 2ft3_A 43 LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALV-LVNNKISKIHEKAFSPLRKLQKLYISKNH---LVE 116 (332)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECGGGSTTCTTCCEEECCSSC---CCS
T ss_pred CCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEE-CCCCccCccCHhHhhCcCCCCEEECCCCc---CCc
Confidence 45555665442 4566666665555444444566666666666 655554 34456666666666666663 223
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCC--CCchhhhc-----------------
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIE--DPMPTLEK----------------- 139 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~----------------- 139 (252)
+|..+. ++|++|++.+ +.+.. ++ .+..+ ++|+.|++++|.++. ..+..+..
T Consensus 117 l~~~~~--~~L~~L~l~~-n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHD-NRIRK----VPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCSSCC--TTCCEEECCS-SCCCC----CCSGGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred cCcccc--ccCCEEECCC-CccCc----cCHhHhCCC-ccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 333322 4555555555 33322 23 23444 555555555554421 12222221
Q ss_pred ---CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCCCChHHHHhcc
Q 036414 140 ---LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWRIK 215 (252)
Q Consensus 140 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 215 (252)
.++|++|++++|.+..... .. +..+++|++|++++|. ++.++. .++.+++|+.|++++|... .+|..+..++
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~-~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIEL-ED-LLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCT-TS-STTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred ccccCCCCEEECCCCcCCccCH-HH-hcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 1467777777666654322 23 5678889999999888 776643 5678888999999888765 7888788888
Q ss_pred ccceeecccCC
Q 036414 216 SLCKLELHWPQ 226 (252)
Q Consensus 216 ~L~~L~l~~~~ 226 (252)
+|++|+++++.
T Consensus 265 ~L~~L~l~~N~ 275 (332)
T 2ft3_A 265 LLQVVYLHTNN 275 (332)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCC
Confidence 99999888764
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=1.1e-19 Score=161.52 Aligned_cols=210 Identities=20% Similarity=0.121 Sum_probs=128.3
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc--
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG-- 80 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~-- 80 (252)
+.++.+| .+..+++|++|++++|.+ ..+|. + .+++|++|+ ++.+.. ....++.+++|++|++++|. ....
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~-l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~~~~ 367 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLT-LTMNKGSISFKKVALPSLSYLDLSRNA--LSFSGC 367 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEE-EESCSSCEECCCCCCTTCCEEECCSSC--EEEEEE
T ss_pred ccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceee-ccCCcCccchhhccCCCCCEEECcCCc--cCCCcc
Confidence 3445555 555666666666665555 44552 3 555566655 554422 22234445555555555553 1111
Q ss_pred hhHhhhccCCCCeEEeeec----------------------cchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchh
Q 036414 81 VSKSLCELHKLECLKLANQ----------------------GKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPT 136 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~----------------------~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~ 136 (252)
.+..+..+++|++|++++| +.+... .+ .+..+ ++|++|++++|.+....+..
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV---TEFSAFLSL-EKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST---TTTTTTTTC-TTCCEEECTTSCCEECCTTT
T ss_pred hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc---cChhhhhcc-ccCCEEECcCCCCCccchhh
Confidence 1344444444555544442 222110 12 34555 77777777777776666677
Q ss_pred hhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhcc
Q 036414 137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIK 215 (252)
Q Consensus 137 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 215 (252)
++.+++|++|++++|.+.+...+.. ++.+++|++|++++|. ++++ +..++.+++|+.|++++|...+..|..+..++
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 7777788888887777665434434 6778888888888887 6665 45567888888888888877665577788888
Q ss_pred ccceeecccCC
Q 036414 216 SLCKLELHWPQ 226 (252)
Q Consensus 216 ~L~~L~l~~~~ 226 (252)
+|++|+++++.
T Consensus 522 ~L~~L~l~~N~ 532 (606)
T 3vq2_A 522 SLSTLDCSFNR 532 (606)
T ss_dssp TCCEEECTTSC
T ss_pred cCCEEECCCCc
Confidence 88888888774
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=3.1e-19 Score=140.62 Aligned_cols=204 Identities=17% Similarity=0.115 Sum_probs=159.5
Q ss_pred CccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCC-C--ch-hhcCCCCCccEEEeec-cCCcccc
Q 036414 5 YIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSS-C--TP-DILSRLPTVQTLRISG-DLSHYHS 79 (252)
Q Consensus 5 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~-~--~~-~~l~~l~~L~~L~l~~-~~~~~~~ 79 (252)
.++++|. +. .+|++|++++|.+....+..+.++++|++|+ ++.+. . ++ ..+..+++|++|++++ +. ...
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~-l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~ 95 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIY-VSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTY 95 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEE-EECCSSCCEECTTTEESCTTCCEEEEEEETT--CCE
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEe-CCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeE
Confidence 4777887 43 3899999998887665566789999999999 88886 5 33 3588899999999998 64 333
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCc---eEEeeec-ccCCCCchhhhcCCCCc-eEEeccCCcc
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLT---QLSLSNT-ELIEDPMPTLEKLPHLE-VLKLKQNSYF 154 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~ 154 (252)
..+..+..+++|++|++.+ +.+.. +|.+..+ ++|+ ++++++| .++...+..+..+++|+ .|++++|.+.
T Consensus 96 i~~~~f~~l~~L~~L~l~~-n~l~~----lp~~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFN-TGLKM----FPDLTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ECTTSEECCTTCCEEEEEE-ECCCS----CCCCTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred cCHHHhCCCCCCCEEeCCC-CCCcc----ccccccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 3345678899999999999 56656 6766666 7887 9999999 88866777789999999 9999998876
Q ss_pred CceeeecCCCCCccccEEEecCCccccceec-ccccc-ccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 155 ERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAM-PKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
. ++.. ....++|+.|++++|+.++.++. .++.+ ++|+.|++++|... .+|.. .+++|+.|++.++.
T Consensus 170 ~--i~~~-~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 170 S--VQGY-AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp E--ECTT-TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred c--cCHh-hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 3 2212 22338999999999955888754 46778 99999999998764 67654 68899999998764
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=9.8e-20 Score=157.87 Aligned_cols=205 Identities=17% Similarity=0.118 Sum_probs=150.9
Q ss_pred cccchHHHhhc----cccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccch
Q 036414 7 DHSSEDIWMMQ----KLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGV 81 (252)
Q Consensus 7 ~~lp~~i~~l~----~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (252)
..+|..+..+. +|++|++++|.+....|..+..+++|++|+ ++.|.+ ....++.+++|++|++++|. ...+
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---l~~l 95 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN-LSSNVLYETLDLESLSTLRTLDLNNNY---VQEL 95 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEE-CTTSCCEEEEECTTCTTCCEEECCSSE---EEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEE-eeCCCCCCCcccccCCCCCEEEecCCc---CCCC
Confidence 45677666555 789999998877776677888888999998 888877 22237888888888888874 2222
Q ss_pred hHh-----------------hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh-cCCC
Q 036414 82 SKS-----------------LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE-KLPH 142 (252)
Q Consensus 82 ~~~-----------------l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~ 142 (252)
+.. ...+++|+.|++++ +.+..+ .| .+..+ ++|++|++++|.++...+..+. .+++
T Consensus 96 ~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~-N~l~~~---~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN-NKITML---RDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp EECTTCCEEECCSSCCCCEEECCCSSCEEEECCS-SCCCSG---GGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CCCCCcCEEECcCCcCCCCCccccCCCCEEECCC-CCCCCC---CchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 210 01245566666666 334220 34 56666 8888888888888866666664 7888
Q ss_pred CceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeec
Q 036414 143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLEL 222 (252)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 222 (252)
|+.|++++|.+... . . ...+++|+.|++++|. ++.++..++.+++|+.|++++|... .+|..+..+++|+.|++
T Consensus 171 L~~L~Ls~N~l~~~--~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 171 LEHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCEEECTTSCCCEE--E-C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred ccEEecCCCccccc--c-c-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence 99999988887653 2 2 4468899999999998 8888777888999999999998865 57877788899999999
Q ss_pred ccCC
Q 036414 223 HWPQ 226 (252)
Q Consensus 223 ~~~~ 226 (252)
++++
T Consensus 245 ~~N~ 248 (487)
T 3oja_A 245 RGNG 248 (487)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 9876
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=6.7e-20 Score=150.49 Aligned_cols=207 Identities=16% Similarity=0.102 Sum_probs=145.3
Q ss_pred CccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchh
Q 036414 5 YIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVS 82 (252)
Q Consensus 5 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (252)
.+.+.+.. +..+++|++|++++|.+....|..+..+++|++|+ ++.+.. ....++.+++|++|++++|. ...++
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~l~~L~~L~Ls~n~---l~~l~ 96 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN-LSSNVLYETLDLESLSTLRTLDLNNNY---VQELL 96 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEE-CTTSCCEEEEEETTCTTCCEEECCSSE---EEEEE
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEE-CCCCcCCcchhhhhcCCCCEEECcCCc---ccccc
Confidence 33333333 34556788888887776666666778888888888 777776 22237777888888887774 22221
Q ss_pred Hh-----------------hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhh-hcCCCC
Q 036414 83 KS-----------------LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTL-EKLPHL 143 (252)
Q Consensus 83 ~~-----------------l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~L 143 (252)
.. ...+++|++|++++ +.+..+ .+ .+..+ ++|++|++++|.+....+..+ ..+++|
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~-N~l~~~---~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLAN-NKITML---RDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEECCCSSCEEEECCS-SCCCSG---GGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CCCCcCEEECCCCccCCcCccccCCCCEEECCC-CCCCCc---cchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 00 11244566666665 444330 23 55666 888888888888876556555 468889
Q ss_pred ceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecc
Q 036414 144 EVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELH 223 (252)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~ 223 (252)
++|++++|.+... . . ...+++|++|++++|. ++.++..+..+++|+.|++++|... .+|..+..+++|+.|+++
T Consensus 172 ~~L~L~~N~l~~~--~-~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 172 EHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CEEECTTSCCCEE--E-C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred CEEECCCCcCccc--c-c-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 9999988887653 2 2 4458899999999998 8888777888999999999998765 677777888999999999
Q ss_pred cCC
Q 036414 224 WPQ 226 (252)
Q Consensus 224 ~~~ 226 (252)
+++
T Consensus 246 ~N~ 248 (317)
T 3o53_A 246 GNG 248 (317)
T ss_dssp TCC
T ss_pred CCC
Confidence 876
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=5.3e-19 Score=143.36 Aligned_cols=189 Identities=19% Similarity=0.134 Sum_probs=158.7
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
.++.++++|..+. +++++|++++|.+....+..+..+++|++|+ ++.+.+ .....+.+++|++|++++|. ...
T Consensus 18 ~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~l~~L~~L~Ls~N~---l~~ 91 (290)
T 1p9a_G 18 DKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN-LDRAELTKLQVDGTLPVLGTLDLSHNQ---LQS 91 (290)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE-CTTSCCCEEECCSCCTTCCEEECCSSC---CSS
T ss_pred CCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEE-CCCCccCcccCCCCCCcCCEEECCCCc---CCc
Confidence 3577888988765 6899999998888777778899999999999 998887 23334789999999999994 557
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL 158 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 158 (252)
+|..+..+++|++|++++ +.+.. ++ .+..+ ++|++|++++|++....+..+..+++|+.|++++|.+.....
T Consensus 92 l~~~~~~l~~L~~L~l~~-N~l~~----l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSF-NRLTS----LPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp CCCCTTTCTTCCEEECCS-SCCCC----CCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CchhhccCCCCCEEECCC-CcCcc----cCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 788888999999999999 66655 55 57788 999999999999997777788899999999999998875322
Q ss_pred eecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC
Q 036414 159 ACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
.. +..+++|+.|++++|+ ++.++.....+++|+.+++++|+...
T Consensus 166 -~~-~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 166 -GL-LNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -TT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -HH-hcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCccC
Confidence 22 5679999999999999 99998888888999999999988543
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=159.16 Aligned_cols=210 Identities=20% Similarity=0.183 Sum_probs=149.0
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcc--------------------cCCCCCCcEecccCCCCC--c---hhh
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNY--------------------SSSLKNLIFISALHPSSC--T---PDI 58 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~--------------------l~~l~~L~~L~~l~~~~~--~---~~~ 58 (252)
+.++.+|..+..+ +|++|++++|.+. .+|.. ...+++|++|+ ++.+.. . +..
T Consensus 292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~-l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 292 VTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD-LSRNGLSFKGCCSQS 368 (570)
T ss_dssp CEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE-CCSSCCBEEEEEEHH
T ss_pred ccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEe-CcCCccCcccccccc
Confidence 4455566555555 6666666644443 23321 14566667776 666654 1 455
Q ss_pred cCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchh
Q 036414 59 LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPT 136 (252)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~ 136 (252)
+..+++|++|++++|. ...++..+..+++|+.|++.+ +.+... .+ .+..+ ++|++|++++|.+....+..
T Consensus 369 ~~~~~~L~~L~l~~n~---l~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQH-SNLKQM---SEFSVFLSL-RNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp HHTCSCCCEEECCSCS---EEEEEEEEETCTTCCEEECTT-SEEESC---TTSCTTTTC-TTCCEEECTTSCCEECCTTT
T ss_pred ccccCccCEEECCCCc---cccccccccccCCCCEEEccC-Cccccc---cchhhhhcC-CCCCEEeCcCCcccccchhh
Confidence 6667777777777773 333444466777788887777 433220 22 45666 89999999999888778888
Q ss_pred hhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhcc
Q 036414 137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIK 215 (252)
Q Consensus 137 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 215 (252)
++.+++|++|++++|.+.+...+.. +..+++|++|++++|+ ++++ +..++.+++|+.|++++|...+..+..+..++
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 8899999999999888764444445 7889999999999999 7776 66778999999999999987655556678899
Q ss_pred ccceeecccCC
Q 036414 216 SLCKLELHWPQ 226 (252)
Q Consensus 216 ~L~~L~l~~~~ 226 (252)
+|++|++++++
T Consensus 519 ~L~~L~l~~N~ 529 (570)
T 2z63_A 519 SLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECCSSC
T ss_pred CCcEEEecCCc
Confidence 99999999754
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.5e-19 Score=148.47 Aligned_cols=197 Identities=16% Similarity=0.108 Sum_probs=142.9
Q ss_pred ccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414 19 LMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 95 (252)
Q Consensus 19 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (252)
++..+++.+.+.......+..+++|++|+ ++.+.. .+..++.+++|++|++++|. ... .+. +..+++|++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~-~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELD-LSGNPLSQISAADLAPFTKLELLNLSSNV--LYE-TLD-LESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEE-CTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEE-EEE-ETTCTTCCEEE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEE-CcCCccCcCCHHHhhCCCcCCEEECCCCc--CCc-chh-hhhcCCCCEEE
Confidence 44455554443323333456677999999 988877 45679999999999999996 333 332 78899999999
Q ss_pred eeeccchhHH---HHh---------hc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeec
Q 036414 96 LANQGKMWQI---TRM---------IL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACV 161 (252)
Q Consensus 96 l~~~~~~~~~---~~l---------~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 161 (252)
+++ +.+..+ .++ +. ....+ ++|++|++++|.++...+..++.+++|++|++++|.+........
T Consensus 87 Ls~-n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 87 LNN-NYVQELLVGPSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp CCS-SEEEEEEECTTCCEEECCSSCCSEEEECCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CcC-CccccccCCCCcCEEECCCCccCCcCcccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 988 433220 000 00 11234 778888888888886667778889999999999888876443322
Q ss_pred CCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 162 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 162 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
...+++|++|++++|. +++++. ...+++|+.|++++|... .+|..+..+++|++|+++++.
T Consensus 165 -~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 165 -AASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp -GGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred -hhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence 3468899999999999 888755 335899999999999865 566668889999999999874
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=9.2e-19 Score=152.85 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++.++ .++..+++|++|++++|.+....|..+.++++|++|+ ++.+.. +|.. .+++|++|++++|. ...
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~lp~~--~l~~L~~L~L~~N~--l~~ 104 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD-LSHNKLVKISCH--PTVNLKHLDLSFNA--FDA 104 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE-CCSSCCCEEECC--CCCCCSEEECCSSC--CSS
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe-cCCCceeecCcc--ccCCccEEeccCCc--ccc
Confidence 46666665 4677888888888887776665677778888888888 777766 4433 67788888887774 333
Q ss_pred -chhHhhhccCCCCeEEeee
Q 036414 80 -GVSKSLCELHKLECLKLAN 98 (252)
Q Consensus 80 -~~~~~l~~l~~L~~L~l~~ 98 (252)
.+|..+..+++|++|++++
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEE
T ss_pred ccchhhhccCCcceEEEecC
Confidence 3566777778888887777
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.8e-18 Score=138.81 Aligned_cols=192 Identities=19% Similarity=0.209 Sum_probs=153.6
Q ss_pred cccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hhhcCCCCCccEEEeeccCCccccchhH-hhhccCCCCe
Q 036414 18 KLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PDILSRLPTVQTLRISGDLSHYHSGVSK-SLCELHKLEC 93 (252)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~ 93 (252)
+.++++++++.+. .+|..+. +++++|+ ++.+.. . +..++.+++|++|++++|. ...++. .+..+++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLD-LQSNKLSSLPSKAFHRLTKLRLLYLNDNK---LQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEE-CCSSCCSCCCTTSSSSCTTCCEEECCSSC---CSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEE-CcCCCCCeeCHHHhcCCCCCCEEECCCCc---cCeeChhhhcCCCCCCE
Confidence 4788999966654 5676554 6799999 888876 3 3468899999999999995 334444 4578999999
Q ss_pred EEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414 94 LKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI 171 (252)
Q Consensus 94 L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 171 (252)
|++.+ +.+.. ++ .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . +..+++|++
T Consensus 90 L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~ 161 (270)
T 2o6q_A 90 LWVTD-NKLQA----LPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-V-FDKLTSLKE 161 (270)
T ss_dssp EECCS-SCCCC----CCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTCCE
T ss_pred EECCC-CcCCc----CCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-H-ccCCcccce
Confidence 99998 55655 55 55677 9999999999999988888889999999999999987653322 2 568999999
Q ss_pred EEecCCccccceec-cccccccccceeeccCCCCCCChH-HHHhccccceeecccCC
Q 036414 172 LHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 172 L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~ 226 (252)
|++++|. ++.++. .+..+++|+.|++++|... .+|. .+..+++|+.|++.+++
T Consensus 162 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred eEecCCc-CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 9999998 888765 3678999999999999775 4554 46789999999998765
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.1e-18 Score=142.57 Aligned_cols=190 Identities=16% Similarity=0.185 Sum_probs=139.6
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK 90 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (252)
...+++|++|+++++.+. .++ .+..+++|++|+ ++.+.. .+. ++.+++|++|++++|. ...++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~-L~~n~i~~~~~-~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLE-LKDNQITDLAP-LKNLTKITELELSGNP---LKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEE-CCSSCCCCCGG-GTTCCSCCEEECCSCC---CSCCG-GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEE-ccCCcCCCChh-HccCCCCCEEEccCCc---CCCch-hhcCCCC
Confidence 456788888888866554 344 577888888888 877776 333 8888888888888885 33333 5778888
Q ss_pred CCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCcccc
Q 036414 91 LECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170 (252)
Q Consensus 91 L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 170 (252)
|++|++++ +.+.. ++.+..+ ++|++|++++|.++...+ ++.+++|+.|++++|.+..... ...+++|+
T Consensus 109 L~~L~l~~-n~l~~----~~~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~ 176 (308)
T 1h6u_A 109 IKTLDLTS-TQITD----VTPLAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLT 176 (308)
T ss_dssp CCEEECTT-SCCCC----CGGGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred CCEEECCC-CCCCC----chhhcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCC
Confidence 88888888 55555 5566777 888888888888874433 7788888888888887765221 45788888
Q ss_pred EEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 171 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
.|++++|. +++++. ...+++|+.|++++|... .++ .+..+++|++|++++++
T Consensus 177 ~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 177 TLKADDNK-ISDISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EEECCSSC-CCCCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEE
T ss_pred EEECCCCc-cCcChh-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCe
Confidence 88888888 777765 677888888888888764 444 36778888888887664
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.1e-18 Score=142.70 Aligned_cols=181 Identities=18% Similarity=0.213 Sum_probs=150.2
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
.++.++.+| ++..+++|++|++++|.+.. ++. +..+++|++|+ ++.+.. .++.++.+++|++|++++|. ...
T Consensus 49 ~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~-L~~n~l~~~~~~~~l~~L~~L~l~~n~---l~~ 121 (308)
T 1h6u_A 49 FGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELE-LSGNPLKNVSAIAGLQSIKTLDLTSTQ---ITD 121 (308)
T ss_dssp TTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEE-CCSCCCSCCGGGTTCTTCCEEECTTSC---CCC
T ss_pred eCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEE-ccCCcCCCchhhcCCCCCCEEECCCCC---CCC
Confidence 457788888 68999999999999776654 444 89999999999 998887 45578999999999999995 334
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC 160 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 160 (252)
++. +..+++|++|++++ +.+.. ++.+..+ ++|++|++++|.++...+ +..+++|+.|++++|.+.+...
T Consensus 122 ~~~-l~~l~~L~~L~l~~-n~l~~----~~~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 190 (308)
T 1h6u_A 122 VTP-LAGLSNLQVLYLDL-NQITN----ISPLAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-- 190 (308)
T ss_dssp CGG-GTTCTTCCEEECCS-SCCCC----CGGGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--
T ss_pred chh-hcCCCCCCEEECCC-CccCc----CccccCC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--
Confidence 443 88999999999999 56655 5567788 999999999999985433 8899999999999998865332
Q ss_pred cCCCCCccccEEEecCCccccceeccccccccccceeeccCCCC
Q 036414 161 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL 204 (252)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 204 (252)
...+++|++|++++|+ +++++. +..+++|+.|++++|...
T Consensus 191 --l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 191 --LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp --GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred --hcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCeee
Confidence 4578999999999999 888775 788999999999999864
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=2.1e-18 Score=148.78 Aligned_cols=193 Identities=20% Similarity=0.199 Sum_probs=98.0
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCc---------------
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSH--------------- 76 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~--------------- 76 (252)
+.++++|++|++++|.+.. + ..+..+++|++|+ ++.+.. ....++.+++|++|++++|.-.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSD-I-SVLAKLTNLESLI-ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE-CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEE-ecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEE
Confidence 5555566666665444322 2 2245555555555 544443 1112444455555555544300
Q ss_pred ----cccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC
Q 036414 77 ----YHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS 152 (252)
Q Consensus 77 ----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 152 (252)
.....+. +..+++|++|++.+ +.+.. ++.+..+ ++|++|++++|.+.+..+ ++.+++|+.|++++|.
T Consensus 250 l~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~----~~~~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 250 LANNQISNLAP-LSGLTKLTELKLGA-NQISN----ISPLAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCS-SCCCC----CGGGTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred CCCCccccchh-hhcCCCCCEEECCC-CccCc----cccccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 1111111 34444555555544 23322 2334444 566666666665553222 4556666666666665
Q ss_pred ccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 153 YFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 153 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
+.+... ...+++|+.|++++|+ +++++ ..+.+++|+.|++++|...+..| +..+++|++|++.++
T Consensus 321 l~~~~~----~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 321 ISDISP----VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CSCCGG----GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CCCchh----hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 544221 2356666666666665 55553 35566677777777766544333 566777777777665
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=3.8e-19 Score=142.86 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=140.3
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL 91 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (252)
...+++|+.|+++++... .+ ..+..+++|++|+ ++.+.. .++.++.+++|++|++++|. .....+..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~-l~~n~l~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLA-LGGNKLHDISALKELTNLTYLILTGNQ--LQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEE-CTTSCCCCCGGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEE-CCCCCCCCchhhcCCCCCCEEECCCCc--cCccChhHhcCCcCC
Confidence 567889999999966543 33 3478899999999 888877 45578889999999999985 444444556888999
Q ss_pred CeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414 92 ECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169 (252)
Q Consensus 92 ~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 169 (252)
++|++.+ +.+.. ++ .+..+ ++|++|++++|.++...+..++.+++|+.|++++|.+...... . ++.+++|
T Consensus 112 ~~L~L~~-n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~l~~L 183 (272)
T 3rfs_A 112 KELVLVE-NQLQS----LPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-V-FDKLTQL 183 (272)
T ss_dssp CEEECTT-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTC
T ss_pred CEEECCC-CcCCc----cCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH-H-hcCCccC
Confidence 9999988 55544 44 46777 8999999999998877777788899999999998887653222 2 5678999
Q ss_pred cEEEecCCccccceecc-ccccccccceeeccCCCCCCCh
Q 036414 170 KILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLP 208 (252)
Q Consensus 170 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~p 208 (252)
++|++++|+ +++++.. ++.+++|+.|++++|+.....|
T Consensus 184 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 184 KDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 999999998 7777543 5788999999999987655433
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=1e-18 Score=157.22 Aligned_cols=212 Identities=21% Similarity=0.215 Sum_probs=132.3
Q ss_pred Ccccc-chHHHhhccccEEEecCCCCCCCCC-cccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 5 YIDHS-SEDIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 5 ~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
.+..+ |.++..+++|++|++++|.+...+| ..+.++++|++|+ ++.+.. .+..+..+++|++|+++++.-....
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY-LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE-CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe-cCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 34343 3345566666666666555543333 4456666666666 655554 3344555666666666666421224
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC--------CchhhhcCCCCceEEec
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED--------PMPTLEKLPHLEVLKLK 149 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~--------~~~~l~~~~~L~~L~l~ 149 (252)
..|..+..+++|+.|++++ +.+.. ++ .+..+ ++|++|++++|.++.. ....++.+++|+.|+++
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~-N~l~~----i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSN-NNIAN----INDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp CSSCTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred cCCcccccCCCCCEEECCC-CCCCc----CChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence 4566667777777777777 44444 44 45666 7778888777766532 11235677778888887
Q ss_pred cCCccCceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCCCChHHHH-hccccceeecccCC
Q 036414 150 QNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEELW-RIKSLCKLELHWPQ 226 (252)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l~~~~ 226 (252)
+|.+.... ... +.++++|+.|++++|. ++.++.. +..+++|+.|++++|....-.+..+. .+++|+.+++++++
T Consensus 545 ~N~l~~i~-~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 545 SNGFDEIP-VEV-FKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp SSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCCCCCC-HHH-cccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 77765321 112 5677888888888887 7777554 46778888888888876544444455 67888888888765
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=3.9e-18 Score=147.11 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=32.4
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeecc
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGD 73 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~ 73 (252)
+.++.+|. +..+++|++|++++|.+.. +++ +..+++|++|+ ++.+.. ....++.+++|++|++++|
T Consensus 56 ~~i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 56 LGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDIL-MNNNQIADITPLANLTNLTGLTLFNN 122 (466)
T ss_dssp SCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE-CCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCccCcc-hhhhcCCCEEECCCCccCC-chh-hhccccCCEEE-CCCCccccChhhcCCCCCCEEECCCC
Confidence 44555553 5556666666666544332 222 55555555555 544444 1111445555555555554
No 57
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.1e-19 Score=148.46 Aligned_cols=206 Identities=18% Similarity=0.164 Sum_probs=142.2
Q ss_pred chHHHhh--ccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC----chhhcCCCCCccEEEeeccCCccccchhH
Q 036414 10 SEDIWMM--QKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC----TPDILSRLPTVQTLRISGDLSHYHSGVSK 83 (252)
Q Consensus 10 p~~i~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (252)
|..+..+ ++++.|+++++.+....+. +..+++|++|+ ++.+.. .+..+..+++|++|++++|. .....+.
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~-L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMD-LSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVN 136 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEE-CTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEE-ccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--cCHHHHH
Confidence 4556666 7888888886666554444 56788888888 777765 34457778888888888886 5566777
Q ss_pred hhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeec-ccCCC-CchhhhcCC-CCceEEeccCC--ccC
Q 036414 84 SLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNT-ELIED-PMPTLEKLP-HLEVLKLKQNS--YFE 155 (252)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~~--~~~ 155 (252)
.+..+++|++|++.+|..+. . ++ .+..+ ++|++|++++| .+++. .+..++.++ +|++|++++|. +.+
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHH----HHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred HHhcCCCCCEEECCCCCCCCHHH----HHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 78888888888888853442 3 44 45666 88888888888 77643 355667788 88888888773 332
Q ss_pred ceeeecCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCC-CChHHHHhccccceeecccC
Q 036414 156 RKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLR-KLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~ 225 (252)
..+... ...+++|++|++++|..++ ..+..++.+++|+.|++++|.... .....+..+++|++|++++|
T Consensus 212 ~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 212 SDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 223323 4567888888888887444 344456777888888888885221 11124667888888888877
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=6.9e-19 Score=141.54 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=153.6
Q ss_pred CCCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 2 PSSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 2 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
-++.++.++. .+..+++|++|++++|.+....+..+..+++|++|+ ++.+.. .+..+..+++|++|++++|. .
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l 112 (276)
T 2z62_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQSLALGAFSGLSSLQKLVAVETN--L 112 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE-CTTCCCCEECTTTTTTCTTCCEEECTTSC--C
T ss_pred CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEE-CCCCccCccChhhhcCCccccEEECCCCC--c
Confidence 3577888876 689999999999998877666666789999999999 998877 44568899999999999996 3
Q ss_pred ccchhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCc----eEEecc
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE----VLKLKQ 150 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~----~L~l~~ 150 (252)
....+..+..+++|++|++++ +.+. . +| .+..+ ++|++|++++|.++...+..+..+++|+ .+++++
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~----l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAH-NLIQSFK----LPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCS-SCCCCCC----CCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred cccCchhcccCCCCCEEECcC-Cccceec----CchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 333333688899999999998 4442 3 45 77888 9999999999999876677777666666 899988
Q ss_pred CCccCceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCCCC
Q 036414 151 NSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKL 207 (252)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 207 (252)
|.+..... . .....+|+.|++++|. ++.++.. ++.+++|+.|++++|+.....
T Consensus 187 n~l~~~~~--~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 187 NPMNFIQP--G-AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCCEECT--T-SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcccccCc--c-ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCcccccC
Confidence 88765322 2 3345589999999999 8888654 478999999999999876543
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=1.8e-19 Score=158.19 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=76.8
Q ss_pred CCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccc
Q 036414 3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (252)
++.++.+ |.++..+++|++|++++|.+....|..+.++++|++|+ ++.+.. .+..++.+++|++|++++|. ..
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~ 111 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD-LSDNHLSSLSSSWFGPLSSLKYLNLMGNP--YQ 111 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCCSCCHHHHTTCTTCCEEECTTCC--CS
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE-CCCCccCccCHHHhccCCCCcEEECCCCc--cc
Confidence 3455555 34566677777777776666555556667777777777 666655 23336677777777777764 22
Q ss_pred c-chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhh
Q 036414 79 S-GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLE 138 (252)
Q Consensus 79 ~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 138 (252)
. ..+..+..+++|++|++.++..++. +| .+..+ ++|++|++++|.+....+..++
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVETFSE----IRRIDFAGL-TSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTC-CEEEEEEEEETTCCEECTTTTT
T ss_pred ccchhhhhhccCCccEEECCCCccccc----cCHhhhhcc-cccCeeeccCCcccccChhhhh
Confidence 2 2344566677777777776432333 33 45555 6777777776666544444443
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=5.3e-18 Score=136.20 Aligned_cols=175 Identities=23% Similarity=0.235 Sum_probs=85.8
Q ss_pred cCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--ccc
Q 036414 37 SSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEY 113 (252)
Q Consensus 37 l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~ 113 (252)
...+++|+.|. +..+.. .+..+..+++|++|++++|. ...+ ..+..+++|++|++.+ +.+.. ++ .+.
T Consensus 37 ~~~l~~L~~L~-l~~~~i~~~~~l~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~L~~-n~l~~----~~~~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQII-ANNSDIKSVQGIQYLPNVRYLALGGNK---LHDI-SALKELTNLTYLILTG-NQLQS----LPNGVFD 106 (272)
T ss_dssp HHHHTTCCEEE-CTTSCCCCCTTGGGCTTCCEEECTTSC---CCCC-GGGTTCTTCCEEECTT-SCCCC----CCTTTTT
T ss_pred cccccceeeee-eCCCCcccccccccCCCCcEEECCCCC---CCCc-hhhcCCCCCCEEECCC-CccCc----cChhHhc
Confidence 34455555555 544444 33345555555555555553 1112 2445555555555555 33333 23 234
Q ss_pred CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecc-cccccc
Q 036414 114 KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPK 192 (252)
Q Consensus 114 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~ 192 (252)
.+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . +..+++|++|++++|. ++.++.. ++.+++
T Consensus 107 ~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 107 KL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-V-FDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ 182 (272)
T ss_dssp TC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH-H-hccCccCCEEECCCCC-cCccCHHHhcCCcc
Confidence 44 5555555555555544444455555555555555554432111 1 3445555555555555 4444332 345555
Q ss_pred ccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 193 LESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 193 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
|+.|++++|...+..+..+..+++|++|++.++
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 555555555544323333445555555555543
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=3.6e-19 Score=146.98 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=157.6
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCC-CCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY 77 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (252)
.++.++..+..+.++++|++|++++|.+... ++..+..+++|++|+ ++.+.. .+..++.+++|++|++++|....
T Consensus 78 ~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~-L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 78 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS-LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE-CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe-CcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 3456666666677899999999998876544 777789999999999 988876 56678899999999999994222
Q ss_pred ccchhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCC-CCceEEeeec--ccC-CCCchhhhcCCCCceEEecc
Q 036414 78 HSGVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPP-SLTQLSLSNT--ELI-EDPMPTLEKLPHLEVLKLKQ 150 (252)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~-~L~~l~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~ 150 (252)
...++..+..+++|++|++.+|..+. . ++ .+..+ + +|++|++++| .++ ...+..++.+++|++|++++
T Consensus 157 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 157 EFALQTLLSSCSRLDELNLSWCFDFTEKH----VQVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTCCHHH----HHHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred HHHHHHHHhcCCCCCEEcCCCCCCcChHH----HHHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 23577778999999999999953552 2 34 56777 7 9999999999 444 34456778899999999999
Q ss_pred CC-ccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 151 NS-YFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 151 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
|. +++..+. . ...+++|++|++++|..+... ...++.+++|+.|++++| ........+. .+++.|++.++
T Consensus 232 ~~~l~~~~~~-~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n 303 (336)
T 2ast_B 232 SVMLKNDCFQ-E-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS 303 (336)
T ss_dssp CTTCCGGGGG-G-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred CCcCCHHHHH-H-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence 88 4443333 3 668899999999999744422 224677999999999999 4333323332 23555566544
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=139.67 Aligned_cols=198 Identities=19% Similarity=0.162 Sum_probs=153.8
Q ss_pred hhccccEEEecCCCCCCCCCccc--CCCCCCcEecccCCCCCc---h----hhcCCCCCccEEEeeccCCccccchhHhh
Q 036414 15 MMQKLMHLNFGSITLPAPPKNYS--SSLKNLIFISALHPSSCT---P----DILSRLPTVQTLRISGDLSHYHSGVSKSL 85 (252)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~~l~~~~~~---~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 85 (252)
.+++|++|++++|.+....|..+ ..+++|++|+ ++.+.+. + ..+..+++|++|++++|. .....+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~-Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLR-LRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCE-EESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEE-eecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHh
Confidence 45679999999998888888877 8999999999 8888762 1 335679999999999997 555556788
Q ss_pred hccCCCCeEEeeeccchh--HHHHhhc---cccCCCCCCceEEeeecccCCCCch----hhhcCCCCceEEeccCCccCc
Q 036414 86 CELHKLECLKLANQGKMW--QITRMIL---SEYKFPPSLTQLSLSNTELIEDPMP----TLEKLPHLEVLKLKQNSYFER 156 (252)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~--~~~~l~~---~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~ 156 (252)
..+++|++|++++|.-.+ . ++ .+..+ ++|++|++++|.++. .+. .++.+++|++|++++|.+...
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERG----LMAALCPHKF-PAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHH----HHTTSCTTSS-CCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred ccCCCCCEEECCCCCCccchh----hhHHHhhhcC-CCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 899999999999943221 2 22 34677 999999999999862 232 357889999999999998764
Q ss_pred eee-ecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 157 KLA-CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 157 ~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
.+. +.....+++|++|++++|+ ++.++... +++|+.|++++|... .+|. ...+++|++|++++++
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--CSCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTT
T ss_pred chhhHHhccCcCcCCEEECCCCC-CCchhhhh--cCCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCC
Confidence 322 1102334899999999999 88887655 389999999999875 4444 5678999999998875
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=5.9e-19 Score=154.06 Aligned_cols=196 Identities=20% Similarity=0.219 Sum_probs=151.0
Q ss_pred hccccEEEecCCCCCCCCCccc-----CCCCCCcEecccCCCCC-ch-------------------------hh-cCCCC
Q 036414 16 MQKLMHLNFGSITLPAPPKNYS-----SSLKNLIFISALHPSSC-TP-------------------------DI-LSRLP 63 (252)
Q Consensus 16 l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~~l~~~~~-~~-------------------------~~-l~~l~ 63 (252)
+++|++|++++|.+...+|..+ ..+++|+.++ +..+.. +| .. ...++
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~-l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ-VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE-EEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEecc-ccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 3577778877666665666666 6666666665 444432 11 11 16789
Q ss_pred CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchh---HHHHhhc-cccCCCCCCceEEeeecccCCCCch-hhh
Q 036414 64 TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMW---QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMP-TLE 138 (252)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~-~l~ 138 (252)
+|++|++++|. .....|..+..+++|++|++++ +.+. . +| .+..+ ++|++|++++|.+....+. .+.
T Consensus 325 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~----~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 325 PFLHLDFSNNL--LTDTVFENCGHLTELETLILQM-NQLKELSK----IAEMTTQM-KSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCEEECCSSC--CCTTTTTTCCCCSSCCEEECCS-SCCCBHHH----HHHHHTTC-TTCCEEECCSSCCBCCGGGCSCC
T ss_pred cccEEEeECCc--cChhhhhhhccCCCCCEEEccC-CccCcccc----chHHHhhC-CCCCEEECCCCcCCcccccchhc
Confidence 99999999997 6666788889999999999998 4442 4 55 67888 9999999999999864554 477
Q ss_pred cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHH-HHhcccc
Q 036414 139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWRIKSL 217 (252)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L 217 (252)
.+++|++|++++|.+.+..+. . . .++|+.|++++|+ ++.++.....+++|+.|++++|... .+|.. +..+++|
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~-~-l--~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFR-C-L--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGG-S-C--CTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cCccCCEEECcCCCCCcchhh-h-h--cccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 889999999999988653332 1 2 1799999999998 8899888889999999999999875 68775 7889999
Q ss_pred ceeecccCC
Q 036414 218 CKLELHWPQ 226 (252)
Q Consensus 218 ~~L~l~~~~ 226 (252)
++|++++++
T Consensus 471 ~~L~l~~N~ 479 (520)
T 2z7x_B 471 QKIWLHTNP 479 (520)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCC
Confidence 999999875
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=1.3e-18 Score=152.87 Aligned_cols=189 Identities=17% Similarity=0.102 Sum_probs=147.4
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++++|..+. ++|++|++++|.+....|..+.++++|++|+ ++.+.. .+..++.+++|++|++++|. ...
T Consensus 14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~ 88 (549)
T 2z81_A 14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLI-LKSSRINTIEGDAFYSLGSLEHLDLSDNH--LSS 88 (549)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEE-CTTSCCCEECTTTTTTCTTCCEEECTTSC--CCS
T ss_pred CCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEE-CCCCCcCccChhhccccccCCEEECCCCc--cCc
Confidence 467889998765 7899999998887776778899999999999 998887 45668999999999999996 555
Q ss_pred chhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecc-cCCCCchhhhcCCCCceEEeccCCccC
Q 036414 80 GVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTE-LIEDPMPTLEKLPHLEVLKLKQNSYFE 155 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~ 155 (252)
..+..+..+++|++|++++ +.+. . .| .+..+ ++|++|++++|. +....+..++.+++|++|++++|.+.+
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~----~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMG-NPYQTLG----VTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CCHHHHTTCTTCCEEECTT-CCCSSSC----SSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cCHHHhccCCCCcEEECCC-Ccccccc----hhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 5566699999999999998 5553 2 34 67888 999999999998 443444678999999999999988765
Q ss_pred ceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCC
Q 036414 156 RKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~ 205 (252)
... .. .+.+++|++|++++|. ...++.. .+.+++|+.|++++|...+
T Consensus 163 ~~~-~~-l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 163 YQS-QS-LKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp ECT-TT-TTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cCh-hh-hhccccCceEecccCc-ccccchhhHhhcccccEEEccCCcccc
Confidence 332 23 6677888888888777 5544332 2457778888887776543
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=4.5e-18 Score=149.94 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++.+| .++..+++|++|++++|.+....|..+.++++|++|+ ++.|.+ +|.. .+++|++|++++|. ...
T Consensus 61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~lp~~--~l~~L~~L~Ls~N~--l~~ 135 (562)
T 3a79_B 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD-VSHNRLQNISCC--PMASLRHLDLSFND--FDV 135 (562)
T ss_dssp SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE-CTTSCCCEECSC--CCTTCSEEECCSSC--CSB
T ss_pred CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE-CCCCcCCccCcc--ccccCCEEECCCCC--ccc
Confidence 45666665 3577777777777776666655566677777777777 776665 3333 57777777777774 222
Q ss_pred -chhHhhhccCCCCeEEeee
Q 036414 80 -GVSKSLCELHKLECLKLAN 98 (252)
Q Consensus 80 -~~~~~l~~l~~L~~L~l~~ 98 (252)
..|..+.++++|++|++++
T Consensus 136 l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 136 LPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp CCCCGGGGGCTTCCEEEEEC
T ss_pred cCchHhhcccCcccEEecCC
Confidence 2345667777777777776
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=153.96 Aligned_cols=208 Identities=16% Similarity=0.171 Sum_probs=156.9
Q ss_pred cccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh--------------------cCCCCC
Q 036414 7 DHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI--------------------LSRLPT 64 (252)
Q Consensus 7 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~--------------------l~~l~~ 64 (252)
+.+|..+..+++|++|+++++... .+|..+..+ +|++|+ +..+.. ++.. ...+++
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~-l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLE-LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEE-EESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred hhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEe-eccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence 445777899999999999977655 688888888 899998 777665 2221 134566
Q ss_pred ccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCc-hhhhcCCC
Q 036414 65 VQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPM-PTLEKLPH 142 (252)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~ 142 (252)
|++|++++|.-......+..+..+++|++|++.+ +.+.. ++ .+..+ ++|++|++++|.+....+ ..+..+++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVIT----MSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS-CSEEE----EEEEEETC-TTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCC-Ccccc----cccccccc-CCCCEEEccCCccccccchhhhhcCCC
Confidence 7777776664111112256677888888888887 44434 44 56777 999999999998876555 56788999
Q ss_pred CceEEeccCCccCceeeecCCCCCccccEEEecCCcccc--ceeccccccccccceeeccCCCCCCChHHHHhcccccee
Q 036414 143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE--EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKL 220 (252)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 220 (252)
|+.|++++|.+..... .. +.++++|++|++++|. +. .++..++.+++|+.|++++|...+..|..+..+++|++|
T Consensus 423 L~~L~l~~n~l~~~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 423 LIYLDISHTHTRVAFN-GI-FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CCEEECTTSCCEECCT-TT-TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEeCcCCcccccch-hh-hhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 9999999887755322 23 6789999999999999 65 477788899999999999998876567788899999999
Q ss_pred ecccCC
Q 036414 221 ELHWPQ 226 (252)
Q Consensus 221 ~l~~~~ 226 (252)
+++++.
T Consensus 500 ~l~~n~ 505 (570)
T 2z63_A 500 NMASNQ 505 (570)
T ss_dssp ECCSSC
T ss_pred eCCCCc
Confidence 999874
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=1.3e-17 Score=143.47 Aligned_cols=174 Identities=18% Similarity=0.096 Sum_probs=82.1
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCCchhhcCCCCCccEEEeeccCCccccchh
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVS 82 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (252)
++.++.+| ++..+++|++|++++|.+.. +| +..+++|++|+ ++.+.+.-..++.+++|++|++++|. ...++
T Consensus 51 ~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~-Ls~N~l~~~~~~~l~~L~~L~L~~N~---l~~l~ 122 (457)
T 3bz5_A 51 NSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLA-CDSNKLTNLDVTPLTKLTYLNCDTNK---LTKLD 122 (457)
T ss_dssp SSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE-CCSSCCSCCCCTTCTTCCEEECCSSC---CSCCC
T ss_pred CCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEE-CcCCCCceeecCCCCcCCEEECCCCc---CCeec
Confidence 34555555 45666666666666554433 22 55566666666 55555411125556666666666553 12222
Q ss_pred HhhhccCCCCeEEeeeccchhHHHHhhc---------------------cccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414 83 KSLCELHKLECLKLANQGKMWQITRMIL---------------------SEYKFPPSLTQLSLSNTELIEDPMPTLEKLP 141 (252)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~---------------------~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 141 (252)
+..+++|++|++++ +.+.. ++ .+..+ ++|++|++++|.++.. + ++.++
T Consensus 123 --~~~l~~L~~L~l~~-N~l~~----l~l~~l~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~ls~n~l~~l-~--l~~l~ 191 (457)
T 3bz5_A 123 --VSQNPLLTYLNCAR-NTLTE----IDVSHNTQLTELDCHLNKKITKLDVTPQ-TQLTTLDCSFNKITEL-D--VSQNK 191 (457)
T ss_dssp --CTTCTTCCEEECTT-SCCSC----CCCTTCTTCCEEECTTCSCCCCCCCTTC-TTCCEEECCSSCCCCC-C--CTTCT
T ss_pred --CCCCCcCCEEECCC-Cccce----eccccCCcCCEEECCCCCcccccccccC-CcCCEEECCCCcccee-c--cccCC
Confidence 44555555555555 22211 11 12222 3444444444444321 1 33444
Q ss_pred CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCC
Q 036414 142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 203 (252)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 203 (252)
+|+.|++++|.+... . .+.+++|++|++++|+ +++++ .+.+++|+.|++++|..
T Consensus 192 ~L~~L~l~~N~l~~~----~-l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 192 LLNRLNCDTNNITKL----D-LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp TCCEEECCSSCCSCC----C-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCC
T ss_pred CCCEEECcCCcCCee----c-cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcC
Confidence 444444444444331 1 3345555555555555 44443 44455555555555544
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=3.9e-18 Score=153.46 Aligned_cols=213 Identities=16% Similarity=0.171 Sum_probs=129.3
Q ss_pred CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccc
Q 036414 3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~ 78 (252)
++.++.+|. ++.++++|++|++++|.+....|..+.++++|++|+ ++.+.. ++. .++++++|++|++++|. ..
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~ 110 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN-LQHNELSQLSDKTFAFCTNLTELHLMSNS--IQ 110 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE-CCCCccCccChhhhccCCCCCEEECCCCc--cC
Confidence 456666665 477777788888877766666666677777777777 776665 343 36777777777777774 33
Q ss_pred cchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh--cCCCCceEEeccCCccC
Q 036414 79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE--KLPHLEVLKLKQNSYFE 155 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~ 155 (252)
...+..+.++++|++|++++ +.+... .+ .+..+ ++|++|++++|.++...+..++ .+++|+.|++++|.+.+
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSH-NGLSST---KLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCS-SCCSCC---CCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred ccChhHccccCCCCEEECCC-Cccccc---Cchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 33335667777777777777 333220 23 45555 7777777777766654444443 34566666666554432
Q ss_pred ceee--------------------------------------------------ecCCCCC--ccccEEEecCCccccce
Q 036414 156 RKLA--------------------------------------------------CVGCSSF--PQLKILHLKSMLWLEEW 183 (252)
Q Consensus 156 ~~~~--------------------------------------------------~~~~~~~--~~L~~L~l~~~~~l~~~ 183 (252)
.... .. +.++ ++|++|++++|. ++.+
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~-l~~~ 263 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNN-LNVV 263 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT-TGGGGGSCCCEEECTTSC-CCEE
T ss_pred cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH-hhccCcCCCCEEECCCCC-cCcc
Confidence 1110 00 1122 236666666666 5544
Q ss_pred e-ccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414 184 T-MGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225 (252)
Q Consensus 184 ~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 225 (252)
+ ..++.+++|+.|++++|...+..|..+..+++|++|++.++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 2 34566677777777777665545555666777777777653
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=155.90 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=69.0
Q ss_pred Ccccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhh--cCCCCCccEEEeeccCCccc
Q 036414 5 YIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDI--LSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 5 ~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~--l~~l~~L~~L~l~~~~~~~~ 78 (252)
.+..+ |.++.++++|++|++++|.+....|..+.++++|++|+ ++.|.. .+.. ++.+++|++|++++|. ..
T Consensus 60 ~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l~ 136 (844)
T 3j0a_A 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR-LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ--IR 136 (844)
T ss_dssp CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE-CTTCCCSSCCSTTCCCSSCSSCCEEEEESCC--CC
T ss_pred CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee-CcCCCCCcccccCccccccCCCCEEECCCCc--cc
Confidence 34566 66788888899999988877777788888888888888 887766 2444 7788888888888885 33
Q ss_pred cch-hHhhhccCCCCeEEeeec
Q 036414 79 SGV-SKSLCELHKLECLKLANQ 99 (252)
Q Consensus 79 ~~~-~~~l~~l~~L~~L~l~~~ 99 (252)
... +..+.++++|++|++.++
T Consensus 137 ~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 137 SLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCCCCGGGGTCSSCCEEEEESS
T ss_pred ccccchhHhhCCCCCEEECCCC
Confidence 322 346778888888888873
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.6e-18 Score=142.01 Aligned_cols=185 Identities=18% Similarity=0.220 Sum_probs=147.5
Q ss_pred CCcc-ccchHH--HhhccccEEEecCCCCCCCCCcccCCC-----CCCcEecccCCCCC---chhhcCCCCCccEEEeec
Q 036414 4 SYID-HSSEDI--WMMQKLMHLNFGSITLPAPPKNYSSSL-----KNLIFISALHPSSC---TPDILSRLPTVQTLRISG 72 (252)
Q Consensus 4 ~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~ 72 (252)
+.++ .+|..+ ..+++|++|++++|.+... |..+..+ ++|++|+ ++.+.. .+..++.+++|++|++++
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLS-IAQAHSLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEE-EESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEE-eeCCCCccchHHHhccCCCCCEEECCC
Confidence 4555 678776 8999999999998877665 7777777 8999999 988877 446789999999999999
Q ss_pred cCCccccc--hhHhh--hccCCCCeEEeeeccchh---HHHHhhc--cccCCCCCCceEEeeecccCCCCc-hhhhcCCC
Q 036414 73 DLSHYHSG--VSKSL--CELHKLECLKLANQGKMW---QITRMIL--SEYKFPPSLTQLSLSNTELIEDPM-PTLEKLPH 142 (252)
Q Consensus 73 ~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~---~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~ 142 (252)
|. .... ++..+ ..+++|++|++++ +.+. . ++ .+..+ ++|++|++++|.+....+ ..+..+++
T Consensus 183 N~--l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 183 NP--ELGERGLISALCPLKFPTLQVLALRN-AGMETPSG----VCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CT--TCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHH----HHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CC--cCcchHHHHHHHhccCCCCCEEECCC-CcCcchHH----HHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCC
Confidence 96 3333 44555 7899999999999 5553 3 33 33566 999999999999986654 45567899
Q ss_pred CceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC
Q 036414 143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
|+.|++++|.+.. ++.. .. ++|++|++++|+ +++++. +..+++|+.|++++|+..+
T Consensus 255 L~~L~Ls~N~l~~--ip~~-~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLKQ--VPKG-LP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCSS--CCSS-CC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccCh--hhhh-cc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999873 3322 33 899999999999 888866 8899999999999998653
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=5.1e-19 Score=149.02 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCC----CCcccCCCCCCcEecccCCCCC------chhhc-------CCCCCc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAP----PKNYSSSLKNLIFISALHPSSC------TPDIL-------SRLPTV 65 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~~l~~~~~------~~~~l-------~~l~~L 65 (252)
...+..++..+..+++|++|++++|.+... ++..+..+++|++|+ ++.+.. .|..+ ..+++|
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~-Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE-FSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEE-CCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEe-CcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 345567777888888888888887766543 333466788888888 666422 23333 677888
Q ss_pred cEEEeeccCCcccc----chhHhhhccCCCCeEEeeec
Q 036414 66 QTLRISGDLSHYHS----GVSKSLCELHKLECLKLANQ 99 (252)
Q Consensus 66 ~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 99 (252)
++|++++|. ... .++..+..+++|++|++++|
T Consensus 97 ~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 97 HTVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp CEEECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred cEEECCCCc--CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 888888875 333 46667777788888888773
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=155.42 Aligned_cols=125 Identities=24% Similarity=0.257 Sum_probs=67.8
Q ss_pred CCcccc-chHHHhhccccEEEecCCCCCCCC-CcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccc
Q 036414 4 SYIDHS-SEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 4 ~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (252)
+.|+.+ |.++.++++|++|++++|.....+ |..+.++++|++|+ ++.+.. .|..++++++|++|++++|. ..
T Consensus 34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~--l~ 110 (844)
T 3j0a_A 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD-LGSSKIYFLHPDAFQGLFHLFELRLYFCG--LS 110 (844)
T ss_dssp CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE-CTTCCCCEECTTSSCSCSSCCCEECTTCC--CS
T ss_pred CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE-CCCCcCcccCHhHccCCcccCEeeCcCCC--CC
Confidence 444444 344566666666666655443333 45566666666666 665554 34556666666666666664 33
Q ss_pred cchhHh--hhccCCCCeEEeeeccchhHHHHhh--c-cccCCCCCCceEEeeecccCCCCchhh
Q 036414 79 SGVSKS--LCELHKLECLKLANQGKMWQITRMI--L-SEYKFPPSLTQLSLSNTELIEDPMPTL 137 (252)
Q Consensus 79 ~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~l~--~-~~~~~~~~L~~l~l~~~~~~~~~~~~l 137 (252)
...+.. +.++++|++|++++ +.+.. + + .+.++ ++|++|++++|.+....+..+
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~-N~l~~----~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSK-NQIRS----LYLHPSFGKL-NSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEES-CCCCC----CCCCGGGGTC-SSCCEEEEESSCCCCCCSGGG
T ss_pred cccccCccccccCCCCEEECCC-Ccccc----cccchhHhhC-CCCCEEECCCCcCCeeCHHHc
Confidence 333333 55666666666666 33311 1 1 35555 666666666666554444333
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=8.3e-18 Score=148.25 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=104.2
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYH 78 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (252)
.++.++.+|..+. ++|++|++++|.+....+..+.++++|++|+ ++.+.+ .+..++.+++|++|++++|. .
T Consensus 39 s~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l 112 (562)
T 3a79_B 39 SNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLR-LSHNRIRSLDFHVFLFNQDLEYLDVSHNR---L 112 (562)
T ss_dssp TTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEE-CCSCCCCEECTTTTTTCTTCCEEECTTSC---C
T ss_pred CCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEE-CCCCCCCcCCHHHhCCCCCCCEEECCCCc---C
Confidence 3578888998765 7999999998888776778899999999999 999887 46668999999999999995 4
Q ss_pred cchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414 79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 153 (252)
..+|.. .+++|++|++++ +.+..+. +| .+..+ ++|++|++++|.+.......+..+ +|++|++++|.+
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~-N~l~~l~--~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSF-NDFDVLP--VCKEFGNL-TKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp CEECSC--CCTTCSEEECCS-SCCSBCC--CCGGGGGC-TTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred CccCcc--ccccCCEEECCC-CCccccC--chHhhccc-CcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence 467765 899999999999 5553300 23 67777 899999999888764333222222 226666655543
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=3.3e-17 Score=140.89 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=128.6
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCCchhhcCCCCCccEEEeeccCCc------
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSH------ 76 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~------ 76 (252)
++.++.+| ++.+++|++|++++|.+.. ++ +..+++|++|+ ++.+...--.++.+++|++|++++|.-.
T Consensus 73 ~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~-L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~ 146 (457)
T 3bz5_A 73 SNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN-CDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSH 146 (457)
T ss_dssp SSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE-CCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTT
T ss_pred CCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE-CCCCcCCeecCCCCCcCCEEECCCCccceecccc
Confidence 34555554 5666666666666555443 22 55666666666 5555541112555555555555555300
Q ss_pred -------------cccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCC
Q 036414 77 -------------YHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHL 143 (252)
Q Consensus 77 -------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 143 (252)
....+ .+..+++|+.|++++ +.+.. +| +..+ ++|+.|++++|.++.. .++.+++|
T Consensus 147 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~----l~-l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L 214 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITE----LD-VSQN-KLLNRLNCDTNNITKL---DLNQNIQL 214 (457)
T ss_dssp CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCC----CC-CTTC-TTCCEEECCSSCCSCC---CCTTCTTC
T ss_pred CCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccce----ec-cccC-CCCCEEECcCCcCCee---ccccCCCC
Confidence 11111 244556666666666 44433 44 6677 9999999999999854 37789999
Q ss_pred ceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccccc----------ccceeeccCCCCCCChHHHHh
Q 036414 144 EVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK----------LESLILNPCAYLRKLPEELWR 213 (252)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~----------L~~L~l~~~~~~~~~p~~l~~ 213 (252)
+.|++++|.+.+. . .+.+++|+.|++++|+ +++++ .+.+++ |+.|++++|...+.+| ...
T Consensus 215 ~~L~Ls~N~l~~i----p-~~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 215 TFLDCSSNKLTEI----D-VTPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp SEEECCSSCCSCC----C-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTT
T ss_pred CEEECcCCccccc----C-ccccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccc
Confidence 9999999998772 2 5688999999999999 88765 334444 4566666666665566 357
Q ss_pred ccccceeecccCC
Q 036414 214 IKSLCKLELHWPQ 226 (252)
Q Consensus 214 l~~L~~L~l~~~~ 226 (252)
+++|+.|+++++.
T Consensus 285 l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 285 CRKIKELDVTHNT 297 (457)
T ss_dssp CTTCCCCCCTTCT
T ss_pred cccCCEEECCCCc
Confidence 8999999999885
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=4e-18 Score=134.24 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=144.3
Q ss_pred CCCccccch-HHHhhccccEEEecCCC-CCCCCCcccCCCCCCcEecccCC-CCC--c-hhhcCCCCCccEEEeeccCCc
Q 036414 3 SSYIDHSSE-DIWMMQKLMHLNFGSIT-LPAPPKNYSSSLKNLIFISALHP-SSC--T-PDILSRLPTVQTLRISGDLSH 76 (252)
Q Consensus 3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~~l~~-~~~--~-~~~l~~l~~L~~L~l~~~~~~ 76 (252)
++.++.+|. .+..+++|++|++++|. +....+..+.++++|++|+ ++. +.. + +..+..+++|++|++++|.
T Consensus 40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~-l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-- 116 (239)
T 2xwt_C 40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE-IRNTRNLTYIDPDALKELPLLKFLGIFNTG-- 116 (239)
T ss_dssp SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEE-EEEETTCCEECTTSEECCTTCCEEEEEEEC--
T ss_pred CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEE-CCCCCCeeEcCHHHhCCCCCCCEEeCCCCC--
Confidence 578888887 68899999999999886 5444445789999999999 887 666 3 3457889999999999995
Q ss_pred cccchhHhhhccCCCC---eEEeeeccchhHHHHhhc--cccCCCCCCc-eEEeeecccCCCCchhhhcCCCCceEEecc
Q 036414 77 YHSGVSKSLCELHKLE---CLKLANQGKMWQITRMIL--SEYKFPPSLT-QLSLSNTELIEDPMPTLEKLPHLEVLKLKQ 150 (252)
Q Consensus 77 ~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~l~~--~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 150 (252)
...+|. +..+++|+ +|++.++..+.. ++ .+..+ ++|+ ++++++|.++......+.. ++|+.|++++
T Consensus 117 -l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~----i~~~~~~~l-~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 117 -LKMFPD-LTKVYSTDIFFILEITDNPYMTS----IPVNAFQGL-CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp -CCSCCC-CTTCCBCCSEEEEEEESCTTCCE----ECTTTTTTT-BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred -Cccccc-cccccccccccEEECCCCcchhh----cCcccccch-hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 344665 77788888 999999436655 55 47777 9999 9999999988444444544 8999999999
Q ss_pred CC-ccCceeeecCCCCC-ccccEEEecCCccccceeccccccccccceeeccCC
Q 036414 151 NS-YFERKLACVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA 202 (252)
Q Consensus 151 ~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 202 (252)
|. +... .... +.++ ++|+.|++++|+ ++.++.. .+++|+.|+++++.
T Consensus 189 n~~l~~i-~~~~-~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVI-DKDA-FGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEE-CTTT-TTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCcccC-CHHH-hhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 85 6532 2223 5678 999999999999 8888764 78999999998875
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.3e-18 Score=150.87 Aligned_cols=207 Identities=14% Similarity=0.057 Sum_probs=158.0
Q ss_pred CCCCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-----------------hcC
Q 036414 1 MPSSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-----------------ILS 60 (252)
Q Consensus 1 ~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-----------------~l~ 60 (252)
+.++.++.++ ..+..+++|++|++++|.+....| +..+++|++|+ ++.|.+ ++. ...
T Consensus 41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~-Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~ 117 (487)
T 3oja_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD-LNNNYVQELLVGPSIETLHAANNNISRVSCS 117 (487)
T ss_dssp CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEE-CCSSEEEEEEECTTCCEEECCSSCCCCEEEC
T ss_pred eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEE-ecCCcCCCCCCCCCcCEEECcCCcCCCCCcc
Confidence 3567888885 579999999999999887654443 78888999888 777654 111 112
Q ss_pred CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-ccc-CCCCCCceEEeeecccCCCCchhhh
Q 036414 61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEY-KFPPSLTQLSLSNTELIEDPMPTLE 138 (252)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~-~~~~~L~~l~l~~~~~~~~~~~~l~ 138 (252)
.+++|+.|++++|. .....+..+..+++|+.|++++ +.+... .| .+. .+ ++|++|++++|.++.. ....
T Consensus 118 ~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~---~~~~l~~~l-~~L~~L~Ls~N~l~~~--~~~~ 188 (487)
T 3oja_A 118 RGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKL-NEIDTV---NFAELAASS-DTLEHLNLQYNFIYDV--KGQV 188 (487)
T ss_dssp CCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTT-SCCCEE---EGGGGGGGT-TTCCEEECTTSCCCEE--ECCC
T ss_pred ccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCC-CCCCCc---ChHHHhhhC-CcccEEecCCCccccc--cccc
Confidence 35778888888886 5555566788899999999999 555320 33 454 67 9999999999998744 2234
Q ss_pred cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCC-CCChHHHHhcccc
Q 036414 139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL-RKLPEELWRIKSL 217 (252)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L 217 (252)
.+++|+.|++++|.+.+... . +..+++|+.|++++|. ++.+|..++.+++|+.|++++|+.. ..+|..+..++.|
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~--~-~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGP--E-FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CCTTCCEEECCSSCCCEECG--G-GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred cCCCCCEEECCCCCCCCCCH--h-HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 58999999999999876333 3 5688999999999999 8999888889999999999999876 3556667777777
Q ss_pred ceeecc
Q 036414 218 CKLELH 223 (252)
Q Consensus 218 ~~L~l~ 223 (252)
+.+++.
T Consensus 265 ~~l~~~ 270 (487)
T 3oja_A 265 QTVAKQ 270 (487)
T ss_dssp HHHHHH
T ss_pred cEEecc
Confidence 777663
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=2.8e-17 Score=130.40 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=123.2
Q ss_pred ccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414 17 QKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC 93 (252)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (252)
...++++++++.+ ..+|..+. ++++.|+ ++.+.. .+..++.+++|++|++++|. .....+..+..+++|++
T Consensus 14 ~~~~~l~~~~~~l-~~~p~~~~--~~l~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSL-DSVPSGIP--ADTEKLD-LQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCC-SSCCSCCC--TTCCEEE-CTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCCc-cccCCCCC--CCCCEEE-ccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCE
Confidence 3567788875444 35665444 5788888 777765 44457778888888888885 44444555777888888
Q ss_pred EEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414 94 LKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI 171 (252)
Q Consensus 94 L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 171 (252)
|++++ +.+.. ++ .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+..... .. +..+++|++
T Consensus 88 L~L~~-n~l~~----~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~-~~~l~~L~~ 159 (251)
T 3m19_A 88 LGLAN-NQLAS----LPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GA-FDKLTNLQT 159 (251)
T ss_dssp EECTT-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TT-TTTCTTCCE
T ss_pred EECCC-Ccccc----cChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HH-cCcCcCCCE
Confidence 88887 55544 44 45666 888888888888886666667788888888888887765322 12 567788888
Q ss_pred EEecCCccccceec-cccccccccceeeccCCCCCC
Q 036414 172 LHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRK 206 (252)
Q Consensus 172 L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~ 206 (252)
|++++|+ ++.++. .+..+++|+.|++++|+....
T Consensus 160 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 160 LSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECCCCc-CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888888 776654 467788888888888876543
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.2e-16 Score=126.63 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=129.4
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++.+|..+. +++++|++++|.+....+..+.++++|++|+ ++.+.+ .+..+..+++|++|++++|. ...
T Consensus 23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 97 (251)
T 3m19_A 23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLN-LDYNQLQTLSAGVFDDLTELGTLGLANNQ--LAS 97 (251)
T ss_dssp TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEE-CTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCC
T ss_pred CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEE-CCCCcCCccCHhHhccCCcCCEEECCCCc--ccc
Confidence 467788887665 5889999998888777777788999999999 888876 34447889999999999986 444
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCce
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERK 157 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 157 (252)
..+..+..+++|++|++++ +.+.. ++ .+..+ ++|++|++++|.+....+..++.+++|++|++++|.+....
T Consensus 98 ~~~~~~~~l~~L~~L~L~~-N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGG-NQLKS----LPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cChhHhcccCCCCEEEcCC-CcCCC----cChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 4445677889999999988 56655 55 35677 89999999999998777777888999999999988876533
Q ss_pred eeecCCCCCccccEEEecCCcccc
Q 036414 158 LACVGCSSFPQLKILHLKSMLWLE 181 (252)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~~~~l~ 181 (252)
.. . +..+++|+.|++++|+ +.
T Consensus 172 ~~-~-~~~l~~L~~L~l~~N~-~~ 192 (251)
T 3m19_A 172 HG-A-FDRLGKLQTITLFGNQ-FD 192 (251)
T ss_dssp TT-T-TTTCTTCCEEECCSCC-BC
T ss_pred HH-H-HhCCCCCCEEEeeCCc-ee
Confidence 22 3 5678899999999988 54
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=8.4e-17 Score=130.45 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=138.0
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL 91 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (252)
...+++|++|++++|.+. .++ .+..+++|++|+ ++.+.. ....+..+++|++|++++|. ...++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~-L~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLF-LNGNKLTDIKPLANLKNLGWLFLDENK---VKDLS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEE-CCSSCCCCCGGGTTCTTCCEEECCSSC---CCCGG-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEE-ccCCccCCCcccccCCCCCEEECCCCc---CCCCh-hhccCCCC
Confidence 467889999999976654 343 478899999999 888877 22238899999999999995 33444 48889999
Q ss_pred CeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414 92 ECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI 171 (252)
Q Consensus 92 ~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 171 (252)
++|++++ +.+.. ++.+..+ ++|++|++++|.++.. ..++.+++|++|++++|.+..... ...+++|+.
T Consensus 115 ~~L~L~~-n~i~~----~~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEH-NGISD----INGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQN 182 (291)
T ss_dssp CEEECTT-SCCCC----CGGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCE
T ss_pred CEEECCC-CcCCC----ChhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCE
Confidence 9999998 56655 5677777 9999999999998854 678889999999999988766332 457899999
Q ss_pred EEecCCccccceeccccccccccceeeccCCCCC
Q 036414 172 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 172 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
|++++|. +++++. +..+++|+.|++++|....
T Consensus 183 L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSC-CCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCc-CCCChh-hccCCCCCEEECcCCcccC
Confidence 9999998 888765 7889999999999987643
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=1.4e-16 Score=141.75 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=46.6
Q ss_pred CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCChHHHHhc-ccc
Q 036414 140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWRI-KSL 217 (252)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l-~~L 217 (252)
+++|+.|++++|.+.+.. +.. +.++++|++|++++|+ ++.++ ..++.+++|+.|++++|......|..+..+ ++|
T Consensus 493 l~~L~~L~Ls~N~L~~l~-~~~-f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLS-PTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 569 (635)
T ss_dssp CTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred ccccCEEECCCCccCCcC-hHH-HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence 344444444444443321 112 4456666666666665 55553 334566677777777776654445555555 467
Q ss_pred ceeecccCC
Q 036414 218 CKLELHWPQ 226 (252)
Q Consensus 218 ~~L~l~~~~ 226 (252)
++|+++++|
T Consensus 570 ~~L~L~~Np 578 (635)
T 4g8a_A 570 AFLNLTQND 578 (635)
T ss_dssp CEEECTTCC
T ss_pred CEEEeeCCC
Confidence 778776543
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=3.7e-18 Score=143.73 Aligned_cols=208 Identities=19% Similarity=0.181 Sum_probs=122.2
Q ss_pred hHHHhhccccEEEecCCCC---CCCCCccc-------CCCCCCcEecccCCCCC-------chhhcCCCCCccEEEeecc
Q 036414 11 EDIWMMQKLMHLNFGSITL---PAPPKNYS-------SSLKNLIFISALHPSSC-------TPDILSRLPTVQTLRISGD 73 (252)
Q Consensus 11 ~~i~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~~l~~~~~-------~~~~l~~l~~L~~L~l~~~ 73 (252)
..+..+++|++|++++|.. ...+|..+ ..+++|++|+ ++.+.+ ++..+..+++|++|++++|
T Consensus 54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~-Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR-LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE-CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE-CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 3355677788888876432 22334443 5777788887 777665 2344666778888888777
Q ss_pred CCcccc----chhHhhhcc---------CCCCeEEeeeccch--hHHHHhhc-cccCCCCCCceEEeeecccCCC-----
Q 036414 74 LSHYHS----GVSKSLCEL---------HKLECLKLANQGKM--WQITRMIL-SEYKFPPSLTQLSLSNTELIED----- 132 (252)
Q Consensus 74 ~~~~~~----~~~~~l~~l---------~~L~~L~l~~~~~~--~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~----- 132 (252)
. ... .++..+..+ ++|++|++++ +.+ ..+.. +. .+..+ ++|++|++++|.++..
T Consensus 133 ~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~-l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 133 G--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKE-WAKTFQSH-RLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHH-HHHHHHHC-TTCCEEECCSSCCCHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCCCcHHHHH-HHHHHHhC-CCcCEEECcCCCCCHhHHHHH
Confidence 5 322 233334444 7778887777 333 12000 11 34455 6777777777766522
Q ss_pred CchhhhcCCCCceEEeccCCccC---ceeeecCCCCCccccEEEecCCccccce-----eccc--cccccccceeeccCC
Q 036414 133 PMPTLEKLPHLEVLKLKQNSYFE---RKLACVGCSSFPQLKILHLKSMLWLEEW-----TMGA--GAMPKLESLILNPCA 202 (252)
Q Consensus 133 ~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~--~~l~~L~~L~l~~~~ 202 (252)
.+..+..+++|+.|++++|.+.. ..++.. +..+++|++|++++|. ++.. +..+ +.+++|+.|++++|.
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 12255667777777777776642 112222 4566777777777777 5532 2222 336777777777776
Q ss_pred CCC----CChHHH-HhccccceeecccCC
Q 036414 203 YLR----KLPEEL-WRIKSLCKLELHWPQ 226 (252)
Q Consensus 203 ~~~----~~p~~l-~~l~~L~~L~l~~~~ 226 (252)
... .+|..+ .++++|++|++++++
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 654 366655 456777777777653
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=134.38 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=143.5
Q ss_pred CCcc-ccchHH--HhhccccEEEecCCCCCCCCC----cccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeecc
Q 036414 4 SYID-HSSEDI--WMMQKLMHLNFGSITLPAPPK----NYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGD 73 (252)
Q Consensus 4 ~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~ 73 (252)
+.+. ..|..+ ..+++|++|++++|.+....+ ..+..+++|++|+ ++.+.. .+..++.+++|++|++++|
T Consensus 101 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 101 LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS-IAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE-EECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE-eeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 4444 446666 889999999999888776444 3345789999999 888877 4556889999999999999
Q ss_pred CCcccc--chhHh--hhccCCCCeEEeeeccchhHHHHhhc-c-ccCCCCCCceEEeeecccCCCCchhhhcC---CCCc
Q 036414 74 LSHYHS--GVSKS--LCELHKLECLKLANQGKMWQITRMIL-S-EYKFPPSLTQLSLSNTELIEDPMPTLEKL---PHLE 144 (252)
Q Consensus 74 ~~~~~~--~~~~~--l~~l~~L~~L~l~~~~~~~~~~~l~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~~---~~L~ 144 (252)
. ... .++.. +..+++|++|++++ +.+..+.. .+ . +..+ ++|++|++++|.+....|..++.+ ++|+
T Consensus 180 ~--l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~~~l~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~ 254 (310)
T 4glp_A 180 P--GLGERGLMAALCPHKFPAIQNLALRN-TGMETPTG-VCAALAAAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALN 254 (310)
T ss_dssp T--TCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHH-HHHHHHHHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCC
T ss_pred C--CccchhhhHHHhhhcCCCCCEEECCC-CCCCchHH-HHHHHHhcC-CCCCEEECCCCCCCccchhhHHhccCcCcCC
Confidence 5 222 13322 36789999999999 55522000 22 2 3567 999999999999997767666665 7999
Q ss_pred eEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC
Q 036414 145 VLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
+|++++|.+.. ++.. . +++|++|++++|+ +++++. ...+++|+.|++++|+..+
T Consensus 255 ~L~Ls~N~l~~--lp~~-~--~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 255 SLNLSFAGLEQ--VPKG-L--PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSSCCCS--CCSC-C--CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCCCCc--hhhh-h--cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCCCCC
Confidence 99999999874 2322 2 4899999999999 888866 6789999999999998754
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=7.6e-17 Score=134.03 Aligned_cols=209 Identities=19% Similarity=0.191 Sum_probs=118.4
Q ss_pred CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chh-hcCCCCCccEEE-eeccCCccc
Q 036414 4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPD-ILSRLPTVQTLR-ISGDLSHYH 78 (252)
Q Consensus 4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~-~l~~l~~L~~L~-l~~~~~~~~ 78 (252)
++++++|..+ .+++++|++++|.+....+..+.++++|++|+ ++.|.. ++. .+.++++++++. +..+. ..
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~-Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l~ 93 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE-ISQNDVLEVIEADVFSNLPKLHEIRIEKANN--LL 93 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEE-EECCTTCCEECTTSBCSCTTCCEEEEEEETT--CC
T ss_pred CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEE-CcCCCCCCccChhHhhcchhhhhhhcccCCc--cc
Confidence 4566676655 24677777776555433334567777777777 666654 222 245566665543 33342 22
Q ss_pred cchhHhhhccCCCCeEEeeeccchhHH-------------------HHh--hc--cccCCCCCCceEEeeecccCCCCch
Q 036414 79 SGVSKSLCELHKLECLKLANQGKMWQI-------------------TRM--IL--SEYKFPPSLTQLSLSNTELIEDPMP 135 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------~~l--~~--~~~~~~~~L~~l~l~~~~~~~~~~~ 135 (252)
...+..+..+++|++|++.+ +.+..+ .++ ++ .+..+...++.|++++|+++.. +.
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~ 171 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HN 171 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CT
T ss_pred ccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC-Ch
Confidence 22244556667777777766 333210 000 22 2222223566666666666532 22
Q ss_pred hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhcc
Q 036414 136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIK 215 (252)
Q Consensus 136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 215 (252)
......+|+++.+.++.......... +.++++|++|++++|+ ++.+|.. .+.+|+.|.+.++...+.+|. +..++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTR-IHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred hhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCCC-cCccChh--hhccchHhhhccCCCcCcCCC-chhCc
Confidence 23334567777776433322222222 4677888888888887 7777652 366777777777777777774 66788
Q ss_pred ccceeeccc
Q 036414 216 SLCKLELHW 224 (252)
Q Consensus 216 ~L~~L~l~~ 224 (252)
+|+.+++..
T Consensus 247 ~L~~l~l~~ 255 (350)
T 4ay9_X 247 ALMEASLTY 255 (350)
T ss_dssp SCCEEECSC
T ss_pred ChhhCcCCC
Confidence 888888753
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.7e-16 Score=128.58 Aligned_cols=169 Identities=25% Similarity=0.295 Sum_probs=141.5
Q ss_pred cCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCC
Q 036414 37 SSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKF 115 (252)
Q Consensus 37 l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~ 115 (252)
...+++|+.|+ ++.+.. ..+.+..+++|++|++++|. ...++. +..+++|++|++.+ +.+.. ++.+..+
T Consensus 42 ~~~l~~L~~L~-l~~~~i~~~~~~~~l~~L~~L~L~~n~---l~~~~~-l~~l~~L~~L~l~~-n~l~~----~~~l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQII-ANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LANLKNLGWLFLDE-NKVKD----LSSLKDL 111 (291)
T ss_dssp HHHHHTCCEEE-CTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCS-SCCCC----GGGGTTC
T ss_pred hhhcCcccEEE-ccCCCcccChhHhcCCCCCEEEccCCc---cCCCcc-cccCCCCCEEECCC-CcCCC----ChhhccC
Confidence 46788999999 888876 44568889999999999995 344444 88999999999999 66666 6678888
Q ss_pred CCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccc
Q 036414 116 PPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLES 195 (252)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 195 (252)
++|++|++++|.+... ..+..+++|+.|++++|.+... . . ...+++|+.|++++|. +++++. ++.+++|+.
T Consensus 112 -~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~-~-l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 112 -KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQN 182 (291)
T ss_dssp -TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G-G-GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred -CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h-h-hccCCCCCEEEccCCc-cccchh-hcCCCccCE
Confidence 9999999999999853 5688999999999999988764 2 3 6689999999999998 888766 888999999
Q ss_pred eeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 196 LILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 196 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
|++++|... .++. +..+++|+.|++++++
T Consensus 183 L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKNHIS-DLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCC-BCGG-GTTCTTCSEEEEEEEE
T ss_pred EECCCCcCC-CChh-hccCCCCCEEECcCCc
Confidence 999999764 5664 7889999999998763
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=3.6e-17 Score=140.52 Aligned_cols=41 Identities=5% Similarity=-0.088 Sum_probs=22.0
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCC
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNL 43 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 43 (252)
++.++++|.+++++++|++|++++|.+...+|..++.+.+|
T Consensus 20 ~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L 60 (454)
T 1jl5_A 20 SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60 (454)
T ss_dssp --------------CCHHHHHHHHHHHHHTSCTTSCCCHHH
T ss_pred cCchhhCChhHhcccchhhhhccCCcccccCCcccccchhc
Confidence 46778899999999999999999887777788888777654
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=2.5e-16 Score=139.56 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=126.5
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL 91 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (252)
+..+.+|+.|++++|.+. .++ .+..+++|+.|+ ++.+.+ ....+..+++|+.|+|++|. ...++ .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~-Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLF-LNGNKLTDIKPLTNLKNLGWLFLDENK---IKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEE-CTTSCCCCCGGGGGCTTCCEEECCSSC---CCCCT-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEE-eeCCCCCCChhhccCCCCCEEECcCCC---CCCCh-hhccCCCC
Confidence 467888888888865543 333 478888888888 877776 22237788888888888884 33333 67788888
Q ss_pred CeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414 92 ECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI 171 (252)
Q Consensus 92 ~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 171 (252)
+.|++++ +.+.. ++.+..+ ++|+.|++++|.+... ..++.+++|+.|++++|.+..... +..+++|+.
T Consensus 112 ~~L~Ls~-N~l~~----l~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEH-NGISD----INGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQN 179 (605)
T ss_dssp CEEECTT-SCCCC----CGGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCE
T ss_pred CEEEecC-CCCCC----CccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCE
Confidence 8888887 55555 5567777 8888888888888743 567788888888888887765322 457888888
Q ss_pred EEecCCccccceeccccccccccceeeccCCCCC
Q 036414 172 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 172 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
|+|++|. +++++. +..+++|+.|++++|....
T Consensus 180 L~Ls~N~-i~~l~~-l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 180 LYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EECCSSC-CCBCGG-GTTCTTCSEEECCSEEEEC
T ss_pred EECcCCC-CCCChH-HccCCCCCEEEccCCcCcC
Confidence 8888887 777753 6778888888888887543
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=9.2e-16 Score=117.18 Aligned_cols=149 Identities=18% Similarity=0.280 Sum_probs=99.2
Q ss_pred CCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch-hHHHHhhc-cccC
Q 036414 38 SSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM-WQITRMIL-SEYK 114 (252)
Q Consensus 38 ~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~ 114 (252)
..+++|++|+ ++.+.. ..+.+..+++|++|++++|. ...+ ..+..+++|++|++.+ +.+ .. .+ .+..
T Consensus 41 ~~l~~L~~L~-l~~n~i~~l~~l~~l~~L~~L~l~~n~---~~~~-~~l~~l~~L~~L~l~~-n~l~~~----~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYIT-LANINVTDLTGIEYAHNIKDLTINNIH---ATNY-NPISGLSNLERLRIMG-KDVTSD----KIPNLSG 110 (197)
T ss_dssp HHHHTCCEEE-EESSCCSCCTTGGGCTTCSEEEEESCC---CSCC-GGGTTCTTCCEEEEEC-TTCBGG----GSCCCTT
T ss_pred hhcCCccEEe-ccCCCccChHHHhcCCCCCEEEccCCC---CCcc-hhhhcCCCCCEEEeEC-CccCcc----cChhhcC
Confidence 4556666666 665555 22256667777777777773 2222 3566677777777777 444 22 23 6666
Q ss_pred CCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC-ccCceeeecCCCCCccccEEEecCCccccceeccccccccc
Q 036414 115 FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS-YFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKL 193 (252)
Q Consensus 115 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L 193 (252)
+ ++|++|++++|.++...+..++.+++|++|++++|. +... . . ...+++|+.|++++|+ +++++ .+..+++|
T Consensus 111 l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~-l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 111 L-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-P-LKTLPELKSLNIQFDG-VHDYR-GIEDFPKL 183 (197)
T ss_dssp C-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-G-GGGCSSCCEEECTTBC-CCCCT-TGGGCSSC
T ss_pred C-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-h-hcCCCCCCEEECCCCC-CcChH-HhccCCCC
Confidence 6 788888888887776667777788888888887776 4432 1 2 5577888888888887 77666 46778888
Q ss_pred cceeeccCCC
Q 036414 194 ESLILNPCAY 203 (252)
Q Consensus 194 ~~L~l~~~~~ 203 (252)
+.|++++|..
T Consensus 184 ~~L~l~~N~i 193 (197)
T 4ezg_A 184 NQLYAFSQTI 193 (197)
T ss_dssp CEEEECBC--
T ss_pred CEEEeeCccc
Confidence 8888888764
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=2.3e-16 Score=131.73 Aligned_cols=216 Identities=18% Similarity=0.176 Sum_probs=110.9
Q ss_pred CCCccccchH-HHhhccccEEEecCCCCCCCCC----cccCCCC-CCcEecccCCCCC---chhhcCCC-----CCccEE
Q 036414 3 SSYIDHSSED-IWMMQKLMHLNFGSITLPAPPK----NYSSSLK-NLIFISALHPSSC---TPDILSRL-----PTVQTL 68 (252)
Q Consensus 3 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~~l~~~~~---~~~~l~~l-----~~L~~L 68 (252)
.+.++..... +...++|++|++++|.+....+ ..+..++ +|++|+ ++.|.+ .+..+..+ ++|++|
T Consensus 7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~-Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLN-LSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEE-CCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEE-CcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 4555544333 3444447888887766655444 5566676 777777 777665 23333332 777777
Q ss_pred EeeccCCccccchhH----hhhcc-CCCCeEEeeeccchhHH--HHhhc-cccCCCCCCceEEeeecccCCCCchhh---
Q 036414 69 RISGDLSHYHSGVSK----SLCEL-HKLECLKLANQGKMWQI--TRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTL--- 137 (252)
Q Consensus 69 ~l~~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~--~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l--- 137 (252)
++++|. .....+. .+..+ ++|++|++++ +.+... .. +. .+..++++|++|++++|.+++.....+
T Consensus 86 ~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 86 NLSGNF--LSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSE-FKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp ECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHH-HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ECcCCc--CChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHH-HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777775 3323332 34444 6777777777 334220 00 11 223323566777777666664433332
Q ss_pred -hcCC-CCceEEeccCCccCceee---ecCCCCC-ccccEEEecCCccccc-----eeccccc-cccccceeeccCCCCC
Q 036414 138 -EKLP-HLEVLKLKQNSYFERKLA---CVGCSSF-PQLKILHLKSMLWLEE-----WTMGAGA-MPKLESLILNPCAYLR 205 (252)
Q Consensus 138 -~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~l~~-----~~~~~~~-l~~L~~L~l~~~~~~~ 205 (252)
...+ +|++|++++|.+...... .. ...+ ++|++|++++|. +++ ++..+.. .++|+.|++++|...+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKF-LASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHH-HHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3333 666666666665432211 01 1233 366666666666 544 2222222 2356666666665443
Q ss_pred CChH----HHHhccccceeecccC
Q 036414 206 KLPE----ELWRIKSLCKLELHWP 225 (252)
Q Consensus 206 ~~p~----~l~~l~~L~~L~l~~~ 225 (252)
.-+. .+..+++|++|+++++
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccC
Confidence 2221 1233455555555544
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=3.1e-16 Score=120.76 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=94.5
Q ss_pred CCCcEecccCCCCC--ch-hhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCC
Q 036414 41 KNLIFISALHPSSC--TP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKF 115 (252)
Q Consensus 41 ~~L~~L~~l~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~ 115 (252)
++|++|+ ++.+.. .+ ..++.+++|++|++++|. .....+..+..+++|++|++++ +.+.. ++ .+..+
T Consensus 28 ~~l~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~-n~l~~----~~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLD-LETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLST-NQLQS----LPNGVFDKL 99 (208)
T ss_dssp TTCSEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC
T ss_pred CCCcEEE-cCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEECCC-CcCCc----cCHhHhcCc
Confidence 3566666 555544 22 224566666666666664 2222223345666777777766 44433 34 34556
Q ss_pred CCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccc
Q 036414 116 PPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLES 195 (252)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 195 (252)
++|++|++++|.+....+..+..+++|+.|++++|.+...... . +..+++|++|++++|+ + .+.+++|+.
T Consensus 100 -~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~-~~~l~~L~~L~l~~N~-~------~~~~~~l~~ 169 (208)
T 2o6s_A 100 -TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-V-FDRLTSLQYIWLHDNP-W------DCTCPGIRY 169 (208)
T ss_dssp -TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-T-TTTCTTCCEEECCSCC-B------CCCTTTTHH
T ss_pred -cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH-H-hccCCCccEEEecCCC-e------ecCCCCHHH
Confidence 7777777777777755555667777777777777766542221 2 4567777777777776 2 245667777
Q ss_pred eeeccCCCCCCChHHHHhcc
Q 036414 196 LILNPCAYLRKLPEELWRIK 215 (252)
Q Consensus 196 L~l~~~~~~~~~p~~l~~l~ 215 (252)
|+++.|...+.+|..++.++
T Consensus 170 L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHhCCceeeccCcccc
Confidence 77777776666776555444
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.6e-16 Score=119.50 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=126.5
Q ss_pred CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhc
Q 036414 60 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEK 139 (252)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~ 139 (252)
+.+++|+.|+++++. ...++ .+..+++|++|++.+| .+.. ++.+..+ ++|++|++++|.++...+..++.
T Consensus 41 ~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~l~~n-~~~~----~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANIN---VTDLT-GIEYAHNIKDLTINNI-HATN----YNPISGL-SNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSC---CSCCT-TGGGCTTCSEEEEESC-CCSC----CGGGTTC-TTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCC---ccChH-HHhcCCCCCEEEccCC-CCCc----chhhhcC-CCCCEEEeECCccCcccChhhcC
Confidence 557899999999995 44556 6889999999999995 5554 5577888 99999999999998767888899
Q ss_pred CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccce
Q 036414 140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCK 219 (252)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 219 (252)
+++|++|++++|.+....+. . ...+++|++|++++|..+++++ .++.+++|+.|++++|... .++ .+..+++|++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~-~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILT-K-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQ 185 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHH-H-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCE
T ss_pred CCCCCEEEecCCccCcHhHH-H-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCE
Confidence 99999999999988763333 3 5689999999999998677776 4888999999999999875 455 6788999999
Q ss_pred eecccCC
Q 036414 220 LELHWPQ 226 (252)
Q Consensus 220 L~l~~~~ 226 (252)
|++.+.+
T Consensus 186 L~l~~N~ 192 (197)
T 4ezg_A 186 LYAFSQT 192 (197)
T ss_dssp EEECBC-
T ss_pred EEeeCcc
Confidence 9998875
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=4.1e-17 Score=140.20 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHhhccccEEEecCCCCCC----CCCcccCCCCCCcEecccCCCCC---chhhc-CCCC----CccEEEeeccCCccc--
Q 036414 13 IWMMQKLMHLNFGSITLPA----PPKNYSSSLKNLIFISALHPSSC---TPDIL-SRLP----TVQTLRISGDLSHYH-- 78 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~~l~~~~~---~~~~l-~~l~----~L~~L~l~~~~~~~~-- 78 (252)
+..+++|++|++++|.+.. .++..+..+++|++|+ ++.+.. .+..+ ..+. +|++|++++|. ..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~-Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~ 100 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN-LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC--LTGA 100 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEE-CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC--CBGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEe-CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC--CCHH
Confidence 4455555555555544332 2233444555555555 555444 11111 1122 45555555553 22
Q ss_pred --cchhHhhhccCCCCeEEeee
Q 036414 79 --SGVSKSLCELHKLECLKLAN 98 (252)
Q Consensus 79 --~~~~~~l~~l~~L~~L~l~~ 98 (252)
..++..+..+++|++|++++
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCS
T ss_pred HHHHHHHHHccCCceeEEECCC
Confidence 23444555555555555555
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=7.5e-16 Score=135.30 Aligned_cols=173 Identities=15% Similarity=0.186 Sum_probs=125.4
Q ss_pred cccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414 18 KLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 95 (252)
Q Consensus 18 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (252)
++++|++++|.+.. +|..+. ++|+.|+ ++.|.+ +| +.+++|+.|++++|. ...+|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~-Ls~N~l~~ip---~~l~~L~~L~Ls~N~---l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLE-ITQNALISLP---ELPASLEYLDACDNR---LSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEE-CCSSCCSCCC---CCCTTCCEEECCSSC---CSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEE-CcCCCCcccc---cccCCCCEEEccCCC---CCCcch-hhc--CCCEEE
Confidence 88899998776654 666553 7888888 888877 44 567889999998885 333565 444 888888
Q ss_pred eeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEec
Q 036414 96 LANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLK 175 (252)
Q Consensus 96 l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 175 (252)
+++ +.+.. +|. .+ ++|+.|++++|.++. .|. .+++|+.|++++|.+..... . . ++|+.|+++
T Consensus 127 Ls~-N~l~~----lp~--~l-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l--~--~~L~~L~Ls 188 (571)
T 3cvr_A 127 VDN-NQLTM----LPE--LP-ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--L--P--ESLEALDVS 188 (571)
T ss_dssp CCS-SCCSC----CCC--CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--C--C--TTCCEEECC
T ss_pred CCC-CcCCC----CCC--cC-ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--h--h--CCCCEEECc
Confidence 888 55555 565 44 888888888888875 333 46788888888887765221 2 1 788888888
Q ss_pred CCccccceeccccccccc-------cceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 176 SMLWLEEWTMGAGAMPKL-------ESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 176 ~~~~l~~~~~~~~~l~~L-------~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+|. ++.++. +.. +| +.|++++|... .+|..+..+++|+.|++++++
T Consensus 189 ~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 189 TNL-LESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSC-CSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CCC-CCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 887 777766 433 66 88888888764 688877778888888888875
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=5e-15 Score=131.45 Aligned_cols=193 Identities=19% Similarity=0.193 Sum_probs=113.9
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
.++.++.+|. .+++|++|++++|.+. .+|. .+++|++|+ ++.|.+ ++. .+++|+.|++++|. ..
T Consensus 69 ~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~-Ls~N~l~~l~~---~l~~L~~L~L~~N~---l~ 134 (622)
T 3g06_A 69 PDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS-IFSNPLTHLPA---LPSGLCKLWIFGNQ---LT 134 (622)
T ss_dssp CSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE-ECSCCCCCCCC---CCTTCCEEECCSSC---CS
T ss_pred cCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE-CcCCcCCCCCC---CCCCcCEEECCCCC---CC
Confidence 3567777776 5678888888866644 4554 566777777 666654 222 33444555544442 22
Q ss_pred chhHhhhccCCCCeEEeeeccchhHH-------HHh---------hccccCCCCCCceEEeeecccCCCCc--hhh----
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQI-------TRM---------ILSEYKFPPSLTQLSLSNTELIEDPM--PTL---- 137 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~l---------~~~~~~~~~~L~~l~l~~~~~~~~~~--~~l---- 137 (252)
.+|. .+++|++|++++ +.+..+ +.| +| .. +++|+.|++++|.++.... ..+
T Consensus 135 ~lp~---~l~~L~~L~Ls~-N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~-~~~L~~L~Ls~N~l~~l~~~~~~L~~L~ 207 (622)
T 3g06_A 135 SLPV---LPPGLQELSVSD-NQLASLPALPSELCKLWAYNNQLTSLP--ML-PSGLQELSVSDNQLASLPTLPSELYKLW 207 (622)
T ss_dssp CCCC---CCTTCCEEECCS-SCCSCCCCCCTTCCEEECCSSCCSCCC--CC-CTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred cCCC---CCCCCCEEECcC-CcCCCcCCccCCCCEEECCCCCCCCCc--cc-CCCCcEEECCCCCCCCCCCccchhhEEE
Confidence 2222 123344444433 111110 000 11 11 1445555555554442110 000
Q ss_pred ----------hcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCC
Q 036414 138 ----------EKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKL 207 (252)
Q Consensus 138 ----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~ 207 (252)
..+++|+.|++++|.+... ...+++|+.|++++|. ++.++. .+++|+.|++++|... .+
T Consensus 208 L~~N~l~~l~~~~~~L~~L~Ls~N~L~~l------p~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~-~l 276 (622)
T 3g06_A 208 AYNNRLTSLPALPSGLKELIVSGNRLTSL------PVLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLT-RL 276 (622)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCCSCC------CCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCC-SC
T ss_pred CcCCcccccCCCCCCCCEEEccCCccCcC------CCCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCCCC-cC
Confidence 1236677777777766541 1356889999999988 887766 6788999999999765 78
Q ss_pred hHHHHhccccceeecccCC
Q 036414 208 PEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 208 p~~l~~l~~L~~L~l~~~~ 226 (252)
|..+..+++|+.|++++++
T Consensus 277 p~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 277 PESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CGGGGGSCTTCEEECCSCC
T ss_pred CHHHhhccccCEEEecCCC
Confidence 9889999999999999886
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=8.4e-16 Score=136.16 Aligned_cols=188 Identities=23% Similarity=0.278 Sum_probs=149.7
Q ss_pred hccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeE
Q 036414 16 MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECL 94 (252)
Q Consensus 16 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 94 (252)
+.++..+.+..+.... + ..+..+.+|+.|+ ++.+.+ .++.+..+++|+.|+|++|. ...++. +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~-~-~~~~~L~~L~~L~-l~~n~i~~l~~l~~l~~L~~L~Ls~N~---l~~~~~-l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTD-A-VTQNELNSIDQII-ANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTS-E-ECHHHHTTCCCCB-CTTCCCCCCTTGGGCTTCCEEECTTSC---CCCCGG-GGGCTTCCEE
T ss_pred HHHHHHHhccCCCccc-c-cchhcCCCCCEEE-CcCCCCCCChHHccCCCCCEEEeeCCC---CCCChh-hccCCCCCEE
Confidence 3445555565333322 2 2256788999999 888877 45578899999999999995 344444 8899999999
Q ss_pred EeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEe
Q 036414 95 KLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174 (252)
Q Consensus 95 ~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 174 (252)
++++ +.+.. ++.+..+ ++|+.|++++|.+.. +..+..+++|+.|++++|.+... .. +..+++|+.|+|
T Consensus 93 ~Ls~-N~l~~----l~~l~~l-~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l---~~-l~~l~~L~~L~L 160 (605)
T 1m9s_A 93 FLDE-NKIKD----LSSLKDL-KKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI---TV-LSRLTKLDTLSL 160 (605)
T ss_dssp ECCS-SCCCC----CTTSTTC-TTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC---GG-GGSCTTCSEEEC
T ss_pred ECcC-CCCCC----ChhhccC-CCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc---hh-hcccCCCCEEEC
Confidence 9999 56655 6678888 999999999999984 35688999999999999988764 23 678999999999
Q ss_pred cCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414 175 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 175 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 226 (252)
++|. +..++. +..+++|+.|++++|... .++ .+..+++|+.|++++++
T Consensus 161 s~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 161 EDNQ-ISDIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSSC-CCCCGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEE
T ss_pred cCCc-CCCchh-hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCc
Confidence 9999 887766 889999999999999875 455 57889999999999764
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=1.7e-17 Score=138.54 Aligned_cols=214 Identities=15% Similarity=0.148 Sum_probs=151.5
Q ss_pred CCCccccc-----hHHHhhc-cccEEEecCCCCCCCCCcccCCC-----CCCcEecccCCCCC---chhh----cCCC-C
Q 036414 3 SSYIDHSS-----EDIWMMQ-KLMHLNFGSITLPAPPKNYSSSL-----KNLIFISALHPSSC---TPDI----LSRL-P 63 (252)
Q Consensus 3 ~~~l~~lp-----~~i~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~~l~~~~~---~~~~----l~~l-~ 63 (252)
++.++..+ ..+..++ +|++|++++|.+....+..+..+ ++|++|+ ++.|.. .+.. +..+ +
T Consensus 31 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~-Ls~n~l~~~~~~~l~~~l~~~~~ 109 (362)
T 3goz_A 31 LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN-LSGNFLSYKSSDELVKTLAAIPF 109 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE-CCSSCGGGSCHHHHHHHHHTSCT
T ss_pred CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE-CcCCcCChHHHHHHHHHHHhCCC
Confidence 46677776 5677888 89999999888877666666665 8999999 998876 2332 4445 8
Q ss_pred CccEEEeeccCCccccchh----Hhhhcc-CCCCeEEeeeccchh-----HHHHhhc-cccCCCCCCceEEeeecccCCC
Q 036414 64 TVQTLRISGDLSHYHSGVS----KSLCEL-HKLECLKLANQGKMW-----QITRMIL-SEYKFPPSLTQLSLSNTELIED 132 (252)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~~~-----~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~ 132 (252)
+|++|++++|. .....+ ..+..+ ++|++|++++ +.+. . ++ .+...+++|++|++++|.++..
T Consensus 110 ~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 110 TITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDE----LIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp TCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHH----HHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred CccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHH----HHHHHhcCCccccEeeecCCCCchh
Confidence 99999999997 333333 334443 6999999998 4442 3 44 5556634999999999999877
Q ss_pred Cchhhh----cC-CCCceEEeccCCccCceee---ecCCCC-CccccEEEecCCcccccee-----ccccccccccceee
Q 036414 133 PMPTLE----KL-PHLEVLKLKQNSYFERKLA---CVGCSS-FPQLKILHLKSMLWLEEWT-----MGAGAMPKLESLIL 198 (252)
Q Consensus 133 ~~~~l~----~~-~~L~~L~l~~~~~~~~~~~---~~~~~~-~~~L~~L~l~~~~~l~~~~-----~~~~~l~~L~~L~l 198 (252)
.+..+. .+ ++|++|++++|.+...... .. ... .++|++|++++|. +++.. .....+++|+.|++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEe
Confidence 765443 45 5999999999987652211 11 222 4589999999998 76542 33467889999999
Q ss_pred ccCCCCCCC-------hHHHHhccccceeecccCC
Q 036414 199 NPCAYLRKL-------PEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 199 ~~~~~~~~~-------p~~l~~l~~L~~L~l~~~~ 226 (252)
++|.....- +..+..+++|+.|+++++.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 999733221 2234566788889998764
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=4.6e-15 Score=130.29 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=142.6
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
.++.++.+|..+. ++|++|++++|.+. .+| ..+++|++|+ ++.|.+ +|. ++. +|+.|++++|. ..
T Consensus 67 s~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~-Ls~N~l~~ip~-l~~--~L~~L~Ls~N~---l~ 133 (571)
T 3cvr_A 67 NRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD-ACDNRLSTLPE-LPA--SLKHLDVDNNQ---LT 133 (571)
T ss_dssp CSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE-CCSSCCSCCCC-CCT--TCCEEECCSSC---CS
T ss_pred CCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE-ccCCCCCCcch-hhc--CCCEEECCCCc---CC
Confidence 4678888998764 78999999987766 677 5678999999 998877 555 554 99999999995 34
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA 159 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 159 (252)
.+|. .+++|+.|++++ +.+.. +|. .+ ++|++|++++|.++. .|. +. ++|+.|++++|.+.....
T Consensus 134 ~lp~---~l~~L~~L~Ls~-N~l~~----lp~--~l-~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 134 MLPE---LPALLEYINADN-NQLTM----LPE--LP-TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp CCCC---CCTTCCEEECCS-SCCSC----CCC--CC-TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CCCC---cCccccEEeCCC-CccCc----CCC--cC-CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-
Confidence 4665 689999999999 65655 564 34 899999999999986 444 54 899999999998874322
Q ss_pred ecCCCCCccc-------cEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccc
Q 036414 160 CVGCSSFPQL-------KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKS 216 (252)
Q Consensus 160 ~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 216 (252)
+. .+| +.|++++|. ++.+|..+..+++|+.|++++|+..+..|..+..+..
T Consensus 198 ~~-----~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 VP-----VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-------------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HH-----HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 22 156 999999999 9999988888999999999999988777877766543
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.5e-15 Score=116.92 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=128.0
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCcccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
++.++++|..+ .++|++|++++|.+....+..+..+++|++|+ ++.+.+ .+. .+..+++|++|++++|. ...
T Consensus 16 ~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~ 90 (208)
T 2o6s_A 16 SQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLY-LGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--LQS 90 (208)
T ss_dssp SSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred CCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEE-CCCCccCccChhhcCCCCCcCEEECCCCc--CCc
Confidence 45677777655 35899999998877755555678899999999 888776 333 36789999999999985 333
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCce
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERK 157 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 157 (252)
..+..+..+++|++|++++ +.+.. ++ .+..+ ++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~-N~l~~----~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~---- 160 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNT-NQLQS----LPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW---- 160 (208)
T ss_dssp CCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred cCHhHhcCccCCCEEEcCC-CcCcc----cCHhHhccC-CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe----
Confidence 3334568899999999988 55655 45 46777 8999999999998876667788899999999988754
Q ss_pred eeecCCCCCccccEEEecCCccccceecccccccc
Q 036414 158 LACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK 192 (252)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 192 (252)
.+.++.|+.|+++.|..-..+|..++.++.
T Consensus 161 -----~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 -----DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 345788999988888833356776666553
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=3e-15 Score=128.59 Aligned_cols=75 Identities=23% Similarity=0.218 Sum_probs=41.5
Q ss_pred CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC--CChHHHHhc-----
Q 036414 142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR--KLPEELWRI----- 214 (252)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l----- 214 (252)
+|+.|++++|.+.+ + ...+++|++|++++|. +++++. .+++|+.|++++|...+ .+|..+..+
T Consensus 318 ~L~~L~Ls~N~l~~--l----p~~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 318 SLEELNVSNNKLIE--L----PALPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp TCCEEECCSSCCSC--C----CCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred cCCEEECCCCcccc--c----cccCCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 55666665555443 1 1235678888887777 676665 46788888888888766 567666666
Q ss_pred --------cccceeecccCC
Q 036414 215 --------KSLCKLELHWPQ 226 (252)
Q Consensus 215 --------~~L~~L~l~~~~ 226 (252)
++|++|++++++
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp --------------------
T ss_pred ccccccccCcCCEEECCCCc
Confidence 778888887764
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=4.8e-15 Score=131.56 Aligned_cols=193 Identities=17% Similarity=0.083 Sum_probs=119.4
Q ss_pred CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414 2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS 79 (252)
Q Consensus 2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (252)
.++.++.+|..+. ++|++|++++|.+. .+|. .+++|++|+ ++.|.+ ++. .+++|++|++++|. ..
T Consensus 48 s~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~-Ls~N~l~~lp~---~l~~L~~L~Ls~N~---l~ 114 (622)
T 3g06_A 48 GESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE-VSGNQLTSLPV---LPPGLLELSIFSNP---LT 114 (622)
T ss_dssp CSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE-ECSCCCSCCCC---CCTTCCEEEECSCC---CC
T ss_pred cCCCcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE-cCCCcCCcCCC---CCCCCCEEECcCCc---CC
Confidence 3567778887665 68888888866654 5555 567888888 887776 343 67888888888884 44
Q ss_pred chhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCC--chhhhc--------------CCCC
Q 036414 80 GVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDP--MPTLEK--------------LPHL 143 (252)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~--------------~~~L 143 (252)
.++. .+++|+.|++.+ +.+.. +|. .+ ++|++|++++|.++... +..+.. +++|
T Consensus 115 ~l~~---~l~~L~~L~L~~-N~l~~----lp~--~l-~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L 183 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFG-NQLTS----LPV--LP-PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGL 183 (622)
T ss_dssp CCCC---CCTTCCEEECCS-SCCSC----CCC--CC-TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred CCCC---CCCCcCEEECCC-CCCCc----CCC--CC-CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCC
Confidence 4444 567888888887 44544 442 13 77788888777766321 111211 2667
Q ss_pred ceEEeccCCccCceeeecC--------------CCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChH
Q 036414 144 EVLKLKQNSYFERKLACVG--------------CSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE 209 (252)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~--------------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 209 (252)
+.|++++|.+......... ...+++|+.|++++|. ++.++ ..+++|+.|++++|... .+|.
T Consensus 184 ~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~-~lp~ 258 (622)
T 3g06_A 184 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLP---VLPSELKELMVSGNRLT-SLPM 258 (622)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC
T ss_pred cEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCC-cCCc
Confidence 7777777665431100000 0112456666666665 55554 34566777777776543 5555
Q ss_pred HHHhccccceeecccCC
Q 036414 210 ELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 210 ~l~~l~~L~~L~l~~~~ 226 (252)
.+++|+.|+++++.
T Consensus 259 ---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp ---CCTTCCEEECCSSC
T ss_pred ---ccccCcEEeCCCCC
Confidence 46677777777663
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=2e-17 Score=142.18 Aligned_cols=60 Identities=23% Similarity=0.127 Sum_probs=34.8
Q ss_pred CccccEEEecCCcccccee-cccc-----ccccccceeeccCCCCC----CChHHHHhccccceeecccCC
Q 036414 166 FPQLKILHLKSMLWLEEWT-MGAG-----AMPKLESLILNPCAYLR----KLPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 166 ~~~L~~L~l~~~~~l~~~~-~~~~-----~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~ 226 (252)
+++|++|++++|. +++.. ..+. ..++|+.|++++|...+ .+|..+..+++|++|++++++
T Consensus 340 ~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 340 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4566666666665 44321 1111 14567777777776543 456666667777777777664
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=4.1e-15 Score=118.71 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=106.2
Q ss_pred CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccc
Q 036414 3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
.+.++.++ .+..+++|++|++++|.+. .++ .+..+++|++|+ ++.+.+ .+. ++.+++|++|++++|. ...
T Consensus 28 ~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~-L~~N~i~~~~~-l~~l~~L~~L~L~~N~---l~~ 99 (263)
T 1xeu_A 28 KQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELH-LSHNQISDLSP-LKDLTKLEELSVNRNR---LKN 99 (263)
T ss_dssp CSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEE-CCSSCCCCCGG-GTTCSSCCEEECCSSC---CSC
T ss_pred CCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEE-CCCCccCCChh-hccCCCCCEEECCCCc---cCC
Confidence 35566666 5677788888888866543 344 577778888888 777766 333 7778888888888774 333
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC 160 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 160 (252)
++.. .. ++|+.|++++ +.+.. ++.+..+ ++|+.|++++|.++.. ..++.+++|+.|++++|.+.+. .
T Consensus 100 l~~~-~~-~~L~~L~L~~-N~l~~----~~~l~~l-~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~ 166 (263)
T 1xeu_A 100 LNGI-PS-ACLSRLFLDN-NELRD----TDSLIHL-KNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---G 166 (263)
T ss_dssp CTTC-CC-SSCCEEECCS-SCCSB----SGGGTTC-TTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---T
T ss_pred cCcc-cc-CcccEEEccC-CccCC----ChhhcCc-ccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---H
Confidence 3332 22 7788888877 55544 5566666 7888888888777643 3567777888888877776654 2
Q ss_pred cCCCCCccccEEEecCCccccce
Q 036414 161 VGCSSFPQLKILHLKSMLWLEEW 183 (252)
Q Consensus 161 ~~~~~~~~L~~L~l~~~~~l~~~ 183 (252)
. ...+++|+.|++++|+ +...
T Consensus 167 ~-l~~l~~L~~L~l~~N~-~~~~ 187 (263)
T 1xeu_A 167 G-LTRLKKVNWIDLTGQK-CVNE 187 (263)
T ss_dssp T-STTCCCCCEEEEEEEE-EECC
T ss_pred H-hccCCCCCEEeCCCCc-ccCC
Confidence 3 5677778888887777 5433
No 102
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=2.8e-15 Score=133.38 Aligned_cols=183 Identities=15% Similarity=0.074 Sum_probs=119.8
Q ss_pred CccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hhhcCCCCCccEEEeeccCCccccch
Q 036414 5 YIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PDILSRLPTVQTLRISGDLSHYHSGV 81 (252)
Q Consensus 5 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (252)
+++++|..+. ..+++|++++|.+....+..|.++++|++|+ ++.|.+ + +..+.++++|++|+|++|. ...+
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~-Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~---l~~l 115 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD-LSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSL 115 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEE
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEE-CCCCcCCCcChhHhcCCCCCCEEEccCCc---CCCC
Confidence 5667776543 3678888887776655556788888888888 888776 3 3347788888888888884 3344
Q ss_pred h-HhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC-CchhhhcCCCCceEEeccCCccCce
Q 036414 82 S-KSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED-PMPTLEKLPHLEVLKLKQNSYFERK 157 (252)
Q Consensus 82 ~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~ 157 (252)
+ ..+.++++|++|++.+ +.+.. ++ .++.+ ++|++|++++|.+... .+..++.+++|++|++++|.+....
T Consensus 116 ~~~~f~~L~~L~~L~Ls~-N~l~~----l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVE-TNLAS----LENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CGGGGTTCTTCCEEECTT-SCCCC----STTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CHHHhcCCCCCCEEECCC-CcCCC----CChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 4 4577888888888887 45544 44 46777 8888888888877643 4566778888888888877765422
Q ss_pred eeecCCCCCc----cccEEEecCCccccceeccccccccccceeeccCC
Q 036414 158 LACVGCSSFP----QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA 202 (252)
Q Consensus 158 ~~~~~~~~~~----~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 202 (252)
.. . +..++ ....++++.+. ++.++........++.+++.++.
T Consensus 190 ~~-~-l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 190 CT-D-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp GG-G-GHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCC
T ss_pred cc-c-ccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhccc
Confidence 11 1 11222 23356666666 55554444333445555555543
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=7e-15 Score=122.15 Aligned_cols=199 Identities=16% Similarity=0.119 Sum_probs=120.4
Q ss_pred HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccccchhH-hhhcc
Q 036414 13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYHSGVSK-SLCEL 88 (252)
Q Consensus 13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l 88 (252)
++.|.. ++++-+++.+ ..+|..+ .+++++|+ ++.+.+ ++. .+.++++|++|++++|. ....++. .+.++
T Consensus 6 ~C~C~~-~~v~C~~~~L-t~iP~~l--~~~l~~L~-Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--i~~~i~~~~f~~L 78 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKV-TEIPSDL--PRNAIELR-FVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNL 78 (350)
T ss_dssp SSEEET-TEEEEESTTC-CSCCTTC--CTTCSEEE-EESCCCSEECTTSSTTCTTCCEEEEECCT--TCCEECTTSBCSC
T ss_pred ccEeeC-CEEEecCCCC-CccCcCc--CCCCCEEE-ccCCcCCCcCHHHHcCCCCCCEEECcCCC--CCCccChhHhhcc
Confidence 344443 5566664443 4677655 36899999 999887 554 47899999999999996 4455553 56788
Q ss_pred CCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCC
Q 036414 89 HKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF 166 (252)
Q Consensus 89 ~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 166 (252)
++++++....++.+.. ++ .+..+ ++|+++++++|.+....+..+....++..+++.++.......... +.+.
T Consensus 79 ~~l~~~l~~~~N~l~~----l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-f~~~ 152 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLY----INPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGL 152 (350)
T ss_dssp TTCCEEEEEEETTCCE----ECTTSBCCC-TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-STTS
T ss_pred hhhhhhhcccCCcccc----cCchhhhhc-cccccccccccccccCCchhhcccchhhhhhhccccccccccccc-hhhc
Confidence 9988866665576655 54 66778 999999999999886555555455556666664432211111111 2222
Q ss_pred -ccccEEEecCCccccceeccccccccccceeeccCCCCCCChHH-HHhccccceeecccC
Q 036414 167 -PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWRIKSLCKLELHWP 225 (252)
Q Consensus 167 -~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~ 225 (252)
..++.|++++|. +++++.......+|+.+.+.+++..+.+|.. +..+++|++|+++++
T Consensus 153 ~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 153 SFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp BSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred chhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 235555565555 5555444434445555555544444445432 344555555555543
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=7.3e-15 Score=114.87 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=79.9
Q ss_pred cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchh-HhhhccCCCCeEE
Q 036414 20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLK 95 (252)
Q Consensus 20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~ 95 (252)
+.++.+++. ...+|..+. ++|++|+ ++.+.+ .+..+..+++|++|++++|. . ..++ ..+..+++|+.|+
T Consensus 22 ~~v~c~~~~-l~~ip~~~~--~~L~~L~-Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l-~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSKR-HASVPAGIP--TNAQILY-LHDNQITKLEPGVFDSLINLKELYLGSNQ--L-GALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--C-CCCCTTTTTTCTTCCEEE
T ss_pred CEeEccCCC-cCccCCCCC--CCCCEEE-cCCCccCccCHHHhhCccCCcEEECCCCC--C-CCcChhhcccCCCcCEEE
Confidence 345554222 233444332 5566666 555554 24445566666666666663 2 3333 3345666666666
Q ss_pred eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414 96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH 173 (252)
Q Consensus 96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 173 (252)
+++ +.+.. ++ .+..+ ++|++|++++|.+. ..|..+..+++|+.|++++|.+..... .. +..+++|+.|+
T Consensus 95 Ls~-N~l~~----l~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~-~~~l~~L~~L~ 165 (229)
T 3e6j_A 95 LGT-NQLTV----LPSAVFDRL-VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH-GA-FDRLSSLTHAY 165 (229)
T ss_dssp CCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT-TT-TTTCTTCCEEE
T ss_pred CCC-CcCCc----cChhHhCcc-hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH-HH-HhCCCCCCEEE
Confidence 666 44433 33 34555 67777777777666 455556667777777776666654222 12 45667777777
Q ss_pred ecCCc
Q 036414 174 LKSML 178 (252)
Q Consensus 174 l~~~~ 178 (252)
+++|+
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 77766
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=2.1e-17 Score=145.47 Aligned_cols=121 Identities=21% Similarity=0.185 Sum_probs=96.8
Q ss_pred CCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414 90 KLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169 (252)
Q Consensus 90 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 169 (252)
.|+.|++++ +.+.. +|.+..+ ++|+.|++++|.++ ..|..++.+++|+.|++++|.++.. + . ++.+++|
T Consensus 442 ~L~~L~Ls~-n~l~~----lp~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l--p-~-l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAH-KDLTV----LCHLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--D-G-VANLPRL 510 (567)
T ss_dssp TCSEEECTT-SCCSS----CCCGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--G-G-GTTCSSC
T ss_pred CceEEEecC-CCCCC----CcCcccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC--c-c-cCCCCCC
Confidence 588899988 56666 7777777 89999999999888 6777889999999999998888763 3 4 7789999
Q ss_pred cEEEecCCccccce--eccccccccccceeeccCCCCCCCh---HHHHhccccceeec
Q 036414 170 KILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLP---EELWRIKSLCKLEL 222 (252)
Q Consensus 170 ~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l 222 (252)
+.|++++|. ++++ |..++.+++|+.|++++|...+..| .....+++|+.|++
T Consensus 511 ~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999998 8877 7778889999999999988654322 23456888888863
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.9e-15 Score=120.68 Aligned_cols=169 Identities=19% Similarity=0.217 Sum_probs=136.3
Q ss_pred hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414 15 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC 93 (252)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (252)
.+.++..++++.+... .++ .+..+++|+.|+ ++.+.. ..+.+..+++|++|++++|. ...++. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~-l~~n~i~~l~~l~~l~~L~~L~L~~N~---i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFN-GDNSNIQSLAGMQFFTNLKELHLSHNQ---ISDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEE-CTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEE-CcCCCcccchHHhhCCCCCEEECCCCc---cCCChh-hccCCCCCE
Confidence 5777888888865544 344 578899999999 888877 44478889999999999995 444555 889999999
Q ss_pred EEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414 94 LKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH 173 (252)
Q Consensus 94 L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 173 (252)
|++++ +.+.. ++.+.. ++|+.|++++|.++.. ..++.+++|+.|++++|.+.+.. . ...+++|+.|+
T Consensus 90 L~L~~-N~l~~----l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~---~-l~~l~~L~~L~ 156 (263)
T 1xeu_A 90 LSVNR-NRLKN----LNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV---M-LGFLSKLEVLD 156 (263)
T ss_dssp EECCS-SCCSC----CTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG---G-GGGCTTCCEEE
T ss_pred EECCC-CccCC----cCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh---H-HccCCCCCEEE
Confidence 99999 66655 554433 8999999999999843 46889999999999999887642 3 66899999999
Q ss_pred ecCCccccceeccccccccccceeeccCCCCC
Q 036414 174 LKSMLWLEEWTMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 174 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
+++|+ ++++ ..+..+++|+.|++++|....
T Consensus 157 L~~N~-i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 157 LHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTSC-CCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCc-Ccch-HHhccCCCCCEEeCCCCcccC
Confidence 99999 8877 557889999999999988653
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=9.7e-15 Score=113.48 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=108.9
Q ss_pred cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEe
Q 036414 20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKL 96 (252)
Q Consensus 20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (252)
+.++.+++.+ ..+|..+. ++++.|+ ++.+.+ + +..+..+++|+.|++++|. .....+..+..+++|++|++
T Consensus 14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~-l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP--ETITEIR-LEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC--TTCCEEE-CCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCc-CcCCCccC--cCCCEEE-CCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEEC
Confidence 5566664443 34565443 5788888 777776 3 3357778888888888886 54555777888888999988
Q ss_pred eeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEe
Q 036414 97 ANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174 (252)
Q Consensus 97 ~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 174 (252)
++ +.+.. +| .+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+...... . +..+++|++|++
T Consensus 88 s~-N~l~~----l~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L 159 (220)
T 2v9t_B 88 YG-NKITE----LPKSLFEGL-FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-T-FSPLRAIQTMHL 159 (220)
T ss_dssp CS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-T-TTTCTTCCEEEC
T ss_pred CC-CcCCc----cCHhHccCC-CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-H-HhCCCCCCEEEe
Confidence 88 55655 56 35667 8999999999999877788888899999999988887664332 2 567889999999
Q ss_pred cCCcccc
Q 036414 175 KSMLWLE 181 (252)
Q Consensus 175 ~~~~~l~ 181 (252)
++|+ +.
T Consensus 160 ~~N~-~~ 165 (220)
T 2v9t_B 160 AQNP-FI 165 (220)
T ss_dssp CSSC-EE
T ss_pred CCCC-cC
Confidence 9888 43
No 108
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=3.3e-15 Score=132.22 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=39.0
Q ss_pred CCccccEEEecCCccccc--eeccccccccccceeeccCCCCCC-ChHHHHhccccceeecccCC
Q 036414 165 SFPQLKILHLKSMLWLEE--WTMGAGAMPKLESLILNPCAYLRK-LPEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 165 ~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~ 226 (252)
.+++|++|++++|+ +++ ++.....+++|++|++++|...+. ++.....+++|++|++++|.
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 35667777777666 543 333345677788888888774332 34445667788888887775
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.8e-14 Score=107.08 Aligned_cols=133 Identities=22% Similarity=0.160 Sum_probs=88.3
Q ss_pred CCCCccEEEeeccCCccc-cchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhc
Q 036414 61 RLPTVQTLRISGDLSHYH-SGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEK 139 (252)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~ 139 (252)
..++|++|++++|. .. ..+|..+..+++|++|++.+ +.+.. ++.+..+ ++|++|++++|.+....+..++.
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLIN-VGLIS----VSNLPKL-PKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEES-SCCCC----CSSCCCC-SSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcC-CCCCC----hhhhccC-CCCCEEECcCCcCchHHHHHHhh
Confidence 34677788887774 32 35666667777777777777 44444 3455666 77778888777777556666666
Q ss_pred CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec----cccccccccceeeccCCC
Q 036414 140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM----GAGAMPKLESLILNPCAY 203 (252)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~ 203 (252)
+++|+.|++++|.+........ ...+++|++|++++|+ +..++. .+..+++|+.|++++|..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGG-GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCCEEeccCCccCcchhHHH-HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777777777777655322123 5567777777777777 666554 456677777777777654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=3.1e-14 Score=111.26 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=107.3
Q ss_pred CcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCC
Q 036414 43 LIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPS 118 (252)
Q Consensus 43 L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~ 118 (252)
-+.++ .+.+.. +|..+ .++|+.|++++|. .....+..+..+++|++|++.+ +.+.. ++ .+..+ ++
T Consensus 21 ~~~v~-c~~~~l~~ip~~~--~~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~-N~l~~----i~~~~~~~l-~~ 89 (229)
T 3e6j_A 21 GTTVD-CRSKRHASVPAGI--PTNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGS-NQLGA----LPVGVFDSL-TQ 89 (229)
T ss_dssp TTEEE-CTTSCCSSCCSCC--CTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TT
T ss_pred CCEeE-ccCCCcCccCCCC--CCCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCC-CCCCC----cChhhcccC-CC
Confidence 34455 444444 44444 3788899998886 4454566778888888888888 55655 55 45667 88
Q ss_pred CceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-ccccccccccee
Q 036414 119 LTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLI 197 (252)
Q Consensus 119 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~ 197 (252)
|++|++++|.++...+..+..+++|+.|++++|.+.. ++.. ...+++|++|++++|. ++.++. .+..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRG-IERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTT-GGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcc-cccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEE
Confidence 8888888888886666677888888888888887764 3323 5678888888888887 777753 467788888888
Q ss_pred eccCCCCCC
Q 036414 198 LNPCAYLRK 206 (252)
Q Consensus 198 l~~~~~~~~ 206 (252)
+++|+....
T Consensus 166 l~~N~~~c~ 174 (229)
T 3e6j_A 166 LFGNPWDCE 174 (229)
T ss_dssp CTTSCBCTT
T ss_pred eeCCCccCC
Confidence 888876543
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=1.4e-14 Score=120.94 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=47.8
Q ss_pred CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhh
Q 036414 61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLE 138 (252)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 138 (252)
.+++|++|++++|. .....+..+..+++|++|++++ +.+.. ++ .+..+ ++|++|++++|.+....+..+.
T Consensus 62 ~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~-N~l~~----~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~ 133 (361)
T 2xot_A 62 RLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSS-NHLHT----LDEFLFSDL-QALEVLLLYNNHIVVVDRNAFE 133 (361)
T ss_dssp CCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS-SCCCE----ECTTTTTTC-TTCCEEECCSSCCCEECTTTTT
T ss_pred cccccCEEECCCCc--CCccChhhccCCCCCCEEECCC-CcCCc----CCHHHhCCC-cCCCEEECCCCcccEECHHHhC
Confidence 44455555554443 2222223344445555555544 33322 22 23344 4555555555544444444444
Q ss_pred cCCCCceEEeccCCccCceeee-cCCCCCccccEEEecCCccccce
Q 036414 139 KLPHLEVLKLKQNSYFERKLAC-VGCSSFPQLKILHLKSMLWLEEW 183 (252)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~ 183 (252)
.+++|+.|++++|.+....... .+...+++|+.|++++|+ ++.+
T Consensus 134 ~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 178 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKL 178 (361)
T ss_dssp TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence 4555555555444443321110 000234455555555554 4443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=4.7e-14 Score=117.64 Aligned_cols=168 Identities=23% Similarity=0.206 Sum_probs=127.8
Q ss_pred cEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhh-ccCCCCeEEeeeccchhHHHHhhc--cccCCCCC
Q 036414 44 IFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLC-ELHKLECLKLANQGKMWQITRMIL--SEYKFPPS 118 (252)
Q Consensus 44 ~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~ 118 (252)
+.++ ...+.. +|..+. ..++.|++++|. .....+..+. .+++|+.|++++ +.+.. ++ .+..+ ++
T Consensus 21 ~~l~-c~~~~l~~iP~~~~--~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~-N~i~~----i~~~~~~~l-~~ 89 (361)
T 2xot_A 21 NILS-CSKQQLPNVPQSLP--SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSH-NHLNF----ISSEAFVPV-PN 89 (361)
T ss_dssp TEEE-CCSSCCSSCCSSCC--TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCS-SCCCE----ECTTTTTTC-TT
T ss_pred CEEE-eCCCCcCccCccCC--CCCCEEECCCCC--CCccChhhhhhcccccCEEECCC-CcCCc----cChhhccCC-CC
Confidence 4555 555544 444443 468899999995 4333344455 899999999998 66655 44 57888 99
Q ss_pred CceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccc----ccccccc
Q 036414 119 LTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA----GAMPKLE 194 (252)
Q Consensus 119 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~l~~L~ 194 (252)
|++|++++|.++...+..+..+++|+.|++++|.+..... .. +.++++|+.|++++|. ++.++... ..+++|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC
Confidence 9999999999987777788999999999999998865322 23 6789999999999999 88887654 5789999
Q ss_pred ceeeccCCCCCCCh-HHHHhccc--cceeecccCC
Q 036414 195 SLILNPCAYLRKLP-EELWRIKS--LCKLELHWPQ 226 (252)
Q Consensus 195 ~L~l~~~~~~~~~p-~~l~~l~~--L~~L~l~~~~ 226 (252)
.|++++|... .+| ..+..++. ++.|++.+++
T Consensus 167 ~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 167 LLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EEECCCCCCC-ccCHHHhhhccHhhcceEEecCCC
Confidence 9999999875 555 45677776 4889998865
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=1.2e-13 Score=107.26 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhh-c-cccCCCCCCceEEeeecccCCCCchhhhcC
Q 036414 63 PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMI-L-SEYKFPPSLTQLSLSNTELIEDPMPTLEKL 140 (252)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~ 140 (252)
+++++|++++|. .....+..+..+++|++|++++ +.+.. + | .+..+ ++|++|++++|.++...+..+..+
T Consensus 32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~-N~i~~----~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSN-NQISE----LAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCS-SCCCE----ECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCC-CcCCC----cCHHHhhCC-cCCCEEECCCCcCCccCHhHccCC
Confidence 344445544443 2222222344444455555444 33322 2 2 34444 444555555444443333334444
Q ss_pred CCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCC
Q 036414 141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCA 202 (252)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 202 (252)
++|+.|++++|.+...... . +..+++|+.|++++|. ++.++. .+..+++|+.|++++|+
T Consensus 104 ~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVD-A-FQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCEeCHH-H-cCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 4455555544444332111 1 3344445555554444 444322 23344444445554444
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=5.6e-14 Score=109.13 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=111.6
Q ss_pred cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hh-hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414 20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PD-ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 95 (252)
Q Consensus 20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (252)
++++++++.+. .+|..+. ..+++|+ ++.+.+ . +. .++.+++|++|++++|. .....+..+..+++|++|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~-L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELR-LNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEE-CCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEE-cCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEE
Confidence 57888855543 4666543 3467888 888877 3 22 26788999999999985 4444445788899999999
Q ss_pred eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414 96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH 173 (252)
Q Consensus 96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 173 (252)
+++ +.+.. ++ .+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+...... . +..+++|++|+
T Consensus 88 Ls~-N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~ 159 (220)
T 2v70_A 88 LTS-NRLEN----VQHKMFKGL-ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-A-FDTLHSLSTLN 159 (220)
T ss_dssp CCS-SCCCC----CCGGGGTTC-SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-T-TTTCTTCCEEE
T ss_pred CCC-CccCc----cCHhHhcCC-cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-H-hcCCCCCCEEE
Confidence 998 55544 44 47777 9999999999999877788888999999999998888764332 3 67889999999
Q ss_pred ecCCcccc
Q 036414 174 LKSMLWLE 181 (252)
Q Consensus 174 l~~~~~l~ 181 (252)
+++|+ +.
T Consensus 160 L~~N~-l~ 166 (220)
T 2v70_A 160 LLANP-FN 166 (220)
T ss_dssp CCSCC-EE
T ss_pred ecCcC-Cc
Confidence 99998 54
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=1.9e-14 Score=104.82 Aligned_cols=124 Identities=22% Similarity=0.190 Sum_probs=66.0
Q ss_pred CCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414 89 HKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165 (252)
Q Consensus 89 ~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (252)
++|+.|++.+ +.+. . +| .+..+ ++|++|++++|.++.. ..++.+++|+.|++++|.+...... . ...
T Consensus 17 ~~l~~L~l~~-n~l~~~~----~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~-~~~ 86 (149)
T 2je0_A 17 SDVKELVLDN-SRSNEGK----LEGLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-L-AEK 86 (149)
T ss_dssp GGCSEEECTT-CBCBTTB----CCSCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-H-HHH
T ss_pred ccCeEEEccC-CcCChhH----HHHHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-H-hhh
Confidence 4455555555 2232 3 44 34444 5666666666655533 4455566666666665555442111 1 234
Q ss_pred CccccEEEecCCcccccee--ccccccccccceeeccCCCCCCCh---HHHHhccccceeecc
Q 036414 166 FPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLP---EELWRIKSLCKLELH 223 (252)
Q Consensus 166 ~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~ 223 (252)
+++|++|++++|. +++++ ..++.+++|+.|++++|...+.-+ ..+..+++|++|+++
T Consensus 87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5666666666666 55542 445666666666666665443222 245666777776664
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=8.1e-14 Score=108.25 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=112.6
Q ss_pred cEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchh-HhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCC
Q 036414 44 IFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPS 118 (252)
Q Consensus 44 ~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~ 118 (252)
++++ ++.+.. +|..+ ...+++|++++|. .....+ ..+..+++|++|++.+ +.+.. ++ .+..+ ++
T Consensus 14 ~~l~-~s~n~l~~iP~~~--~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~-N~i~~----i~~~~~~~l-~~ 82 (220)
T 2v70_A 14 TTVD-CSNQKLNKIPEHI--PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSN-NKITD----IEEGAFEGA-SG 82 (220)
T ss_dssp TEEE-CCSSCCSSCCSCC--CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCS-SCCCE----ECTTTTTTC-TT
T ss_pred CEeE-eCCCCcccCccCC--CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCC-CcCCE----ECHHHhCCC-CC
Confidence 4666 666655 55544 3467899999985 333223 3477899999999988 55644 44 57777 99
Q ss_pred CceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccccccccee
Q 036414 119 LTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLI 197 (252)
Q Consensus 119 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~ 197 (252)
|++|++++|.++...+..++.+++|++|++++|.+...... . +.++++|++|++++|. ++.+ +..++.+++|+.|+
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-S-FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-S-STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-H-cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEE
Confidence 99999999999877778888999999999998888764322 3 6688999999999998 7777 56678889999999
Q ss_pred eccCCCCCC
Q 036414 198 LNPCAYLRK 206 (252)
Q Consensus 198 l~~~~~~~~ 206 (252)
+++|+....
T Consensus 160 L~~N~l~c~ 168 (220)
T 2v70_A 160 LLANPFNCN 168 (220)
T ss_dssp CCSCCEECS
T ss_pred ecCcCCcCC
Confidence 999886543
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.9e-13 Score=101.55 Aligned_cols=131 Identities=21% Similarity=0.230 Sum_probs=86.4
Q ss_pred hhccccEEEecCCCCC-CCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414 15 MMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE 92 (252)
Q Consensus 15 ~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (252)
..++|++|++++|.+. ..+|..+..+++|++|+ ++.+.+ ....++.+++|++|++++|. ....++..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLS-LINVGLISVSNLPKLPKLKKLELSENR--IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEE-EESSCCCCCSSCCCCSSCCEEEEESCC--CCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEe-CcCCCCCChhhhccCCCCCEEECcCCc--CchHHHHHHhhCCCCC
Confidence 3467899999977765 46777778888888888 777766 23567778888888888885 3333566666677777
Q ss_pred eEEeeeccchhHHHHhh---ccccCCCCCCceEEeeecccCCCCc---hhhhcCCCCceEEeccCCcc
Q 036414 93 CLKLANQGKMWQITRMI---LSEYKFPPSLTQLSLSNTELIEDPM---PTLEKLPHLEVLKLKQNSYF 154 (252)
Q Consensus 93 ~L~l~~~~~~~~~~~l~---~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~ 154 (252)
+|++++ +.+.. + +.+..+ ++|++|++++|.++...+ ..+..+++|+.|++++|...
T Consensus 99 ~L~Ls~-N~l~~----~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSG-NKLKD----ISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBS-SSCCS----SGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccC-CccCc----chhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777 34422 2 244555 667777777766664443 35566666666666655543
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2.4e-13 Score=98.90 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=101.4
Q ss_pred hhccccEEEecCCCCC-CCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414 15 MMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE 92 (252)
Q Consensus 15 ~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (252)
..++|++|++++|.+. ..+|..+..+++|+.|+ ++.+.. ....++.+++|++|++++|. ....+|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLS-TINVGLTSIANLPKLNKLKKLELSDNR--VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEE-CTTSCCCCCTTCCCCTTCCEEECCSSC--CCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEE-CcCCCCCCchhhhcCCCCCEEECCCCc--ccchHHHHhhhCCCCC
Confidence 4578999999988876 57888889999999999 888877 33678889999999999996 4444787788899999
Q ss_pred eEEeeeccchhHHHHhh-ccccCCCCCCceEEeeecccCCCCc---hhhhcCCCCceEEec
Q 036414 93 CLKLANQGKMWQITRMI-LSEYKFPPSLTQLSLSNTELIEDPM---PTLEKLPHLEVLKLK 149 (252)
Q Consensus 93 ~L~l~~~~~~~~~~~l~-~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 149 (252)
+|++++ +.+..+. . ..+..+ ++|++|++++|.++...+ ..++.+++|+.|+++
T Consensus 92 ~L~ls~-N~i~~~~--~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSG-NKIKDLS--TIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTT-SCCCSHH--HHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCC-CcCCChH--HHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999998 4453300 1 367777 899999999998886555 467888899888874
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=1.1e-13 Score=122.41 Aligned_cols=80 Identities=8% Similarity=0.001 Sum_probs=40.3
Q ss_pred HhhccccEEEecCCCCCCC----CCcccCCCCCCcEecccCCCCCc-------hhhcCCCCCccEEEeeccCCccccchh
Q 036414 14 WMMQKLMHLNFGSITLPAP----PKNYSSSLKNLIFISALHPSSCT-------PDILSRLPTVQTLRISGDLSHYHSGVS 82 (252)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~~l~~~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (252)
..+++|++|++++|.+... ++.....+++|++|+ ++.+... +..+..+++|++|++++|. ...++
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~-L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---~~~l~ 236 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN-FYMTEFAKISPKDLETIARNCRSLVSVKVGDFE---ILELV 236 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE-CTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB---GGGGH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE-eeccCCCccCHHHHHHHHhhCCCCcEEeccCcc---HHHHH
Confidence 3555566666655543222 222234455566665 5444431 1123445666666666652 33455
Q ss_pred HhhhccCCCCeEEee
Q 036414 83 KSLCELHKLECLKLA 97 (252)
Q Consensus 83 ~~l~~l~~L~~L~l~ 97 (252)
..+..+++|+++++.
T Consensus 237 ~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 237 GFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHCTTCCEEEEC
T ss_pred HHHhhhhHHHhhccc
Confidence 555666666666665
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=5.5e-15 Score=130.09 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=131.4
Q ss_pred CCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccC-----------CccccchhHhhhccCCCCeEE-eeeccchh
Q 036414 38 SSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDL-----------SHYHSGVSKSLCELHKLECLK-LANQGKMW 103 (252)
Q Consensus 38 ~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~-----------~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~ 103 (252)
..+++|+.|+ ++.+.. +|..++.+++|++|+++++. .......|..+..+++|+.|+ +.. +.+.
T Consensus 346 ~~~~~L~~L~-Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCE-LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLD 423 (567)
T ss_dssp STTTTSSSCC-CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred ccCccceecc-CChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccc
Confidence 4566777777 777665 77778888888888775542 002344556677777777777 333 3332
Q ss_pred HHHHh------hccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCC
Q 036414 104 QITRM------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSM 177 (252)
Q Consensus 104 ~~~~l------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 177 (252)
.+..+ +..+. . ..|+.|++++|.++. .|. ++.+++|+.|++++|.+.. ++.. ++.+++|+.|++++|
T Consensus 424 ~L~~l~l~~n~i~~l~-~-~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKME-Y-ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPA-LAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHH-H-TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGG-GGGCTTCCEEECCSS
T ss_pred hhhhhhhhcccccccC-c-cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc--cchh-hhcCCCCCEEECCCC
Confidence 21100 11111 1 478999999999985 454 8999999999999998874 3334 779999999999999
Q ss_pred ccccceeccccccccccceeeccCCCCCCC-hHHHHhccccceeecccCC
Q 036414 178 LWLEEWTMGAGAMPKLESLILNPCAYLRKL-PEELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 178 ~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~ 226 (252)
. ++++| .++.+++|+.|++++|...... |..+..+++|+.|++++++
T Consensus 497 ~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 497 A-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9 88888 6889999999999999876544 8889999999999999875
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=3.8e-14 Score=125.38 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=54.9
Q ss_pred hhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--eccccccccccceeeccCCCCCCCh-HHHHh
Q 036414 137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLP-EELWR 213 (252)
Q Consensus 137 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~ 213 (252)
+..+++|+.|++++ .+.+..+... ...+++|+.|++++|. +++. ......+++|+.|++++|...+... .....
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 34556666666643 3222212111 1137788888888888 5432 2223568999999999998743222 23456
Q ss_pred ccccceeecccCC
Q 036414 214 IKSLCKLELHWPQ 226 (252)
Q Consensus 214 l~~L~~L~l~~~~ 226 (252)
+++|++|++++|+
T Consensus 505 l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 505 LETMRSLWMSSCS 517 (594)
T ss_dssp GGGSSEEEEESSC
T ss_pred CCCCCEEeeeCCC
Confidence 8999999999997
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=3e-13 Score=101.29 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=87.0
Q ss_pred ccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCC
Q 036414 87 ELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF 166 (252)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 166 (252)
.+.+|+.|++.+ +.+.. ++.+..+.++|++|++++|.++.. ..++.+++|++|++++|.+...... . +..+
T Consensus 17 ~~~~L~~L~l~~-n~l~~----i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRG-YKIPV----IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG-L-DQAL 87 (176)
T ss_dssp CTTSCEEEECTT-SCCCS----CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC-H-HHHC
T ss_pred CcCCceEEEeeC-CCCch----hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc-h-hhcC
Confidence 445566666665 33433 443444424777777777776632 4566777788888877776542211 1 2467
Q ss_pred ccccEEEecCCccccceec--cccccccccceeeccCCCCCCChHH----HHhccccceeecccCCHHHH
Q 036414 167 PQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPEE----LWRIKSLCKLELHWPQPELR 230 (252)
Q Consensus 167 ~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~~~ 230 (252)
++|++|++++|. +++++. .++.+++|+.|++++|+.. .+|.. +..+++|+.|+++++..+..
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 788888888887 776665 5677888888888888764 45543 77888888888888875433
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=5.1e-13 Score=118.13 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCceEEeeecccCCCCchhhhc-CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--eccccccccc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEK-LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMGAGAMPKL 193 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L 193 (252)
++|++|++++ .+++..+..++. +++|+.|++++|.+++...... ..++++|++|++++|+ +++. ......+++|
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDCP-FGDKALLANASKLETM 508 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH-HHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGS
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH-HhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCC
Confidence 4555555543 333233333333 6667777776666543322211 2346667777776666 4422 2233456666
Q ss_pred cceeeccCCC
Q 036414 194 ESLILNPCAY 203 (252)
Q Consensus 194 ~~L~l~~~~~ 203 (252)
+.|++++|+.
T Consensus 509 ~~L~l~~~~~ 518 (594)
T 2p1m_B 509 RSLWMSSCSV 518 (594)
T ss_dssp SEEEEESSCC
T ss_pred CEEeeeCCCC
Confidence 7777766665
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=2.8e-13 Score=101.40 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=97.6
Q ss_pred cCCCCCccEEEeeccCCccccchhHhhhccC-CCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhh
Q 036414 59 LSRLPTVQTLRISGDLSHYHSGVSKSLCELH-KLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTL 137 (252)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l 137 (252)
+..+++|++|++++|. ...++. +..+. +|++|++++ +.+.. ++.+..+ ++|++|++++|.++...+..+
T Consensus 15 ~~~~~~L~~L~l~~n~---l~~i~~-~~~~~~~L~~L~Ls~-N~l~~----~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK---IPVIEN-LGATLDQFDAIDFSD-NEIRK----LDGFPLL-RRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EECTTSCEEEECTTSC---CCSCCC-GGGGTTCCSEEECCS-SCCCE----ECCCCCC-SSCCEEECCSSCCCEECSCHH
T ss_pred cCCcCCceEEEeeCCC---CchhHH-hhhcCCCCCEEECCC-CCCCc----ccccccC-CCCCEEECCCCcccccCcchh
Confidence 3457778888888874 233433 44444 888888888 55544 5566777 899999999998885555566
Q ss_pred hcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecc----ccccccccceeeccCCC
Q 036414 138 EKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG----AGAMPKLESLILNPCAY 203 (252)
Q Consensus 138 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~~~~ 203 (252)
+.+++|+.|++++|.+........ ...+++|+.|++++|+ +..++.. ++.+++|+.|++++|..
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCCcchhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 889999999998888755322113 5678999999999998 7777653 67889999999988864
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=6.9e-15 Score=112.40 Aligned_cols=135 Identities=21% Similarity=0.183 Sum_probs=82.4
Q ss_pred cchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414 79 SGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL 158 (252)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 158 (252)
..++..+..+++|++|++++ +.+.. +|.+..+ ++|++|++++|.++ ..+..+..+++|+.|++++|.+....
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~-n~l~~----l~~~~~l-~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~- 109 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALST-NNIEK----ISSLSGM-ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS- 109 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSE-EEESC----CCCHHHH-TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-
T ss_pred hhhhHHHhcCCCCCEEECCC-CCCcc----ccccccC-CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-
Confidence 33444666677777777766 44544 4555555 67777777777666 34555555667777777766665421
Q ss_pred eecCCCCCccccEEEecCCccccceec--cccccccccceeeccCCCCCCChH----------HHHhccccceeecccC
Q 036414 159 ACVGCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPE----------ELWRIKSLCKLELHWP 225 (252)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~----------~l~~l~~L~~L~l~~~ 225 (252)
. ...+++|++|++++|. ++.++. .+..+++|+.|++++|+..+..|. .+..+++|++|+-..+
T Consensus 110 --~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i 184 (198)
T 1ds9_A 110 --G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV 184 (198)
T ss_dssp --H-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGG
T ss_pred --c-cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCccc
Confidence 2 4456777777777776 665432 456677777777777765332221 2567778887774443
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=2.5e-13 Score=122.96 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=69.6
Q ss_pred CCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc
Q 036414 33 PKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL 110 (252)
Q Consensus 33 ~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~ 110 (252)
.+..+..+..|+.|+ ++.+.+ ++..+..+++|++|+|++|. ...+|..+..+++|++|++++ +.+.. +|
T Consensus 216 ~~~~~~~l~~L~~L~-Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~-N~l~~----lp 286 (727)
T 4b8c_D 216 PKDSKYDDQLWHALD-LSNLQIFNISANIFKYDFLTRLYLNGNS---LTELPAEIKNLSNLRVLDLSH-NRLTS----LP 286 (727)
T ss_dssp ------CCCCCCEEE-CTTSCCSCCCGGGGGCCSCSCCBCTTSC---CSCCCGGGGGGTTCCEEECTT-SCCSS----CC
T ss_pred ChhhhccCCCCcEEE-CCCCCCCCCChhhcCCCCCCEEEeeCCc---CcccChhhhCCCCCCEEeCcC-CcCCc----cC
Confidence 455566667777777 666665 55556667777777777763 336666667777777777776 44545 56
Q ss_pred -cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccC
Q 036414 111 -SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE 155 (252)
Q Consensus 111 -~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 155 (252)
.+..+ ++|++|++++|.++ ..|..++.+++|+.|++++|.+.+
T Consensus 287 ~~~~~l-~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 287 AELGSC-FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSGGGG-TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred hhhcCC-CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 66666 77777777777665 445556677777777777666553
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=5e-12 Score=95.96 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=43.6
Q ss_pred ccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccc
Q 036414 112 EYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAM 190 (252)
Q Consensus 112 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l 190 (252)
+..+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . +.++++|++|++++|+ ++.+ +..++.+
T Consensus 50 ~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 125 (192)
T 1w8a_A 50 FGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK-M-FLGLHQLKTLNLYDNQ-ISCVMPGSFEHL 125 (192)
T ss_dssp GGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-S-STTCTTCCEEECCSSC-CCEECTTSSTTC
T ss_pred cccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-H-hcCCCCCCEEECCCCc-CCeeCHHHhhcC
Confidence 3444 5555555555555544445555555555555555554432211 1 3345555555555555 4433 3334455
Q ss_pred ccccceeeccCCCC
Q 036414 191 PKLESLILNPCAYL 204 (252)
Q Consensus 191 ~~L~~L~l~~~~~~ 204 (252)
++|+.|++++|+..
T Consensus 126 ~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 126 NSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEeCCCCcc
Confidence 55555555555443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=94.26 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=73.3
Q ss_pred cEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCC
Q 036414 44 IFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSL 119 (252)
Q Consensus 44 ~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L 119 (252)
+.++ .+.+.. +|..+ .++|++|++++|. ...+|..+..+++|+.|++++ +.+.. ++ .+..+ ++|
T Consensus 13 ~~l~-~~~~~l~~ip~~~--~~~l~~L~L~~n~---i~~ip~~~~~l~~L~~L~Ls~-N~i~~----i~~~~f~~l-~~L 80 (193)
T 2wfh_A 13 TVVR-CSNKGLKVLPKGI--PRDVTELYLDGNQ---FTLVPKELSNYKHLTLIDLSN-NRIST----LSNQSFSNM-TQL 80 (193)
T ss_dssp TEEE-CTTSCCSSCCSCC--CTTCCEEECCSSC---CCSCCGGGGGCTTCCEEECCS-SCCCC----CCTTTTTTC-TTC
T ss_pred CEEE-cCCCCCCcCCCCC--CCCCCEEECCCCc---CchhHHHhhcccCCCEEECCC-CcCCE----eCHhHccCC-CCC
Confidence 3444 444443 44333 2567777777773 345566667777777777776 44433 33 45566 777
Q ss_pred ceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414 120 TQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML 178 (252)
Q Consensus 120 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 178 (252)
++|++++|.++...+..+..+++|+.|++++|.+...... . +..+++|+.|++++|+
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG-A-FNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT-T-TTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh-h-hhcCccccEEEeCCCC
Confidence 7777777777666666666777777777776666542221 2 4456677777777666
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.3e-11 Score=93.66 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=62.4
Q ss_pred cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh--cCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414 20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI--LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 95 (252)
Q Consensus 20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (252)
++++++++.+ ..+|..+.. ++++|+ ++.+.+ .+.. ++.+++|++|++++|. .....+..+..+++|++|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~-l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEE-CCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEE-CCCCcCCccCCccccccCCCCCEEECCCCC--CCCcCHhHcCCcccCCEEE
Confidence 5677775544 345554332 566666 665554 2221 5556666666666664 3333344555555555555
Q ss_pred eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414 96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153 (252)
Q Consensus 96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 153 (252)
+++ +.+.. ++ .+..+ ++|++|++++|+++...+..++.+++|+.|++++|.+
T Consensus 85 Ls~-N~l~~----~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 85 LGE-NKIKE----ISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCS-CCCCE----ECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCC-CcCCc----cCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555 33322 22 24444 5555555555555544444444555555555544443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=3e-12 Score=115.94 Aligned_cols=179 Identities=15% Similarity=0.018 Sum_probs=100.1
Q ss_pred ccccEEEecCCCCCCCCCcccCCCCCCcEecc----cCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414 17 QKLMHLNFGSITLPAPPKNYSSSLKNLIFISA----LHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK 90 (252)
Q Consensus 17 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~----l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (252)
++++.|++..+.... .+..+.....|..+.. +..+.. .+..+..+++|+.|+|++|. ...++..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ---IFNISANIFKYDF 248 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC---CSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC---CCCCChhhcCCCC
Confidence 456777776555433 3433333344444430 112222 34557778889999998884 4467777778888
Q ss_pred CCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414 91 LECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169 (252)
Q Consensus 91 L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 169 (252)
|++|++++ +.+.. +| .+..+ ++|++|+|++|.++ ..|..++.+++|+.|++++|.+.. ++.. ++.+++|
T Consensus 249 L~~L~Ls~-N~l~~----lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--lp~~-~~~l~~L 318 (727)
T 4b8c_D 249 LTRLYLNG-NSLTE----LPAEIKNL-SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--LPWE-FGNLCNL 318 (727)
T ss_dssp CSCCBCTT-SCCSC----CCGGGGGG-TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC--CCSS-TTSCTTC
T ss_pred CCEEEeeC-CcCcc----cChhhhCC-CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc--cChh-hhcCCCc
Confidence 99999888 55556 77 77787 88999999988888 567778888889999998887753 3434 6788889
Q ss_pred cEEEecCCccccce-eccccccc-cccceeeccCCCCCCChHH
Q 036414 170 KILHLKSMLWLEEW-TMGAGAMP-KLESLILNPCAYLRKLPEE 210 (252)
Q Consensus 170 ~~L~l~~~~~l~~~-~~~~~~l~-~L~~L~l~~~~~~~~~p~~ 210 (252)
+.|+|++|+ ++.. +..+..+. ....+++.+|.....+|..
T Consensus 319 ~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 319 QFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred cEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 999998888 6643 43333322 1234677777766666653
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=5e-14 Score=107.59 Aligned_cols=127 Identities=23% Similarity=0.202 Sum_probs=87.8
Q ss_pred hhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCch
Q 036414 57 DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMP 135 (252)
Q Consensus 57 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~ 135 (252)
..++.+++|++|++++|. ...++ .+..+++|++|++++ +.+.. +| .+..+ ++|++|++++|.++. . .
T Consensus 42 ~~~~~l~~L~~L~ls~n~---l~~l~-~~~~l~~L~~L~l~~-n~l~~----l~~~~~~~-~~L~~L~L~~N~l~~-l-~ 109 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNN---IEKIS-SLSGMENLRILSLGR-NLIKK----IENLDAVA-DTLEELWISYNQIAS-L-S 109 (198)
T ss_dssp HHHHHTTTCSEEECSEEE---ESCCC-CHHHHTTCCEEEEEE-EEECS----CSSHHHHH-HHCSEEEEEEEECCC-H-H
T ss_pred HHHhcCCCCCEEECCCCC---Ccccc-ccccCCCCCEEECCC-CCccc----ccchhhcC-CcCCEEECcCCcCCc-C-C
Confidence 356667788888887774 33355 677788888888887 55555 56 44445 788888888888874 3 3
Q ss_pred hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-----------ccccccccccee
Q 036414 136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-----------GAGAMPKLESLI 197 (252)
Q Consensus 136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~~~l~~L~~L~ 197 (252)
.++.+++|+.|++++|.+........ ...+++|++|++++|+ +..... .+..+++|+.|+
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCcCCchhHHHH-HhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 57778888888888887765322113 5578888888888887 654322 156788888876
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=2.6e-11 Score=90.66 Aligned_cols=109 Identities=25% Similarity=0.275 Sum_probs=62.1
Q ss_pred CCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCC
Q 036414 89 HKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF 166 (252)
Q Consensus 89 ~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 166 (252)
++|+.|++.+ +.+.. ++ .+..+ ++|++|++++|.++...+..++.+++|+.|++++|.+...... . +..+
T Consensus 28 ~~l~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~-~~~l 99 (177)
T 2o6r_A 28 SSATRLELES-NKLQS----LPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG-V-FDKL 99 (177)
T ss_dssp TTCSEEECCS-SCCCC----CCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTC
T ss_pred CCCcEEEeCC-CcccE----eCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH-H-hhCC
Confidence 4556666655 33333 33 34455 6666666666666654555556666666666666665532211 1 3456
Q ss_pred ccccEEEecCCccccceecc-ccccccccceeeccCCCCCC
Q 036414 167 PQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRK 206 (252)
Q Consensus 167 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~ 206 (252)
++|++|++++|. ++.++.. +..+++|+.|++++|+....
T Consensus 100 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 100 TQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 667777776666 6655443 35566677777766665443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=5.2e-11 Score=90.38 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=91.4
Q ss_pred cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEee
Q 036414 20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLA 97 (252)
Q Consensus 20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (252)
++++++++.+. .+|..+. +++++|+ ++.+.+ ++..+..+++|+.|++++|. .....+..+..+++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~-L~~n~i~~ip~~~~~l~~L~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELY-LDGNQFTLVPKELSNYKHLTLIDLSNNR--ISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEE-CCSSCCCSCCGGGGGCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEE-CCCCcCchhHHHhhcccCCCEEECCCCc--CCEeCHhHccCCCCCCEEECC
Confidence 56777755443 5665443 5788888 877776 66678888888888888885 444445567888889999998
Q ss_pred eccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414 98 NQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153 (252)
Q Consensus 98 ~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 153 (252)
+ +.+.. ++ .+..+ ++|++|++++|.++...+..+..+++|+.|++++|..
T Consensus 87 ~-N~l~~----i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 87 Y-NRLRC----IPPRTFDGL-KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp S-SCCCB----CCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred C-CccCE----eCHHHhCCC-CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 8 55544 44 57777 8999999999988866666788899999999988764
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=6.8e-11 Score=88.35 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=83.0
Q ss_pred ccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--ch-hhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414 19 LMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 95 (252)
Q Consensus 19 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (252)
.+.++++++.+. .+|..+ .++|++|+ ++.+.. .+ ..++.+++|++|++++|. .....+..+..+++|++|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLE-LESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEE-eCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEE
Confidence 456666644433 344433 25777777 776665 33 335677888888888774 3332233457788888888
Q ss_pred eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccC
Q 036414 96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE 155 (252)
Q Consensus 96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 155 (252)
+++ +.+.. ++ .+..+ ++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 83 l~~-N~l~~----~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 83 LHE-NKLQS----LPNGVFDKL-TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-CCccc----cCHHHhhCC-cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 887 55544 44 35666 888888888888886666666778888888888877543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=5.1e-10 Score=91.96 Aligned_cols=195 Identities=13% Similarity=0.058 Sum_probs=119.9
Q ss_pred hccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccC-----C------------
Q 036414 16 MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDL-----S------------ 75 (252)
Q Consensus 16 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~-----~------------ 75 (252)
|++|+.+++.. ......+..|.++++|+.+. +..+.. ....+..+.++..+...... .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~-l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ-IRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE-BCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEE-cCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 78888888874 44433445577788888888 766654 23334445555555443310 0
Q ss_pred -------ccccchhHhh----hccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCc
Q 036414 76 -------HYHSGVSKSL----CELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE 144 (252)
Q Consensus 76 -------~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 144 (252)
.....++..+ ....+++.+.+.+.-.... +..+...+++|+.+++..|.++.....+|..|.+|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~----~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD----FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHH----HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHH----HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 0001111111 1234555555555211111 112222138999999999888877778899999999
Q ss_pred eEEeccCCccCceeeecCCCCCcccc-EEEecCCcccccee-ccccccccccceeeccCCCCCCChH-HHHhccccceee
Q 036414 145 VLKLKQNSYFERKLACVGCSSFPQLK-ILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLE 221 (252)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~ 221 (252)
++.+..+ +.. ..... +.++++|+ .+.+.+ . ++.++ ..+..|++|+.+++.++... .++. .+..+++|+.+.
T Consensus 254 ~l~l~~n-i~~-I~~~a-F~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN-LKT-IGQRV-FSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTT-CCE-ECTTT-TTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EEECCcc-cce-ehHHH-hhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 9999776 332 22233 67899999 999987 4 77774 55788999999999887653 4443 567788888875
Q ss_pred c
Q 036414 222 L 222 (252)
Q Consensus 222 l 222 (252)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 3
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=1.8e-09 Score=80.07 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLES 195 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 195 (252)
+++++|++++|.++...+..++.+++|+.|++++|.+...... . +.++++|++|++++|+ ++.++. .++.+++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~-f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-V-FDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-h-ccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence 6667777777776665566666677777777766666542221 2 3566677777777776 666644 3566677777
Q ss_pred eeeccCCCC
Q 036414 196 LILNPCAYL 204 (252)
Q Consensus 196 L~l~~~~~~ 204 (252)
|++++|+..
T Consensus 107 L~L~~N~~~ 115 (170)
T 3g39_A 107 IWLLNNPWD 115 (170)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCCC
Confidence 777776643
No 137
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=1.2e-09 Score=90.71 Aligned_cols=136 Identities=21% Similarity=0.281 Sum_probs=61.9
Q ss_pred hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhh--cCCCCceEEeccC--CccCc
Q 036414 81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLE--KLPHLEVLKLKQN--SYFER 156 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~ 156 (252)
+...+..+++|+.|++.++..+ . ++.+ .. ++|+.|++..|.+.......+. .+|+|+.|+++.+ .....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~----l~~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-S----IGKK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-B----CCSC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-e----eccc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 3344455566666666553111 1 2222 23 5666666665555433333333 4566666665321 11000
Q ss_pred ------eeeecCCCCCccccEEEecCCccccc-e---eccccccccccceeeccCCCCCC----ChHHHHhccccceeec
Q 036414 157 ------KLACVGCSSFPQLKILHLKSMLWLEE-W---TMGAGAMPKLESLILNPCAYLRK----LPEELWRIKSLCKLEL 222 (252)
Q Consensus 157 ------~~~~~~~~~~~~L~~L~l~~~~~l~~-~---~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l 222 (252)
...+. ...+|+|+.|++.+|. +.. . ......+++|++|+++.|...+. ++.++.++++|++|++
T Consensus 237 ~~~~~l~~~l~-~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 237 GDMNVFRPLFS-KDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCGGGTGGGSC-TTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred hhHHHHHHHHh-cCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 00111 2345666666666555 321 1 11113456666666665544321 2233445566666666
Q ss_pred ccC
Q 036414 223 HWP 225 (252)
Q Consensus 223 ~~~ 225 (252)
+.|
T Consensus 315 ~~n 317 (362)
T 2ra8_A 315 KYN 317 (362)
T ss_dssp CSB
T ss_pred CCC
Confidence 554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=2.3e-09 Score=79.86 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecc-ccccccccc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLES 195 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~ 195 (252)
++|++|++++|.+....+..++.+++|+.|++++|.+...... . +..+++|++|++++|. ++.++.. ++.+++|+.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~-~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-V-FDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh-H-hCCcchhhEEECCCCc-cceeCHHHhccccCCCE
Confidence 6677777777777666666677777777777777766542221 2 3566777777777776 6666543 566777777
Q ss_pred eeeccCCCC
Q 036414 196 LILNPCAYL 204 (252)
Q Consensus 196 L~l~~~~~~ 204 (252)
|++++|+..
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 777777643
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=1e-10 Score=97.76 Aligned_cols=157 Identities=18% Similarity=0.093 Sum_probs=93.7
Q ss_pred CCCcEecccCCCCCch-------hhcC-CCCCccEEEeeccCCccccchhHhh-hccCCCCeEEeeeccchhHH--HHhh
Q 036414 41 KNLIFISALHPSSCTP-------DILS-RLPTVQTLRISGDLSHYHSGVSKSL-CELHKLECLKLANQGKMWQI--TRMI 109 (252)
Q Consensus 41 ~~L~~L~~l~~~~~~~-------~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~--~~l~ 109 (252)
++|+.|+ ++.+.+.. ..+. ..++|++|++++|. ........+ ..+++|++|++++ +.++.. .. +
T Consensus 72 ~~L~~L~-Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~-L 146 (372)
T 3un9_A 72 SSLRQLN-LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKD-L 146 (372)
T ss_dssp TTCCEEE-CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHH-H
T ss_pred hhCCEEE-ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHH-H
Confidence 5677888 77777622 1122 23688888888885 333323222 3456788888887 444110 00 1
Q ss_pred c-cc-cCCCCCCceEEeeecccCCCCc----hhhhcCCCCceEEeccCCccCce---eeecCCCCCccccEEEecCCccc
Q 036414 110 L-SE-YKFPPSLTQLSLSNTELIEDPM----PTLEKLPHLEVLKLKQNSYFERK---LACVGCSSFPQLKILHLKSMLWL 180 (252)
Q Consensus 110 ~-~~-~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l 180 (252)
. .+ ... ++|+.|++++|.++.... ..+...++|++|++++|.+.+.. +... ....++|++|++++|. +
T Consensus 147 ~~~L~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~-i 223 (372)
T 3un9_A 147 RDLLLHDQ-CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNG-A 223 (372)
T ss_dssp HHHHHSTT-CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSC-C
T ss_pred HHHHHhcC-CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCC-C
Confidence 1 22 233 788888888887764332 33356788888888888765421 1112 3456678888888887 6
Q ss_pred cce-----eccccccccccceeeccCCCCC
Q 036414 181 EEW-----TMGAGAMPKLESLILNPCAYLR 205 (252)
Q Consensus 181 ~~~-----~~~~~~l~~L~~L~l~~~~~~~ 205 (252)
++. .......++|++|++++|....
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 532 2223456788888888887653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=3.3e-09 Score=78.99 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=66.3
Q ss_pred cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH-hhhccCCCCeEE
Q 036414 20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK-SLCELHKLECLK 95 (252)
Q Consensus 20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~ 95 (252)
+.++++++.+ ..+|..+. ++|++|+ ++.+.+ .+..++.+++|++|++++|. ...++. .+..+++|++|+
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLW-LNNNQITKLEPGVFDHLVNLQQLYFNSNK---LTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEE-eCCCCccccCHHHhcCCcCCCEEECCCCC---CCccChhHhCCcchhhEEE
Confidence 5677774444 45665543 6777887 777766 34557778888888888874 334444 346778888888
Q ss_pred eeeccchhHHHHhhc--cccCCCCCCceEEeeecccC
Q 036414 96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELI 130 (252)
Q Consensus 96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~ 130 (252)
+++ +.+.. +| .+..+ ++|++|++++|.+.
T Consensus 88 L~~-N~l~~----l~~~~~~~l-~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LND-NHLKS----IPRGAFDNL-KSLTHIYLYNNPWD 118 (174)
T ss_dssp CCS-SCCCC----CCTTTTTTC-TTCSEEECCSSCBC
T ss_pred CCC-Cccce----eCHHHhccc-cCCCEEEeCCCCcc
Confidence 877 55555 55 36667 88888888888776
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=3.9e-09 Score=78.26 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=69.0
Q ss_pred ccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414 19 LMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK 95 (252)
Q Consensus 19 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (252)
.++++++++.+. .+|..+. ++|++|+ ++.+.+ .+..++.+++|++|++++|. .....+..+..+++|++|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~-L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLY-LYDNQITKLEPGVFDRLTQLTRLDLDNNQ--LTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEE-cCCCcCCccChhhhcCcccCCEEECCCCC--cCccChhhccCCCCCCEEE
Confidence 467788755543 4665443 6788888 777766 35557778888888888885 3333333457788888888
Q ss_pred eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCC
Q 036414 96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIE 131 (252)
Q Consensus 96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~ 131 (252)
+++ +.+.. ++ .+..+ ++|++|++++|.+..
T Consensus 85 L~~-N~l~~----~~~~~~~~l-~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LND-NQLKS----IPRGAFDNL-KSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCBCT
T ss_pred CCC-CccCE----eCHHHhcCC-CCCCEEEeCCCCCCC
Confidence 887 55555 45 46677 888888888887763
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=9.6e-11 Score=97.92 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=108.6
Q ss_pred hccccEEEecCCCCCCCCCcc----cC-CCCCCcEecccCCCCCchhh----cCCCCCccEEEeeccCCccccchhHh--
Q 036414 16 MQKLMHLNFGSITLPAPPKNY----SS-SLKNLIFISALHPSSCTPDI----LSRLPTVQTLRISGDLSHYHSGVSKS-- 84 (252)
Q Consensus 16 l~~L~~L~l~~~~~~~~~~~~----l~-~l~~L~~L~~l~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~-- 84 (252)
+++|++|++++|.+....... +. ...+|++|+ ++.|.+.... ...+.+|++|++++|. ........
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~-Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVN-LASCQLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEE-CTTCCCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEE-ecCCCCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHHH
Confidence 467999999988765432222 22 236899999 9988873322 2235689999999996 43333333
Q ss_pred --h-hccCCCCeEEeeeccchhH--HHHhhc-cccCCCCCCceEEeeecccCCCC----chhhhcCCCCceEEeccCCcc
Q 036414 85 --L-CELHKLECLKLANQGKMWQ--ITRMIL-SEYKFPPSLTQLSLSNTELIEDP----MPTLEKLPHLEVLKLKQNSYF 154 (252)
Q Consensus 85 --l-~~l~~L~~L~l~~~~~~~~--~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~ 154 (252)
+ ...++|++|++++| .+.. ... ++ .+... ++|++|++++|.+++.. ...+...++|++|++++|.+.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~-l~~~L~~~-~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAV-LMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHH-HHHHHHTC-SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHH-HHHHHhcC-CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 3 24688999999994 4421 000 33 44566 89999999999887543 345567789999999999886
Q ss_pred Ccee---eecCCCCCccccEEEecCCccccc
Q 036414 155 ERKL---ACVGCSSFPQLKILHLKSMLWLEE 182 (252)
Q Consensus 155 ~~~~---~~~~~~~~~~L~~L~l~~~~~l~~ 182 (252)
+... ... ....++|++|++++|+ +++
T Consensus 225 ~~g~~~l~~~-L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 225 DTAALALARA-AREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp HHHHHHHHHH-HHHCSSCCEEECTTSS-CCH
T ss_pred HHHHHHHHHH-HHhCCCCCEEeccCCC-CCH
Confidence 5321 111 3356889999999998 764
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.9e-09 Score=89.56 Aligned_cols=154 Identities=18% Similarity=0.278 Sum_probs=90.6
Q ss_pred hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch-hHHHHhhccc--cCCCCCCceEEeeec--ccCCC
Q 036414 58 ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM-WQITRMILSE--YKFPPSLTQLSLSNT--ELIED 132 (252)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~--~~~~~~L~~l~l~~~--~~~~~ 132 (252)
-+..+++|++|+++++. ...++. + .+++|+.|.+.. +.+ .+. +..+ ..+ ++|++|++..+ .....
T Consensus 167 ll~~~P~L~~L~L~g~~---~l~l~~-~-~~~~L~~L~L~~-~~l~~~~---l~~l~~~~l-p~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTN---NLSIGK-K-PRPNLKSLEIIS-GGLPDSV---VEDILGSDL-PNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHTCTTCCEEEEECCB---TCBCCS-C-BCTTCSEEEEEC-SBCCHHH---HHHHHHSBC-TTCCEEEEECBCGGGTCC
T ss_pred HHhcCCCCcEEEEeCCC---Cceecc-c-cCCCCcEEEEec-CCCChHH---HHHHHHccC-CCCcEEEEeccccccccc
Confidence 34567788888887763 122332 2 377888888876 333 110 2222 356 88888887532 11111
Q ss_pred -Cc----hhh--hcCCCCceEEeccCCccCc--eeeecCCCCCccccEEEecCCccccc-----eeccccccccccceee
Q 036414 133 -PM----PTL--EKLPHLEVLKLKQNSYFER--KLACVGCSSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLIL 198 (252)
Q Consensus 133 -~~----~~l--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l 198 (252)
.. ..+ ..+|+|+.|++.+|.+... ..... .+.+|+|++|+++.|. +.+ +...+..+++|+.|++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEEC
Confidence 11 112 3478999999987776532 11223 4568899999998887 664 3333457889999999
Q ss_pred ccCCCCCCChHHHHhccc-c-ceeecccCC
Q 036414 199 NPCAYLRKLPEELWRIKS-L-CKLELHWPQ 226 (252)
Q Consensus 199 ~~~~~~~~~p~~l~~l~~-L-~~L~l~~~~ 226 (252)
++|...+ .+...+.. + .++++++..
T Consensus 315 ~~n~i~d---~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSD---EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCH---HHHHHHHHHCCSEEECCSBC
T ss_pred CCCcCCH---HHHHHHHHHcCCEEEecCCc
Confidence 9887553 33333332 2 456666543
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=5.9e-08 Score=81.82 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=38.4
Q ss_pred CCCceEEeeecccC-----CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-cccccc
Q 036414 117 PSLTQLSLSNTELI-----EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAM 190 (252)
Q Consensus 117 ~~L~~l~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l 190 (252)
++|+.+.+.++... .....+|..|++|+.+.+. +.+.. .-... +.++++|+.+.+..+ ++.+. ..+..+
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~a-F~~c~~L~~l~lp~~--l~~I~~~aF~~~ 345 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGL-LGGNRKVTQLTIPAN--VTQINFSAFNNT 345 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTT-TTTCCSCCEEEECTT--CCEECTTSSSSS
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-Ehhhh-hcCCCCccEEEECcc--ccEEcHHhCCCC
Confidence 55555555554332 1233445555555555554 22211 11112 445566666666332 34442 234455
Q ss_pred ccccceeeccCCC
Q 036414 191 PKLESLILNPCAY 203 (252)
Q Consensus 191 ~~L~~L~l~~~~~ 203 (252)
+|+.+.+.++..
T Consensus 346 -~L~~l~l~~n~~ 357 (401)
T 4fdw_A 346 -GIKEVKVEGTTP 357 (401)
T ss_dssp -CCCEEEECCSSC
T ss_pred -CCCEEEEcCCCC
Confidence 677777766543
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=6.1e-08 Score=81.72 Aligned_cols=200 Identities=10% Similarity=0.110 Sum_probs=138.2
Q ss_pred ccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchh
Q 036414 6 IDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVS 82 (252)
Q Consensus 6 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (252)
++.++. ++..+ +|+.+.+. +.........+.++.+|+.+. +..+.. ++.....+.+|+.+.+..+ ....-.
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp-~~l~~I~~~aF~~c~~L~~l~-l~~n~l~~I~~~aF~~~~L~~l~lp~~---l~~I~~ 219 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFP-STLEQLKEDIFYYCYNLKKAD-LSKTKITKLPASTFVYAGIEEVLLPVT---LKEIGS 219 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECC-TTCCEECSSTTTTCTTCCEEE-CTTSCCSEECTTTTTTCCCSEEECCTT---CCEECT
T ss_pred ccEECHHhcCCC-CceEEEeC-CCccEehHHHhhCcccCCeee-cCCCcceEechhhEeecccCEEEeCCc---hheehh
Confidence 777766 35554 79999998 555444556788999999999 877665 5555445789999999755 333344
Q ss_pred HhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccC----ce
Q 036414 83 KSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE----RK 157 (252)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~ 157 (252)
.++..+++|+.+.+..+ +.. ++ ....- .+|+.+.+.. .+......+|..|++|+.+.+.++.... ..
T Consensus 220 ~aF~~~~~L~~l~l~~~--l~~----I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN--VST----IGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp TTTTTCTTCCCEECCTT--CCE----ECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred hHhhCCCCCCEEecCCC--ccC----cccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 67788999999999763 222 33 22222 7899999954 4554567788999999999997765431 11
Q ss_pred eeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCCh-HHHHhccccceeecccC
Q 036414 158 LACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLP-EELWRIKSLCKLELHWP 225 (252)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~ 225 (252)
.... +.++++|+.+.+.+ . ++.+. ..+..|++|+.+.+..+ ...+. ..+..+ +|+.+.+.+.
T Consensus 292 ~~~a-F~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 292 HPYC-LEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTT-TTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CHHH-hhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 2223 67899999999983 3 67663 44677899999999654 22333 235567 8888888653
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=1.4e-08 Score=83.22 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=60.6
Q ss_pred cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-cccccccccc-ceeeccCCCCCCCh-HHHHhcc
Q 036414 139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLE-SLILNPCAYLRKLP-EELWRIK 215 (252)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~-~L~l~~~~~~~~~p-~~l~~l~ 215 (252)
.+++|+.++++.|.+... .... +.++++|+.+++.++ ++.++ ..+..|++|+ .+.+.+ .. ..++ ..+..|+
T Consensus 224 ~~~~L~~l~L~~n~i~~I-~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~ 297 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTI-PDFT-FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCD 297 (329)
T ss_dssp HCTTCCEEECTTBCCCEE-CTTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCT
T ss_pred hcCCCeEEECCCCCccee-cHhh-hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCc
Confidence 489999999988776542 2223 678999999999886 67774 4467889999 999987 33 3443 4567899
Q ss_pred ccceeecccC
Q 036414 216 SLCKLELHWP 225 (252)
Q Consensus 216 ~L~~L~l~~~ 225 (252)
+|+.+++.+.
T Consensus 298 ~L~~l~l~~n 307 (329)
T 3sb4_A 298 NLRYVLATGD 307 (329)
T ss_dssp TEEEEEECSS
T ss_pred cCCEEEeCCC
Confidence 9999998543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=3.7e-08 Score=81.26 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=62.1
Q ss_pred CccccchHHHhhccccEEEecC-CCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccc
Q 036414 5 YIDHSSEDIWMMQKLMHLNFGS-ITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSG 80 (252)
Q Consensus 5 ~l~~lp~~i~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (252)
+++.+|. +..+.+|++|++++ |.+....+..+.++++|+.|+ ++.|.+ .+..++.+++|+.|+|++|. ...
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~~~~~~~l~~L~~L~l~~N~---l~~ 94 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT-IVKSGLRFVAPDAFHFTPRLSRLNLSFNA---LES 94 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEE-CCSSCCCEECTTGGGSCSCCCEEECCSSC---CSC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEE-CCCCccceeCHHHhcCCcCCCEEeCCCCc---cce
Confidence 6777887 88888888888874 665555556678888888888 777776 34456778888888888884 344
Q ss_pred hhHhhhccCCCCeEEeee
Q 036414 81 VSKSLCELHKLECLKLAN 98 (252)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~ 98 (252)
+|..+....+|+.|++.+
T Consensus 95 ~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CCSTTTCSCCCCEEECCS
T ss_pred eCHHHcccCCceEEEeeC
Confidence 554433333388888877
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1e-07 Score=78.64 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=77.2
Q ss_pred EEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCc
Q 036414 67 TLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE 144 (252)
Q Consensus 67 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 144 (252)
.++.+++. ....+|. +..+++|+.|++++++.+.. ++ .+..+ ++|+.|+|++|++....+..++.+++|+
T Consensus 12 ~v~~~~~n--~l~~ip~-l~~~~~L~~L~l~~~n~l~~----~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDG--ALDSLHH-LPGAENLTELYIENQQHLQH----LELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSC--CCTTTTT-SCSCSCCSEEECCSCSSCCE----ECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCC--CCCccCC-CCCCCCeeEEEccCCCCCCC----cChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 34555542 3556888 88899999999985456655 44 57788 9999999999999877788889999999
Q ss_pred eEEeccCCccCceeeecCCCCCccccEEEecCCcccc
Q 036414 145 VLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE 181 (252)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 181 (252)
.|+|++|.+...... . +..++ |+.|++.+|+ +.
T Consensus 84 ~L~l~~N~l~~~~~~-~-~~~~~-L~~l~l~~N~-~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWK-T-VQGLS-LQELVLSGNP-LH 116 (347)
T ss_dssp EEECCSSCCSCCCST-T-TCSCC-CCEEECCSSC-CC
T ss_pred EEeCCCCccceeCHH-H-cccCC-ceEEEeeCCC-cc
Confidence 999999888753322 1 33344 9999999888 55
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=5.2e-08 Score=72.07 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCC-ccCceeeecCCCC----CccccEEEecCCccccc--eeccccc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS-YFERKLACVGCSS----FPQLKILHLKSMLWLEE--WTMGAGA 189 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~--~~~~~~~ 189 (252)
..|+.||+++|.++......+..+++|++|++++|. +++.-+.. ... .++|++|++++|..+++ +.. +..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIA-LHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHH-Hhc
Confidence 478888888888877777777888888888888875 44332221 222 35788888888876764 322 456
Q ss_pred cccccceeeccCCCCCC
Q 036414 190 MPKLESLILNPCAYLRK 206 (252)
Q Consensus 190 l~~L~~L~l~~~~~~~~ 206 (252)
+++|++|++++|+....
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 78888888888875443
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=7.7e-07 Score=65.78 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=45.2
Q ss_pred CCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhH-HHHhhccccCC---CCCCceEEeeec-ccCCCCchhh
Q 036414 63 PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQ-ITRMILSEYKF---PPSLTQLSLSNT-ELIEDPMPTL 137 (252)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~~~---~~~L~~l~l~~~-~~~~~~~~~l 137 (252)
.+|+.|++++|. ....-...+..+++|++|++++|..+.+ . +..+..+ +++|++|++++| ++++.....+
T Consensus 61 ~~L~~LDLs~~~--Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g---L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSC--IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC---LERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCC--CCGGGGGGGTTCSCCCEEEEESCTTCCHHH---HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCC--ccHHHHHHhcCCCCCCEEEeCCCCccCHHH---HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 356677777665 4444444556666666666666544411 0 1122221 135666666665 3555555555
Q ss_pred hcCCCCceEEeccCC
Q 036414 138 EKLPHLEVLKLKQNS 152 (252)
Q Consensus 138 ~~~~~L~~L~l~~~~ 152 (252)
..+++|++|++++|.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 556666666665553
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.2e-06 Score=65.59 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=60.5
Q ss_pred hcCCCCCccEEEeecc-C--CccccchhHhhhccCCCCeEEeeeccchhH--HHHhhc-cccCCCCCCceEEeeecccCC
Q 036414 58 ILSRLPTVQTLRISGD-L--SHYHSGVSKSLCELHKLECLKLANQGKMWQ--ITRMIL-SEYKFPPSLTQLSLSNTELIE 131 (252)
Q Consensus 58 ~l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~l~~-~~~~~~~~L~~l~l~~~~~~~ 131 (252)
.+...++|++|++++| . ......+...+...++|++|++++ +.++. ... +. .+... ++|++|++++|.+++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~-l~~~L~~n-~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFA-LAEMLKVN-NTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHH-HHHHHHHC-SSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHH-HHHHHHhC-CCcCEEECcCCcCCH
Confidence 3455666666666666 4 111223344455556677777766 33310 000 12 33333 667777777776654
Q ss_pred CC----chhhhcCCCCceEEe--ccCCccCce---eeecCCCCCccccEEEecCCc
Q 036414 132 DP----MPTLEKLPHLEVLKL--KQNSYFERK---LACVGCSSFPQLKILHLKSML 178 (252)
Q Consensus 132 ~~----~~~l~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~ 178 (252)
.. ...+...++|++|++ ++|.+.... +... ....+.|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 32 233445566777777 556554321 1111 2345667777777766
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=6.7e-07 Score=67.07 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=70.6
Q ss_pred cCCCCCCcEecccCCC-CC-------chhhcCCCCCccEEEeeccC--CccccchhHhhhccCCCCeEEeeeccchhH--
Q 036414 37 SSSLKNLIFISALHPS-SC-------TPDILSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLANQGKMWQ-- 104 (252)
Q Consensus 37 l~~l~~L~~L~~l~~~-~~-------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-- 104 (252)
+...++|++|+ ++.+ .+ +...+...++|++|+|++|. ......+...+...++|++|++++ +.++.
T Consensus 32 l~~~~~L~~L~-L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVN-LNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSG 109 (185)
T ss_dssp HTTCTTCCEEE-CTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHH
T ss_pred HhcCCCCCEEE-ecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHH
Confidence 45666777777 6666 54 33345667788888888875 111223445566667888888887 44411
Q ss_pred HHHhhc-cccCCCCCCceEEe--eecccCCCCc----hhhhcCCCCceEEeccCCcc
Q 036414 105 ITRMIL-SEYKFPPSLTQLSL--SNTELIEDPM----PTLEKLPHLEVLKLKQNSYF 154 (252)
Q Consensus 105 ~~~l~~-~~~~~~~~L~~l~l--~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 154 (252)
... +. .+... ++|++|++ ++|.++.... ..+...++|++|++++|.+.
T Consensus 110 ~~~-l~~~L~~n-~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILA-LVEALQSN-TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH-HHHGGGGC-SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-HHHHHHhC-CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 000 22 45555 78888888 7777764433 33445678888888877653
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=1.1e-05 Score=63.97 Aligned_cols=86 Identities=26% Similarity=0.312 Sum_probs=59.8
Q ss_pred hcCCCCceEEeccCCccCce-eeecCCCCCccccEEEecCCccccceeccccccc--cccceeeccCCCCCCCh------
Q 036414 138 EKLPHLEVLKLKQNSYFERK-LACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMP--KLESLILNPCAYLRKLP------ 208 (252)
Q Consensus 138 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~--~L~~L~l~~~~~~~~~p------ 208 (252)
..+++|+.|++++|.+.... +... ...+++|+.|+|++|. ++++.. +..++ +|+.|++++|+..+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCcCccccCcchhHH
Confidence 45788999999888876522 1111 3468889999998888 776622 34444 88999999988765554
Q ss_pred -HHHHhccccceeecccCC
Q 036414 209 -EELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 209 -~~l~~l~~L~~L~l~~~~ 226 (252)
..+..+|+|+.|+=...+
T Consensus 244 ~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp HHHHHHCTTCCEESSCBCC
T ss_pred HHHHHHCcccCeECCcCCC
Confidence 246788999888765543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=1.3e-05 Score=63.41 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=30.9
Q ss_pred HhhccccEEEecCCCCCC--CCCcccCCCCCCcEecccCCCCC-chhhcCCCC--CccEEEeeccC
Q 036414 14 WMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALHPSSC-TPDILSRLP--TVQTLRISGDL 74 (252)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~--~L~~L~l~~~~ 74 (252)
.++++|+.|++++|.+.. .++..+..+++|+.|+ ++.|.+ ....+..+. +|++|++++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~-Ls~N~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN-LSGNELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEE-CTTSCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEE-CCCCccCCchhhhhcccCCcceEEccCCc
Confidence 345666666666555543 2334445566666666 555554 222222222 55666665554
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.71 E-value=0.00036 Score=58.37 Aligned_cols=194 Identities=15% Similarity=0.089 Sum_probs=96.9
Q ss_pred HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCc-------------
Q 036414 12 DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSH------------- 76 (252)
Q Consensus 12 ~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~------------- 76 (252)
++..|.+|+.+.+. +.........+.++.+|+.+. +..+-. ....+.++..|+.+.+..+...
T Consensus 157 aF~~c~~L~~i~l~-~~~~~I~~~~F~~c~~L~~i~-l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLP-DSMETLHNGLFSGCGKLKSIK-LPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCBCC-CCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecC-CccceeccccccCCCCceEEE-cCCCceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 57788888888887 333323334466677777776 544322 1222344455554444332100
Q ss_pred ------cccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEe
Q 036414 77 ------YHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKL 148 (252)
Q Consensus 77 ------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 148 (252)
....-...+..+.+++.+.+..+.. . +. .+... ..++.+......+ ...++..+.+|+.+.+
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~----i~~~~F~~~-~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKL--R----IGGSLFYNC-SGLKKVIYGSVIV---PEKTFYGCSSLTEVKL 304 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTC--E----ECSCTTTTC-TTCCEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred EEECCCceecccccccccccceeEEcCCCcc--e----eeccccccc-cccceeccCceee---cccccccccccccccc
Confidence 1111112233444555555543111 0 11 22222 4555554443322 2234556777777777
Q ss_pred ccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCChH-HHHhccccceeeccc
Q 036414 149 KQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHW 224 (252)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~ 224 (252)
..+ ... .-... +.++.+|+.+.+..+ ++.+. ..+..|.+|+.+.+..+ ...+.. .+..|++|+.+.+..
T Consensus 305 ~~~-i~~-I~~~a-F~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 305 LDS-VKF-IGEEA-FESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT-CCE-ECTTT-TTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccc-cce-echhh-hcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 432 211 11112 456777888877532 45553 34566778888877554 223332 456677888887753
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=0.00027 Score=59.16 Aligned_cols=195 Identities=10% Similarity=-0.021 Sum_probs=113.7
Q ss_pred ccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC------------------------chhhcC
Q 036414 6 IDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC------------------------TPDILS 60 (252)
Q Consensus 6 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~------------------------~~~~l~ 60 (252)
+..++. ++..+.+|+.+.+..+ ........+.++..|+.+. +..+.. ....+.
T Consensus 173 ~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~-~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~ 250 (394)
T 4fs7_A 173 METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME-FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFY 250 (394)
T ss_dssp CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC-CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTT
T ss_pred cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee-cCCCceEeehhhcccCCCceEEECCCceeccccccc
Confidence 445544 4677888888888632 2222223344555555544 222111 111234
Q ss_pred CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcC
Q 036414 61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKL 140 (252)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~ 140 (252)
.+..++.+.+..+ ........+..+..++.+.... ..+.+ ..+... .+|+.+.+..+ +......++..|
T Consensus 251 ~~~~l~~~~~~~~---~~~i~~~~F~~~~~l~~~~~~~-~~i~~-----~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c 319 (394)
T 4fs7_A 251 GCTDLESISIQNN---KLRIGGSLFYNCSGLKKVIYGS-VIVPE-----KTFYGC-SSLTEVKLLDS-VKFIGEEAFESC 319 (394)
T ss_dssp TCSSCCEEEECCT---TCEECSCTTTTCTTCCEEEECS-SEECT-----TTTTTC-TTCCEEEECTT-CCEECTTTTTTC
T ss_pred ccccceeEEcCCC---cceeeccccccccccceeccCc-eeecc-----cccccc-ccccccccccc-cceechhhhcCC
Confidence 4666777776555 2222334556777888777655 32211 034444 89999988754 443456778889
Q ss_pred CCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCChHHHHhccccce
Q 036414 141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCK 219 (252)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 219 (252)
.+|+.+.+..+ +.. .-... +.++.+|+.+.+..+ ++.+. ..+..|++|+.+.+..+- ..+.....++++|+.
T Consensus 320 ~~L~~i~lp~~-v~~-I~~~a-F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEE-IGKRS-FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCCEECCCTT-CCE-ECTTT-TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred CCCCEEEeCCc-ccE-EhHHh-ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcE
Confidence 99999999533 322 11223 568899999998654 56663 346788999999996642 223334556677665
Q ss_pred e
Q 036414 220 L 220 (252)
Q Consensus 220 L 220 (252)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.39 E-value=0.0042 Score=51.83 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccc
Q 036414 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLES 195 (252)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~ 195 (252)
.+|+.+.+...... ....++..+++|+.+.+. +.... ..... +.++.+|+.+.+..+ ++.+. ..+..|.+|+.
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~-I~~~a-F~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITE-LPESV-FAGCISLKSIDIPEG--ITQILDDAFAGCEQLER 338 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCE-ECTTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred ccccEEecccccce-ecCcccccccccccccCC-Ccccc-cCcee-ecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCE
Confidence 45566655443221 234455667777777773 22221 11122 557788888888643 45553 34677888999
Q ss_pred eeeccCCCCCCCh-HHHHhccccceeecccCC
Q 036414 196 LILNPCAYLRKLP-EELWRIKSLCKLELHWPQ 226 (252)
Q Consensus 196 L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~ 226 (252)
+.+..+ ...+. ..+..|.+|+.+.+.+..
T Consensus 339 i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 339 IAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 998543 23444 356788999999987753
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.38 E-value=0.011 Score=48.78 Aligned_cols=147 Identities=12% Similarity=0.031 Sum_probs=91.2
Q ss_pred hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414 15 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE 92 (252)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (252)
.+..+....+. ..........+....+|+.+. +..+-. ....+..+.+|+.+.+..+ ....-...+..+.+|+
T Consensus 192 ~~~~~~~~~~~-~~~~~i~~~~f~~~~~l~~i~-~~~~~~~i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 192 AAKTGTEFTIP-STVKTVTAYGFSYGKNLKKIT-ITSGVTTLGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCTALK 266 (379)
T ss_dssp TTCCCSEEECC-TTCCEECTTTTTTCSSCSEEE-CCTTCCEECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCTTCC
T ss_pred ccccccccccc-cceeEEeecccccccccceee-eccceeEEccccccCCccceEEEcCCC---ccEeCccccceeehhc
Confidence 34445555444 222222333456667777777 544322 2333567888999988665 2333344567788899
Q ss_pred eEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCcccc
Q 036414 93 CLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170 (252)
Q Consensus 93 ~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 170 (252)
.+.+... +.. ++ .+... ++|+.+.+..+.++.....+|..|.+|+.+.+..+ +.. .-... +.++.+|+
T Consensus 267 ~i~l~~~--i~~----i~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~a-F~~C~~L~ 336 (379)
T 4h09_A 267 TLNFYAK--VKT----VPYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYA-FKNCKALS 336 (379)
T ss_dssp EEEECCC--CSE----ECTTTTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTT-TTTCTTCC
T ss_pred ccccccc--cee----ccccccccc-cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHH-hhCCCCCC
Confidence 9888652 222 33 34444 89999999888777666778889999999999543 322 11123 56788888
Q ss_pred EEEecC
Q 036414 171 ILHLKS 176 (252)
Q Consensus 171 ~L~l~~ 176 (252)
.+.+..
T Consensus 337 ~i~ip~ 342 (379)
T 4h09_A 337 TISYPK 342 (379)
T ss_dssp CCCCCT
T ss_pred EEEECC
Confidence 887743
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.31 E-value=0.021 Score=47.15 Aligned_cols=180 Identities=9% Similarity=0.029 Sum_probs=110.1
Q ss_pred Cccccch-HHHhhccccEEEecCCCCCC------------CCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEE
Q 036414 5 YIDHSSE-DIWMMQKLMHLNFGSITLPA------------PPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLR 69 (252)
Q Consensus 5 ~l~~lp~-~i~~l~~L~~L~l~~~~~~~------------~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~ 69 (252)
.++.+.. ++..+.+++...+....... .....+.....+..+. +..... .......+.+|+.+.
T Consensus 145 ~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~f~~~~~l~~i~ 223 (379)
T 4h09_A 145 SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFT-IPSTVKTVTAYGFSYGKNLKKIT 223 (379)
T ss_dssp TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEE-CCTTCCEECTTTTTTCSSCSEEE
T ss_pred eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccc-cccceeEEeecccccccccceee
Confidence 3445533 46778888888776433211 1111233344455544 332222 333355678899888
Q ss_pred eeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEE
Q 036414 70 ISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLK 147 (252)
Q Consensus 70 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 147 (252)
+... ....-...+..+.+|+.+.+..+ +.. +. .+... .+|+.+.+..+ +......++..|.+|+.+.
T Consensus 224 ~~~~---~~~i~~~~f~~~~~L~~i~lp~~--v~~----I~~~aF~~~-~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 224 ITSG---VTTLGDGAFYGMKALDEIAIPKN--VTS----IGSFLLQNC-TALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CCTT---CCEECTTTTTTCSSCCEEEECTT--CCE----ECTTTTTTC-TTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred eccc---eeEEccccccCCccceEEEcCCC--ccE----eCcccccee-ehhcccccccc-ceecccccccccccccccc
Confidence 8665 33333456678889999988653 212 33 34444 88999988654 3434556788999999999
Q ss_pred eccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeecc
Q 036414 148 LKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNP 200 (252)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 200 (252)
+..+.+.... ... +.++.+|+.+.+..+ ++.+. ..+..|.+|+.+.+..
T Consensus 293 l~~~~i~~I~-~~a-F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 293 MDNSAIETLE-PRV-FMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTTCCEEC-TTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccceeh-hhh-hcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 9766554321 223 668899999998643 56663 3467788898888854
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.12 E-value=0.028 Score=46.72 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=78.1
Q ss_pred hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCch
Q 036414 58 ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMP 135 (252)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~ 135 (252)
.+..+.+|+.+.+... ....-...+..+.+|+.+.+.. .+.. ++ .+... .+|+.+.+..+ ++.....
T Consensus 260 aF~~c~~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~--~i~~----I~~~aF~~c-~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS---VVSIGTGAFMNCPALQDIEFSS--RITE----LPESVFAGC-ISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTCSSCCEEECCTT---CCEECTTTTTTCTTCCEEECCT--TCCE----ECTTTTTTC-TTCCEEECCTT-CCEECTT
T ss_pred eeeecccccEEecccc---cceecCcccccccccccccCCC--cccc----cCceeecCC-CCcCEEEeCCc-ccEehHh
Confidence 3567888999988665 2333345667889999998864 2222 44 44444 89999998754 4434567
Q ss_pred hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccC
Q 036414 136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC 201 (252)
Q Consensus 136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 201 (252)
+|..|.+|+.+.+..+ .... -... +.++++|+.+.+.++. ..+ .....+.+|+.+.+..+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I-~~~a-F~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKI-PESA-FSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBC-CGGG-GTTCTTCCEEEESSCH--HHH-HTCBCCCCC--------
T ss_pred HhhCCCCCCEEEECcc-cCEE-hHhH-hhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeCCC
Confidence 7888999999999543 3221 1123 5689999999998765 222 23445677777777554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.51 E-value=0.02 Score=42.84 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=43.4
Q ss_pred cCCCCCccEEEeecc-C--CccccchhHhhhccCCCCeEEeeeccchhHH--HHhhc-cccCCCCCCceEEeeecccCCC
Q 036414 59 LSRLPTVQTLRISGD-L--SHYHSGVSKSLCELHKLECLKLANQGKMWQI--TRMIL-SEYKFPPSLTQLSLSNTELIED 132 (252)
Q Consensus 59 l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~-~~~~~~~~L~~l~l~~~~~~~~ 132 (252)
+..-+.|++|+|+++ . ......+.+.+..-+.|+.|++++ +.+++- +- +. .+.. .+.|+.|+|+.|.++..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~a-lA~aL~~-N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARG-LIELIET-SPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTT-HHHHHHH-CSSCCEEECCSSBCCHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHH-HHHHHhc-CCccCeEecCCCcCCHH
Confidence 344556666666653 2 112233445555556666676666 333110 00 11 1112 25677777777766643
Q ss_pred Cchh----hhcCCCCceEEecc
Q 036414 133 PMPT----LEKLPHLEVLKLKQ 150 (252)
Q Consensus 133 ~~~~----l~~~~~L~~L~l~~ 150 (252)
.... +..-..|++|++++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHhhCCceeEEECCC
Confidence 3332 22334577777754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.32 E-value=0.0062 Score=45.65 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=60.5
Q ss_pred CCCCCCcEecccCCC-CC-------chhhcCCCCCccEEEeeccC--CccccchhHhhhccCCCCeEEeeeccchhH--H
Q 036414 38 SSLKNLIFISALHPS-SC-------TPDILSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLANQGKMWQ--I 105 (252)
Q Consensus 38 ~~l~~L~~L~~l~~~-~~-------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~ 105 (252)
.+-+.|++|+ ++.+ .+ +.+.+..-+.|++|+|++|. ......+...+..-+.|++|++.+ +.++. .
T Consensus 38 ~~n~~L~~L~-L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVN-INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELL 115 (197)
T ss_dssp TTCSSCCEEE-CTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHH
T ss_pred hcCCCccEEE-CCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHH
Confidence 4455677777 6553 33 33445666777777777775 112233445555667788888877 44411 0
Q ss_pred HHhhc-cccCCCCCCceEEeeec---ccCCC----CchhhhcCCCCceEEeccCC
Q 036414 106 TRMIL-SEYKFPPSLTQLSLSNT---ELIED----PMPTLEKLPHLEVLKLKQNS 152 (252)
Q Consensus 106 ~~l~~-~~~~~~~~L~~l~l~~~---~~~~~----~~~~l~~~~~L~~L~l~~~~ 152 (252)
.. +. .+..- ..|+.|+++++ .+... ....+..-+.|+.|+++.+.
T Consensus 116 ~a-la~aL~~N-~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 AR-LLRSTLVT-QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HH-HHHHTTTT-CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HH-HHHHHhhC-CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 00 11 33332 66888888754 22321 12334556678888775443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.89 E-value=0.055 Score=37.54 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=21.9
Q ss_pred CCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC
Q 036414 116 PPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS 152 (252)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 152 (252)
|+++++|+|++|+++......+..+++|+.|+|.+|.
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3566666666666665555555556666666665544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.96 E-value=0.077 Score=36.77 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCcEecccCCCCC--chhh-cCCCCCccEEEeeccC
Q 036414 42 NLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDL 74 (252)
Q Consensus 42 ~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~ 74 (252)
+|++|+ ++.|.+ ++.. +..+++|+.|+|++|.
T Consensus 32 ~l~~L~-Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELV-LTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEE-CTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEE-CCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555 555554 2222 4445566666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.80 E-value=40 Score=21.63 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=7.4
Q ss_pred cCCCCCccEEEeecc
Q 036414 59 LSRLPTVQTLRISGD 73 (252)
Q Consensus 59 l~~l~~L~~L~l~~~ 73 (252)
+.+|.+|+.+.+...
T Consensus 39 F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 39 FSGCTALEKLILTGE 53 (100)
T ss_dssp STTCTTCCCEEECCS
T ss_pred HhccCCccEEEEcCC
Confidence 444555555555443
Done!