Query 036415
Match_columns 419
No_of_seqs 278 out of 723
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 5.7E-74 1.2E-78 582.1 17.9 373 38-412 81-469 (475)
2 PF04577 DUF563: Protein of un 100.0 4E-29 8.7E-34 232.3 19.4 198 130-351 1-204 (206)
3 COG4421 Capsular polysaccharid 99.8 4.8E-20 1E-24 180.0 17.2 204 121-355 123-331 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 89.5 3 6.6E-05 37.1 9.3 71 245-323 28-99 (140)
5 PF00389 2-Hacid_dh: D-isomer 73.2 16 0.00036 31.4 7.4 78 263-348 9-87 (133)
6 cd01971 Nitrogenase_VnfN_like 72.7 5 0.00011 42.0 4.8 100 244-346 154-261 (427)
7 cd00316 Oxidoreductase_nitroge 72.6 12 0.00025 38.4 7.3 98 243-345 150-251 (399)
8 PF02882 THF_DHG_CYH_C: Tetrah 71.0 13 0.00029 33.8 6.5 70 246-323 37-107 (160)
9 cd01080 NAD_bind_m-THF_DH_Cycl 68.7 12 0.00025 34.4 5.7 73 244-324 43-116 (168)
10 PRK14178 bifunctional 5,10-met 66.6 18 0.00038 36.1 6.8 71 245-323 152-223 (279)
11 COG3959 Transketolase, N-termi 63.5 13 0.00029 35.9 5.0 48 247-297 173-226 (243)
12 cd01967 Nitrogenase_MoFe_alpha 63.1 29 0.00063 35.8 8.0 97 244-345 159-258 (406)
13 TIGR02853 spore_dpaA dipicolin 62.5 36 0.00077 33.8 8.2 58 287-349 200-260 (287)
14 PF01520 Amidase_3: N-acetylmu 61.3 22 0.00047 31.9 6.0 46 265-310 33-81 (175)
15 cd02696 MurNAc-LAA N-acetylmur 59.4 27 0.00058 31.3 6.2 46 265-310 34-82 (172)
16 PF05222 AlaDh_PNT_N: Alanine 59.3 78 0.0017 27.8 9.0 92 256-351 10-115 (136)
17 cd01972 Nitrogenase_VnfE_like 59.0 18 0.00038 37.9 5.6 99 244-345 160-265 (426)
18 PRK08306 dipicolinate synthase 58.8 43 0.00092 33.4 8.1 57 289-350 203-262 (296)
19 PF00148 Oxidored_nitro: Nitro 58.3 15 0.00032 37.8 4.8 98 243-344 142-243 (398)
20 TIGR02883 spore_cwlD N-acetylm 56.3 32 0.0007 31.7 6.3 46 265-310 35-97 (189)
21 PRK08306 dipicolinate synthase 51.7 59 0.0013 32.4 7.7 83 262-351 14-121 (296)
22 cd01980 Chlide_reductase_Y Chl 51.6 16 0.00035 38.1 3.8 95 245-346 159-254 (416)
23 PRK14194 bifunctional 5,10-met 49.4 55 0.0012 33.0 7.0 71 245-323 159-230 (301)
24 PRK14188 bifunctional 5,10-met 49.3 54 0.0012 32.9 7.0 71 245-323 158-229 (296)
25 PRK14175 bifunctional 5,10-met 47.4 45 0.00098 33.4 6.0 71 245-323 158-229 (286)
26 cd01981 Pchlide_reductase_B Pc 45.5 63 0.0014 33.7 7.2 100 244-346 161-265 (430)
27 PRK12548 shikimate 5-dehydroge 44.7 1.1E+02 0.0023 30.3 8.3 93 247-347 152-255 (289)
28 PRK14179 bifunctional 5,10-met 44.7 69 0.0015 32.0 6.9 71 245-323 158-229 (284)
29 TIGR02667 moaB_proteo molybden 44.5 75 0.0016 28.8 6.6 73 244-316 3-83 (163)
30 PRK13337 putative lipid kinase 43.6 1.8E+02 0.0039 28.7 9.8 68 260-327 19-92 (304)
31 PRK10319 N-acetylmuramoyl-l-al 43.1 59 0.0013 32.5 6.2 54 267-325 93-149 (287)
32 cd01078 NAD_bind_H4MPT_DH NADP 42.7 90 0.0019 28.5 7.0 70 247-323 54-128 (194)
33 KOG4698 Uncharacterized conser 40.8 6.6 0.00014 41.7 -1.0 99 257-358 192-292 (475)
34 TIGR03702 lip_kinase_YegS lipi 39.7 2.1E+02 0.0046 28.1 9.5 80 248-328 3-90 (293)
35 PF13271 DUF4062: Domain of un 39.5 76 0.0017 25.2 5.2 44 264-307 17-63 (83)
36 cd01968 Nitrogenase_NifE_I Nit 38.4 56 0.0012 33.9 5.4 97 245-346 158-257 (410)
37 PRK11914 diacylglycerol kinase 38.0 1.5E+02 0.0031 29.4 8.1 68 259-327 25-97 (306)
38 PF03698 UPF0180: Uncharacteri 37.8 41 0.00088 27.3 3.3 41 261-312 9-49 (80)
39 PRK13054 lipid kinase; Reviewe 37.5 2.5E+02 0.0054 27.7 9.7 81 247-327 5-93 (300)
40 PRK02261 methylaspartate mutas 37.5 1.3E+02 0.0029 26.4 6.9 54 244-299 2-55 (137)
41 PRK14191 bifunctional 5,10-met 37.1 1E+02 0.0022 30.9 6.7 69 245-323 157-228 (285)
42 TIGR00177 molyb_syn molybdenum 37.1 61 0.0013 28.5 4.7 52 259-310 26-80 (144)
43 COG1597 LCB5 Sphingosine kinas 36.7 2.9E+02 0.0063 27.5 10.0 91 248-346 6-104 (301)
44 PRK14174 bifunctional 5,10-met 36.5 70 0.0015 32.2 5.5 69 245-323 159-234 (295)
45 PRK14190 bifunctional 5,10-met 36.3 96 0.0021 31.0 6.4 71 245-323 158-229 (284)
46 PF10087 DUF2325: Uncharacteri 36.3 95 0.0021 25.3 5.4 67 261-348 11-79 (97)
47 PRK14189 bifunctional 5,10-met 35.9 96 0.0021 31.0 6.3 71 245-323 158-229 (285)
48 PRK13059 putative lipid kinase 35.9 2.6E+02 0.0057 27.5 9.6 67 261-328 20-92 (295)
49 PRK03094 hypothetical protein; 35.8 55 0.0012 26.5 3.7 22 261-282 9-30 (80)
50 TIGR00147 lipid kinase, YegS/R 35.6 3.2E+02 0.0068 26.6 10.0 81 247-327 3-92 (293)
51 PF02423 OCD_Mu_crystall: Orni 35.2 45 0.00098 33.5 4.0 67 247-325 155-225 (313)
52 COG1703 ArgK Putative periplas 35.0 49 0.0011 33.5 4.0 46 263-308 133-178 (323)
53 PRK15469 ghrA bifunctional gly 34.7 1E+02 0.0023 30.9 6.5 59 263-321 149-223 (312)
54 COG0190 FolD 5,10-methylene-te 34.6 81 0.0017 31.6 5.5 70 244-323 155-227 (283)
55 cd01079 NAD_bind_m-THF_DH NAD 34.2 82 0.0018 29.8 5.2 76 244-323 61-155 (197)
56 cd03129 GAT1_Peptidase_E_like 34.1 1.4E+02 0.0029 27.9 6.8 64 244-307 28-91 (210)
57 TIGR00507 aroE shikimate 5-deh 33.9 1.7E+02 0.0037 28.4 7.7 51 294-348 176-234 (270)
58 PRK02910 light-independent pro 33.5 99 0.0022 33.4 6.5 101 243-346 156-261 (519)
59 PRK13055 putative lipid kinase 33.2 2.9E+02 0.0063 27.8 9.5 68 260-327 20-94 (334)
60 PRK14170 bifunctional 5,10-met 33.0 88 0.0019 31.3 5.5 73 245-330 157-232 (284)
61 TIGR01501 MthylAspMutase methy 32.7 66 0.0014 28.5 4.1 39 264-304 20-59 (134)
62 PLN02897 tetrahydrofolate dehy 32.6 81 0.0018 32.5 5.3 75 245-330 214-289 (345)
63 TIGR01284 alt_nitrog_alph nitr 32.3 48 0.001 35.2 3.8 97 245-346 199-298 (457)
64 PF03575 Peptidase_S51: Peptid 31.7 1E+02 0.0022 27.3 5.3 42 263-305 3-44 (154)
65 PRK13057 putative lipid kinase 31.2 2.5E+02 0.0055 27.4 8.5 67 261-328 14-84 (287)
66 PRK14183 bifunctional 5,10-met 31.1 1.1E+02 0.0023 30.6 5.8 71 245-323 157-228 (281)
67 PRK14177 bifunctional 5,10-met 30.9 1E+02 0.0022 30.9 5.6 71 245-323 159-230 (284)
68 PRK10964 ADP-heptose:LPS hepto 30.9 2E+02 0.0042 28.4 7.7 81 245-327 178-282 (322)
69 PRK14180 bifunctional 5,10-met 30.6 1E+02 0.0022 30.8 5.5 71 245-323 158-229 (282)
70 PF03193 DUF258: Protein of un 30.4 1E+02 0.0022 28.1 5.1 53 263-315 2-58 (161)
71 cd00758 MoCF_BD MoCF_BD: molyb 30.1 89 0.0019 27.0 4.5 53 259-311 18-73 (133)
72 TIGR00640 acid_CoA_mut_C methy 29.8 1.8E+02 0.004 25.4 6.5 41 265-307 22-63 (132)
73 cd03789 GT1_LPS_heptosyltransf 29.5 1.2E+02 0.0027 29.1 6.0 41 285-327 187-227 (279)
74 cd01977 Nitrogenase_VFe_alpha 29.2 69 0.0015 33.4 4.3 97 245-346 162-261 (415)
75 PF01976 DUF116: Protein of un 29.0 1.3E+02 0.0028 27.4 5.5 39 262-303 75-113 (158)
76 PRK14172 bifunctional 5,10-met 29.0 1.1E+02 0.0024 30.4 5.5 71 245-323 158-229 (278)
77 PRK14186 bifunctional 5,10-met 29.0 1.1E+02 0.0024 30.8 5.5 74 246-330 159-233 (297)
78 PF04796 RepA_C: Plasmid encod 28.4 34 0.00074 31.3 1.6 65 253-317 20-84 (161)
79 PRK14182 bifunctional 5,10-met 28.3 1.2E+02 0.0027 30.2 5.6 71 245-323 157-228 (282)
80 PF00670 AdoHcyase_NAD: S-aden 28.1 90 0.002 28.6 4.3 33 292-324 74-110 (162)
81 CHL00076 chlB photochlorophyll 28.1 1.6E+02 0.0035 31.8 7.0 101 243-346 161-266 (513)
82 PRK08618 ornithine cyclodeamin 28.0 96 0.0021 31.2 5.0 64 247-323 154-220 (325)
83 PRK00258 aroE shikimate 5-dehy 27.9 2.4E+02 0.0051 27.6 7.6 52 292-347 181-240 (278)
84 smart00115 CASc Caspase, inter 27.7 2.2E+02 0.0047 27.4 7.2 55 261-317 31-94 (241)
85 PRK12549 shikimate 5-dehydroge 27.7 1.7E+02 0.0038 28.8 6.7 52 292-347 188-246 (284)
86 PRK14169 bifunctional 5,10-met 27.5 1.8E+02 0.0039 29.1 6.6 74 246-330 157-231 (282)
87 PLN02204 diacylglycerol kinase 27.3 3E+02 0.0065 30.5 8.8 67 247-313 162-235 (601)
88 PRK06932 glycerate dehydrogena 27.0 95 0.0021 31.2 4.7 60 264-323 161-232 (314)
89 PRK06823 ornithine cyclodeamin 26.5 88 0.0019 31.6 4.4 65 247-323 155-221 (315)
90 PRK02842 light-independent pro 26.3 1E+02 0.0023 32.2 5.0 95 244-346 165-262 (427)
91 PLN02928 oxidoreductase family 26.3 1.3E+02 0.0029 30.6 5.7 59 263-321 172-259 (347)
92 cd03146 GAT1_Peptidase_E Type 26.2 1.4E+02 0.003 28.0 5.5 61 243-306 29-90 (212)
93 PRK09424 pntA NAD(P) transhydr 26.1 1.6E+02 0.0036 31.8 6.5 95 255-354 12-119 (509)
94 PF03358 FMN_red: NADPH-depend 25.8 1.8E+02 0.0038 25.2 5.7 55 247-302 2-76 (152)
95 PF02737 3HCDH_N: 3-hydroxyacy 25.7 56 0.0012 29.9 2.6 76 264-346 95-173 (180)
96 PRK10792 bifunctional 5,10-met 25.7 1.2E+02 0.0026 30.4 5.0 71 245-323 159-230 (285)
97 COG1920 Predicted nucleotidylt 25.6 80 0.0017 30.0 3.5 57 287-350 104-162 (210)
98 PRK14173 bifunctional 5,10-met 25.5 1.4E+02 0.003 29.9 5.5 75 245-330 155-230 (287)
99 PRK14171 bifunctional 5,10-met 25.5 2E+02 0.0043 28.9 6.5 73 247-330 161-234 (288)
100 PRK09424 pntA NAD(P) transhydr 25.4 2.1E+02 0.0047 31.0 7.2 62 263-324 198-285 (509)
101 cd01965 Nitrogenase_MoFe_beta_ 25.3 90 0.0019 32.6 4.3 100 244-346 154-274 (428)
102 PLN02616 tetrahydrofolate dehy 25.1 1.8E+02 0.004 30.1 6.4 75 245-330 231-306 (364)
103 PF01488 Shikimate_DH: Shikima 25.1 45 0.00098 29.0 1.7 70 246-328 37-114 (135)
104 TIGR01862 N2-ase-Ialpha nitrog 25.1 1.2E+02 0.0026 32.0 5.2 96 245-345 191-289 (443)
105 PRK07589 ornithine cyclodeamin 25.0 1E+02 0.0022 31.7 4.5 65 247-323 156-224 (346)
106 cd03814 GT1_like_2 This family 25.0 3.1E+02 0.0067 26.1 7.8 60 244-305 196-275 (364)
107 PRK14176 bifunctional 5,10-met 24.9 1.3E+02 0.0029 30.1 5.2 71 245-323 164-235 (287)
108 TIGR01283 nifE nitrogenase mol 24.9 1.1E+02 0.0024 32.3 4.9 96 245-345 197-295 (456)
109 PRK14166 bifunctional 5,10-met 24.8 1.5E+02 0.0032 29.6 5.5 75 245-330 157-232 (282)
110 PRK15438 erythronate-4-phospha 24.8 1.5E+02 0.0032 30.9 5.7 60 264-323 130-206 (378)
111 PRK05568 flavodoxin; Provision 24.6 1.5E+02 0.0032 25.4 5.0 50 245-301 3-53 (142)
112 TIGR00561 pntA NAD(P) transhyd 24.5 2.3E+02 0.0049 30.8 7.2 94 255-352 11-116 (511)
113 cd01976 Nitrogenase_MoFe_alpha 24.5 1.3E+02 0.0029 31.4 5.5 97 245-346 172-271 (421)
114 COG0169 AroE Shikimate 5-dehyd 23.7 2.2E+02 0.0048 28.4 6.5 88 244-346 149-244 (283)
115 PRK12749 quinate/shikimate deh 23.6 4.4E+02 0.0095 26.1 8.7 95 245-347 148-252 (288)
116 PRK06487 glycerate dehydrogena 23.6 1.3E+02 0.0027 30.3 4.9 60 264-323 162-232 (317)
117 PRK14181 bifunctional 5,10-met 23.4 1.6E+02 0.0034 29.6 5.4 75 245-330 153-232 (287)
118 PF00781 DAGK_cat: Diacylglyce 22.8 4.7E+02 0.01 22.1 9.4 76 262-345 17-102 (130)
119 cd00886 MogA_MoaB MogA_MoaB fa 22.6 2.1E+02 0.0046 25.3 5.6 56 259-314 19-79 (152)
120 PRK14187 bifunctional 5,10-met 22.5 2.3E+02 0.0051 28.4 6.4 75 245-330 160-235 (294)
121 TIGR01860 VNFD nitrogenase van 22.5 1.1E+02 0.0023 32.7 4.3 97 245-346 201-300 (461)
122 PF12689 Acid_PPase: Acid Phos 22.4 1.4E+02 0.003 27.5 4.4 91 249-350 35-127 (169)
123 TIGR02015 BchY chlorophyllide 22.4 1.2E+02 0.0026 31.8 4.6 81 261-346 178-260 (422)
124 PF08659 KR: KR domain; Inter 22.0 3.2E+02 0.007 24.6 6.9 65 245-311 25-94 (181)
125 TIGR01278 DPOR_BchB light-inde 22.0 2E+02 0.0044 30.9 6.4 100 244-346 157-264 (511)
126 PRK09989 hypothetical protein; 21.8 1.7E+02 0.0036 28.0 5.2 49 261-309 16-64 (258)
127 PF02310 B12-binding: B12 bind 21.7 4.2E+02 0.0092 21.6 7.1 54 247-303 2-57 (121)
128 cd03466 Nitrogenase_NifN_2 Nit 21.5 1.1E+02 0.0023 32.2 4.0 99 244-346 154-275 (429)
129 TIGR02193 heptsyl_trn_I lipopo 21.5 3.9E+02 0.0084 26.1 7.9 79 245-325 179-281 (319)
130 PRK00257 erythronate-4-phospha 21.2 2E+02 0.0043 30.0 5.8 73 246-323 117-206 (381)
131 PF13478 XdhC_C: XdhC Rossmann 20.9 1.2E+02 0.0026 26.7 3.6 74 263-350 11-86 (136)
132 cd08191 HHD 6-hydroxyhexanoate 20.9 4E+02 0.0086 27.4 8.0 59 247-305 24-88 (386)
133 PRK10431 N-acetylmuramoyl-l-al 20.7 2.2E+02 0.0047 30.4 6.1 67 244-310 189-275 (445)
134 TIGR00561 pntA NAD(P) transhyd 20.4 2.2E+02 0.0048 30.9 6.1 60 265-324 199-284 (511)
135 smart00852 MoCF_biosynth Proba 20.2 2.5E+02 0.0055 24.0 5.5 52 260-311 18-72 (135)
136 KOG0081 GTPase Rab27, small G 20.2 2.2E+02 0.0048 26.4 5.2 52 243-294 122-176 (219)
137 TIGR02370 pyl_corrinoid methyl 20.1 3.9E+02 0.0085 24.8 7.2 62 243-306 82-144 (197)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.7e-74 Score=582.11 Aligned_cols=373 Identities=35% Similarity=0.662 Sum_probs=347.5
Q ss_pred CCCCcceecCC-CCcCceEeeCCEEeeCCCcEEEEecCC-----CCCcccccCcccCCCccccCcceeeEEecCC-CCCC
Q 036415 38 LDTTGFSCHTD-LHSELCLVNKPVRIDNSGLTIYVPSSQ-----SYVNRTLKPYANRDDGTAMSRVSPVKIVNGD-VNAP 110 (419)
Q Consensus 38 ~~~~~~~C~~~-~~~d~C~~~gdvr~~~~~~t~~~~~~~-----~~~~~~i~Py~Rk~~~~~m~~v~e~~v~~~~-~~~~ 110 (419)
.+++.+.||++ .++|+|+++||+|+|+.++|++..-.. ...+|+||||+|||+..+|..|+|++|.... +...
T Consensus 81 ~e~~~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~~~r 160 (475)
T KOG4698|consen 81 LEDSSFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLLTFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGSEIR 160 (475)
T ss_pred cCCceEEeeccccccchhhhcCccccCcchhhhhhhccchhhhccccchhcccccccccccccccccccceEEcCCcccc
Confidence 46678999999 999999999999999999999876653 3589999999999999999999999995544 5678
Q ss_pred CCceeecCCeEEEEeCCcCCccchhhhhhhhhHHhhhh--hcCCceEEEEeCCCcchhhhHHHHHHhhcCCceecCCCCC
Q 036415 111 ACRITHDAPAVVFSSGGFTGNVFHEINEVIIPLFITTR--HFRSRLKFLITDYKPWWVSKYSKVLTHLSHYEAINPAANG 188 (419)
Q Consensus 111 ~C~~~~~~Pavvf~~~gy~~N~~H~~~D~liPLf~t~~--~f~~dv~llv~d~~~~w~~ky~~ll~~ls~~~iI~l~~~~ 188 (419)
+|++.|++|+++|++|||++|.||+|+|+++|||++.+ .|+.++++++++..+||..+|.+++++||+||+++++++.
T Consensus 161 ~c~v~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~ 240 (475)
T KOG4698|consen 161 RCDVNHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAEL 240 (475)
T ss_pred eeeeecccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCc
Confidence 99999999999999999999999999999999999999 7899999999999999999999999999999999999888
Q ss_pred CceeeecceEEeeeecCccccCCCCCCCC--CCHHHHHHHHHHHcCCCccc--cc-cccCCCcEEEEEEcCCCCcccCHH
Q 036415 189 SAVHCFPGAVIGLVYHGKLALNATDIPGG--YSAFDFKHFLRESYNLKIKN--VS-EIKREKPILILISRKKSRVVSNEN 263 (419)
Q Consensus 189 ~~~~CF~~~iVGl~~h~~l~i~p~~~~~~--~~i~~F~~fLr~~y~l~~~~--~~-~~~~~~pr~~~i~R~~~R~i~Ne~ 263 (419)
.+|||.+++|||..|.++.++|+..++. .+|.+|+++|+.+|+.+++. .+ ..+.++||+++++|.++|.|+||+
T Consensus 241 -~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~~~kkpri~~lsR~~~r~Ilne~ 319 (475)
T KOG4698|consen 241 -RTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPEPWKKPRITILSRAGSRAILNED 319 (475)
T ss_pred -eEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcChhhCCceEEEecccchhhhcch
Confidence 9999999999999999999999887765 79999999999999874421 11 334567999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCC-CccccCcchhhHHhh
Q 036415 264 EIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLG-LEWASTNYYGAPTKE 342 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g-~~~~~~~~y~~lA~~ 342 (419)
||.++++..||+|.+++++. .++.+|+++.+++|||+|+|||||||++|+||++++|||.|+| .+|.+..+|.++|+.
T Consensus 320 el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~ 398 (475)
T KOG4698|consen 320 ELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKY 398 (475)
T ss_pred hhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhccccce
Confidence 99999999999999999987 9999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCeEEEEEeecCcCccccccCCCCCcccCCccccccchhhhh-hhhcCCccEEEehHHHHHHHHHHHHhh
Q 036415 343 MGVQYLEYKIEPEESSLMQTYGRDHPVITDPASVFAKGYYAAR-AVYIDAQNLKINVKRFKETVVQAKELI 412 (419)
Q Consensus 343 ~gl~Y~~y~~~~~Essl~~~y~~~~~~~~dP~~~~~~gW~~~~-~~yl~~Qdv~vd~~rf~~~L~~a~~~l 412 (419)
|+++|.+|++.++||+|.++|++||+++.||.+..++||+..+ .+||..|+|++|+.||++.+.+|....
T Consensus 399 ~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~ 469 (475)
T KOG4698|consen 399 MTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKE 469 (475)
T ss_pred eccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHH
Confidence 9999999999999999999999999999999999999999888 899999999999999999999996543
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.97 E-value=4e-29 Score=232.28 Aligned_cols=198 Identities=23% Similarity=0.379 Sum_probs=144.1
Q ss_pred CccchhhhhhhhhHHhhhhhc--CCceEEEEeCCCcchhhhH-HHHHHhhcC-CceecCCCCCCceeeecceEEeeeecC
Q 036415 130 GNVFHEINEVIIPLFITTRHF--RSRLKFLITDYKPWWVSKY-SKVLTHLSH-YEAINPAANGSAVHCFPGAVIGLVYHG 205 (419)
Q Consensus 130 ~N~~H~~~D~liPLf~t~~~f--~~dv~llv~d~~~~w~~ky-~~ll~~ls~-~~iI~l~~~~~~~~CF~~~iVGl~~h~ 205 (419)
.|||||+.| ++|.+.+++++ +.+..+++.+.. ...++ .++|+.|+. ...+.+..+ +..||++++++.....
T Consensus 1 ~~~gH~l~d-~l~~l~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~lg~~~~~i~~~~~--~~~~~~~l~~~~~~~~ 75 (206)
T PF04577_consen 1 NNFGHFLID-FLPRLWYLPQYIPDSDIIILVPDDF--DNPPFIREILELLGIPENRIKIDSD--EPVCFERLIVPSPPYS 75 (206)
T ss_pred CCCcEEHHH-HHHHHHHHHHHCCCCCeEEEEcCCc--cccHHHHHHHHHcCCCccEEEEcCC--CeEEECEEEEeCCCcc
Confidence 489999999 46655777765 344456655521 11233 367776663 223322222 6789999988643221
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHcCCCccccccccCCCcEEEEEEc--CCCCcccCHHHHHHHHHHcCCEEEEEcCCC
Q 036415 206 KLALNATDIPGGYSAFDFKHFLRESYNLKIKNVSEIKREKPILILISR--KKSRVVSNENEIVVMMEELGFEVVVTRPNR 283 (419)
Q Consensus 206 ~l~i~p~~~~~~~~i~~F~~fLr~~y~l~~~~~~~~~~~~pr~~~i~R--~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~ 283 (419)
... ........+++++++.++++. ..+||++|++| ++.|++.||+||++.+++.||+++. ++
T Consensus 76 ~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~p~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~~v~--~~- 139 (206)
T PF04577_consen 76 PSD------FNPSFFPALRDRIRRKLNLPP-------PKRPRILYISRRKSGSRRILNEDELLEILKKYGFEVVD--PE- 139 (206)
T ss_pred ccC------cCchHHHHHHHHHHHHhCCcc-------cCCCeEEEEecCCCCCCcCcCHHHHHHHHhhCCeEEEe--CC-
Confidence 100 011223478888888887632 14569999999 4569999999999999999988766 44
Q ss_pred CCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEEEEE
Q 036415 284 MSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYLEYK 351 (419)
Q Consensus 284 ~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~~y~ 351 (419)
.+|+.||++++++||++||+|||||+|++||+|||.||||+|... ...+|..+|..+|++|..+.
T Consensus 140 ~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~---~~~~~~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 140 DLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY---YNRHYRNLAQALGIHYYAVY 204 (206)
T ss_pred CCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC---CCHHHHHHHHHcCCeEEEEe
Confidence 399999999999999999999999999999999999999987763 33459999999999998764
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=4.8e-20 Score=179.98 Aligned_cols=204 Identities=22% Similarity=0.276 Sum_probs=135.2
Q ss_pred EEEEeCCcCCccchhhhhhhhhHHhhhhhcC--CceEEEEeCCCcchhhhHHHHHHhhc-CCceecCCCCCCceeeecce
Q 036415 121 VVFSSGGFTGNVFHEINEVIIPLFITTRHFR--SRLKFLITDYKPWWVSKYSKVLTHLS-HYEAINPAANGSAVHCFPGA 197 (419)
Q Consensus 121 vvf~~~gy~~N~~H~~~D~liPLf~t~~~f~--~dv~llv~d~~~~w~~ky~~ll~~ls-~~~iI~l~~~~~~~~CF~~~ 197 (419)
.||...|++.||.||+.| .+|..+.++..+ .+-.++.....+ |+. +++..++ +.++|.. . ..+|-..+
T Consensus 123 ~v~~~~~~~~~Yghflle-~Lp~l~~i~~l~i~~~~pLl~P~~~~-wqa---dll~m~~~~~~ii~~---~-p~V~~~~a 193 (368)
T COG4421 123 AVFKEWGFSFEYGHFLLE-NLPYLWQIKSLGILSDPPLLYPRLTE-WQA---DLLFMAGPDCPIIAT---A-PAVPLGPA 193 (368)
T ss_pred ceecccccccccchhHHh-hhHHHHHHhhhcccccCcccCCcchH-HHH---hHHhhcCCCCceeec---c-cceeeccc
Confidence 456666678999999999 677666666443 223333333333 443 5666554 5666654 2 45676655
Q ss_pred EEeeeecCccccCCCCCCCCCCHHHHHHHHHHHcCCCccccccccCCCcEEEEEEcCCC--CcccCHHHHHHHHHHcCCE
Q 036415 198 VIGLVYHGKLALNATDIPGGYSAFDFKHFLRESYNLKIKNVSEIKREKPILILISRKKS--RVVSNENEIVVMMEELGFE 275 (419)
Q Consensus 198 iVGl~~h~~l~i~p~~~~~~~~i~~F~~fLr~~y~l~~~~~~~~~~~~pr~~~i~R~~~--R~i~Ne~ev~~~l~~~gf~ 275 (419)
++... .+| .-++.++.... .+.. ....+.+.++.+|+||+.. |+++||+|+..++++.||.
T Consensus 194 vl~~~------~s~---------~~~ha~l~~~~-eR~~-~~~~~~~~adkiYVSR~~qS~R~lvnE~evE~~~q~~G~~ 256 (368)
T COG4421 194 VLPVS------GSP---------RYTHALLAWKD-ERVI-AIKGKGKVADKIYVSRKAQSMRVLVNEEEVERLLQRSGLT 256 (368)
T ss_pred ccCCC------CCc---------hhhhHHHHHHh-hhhh-cccCCCCCcceEEEechhhHHHHhhCHHHHHHHHHhcCcE
Confidence 44210 111 11122222211 0000 0023456678999999743 9999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEEEEEeecC
Q 036415 276 VVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYLEYKIEPE 355 (419)
Q Consensus 276 v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~~y~~~~~ 355 (419)
++..|. ++..||++||+.|.||||.||+||.|++|+++|+.||||-|-..+ .+..+-..+.-|+..|..+.+.+.
T Consensus 257 IVrPEt---l~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~~--~~s~~vr~~~~~~g~~~~~~ve~q 331 (368)
T COG4421 257 IVRPET---LGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTTN--FRSFWVRMANYMSGDYYPGYVEHQ 331 (368)
T ss_pred EEechh---cCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCCc--chHHHHHHhhhcccceeecccccC
Confidence 998654 999999999999999999999999999999999999999994322 344555555555655655656443
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.47 E-value=3 Score=37.14 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIEI 323 (419)
.-+++++.|... .-..+..+|.+.|..|..++... .+++| .+++|||+|..-|.. +-..=|++||++|+-+
T Consensus 28 gk~v~VvGrs~~----vG~pla~lL~~~gatV~~~~~~t-~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vidv 99 (140)
T cd05212 28 GKKVLVVGRSGI----VGAPLQCLLQRDGATVYSCDWKT-IQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATVINC 99 (140)
T ss_pred CCEEEEECCCch----HHHHHHHHHHHCCCEEEEeCCCC-cCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEEEEc
Confidence 447889988764 34467777888899999986432 34544 589999999998875 3445589999999943
No 5
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=73.17 E-value=16 Score=31.35 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccC-CCcEEEEEeeCCCccccCcchhhHHh
Q 036415 263 NEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLP-DGAVMVQVVPLGLEWASTNYYGAPTK 341 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~-pgs~vIEI~P~g~~~~~~~~y~~lA~ 341 (419)
++..+.|++ |++|...+. .+-++-.+.+..+|++|+-.+..++--++-. |+-.+|...--|++..+ -..|+
T Consensus 9 ~~~~~~l~~-~~~v~~~~~---~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id----~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCDS---PSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID----LEAAK 80 (133)
T ss_dssp HHHHHHHHH-TSEEEEESS---SSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-----HHHHH
T ss_pred HHHHHHHHC-CceEEEeCC---CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc----HHHHh
Confidence 566788888 889988762 8888999999999999997777677666633 89999999888864322 34566
Q ss_pred hcCCeEE
Q 036415 342 EMGVQYL 348 (419)
Q Consensus 342 ~~gl~Y~ 348 (419)
..|+...
T Consensus 81 ~~gI~V~ 87 (133)
T PF00389_consen 81 ERGIPVT 87 (133)
T ss_dssp HTTSEEE
T ss_pred hCeEEEE
Confidence 7887543
No 6
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=72.74 E-value=5 Score=42.03 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=69.6
Q ss_pred CCcEEEEEEcCC---CCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec---chhhhhhhccCCC
Q 036415 244 EKPILILISRKK---SRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH---GAGLTNQVFLPDG 317 (419)
Q Consensus 244 ~~pr~~~i~R~~---~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH---GAgLtn~lFm~pg 317 (419)
.++++-+|.... .----|.+|+.++|+++|+++..+-+. ..++ ++++-+.+|..-|.++ |-..+..|.-+=|
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~-~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGP-ESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECC-CCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 455666775432 112357899999999999999776443 2666 6777888998655555 4456777776777
Q ss_pred cEEEEE--eeCCCccccCcchhhHHhhcCCe
Q 036415 318 AVMVQV--VPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 318 s~vIEI--~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
.-.+.. +|.|++- ...++..+++..|+.
T Consensus 232 iP~i~~~~~P~G~~~-t~~~l~~i~~~~g~~ 261 (427)
T cd01971 232 QPYIHSPTLPIGAKA-TAEFLRQVAKFAGIE 261 (427)
T ss_pred CceEecCCCccCHHH-HHHHHHHHHHHhCCC
Confidence 777776 7899642 445889999888864
No 7
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=72.56 E-value=12 Score=38.36 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=70.8
Q ss_pred CCCcEEEEEEcCCC-CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe---cchhhhhhhccCCCc
Q 036415 243 REKPILILISRKKS-RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGA---HGAGLTNQVFLPDGA 318 (419)
Q Consensus 243 ~~~pr~~~i~R~~~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgv---HGAgLtn~lFm~pgs 318 (419)
..++.+-+|.-... . .|.+|+.++|++.|++|..+-+. ..+++|. +-+.+|++-|.+ +|..++..+=-+-|.
T Consensus 150 ~~~~~vNlig~~~~~~--~d~~el~~ll~~~G~~v~~~~~~-~~s~~~i-~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 150 TEPGSVNLIGGYNLGG--GDLRELKRLLEEMGIRVNALFDG-GTTVEEL-RELGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred CCCCcEEEECCCCCch--hhHHHHHHHHHHcCCcEEEEcCC-CCCHHHH-HhhccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 34556667765432 2 58899999999999999877443 2677555 557888877777 567777777656677
Q ss_pred EEEEEeeCCCccccCcchhhHHhhcCC
Q 036415 319 VMVQVVPLGLEWASTNYYGAPTKEMGV 345 (419)
Q Consensus 319 ~vIEI~P~g~~~~~~~~y~~lA~~~gl 345 (419)
-.+...|.|++- ...+++.+|+.+|+
T Consensus 226 p~~~~~p~G~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 226 PYILINPIGLEA-TDAFLRKLAELFGI 251 (399)
T ss_pred CeEEeCCcCHHH-HHHHHHHHHHHhCC
Confidence 777777999653 45689999999985
No 8
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=70.97 E-value=13 Score=33.82 Aligned_cols=70 Identities=19% Similarity=0.400 Sum_probs=46.4
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
-++++|.|... =-.-+..+|.+.|..|...... +..+++ ...+||++|...| +++-..=|.+||++||-+
T Consensus 37 k~v~VvGrs~~----VG~Pla~lL~~~~atVt~~h~~-T~~l~~---~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDv 107 (160)
T PF02882_consen 37 KKVVVVGRSNI----VGKPLAMLLLNKGATVTICHSK-TKNLQE---ITRRADIVVSAVGKPNLIKADWIKPGAVVIDV 107 (160)
T ss_dssp -EEEEE-TTTT----THHHHHHHHHHTT-EEEEE-TT-SSSHHH---HHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE-
T ss_pred CEEEEECCcCC----CChHHHHHHHhCCCeEEeccCC-CCcccc---eeeeccEEeeeeccccccccccccCCcEEEec
Confidence 37899998863 1224677888889999987543 244554 5679999999988 677788899999999976
No 9
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=68.74 E-value=12 Score=34.37 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=50.8
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhh-hhhhccCCCcEEEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGL-TNQVFLPDGAVMVQ 322 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgL-tn~lFm~pgs~vIE 322 (419)
...++++|..... =..-+++.|++.|.+|.+.. .+.++..+.++.||++|+..|+.- -..=.++++.++|.
T Consensus 43 ~gk~vlViG~G~~----~G~~~a~~L~~~g~~V~v~~----r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viID 114 (168)
T cd01080 43 AGKKVVVVGRSNI----VGKPLAALLLNRNATVTVCH----SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVID 114 (168)
T ss_pred CCCEEEEECCcHH----HHHHHHHHHhhCCCEEEEEE----CCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEE
Confidence 4558888887631 01125677788899887764 345677789999999999999952 22223577888888
Q ss_pred Ee
Q 036415 323 VV 324 (419)
Q Consensus 323 I~ 324 (419)
+-
T Consensus 115 la 116 (168)
T cd01080 115 VG 116 (168)
T ss_pred cc
Confidence 85
No 10
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.61 E-value=18 Score=36.09 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-+++++.|...+ -.-+..++...|..|.+..... ....+.+.+||++|+.=| +++-..=+.+||++||.+
T Consensus 152 Gk~V~ViGrs~~v----Grpla~lL~~~~atVtv~hs~t----~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDV 223 (279)
T PRK14178 152 GKRAVVVGRSIDV----GRPMAALLLNADATVTICHSKT----ENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDV 223 (279)
T ss_pred CCEEEEECCCccc----cHHHHHHHHhCCCeeEEEecCh----hHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEe
Confidence 4588999987641 2246667778899998875321 234456789999999999 888777788999999998
No 11
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=63.48 E-value=13 Score=35.92 Aligned_cols=48 Identities=13% Similarity=0.363 Sum_probs=41.7
Q ss_pred EEEEEEcCC------CCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcC
Q 036415 247 ILILISRKK------SRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSC 297 (419)
Q Consensus 247 r~~~i~R~~------~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~a 297 (419)
-+.||+|++ +..|.|.+.+.+..+.+||+|+.++. .+++|.++.+.++
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG---~d~~~i~~a~~~~ 226 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDG---HDIEEIVEALEKA 226 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcC---cCHHHHHHHHHhh
Confidence 567899987 38999999999999999999999876 7888888877776
No 12
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=63.11 E-value=29 Score=35.77 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=67.6
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec---chhhhhhhccCCCcEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH---GAGLTNQVFLPDGAVM 320 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH---GAgLtn~lFm~pgs~v 320 (419)
.+..+-+|.-.. -.-|..|+.++|+++|+++..+-+. ..+++|.- -+.+|.+-|.+. |-.++..|-=+-|...
T Consensus 159 ~~~~VNiig~~~--~~~d~~el~~lL~~~Gi~~~~~~~~-~~~~~~i~-~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~ 234 (406)
T cd01967 159 TPYDVNIIGEYN--IGGDAWVIKPLLEELGIRVNATFTG-DGTVDELR-RAHRAKLNLVHCSRSMNYLAREMEERYGIPY 234 (406)
T ss_pred CCCeEEEEeccc--cchhHHHHHHHHHHcCCEEEEEeCC-CCCHHHHh-hCccCCEEEEEChHHHHHHHHHHHHhhCCCE
Confidence 455677776432 2348899999999999999875453 37886665 588888766654 4456665555556666
Q ss_pred EEEeeCCCccccCcchhhHHhhcCC
Q 036415 321 VQVVPLGLEWASTNYYGAPTKEMGV 345 (419)
Q Consensus 321 IEI~P~g~~~~~~~~y~~lA~~~gl 345 (419)
+...|.|++- ...+++.+++.+|.
T Consensus 235 ~~~~p~G~~~-t~~~l~~l~~~lg~ 258 (406)
T cd01967 235 MEVNFYGFED-TSESLRKIAKFFGD 258 (406)
T ss_pred EEecCCcHHH-HHHHHHHHHHHhCC
Confidence 7777888642 45688999998886
No 13
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=62.47 E-value=36 Score=33.84 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCEEEEecchhhhh-hh--ccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEEE
Q 036415 287 LNKFAALVNSCSVLVGAHGAGLTN-QV--FLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYLE 349 (419)
Q Consensus 287 ~~eq~~l~~~advlVgvHGAgLtn-~l--Fm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~~ 349 (419)
+.+.-+++.++|++|-.-..++.+ -+ .|++++.+|.+.-. + ..+.| ..|+..|++..-
T Consensus 200 ~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~---P-g~tdf-~~Ak~~G~~a~~ 260 (287)
T TIGR02853 200 LNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASK---P-GGTDF-EYAKKRGIKALL 260 (287)
T ss_pred HHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcC---C-CCCCH-HHHHHCCCEEEE
Confidence 445556788999999876666533 22 47999999988532 2 33467 789999998764
No 14
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=61.26 E-value=22 Score=31.88 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=34.3
Q ss_pred HHHHHHHcCCEEEEEcCCC-CCCHHHHHHHH--hcCCEEEEecchhhhh
Q 036415 265 IVVMMEELGFEVVVTRPNR-MSNLNKFAALV--NSCSVLVGAHGAGLTN 310 (419)
Q Consensus 265 v~~~l~~~gf~v~~~e~~~-~~s~~eq~~l~--~~advlVgvHGAgLtn 310 (419)
|.+.|++.|++|....... ..++.+.++.. ..+|++|+.|--+..+
T Consensus 33 l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~ 81 (175)
T PF01520_consen 33 LKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNG 81 (175)
T ss_dssp HHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSS
T ss_pred HHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccC
Confidence 3455566799998866542 46899999988 8999999999766533
No 15
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=59.40 E-value=27 Score=31.27 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=35.6
Q ss_pred HHHHHHHcCCEEEEEcCCC-CCCHHHHHHHHhc--CCEEEEecchhhhh
Q 036415 265 IVVMMEELGFEVVVTRPNR-MSNLNKFAALVNS--CSVLVGAHGAGLTN 310 (419)
Q Consensus 265 v~~~l~~~gf~v~~~e~~~-~~s~~eq~~l~~~--advlVgvHGAgLtn 310 (419)
|.+.|++.|++|+....+. ..++.+.++..+. +|++|..|--+-.+
T Consensus 34 l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 34 LAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 4455556799998766543 3689999999886 99999999877766
No 16
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=59.33 E-value=78 Score=27.84 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=55.8
Q ss_pred CCcccCHHHHHHHHHHcCCEEEEEcCCC-CCCHHH-------------HHHHHhcCCEEEEecchhhhhhhccCCCcEEE
Q 036415 256 SRVVSNENEIVVMMEELGFEVVVTRPNR-MSNLNK-------------FAALVNSCSVLVGAHGAGLTNQVFLPDGAVMV 321 (419)
Q Consensus 256 ~R~i~Ne~ev~~~l~~~gf~v~~~e~~~-~~s~~e-------------q~~l~~~advlVgvHGAgLtn~lFm~pgs~vI 321 (419)
.||+.=..+.++.|.+.|++|.+-.... ...|.+ .-+++..||||+++..-...-.-.|++|.++|
T Consensus 10 E~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 10 ERRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLI 89 (136)
T ss_dssp ---BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEE
T ss_pred CcEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEE
Confidence 4666667778888888899998754321 122221 12688999999999999999999999999999
Q ss_pred EEeeCCCccccCcchhhHHhhcCCeEEEEE
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQYLEYK 351 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~Y~~y~ 351 (419)
=++.+.. .......++ ..|+..+.|.
T Consensus 90 ~~~~~~~---~~~~~~~l~-~~~it~~a~E 115 (136)
T PF05222_consen 90 GFLHPAQ---NKELLEALA-KKGITAFALE 115 (136)
T ss_dssp EE--GGG---HHHHHHHHH-HCTEEEEEGG
T ss_pred Eeecccc---CHHHHHHHH-HCCCEEEEhh
Confidence 7764431 223344444 4677777663
No 17
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=59.02 E-value=18 Score=37.92 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCcEEEEEEcCCC--Cc-ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hh--hhhhhccCCC
Q 036415 244 EKPILILISRKKS--RV-VSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AG--LTNQVFLPDG 317 (419)
Q Consensus 244 ~~pr~~~i~R~~~--R~-i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-Ag--Ltn~lFm~pg 317 (419)
.++.+=+|.-... +. --|..|+.++|++.|++|+.+-+. +.+++|. +-+.+|..-|.++. +| ++..|-=+=|
T Consensus 160 ~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~-~~~~~ei-~~~~~A~lniv~~~~~g~~~a~~Lee~~G 237 (426)
T cd01972 160 QEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAG-GCSVEEL-ERASEAAANVTLCLDLGYYLGAALEQRFG 237 (426)
T ss_pred CCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCC-CCCHHHH-HhcccCCEEEEEChhHHHHHHHHHHHHhC
Confidence 3456667765432 11 367899999999999999877444 3777665 56888888888774 34 4454544557
Q ss_pred cEEEEE-eeCCCccccCcchhhHHhhcCC
Q 036415 318 AVMVQV-VPLGLEWASTNYYGAPTKEMGV 345 (419)
Q Consensus 318 s~vIEI-~P~g~~~~~~~~y~~lA~~~gl 345 (419)
.-.+++ +|+|++- ...+++.+|+..|+
T Consensus 238 iP~~~~~~P~G~~~-T~~~l~~ia~~~g~ 265 (426)
T cd01972 238 VPEIKAPQPYGIEA-TDKWLREIAKVLGM 265 (426)
T ss_pred CCeEecCCccCHHH-HHHHHHHHHHHhCC
Confidence 777776 6888532 34588888888886
No 18
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=58.80 E-value=43 Score=33.39 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=37.9
Q ss_pred HHHHHHhcCCEEEEecchhh-hhhhc--cCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEEEE
Q 036415 289 KFAALVNSCSVLVGAHGAGL-TNQVF--LPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYLEY 350 (419)
Q Consensus 289 eq~~l~~~advlVgvHGAgL-tn~lF--m~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~~y 350 (419)
+..+.+.++|++|..-++.+ +..++ |+||+++|.+.-.. ....| ..|+..|++...+
T Consensus 203 ~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~p----ggtd~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKP----GGTDF-EYAEKRGIKALLA 262 (296)
T ss_pred HHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCC----CCcCe-eehhhCCeEEEEE
Confidence 44466789999997655553 33343 89999999886221 12345 5677888887654
No 19
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=58.27 E-value=15 Score=37.78 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=70.6
Q ss_pred CCCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhh-hhhccCC--CcE
Q 036415 243 REKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLT-NQVFLPD--GAV 319 (419)
Q Consensus 243 ~~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLt-n~lFm~p--gs~ 319 (419)
.+++.+-+|....-- .-|.+|+.++|+++|++|...-+.. .+++|. +-+.+|++-|.++..+.. =.=+|.. |.-
T Consensus 142 ~~~~~VNiiG~~~~~-~~d~~el~~lL~~~Gi~v~~~~~~~-~t~~e~-~~~~~A~lniv~~~~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLG-PGDLEELKRLLEELGIEVNAVFPGG-TTLEEI-RKAPEAALNIVLCPEGGPYAAEWLEERFGIP 218 (398)
T ss_dssp TSSSEEEEEEESTBT-HHHHHHHHHHHHHTTEEEEEEEETT-BCHHHH-HHGGGSSEEEESSCCHHHHHHHHHHHHHT-E
T ss_pred CCCCceEEecCcCCC-cccHHHHHHHHHHCCCceEEEeCCC-CCHHHH-HhCCcCcEEEEeccchhhHHHHHHHHHhCCC
Confidence 345577777665321 1788999999999999988775443 777655 678999999999988655 4444444 777
Q ss_pred EEE-EeeCCCccccCcchhhHHhhcC
Q 036415 320 MVQ-VVPLGLEWASTNYYGAPTKEMG 344 (419)
Q Consensus 320 vIE-I~P~g~~~~~~~~y~~lA~~~g 344 (419)
.+. -.|+|++. ...||+.+|+.+|
T Consensus 219 ~~~~~~p~G~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 219 YLYFPSPYGIEG-TDAWLRAIAEALG 243 (398)
T ss_dssp EEEEC-SBSHHH-HHHHHHHHHHHHT
T ss_pred eeeccccccHHH-HHHHHHHHHHHhC
Confidence 777 67888654 4569999999999
No 20
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=56.28 E-value=32 Score=31.74 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=32.1
Q ss_pred HHHHHHHcCCEEEEEcCCCC---------------CCHHHHHHHHh--cCCEEEEecchhhhh
Q 036415 265 IVVMMEELGFEVVVTRPNRM---------------SNLNKFAALVN--SCSVLVGAHGAGLTN 310 (419)
Q Consensus 265 v~~~l~~~gf~v~~~e~~~~---------------~s~~eq~~l~~--~advlVgvHGAgLtn 310 (419)
|.+.|++.|++|+....+.. .++.|.+++.+ .+|++|+.|--+..+
T Consensus 35 l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 35 LKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 34555667888876555321 26788888777 589999999877643
No 21
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=51.66 E-value=59 Score=32.37 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCEEEEEcCCC-CC-----CHH-HHHHHHhcCCEEEEe----------cch------hhh--hhhccCC
Q 036415 262 ENEIVVMMEELGFEVVVTRPNR-MS-----NLN-KFAALVNSCSVLVGA----------HGA------GLT--NQVFLPD 316 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~-~~-----s~~-eq~~l~~~advlVgv----------HGA------gLt--n~lFm~p 316 (419)
+-++++.|.+.|++|.+..+.. .. .+. ..-+.+.+||++|.+ ++. +++ .+=-||+
T Consensus 14 ~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~ 93 (296)
T PRK08306 14 QLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPE 93 (296)
T ss_pred HHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCC
Confidence 3467888999999999854431 01 111 223568999999988 333 233 3446899
Q ss_pred CcEEEEEeeCCCccccCcchhhHHhhcCCeEEEEE
Q 036415 317 GAVMVQVVPLGLEWASTNYYGAPTKEMGVQYLEYK 351 (419)
Q Consensus 317 gs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~~y~ 351 (419)
|..++ + |+ ........+...|+..+.|.
T Consensus 94 ~~~v~-~---G~---~~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 94 HCTIF-S---GI---ANPYLKELAKETNRKLVELF 121 (296)
T ss_pred CCEEE-E---ec---CCHHHHHHHHHCCCeEEEEe
Confidence 97554 2 32 22335577788999988764
No 22
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=51.56 E-value=16 Score=38.15 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=65.3
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH-hcCCEEEEecchhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV-NSCSVLVGAHGAGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~-~~advlVgvHGAgLtn~lFm~pgs~vIEI 323 (419)
++++.+|..-. -.+.+|+.++|+++|.+++.+-++ .+++|..++- +.+.++++..+...+..|= ..|.-.+..
T Consensus 159 ~~~vniiG~~~---~~d~~ei~~lL~~~Gl~~~~~l~~--~~~~el~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~~~ 232 (416)
T cd01980 159 EPSLALLGEMF---PADPVAIGSVLERMGLAAVPVVPT--REWRELYAAGDAAAVAALHPFYTATIRELE-EAGRPIVSG 232 (416)
T ss_pred CCeEEEEccCC---CCCHHHHHHHHHHcCCceeeEeCC--CCHHHHhhcccCcEEEEeChhHHHHHHHHH-HcCCceecC
Confidence 45788885321 336679999999999999864343 6787765544 3344555566666666664 448777777
Q ss_pred eeCCCccccCcchhhHHhhcCCe
Q 036415 324 VPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 324 ~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
.|.|++ ....+++.+|+..|..
T Consensus 233 ~piG~~-~td~~l~~la~~~g~~ 254 (416)
T cd01980 233 APVGAD-GTAAWLEAVGEALGLD 254 (416)
T ss_pred CCcCch-HHHHHHHHHHHHhCcC
Confidence 899975 3567999999999964
No 23
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.37 E-value=55 Score=33.00 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+...|.+.|+.|.+..... .+++ ++..+|||+|.+-| +++....|++||++||.+
T Consensus 159 Gk~V~vIG~s~i----vG~PmA~~L~~~gatVtv~~~~t-~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDv 230 (301)
T PRK14194 159 GKHAVVIGRSNI----VGKPMAALLLQAHCSVTVVHSRS-TDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVVIDV 230 (301)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEECCCC-CCHH---HHHhcCCEEEEecCChhcccHhhccCCcEEEEe
Confidence 347899999753 11135667777899999985432 3444 45688999998877 467777889999999988
No 24
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.33 E-value=54 Score=32.93 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=51.7
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. --.-++..|.+.|+.|.+.... +.+++ ++..+|||+|.+-| +.+....|++||++||.+
T Consensus 158 Gk~V~viGrs~~----mG~PmA~~L~~~g~tVtv~~~r-T~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDv 229 (296)
T PRK14188 158 GLNAVVIGRSNL----VGKPMAQLLLAANATVTIAHSR-TRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATVIDV 229 (296)
T ss_pred CCEEEEEcCCcc----hHHHHHHHHHhCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhhcchheecCCCEEEEc
Confidence 347889998864 1224566677789999998432 23443 45679999998877 457778889999999987
No 25
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.39 E-value=45 Score=33.35 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|...|..|.++... + .+..+.+.+||++|+.-|.. +...=+.+||++||-+
T Consensus 158 Gk~vvVIGrs~~----VG~pla~lL~~~gatVtv~~s~---t-~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDv 229 (286)
T PRK14175 158 GKNAVVIGRSHI----VGQPVSKLLLQKNASVTILHSR---S-KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDV 229 (286)
T ss_pred CCEEEEECCCch----hHHHHHHHHHHCCCeEEEEeCC---c-hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEc
Confidence 348899999752 0113567777789999987542 1 23446789999999999987 5555568999999988
No 26
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=45.47 E-value=63 Score=33.73 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCcEEEEEEcCC--CCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec---chhhhhhhccCCCc
Q 036415 244 EKPILILISRKK--SRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH---GAGLTNQVFLPDGA 318 (419)
Q Consensus 244 ~~pr~~~i~R~~--~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH---GAgLtn~lFm~pgs 318 (419)
.++++-+|.-.. ...--|..|+.++|+++|.+|..+-+.. .+++|. +-+.+|++-|.++ |..++..+--+=|.
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~-~~~~~i-~~~~~A~lniv~~~~~~~~~a~~L~~~~Gi 238 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEG-ASVDDL-NELPKAWFNIVPYREYGLSAALYLEEEFGM 238 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCC-CCHHHH-HhhhhCeEEEEecHHHHHHHHHHHHHHhCC
Confidence 345666775442 2556788999999999999998754442 677554 5577777777664 55577777666677
Q ss_pred EEEEEeeCCCccccCcchhhHHhhcCCe
Q 036415 319 VMVQVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 319 ~vIEI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
..+...|.|++- ...+.+.+++..|+.
T Consensus 239 P~~~~~p~G~~~-t~~~l~~i~~~~g~~ 265 (430)
T cd01981 239 PSVKITPIGVVA-TARFLREIQELLGIQ 265 (430)
T ss_pred CeEeccCCChHH-HHHHHHHHHHHhCCc
Confidence 777779999643 456889999998876
No 27
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=44.74 E-value=1.1e+02 Score=30.33 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcC--CEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhh---------hhccC
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELG--FEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTN---------QVFLP 315 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~g--f~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn---------~lFm~ 315 (419)
++++++|+.. .....+++.+.+.+.+ ..+...+. .+..+.-+.+..+|+||...-.|+.. .-+++
T Consensus 152 ~V~I~~R~~~-~~~~a~~l~~~l~~~~~~~~~~~~d~---~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~ 227 (289)
T PRK12548 152 EITIFNIKDD-FYERAEQTAEKIKQEVPECIVNVYDL---NDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFR 227 (289)
T ss_pred EEEEEeCCch-HHHHHHHHHHHHhhcCCCceeEEech---hhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcC
Confidence 5888888641 0112345555555433 23333322 22223334677889999888777743 22578
Q ss_pred CCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 316 DGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 316 pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
++.+|++++ +.+ ..+.+-..|+..|.+.
T Consensus 228 ~~~~v~D~v---Y~P-~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 228 KDLVVADTV---YNP-KKTKLLEDAEAAGCKT 255 (289)
T ss_pred CCCEEEEec---CCC-CCCHHHHHHHHCCCee
Confidence 888999986 222 3467888999988764
No 28
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.69 E-value=69 Score=32.04 Aligned_cols=71 Identities=24% Similarity=0.389 Sum_probs=51.5
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. . -.-+..+|.+.|..|.+... ...++ .+..++|||+|.+-| +++....|++||++||.+
T Consensus 158 Gk~v~vIG~S~i---v-G~Pla~lL~~~gatVtv~~s-~t~~l---~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDv 229 (284)
T PRK14179 158 GKHAVVIGRSNI---V-GKPMAQLLLDKNATVTLTHS-RTRNL---AEVARKADILVVAIGRGHFVTKEFVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc---C-cHHHHHHHHHCCCEEEEECC-CCCCH---HHHHhhCCEEEEecCccccCCHHHccCCcEEEEe
Confidence 347899999764 1 11356667778999998733 22333 346789999998887 567778899999999988
No 29
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=44.54 E-value=75 Score=28.79 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCcEEEEEEcCC---CCcccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH---hcCCEEEEecchhhhhhhccC
Q 036415 244 EKPILILISRKK---SRVVSNENEIVVMMEELGFEVVVTR--PNRMSNLNKFAALV---NSCSVLVGAHGAGLTNQVFLP 315 (419)
Q Consensus 244 ~~pr~~~i~R~~---~R~i~Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~l~---~~advlVgvHGAgLtn~lFm~ 315 (419)
.++|+-+|.=.+ ...=.|-.-+.+.+++.|+++.... +++...+.+.++-. +.+|++|.-=|+|.+--=+.+
T Consensus 3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~ 82 (163)
T TIGR02667 3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTP 82 (163)
T ss_pred CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcH
Confidence 345655553222 1223466677888999999887543 33334566666554 469999999888877655554
Q ss_pred C
Q 036415 316 D 316 (419)
Q Consensus 316 p 316 (419)
+
T Consensus 83 e 83 (163)
T TIGR02667 83 E 83 (163)
T ss_pred H
Confidence 4
No 30
>PRK13337 putative lipid kinase; Reviewed
Probab=43.64 E-value=1.8e+02 Score=28.72 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=45.9
Q ss_pred cCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEecchhhhhhhc---cCCC-cEEEEEeeCC
Q 036415 260 SNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV--NSCSVLVGAHGAGLTNQVF---LPDG-AVMVQVVPLG 327 (419)
Q Consensus 260 ~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~--~~advlVgvHGAgLtn~lF---m~pg-s~vIEI~P~g 327 (419)
...+++.+.+++.|+++.+......-...+.++.. ...|+||.+=|-|-.|.+- +..+ ...+=++|.|
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 34568888999999886655444335666666544 4579999999988765443 3222 3467789998
No 31
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=43.12 E-value=59 Score=32.46 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=37.7
Q ss_pred HHHHHcCCEEEEEcCC-CCCCHHHHHHHHh--cCCEEEEecchhhhhhhccCCCcEEEEEee
Q 036415 267 VMMEELGFEVVVTRPN-RMSNLNKFAALVN--SCSVLVGAHGAGLTNQVFLPDGAVMVQVVP 325 (419)
Q Consensus 267 ~~l~~~gf~v~~~e~~-~~~s~~eq~~l~~--~advlVgvHGAgLtn~lFm~pgs~vIEI~P 325 (419)
+.|++.|++|+....+ ...++.+-+++.+ .||++|++|--+.++ |.+.=+|++-
T Consensus 93 ~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~ 149 (287)
T PRK10319 93 SILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFA 149 (287)
T ss_pred HHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEE
Confidence 4445569999887653 3478999888887 899999999655432 3444556653
No 32
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=42.73 E-value=90 Score=28.53 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=43.8
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHH-HcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhh----hccCCCcEEE
Q 036415 247 ILILISRKKSRVVSNENEIVVMME-ELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQ----VFLPDGAVMV 321 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~-~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~----lFm~pgs~vI 321 (419)
++++++|+.. ..+++.+.++ ..+.++...+. .+..+..+.++.+|++|..-.+|..+. .+.+++.+++
T Consensus 54 ~V~l~~R~~~----~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~ 126 (194)
T cd01078 54 RVVLVGRDLE----RAQKAADSLRARFGEGVGAVET---SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAA 126 (194)
T ss_pred EEEEEcCCHH----HHHHHHHHHHhhcCCcEEEeeC---CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEE
Confidence 6778887532 2334444444 24666665543 566666788899999999988888421 1233466677
Q ss_pred EE
Q 036415 322 QV 323 (419)
Q Consensus 322 EI 323 (419)
.+
T Consensus 127 D~ 128 (194)
T cd01078 127 DV 128 (194)
T ss_pred Ec
Confidence 64
No 33
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.83 E-value=6.6 Score=41.69 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=71.2
Q ss_pred CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCCCccccCcch
Q 036415 257 RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYY 336 (419)
Q Consensus 257 R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g~~~~~~~~y 336 (419)
+-++|+.+ +...+++-|-++....-.++.+.+-++.+++.. +.+|+++..--.|.+.+..+++-+|++.++....++
T Consensus 192 pL~it~~~-~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~--~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~ 268 (475)
T KOG4698|consen 192 PLFITEAE-LRFNKEVQFLITETHSWWDMKFGDVVRQLSNYP--VVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPN 268 (475)
T ss_pred hhhcccch-hcccccEEEEEEEcchhhhhhHHHHHHhcCCCc--eEEecCCceEEEeeeeeeeeeecccccccCCcCCCc
Confidence 56667766 434344433333333324588999999999999 889999999999999999999999999887777888
Q ss_pred hhHH--hhcCCeEEEEEeecCcCc
Q 036415 337 GAPT--KEMGVQYLEYKIEPEESS 358 (419)
Q Consensus 337 ~~lA--~~~gl~Y~~y~~~~~Ess 358 (419)
+..+ ..+.+-+..|.....|..
T Consensus 269 ~~~s~~~fr~~l~~a~~~~i~~~~ 292 (475)
T KOG4698|consen 269 GTLSMLDFRNLLDKALSPRIPEAN 292 (475)
T ss_pred cccccccHHHHHHHHhcccccccc
Confidence 5544 455566666665443433
No 34
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=39.65 E-value=2.1e+02 Score=28.08 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=48.6
Q ss_pred EEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEecchhhh----hhhccCC-Cc-E
Q 036415 248 LILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV--NSCSVLVGAHGAGLT----NQVFLPD-GA-V 319 (419)
Q Consensus 248 ~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~--~~advlVgvHGAgLt----n~lFm~p-gs-~ 319 (419)
++|++-+ ++.-....++++.|++.|+++.+..........++++.. ...|+||.+=|-|-- |.++-.+ +. .
T Consensus 3 ~~I~N~~-~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~ 81 (293)
T TIGR03702 3 LLILNGK-QADNEDVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRDDAAP 81 (293)
T ss_pred EEEEeCC-ccchhHHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCCCCCC
Confidence 3455533 222235567788888888886654443334556665443 557999999999954 4453221 22 3
Q ss_pred EEEEeeCCC
Q 036415 320 MVQVVPLGL 328 (419)
Q Consensus 320 vIEI~P~g~ 328 (419)
-+=++|.|.
T Consensus 82 ~lgiiP~GT 90 (293)
T TIGR03702 82 ALGLLPLGT 90 (293)
T ss_pred cEEEEcCCc
Confidence 478899983
No 35
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=39.53 E-value=76 Score=25.20 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCEEEEEcC---CCCCCHHHHHHHHhcCCEEEEecchh
Q 036415 264 EIVVMMEELGFEVVVTRP---NRMSNLNKFAALVNSCSVLVGAHGAG 307 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~---~~~~s~~eq~~l~~~advlVgvHGAg 307 (419)
.+.+.+.+.|++.+..|. ....+.+-..+.+.+||++|+.=|.-
T Consensus 17 ~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~r 63 (83)
T PF13271_consen 17 ALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNR 63 (83)
T ss_pred HHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccc
Confidence 345666666766655443 23466777888999999999987753
No 36
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=38.40 E-value=56 Score=33.93 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=62.7
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec---chhhhhhhccCCCcEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH---GAGLTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH---GAgLtn~lFm~pgs~vI 321 (419)
+..+-+|.= ....-|.+|+.++|+++|+++..+-+. ..+++|.- -+.+|.+-|.+. |..++..|=-+=|.-.+
T Consensus 158 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~eei~-~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~ 233 (410)
T cd01968 158 PYDINLIGE--FNVAGELWGVKPLLEKLGIRVLASITG-DSRVDEIR-RAHRAKLNVVQCSKSMIYLARKMEEKYGIPYI 233 (410)
T ss_pred CCcEEEECC--CCCcccHHHHHHHHHHcCCeEEEEeCC-CCCHHHHH-hhhhCcEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 445566652 233457889999999999999865343 37887754 466666666442 33344433234466667
Q ss_pred EEeeCCCccccCcchhhHHhhcCCe
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
...|+|++. ...+++.+|+..|..
T Consensus 234 ~~~p~G~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 234 EVSFYGIRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred ecCcCcHHH-HHHHHHHHHHHhCCc
Confidence 777788643 456899999998864
No 37
>PRK11914 diacylglycerol kinase; Reviewed
Probab=38.01 E-value=1.5e+02 Score=29.36 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=45.1
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEecchhhhhhhc---cCCCcEEEEEeeCC
Q 036415 259 VSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV--NSCSVLVGAHGAGLTNQVF---LPDGAVMVQVVPLG 327 (419)
Q Consensus 259 i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~--~~advlVgvHGAgLtn~lF---m~pgs~vIEI~P~g 327 (419)
-...+++++.|++.|+++.+......-...++++.. ..+|+||.+=|-|-.|-+= +..+ +.+=++|.|
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~~-~~lgiiP~G 97 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAGTD-IPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccCC-CcEEEEeCC
Confidence 345668888999999887655443323455555433 5679999999988766543 3333 457889998
No 38
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=37.77 E-value=41 Score=27.26 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhh
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQV 312 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~l 312 (419)
++.+|.+.|++.||+|+.++... -+..+|.+| +-|-. +|++
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~---------~~~~~daiV-vtG~~-~n~m 49 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQ---------DLQNVDAIV-VTGQD-TNMM 49 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCcc---------ccCCcCEEE-EECCC-cccc
Confidence 45678999999999999876532 467888887 44433 3544
No 39
>PRK13054 lipid kinase; Reviewed
Probab=37.54 E-value=2.5e+02 Score=27.66 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH--HhcCCEEEEecchhhhhhhc---cC-C-C-c
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAAL--VNSCSVLVGAHGAGLTNQVF---LP-D-G-A 318 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l--~~~advlVgvHGAgLtn~lF---m~-p-g-s 318 (419)
++++|--.+++.-....++++.|++.|+++.+......-...++++. -.+.|+||.+=|-|--|.+- +. + + -
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~~~ 84 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQLEGDAR 84 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhccCCC
Confidence 43333334444444566778888888888665444333455666544 35689999999988655443 21 2 2 2
Q ss_pred EEEEEeeCC
Q 036415 319 VMVQVVPLG 327 (419)
Q Consensus 319 ~vIEI~P~g 327 (419)
..+=++|.|
T Consensus 85 ~~lgiiP~G 93 (300)
T PRK13054 85 PALGILPLG 93 (300)
T ss_pred CcEEEEeCC
Confidence 458899998
No 40
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.50 E-value=1.3e+02 Score=26.44 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=37.9
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSV 299 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~adv 299 (419)
+++++++..=.+-..-+...-+..+|+..||+|+.+-. +.|.++.++...+.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~--~vp~e~i~~~a~~~~~ 55 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV--MTSQEEFIDAAIETDA 55 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCC
Confidence 35666666555545555555566778889999999755 4899999888877544
No 41
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.10 E-value=1e+02 Score=30.88 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=49.9
Q ss_pred CcEEEEEEcCCC--CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecch-hhhhhhccCCCcEEE
Q 036415 245 KPILILISRKKS--RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGA-GLTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~--R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGA-gLtn~lFm~pgs~vI 321 (419)
.-++++|.|.+. | -+..+|.+.|..|.++... + .+..+.+.+||++|+.-|. ++-..=|.+||++||
T Consensus 157 Gk~vvVvGrs~~VG~------Pla~lL~~~gAtVtv~hs~---t-~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVI 226 (285)
T PRK14191 157 GKDVVIIGASNIVGK------PLAMLMLNAGASVSVCHIL---T-KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVV 226 (285)
T ss_pred CCEEEEECCCchhHH------HHHHHHHHCCCEEEEEeCC---c-HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEE
Confidence 348899999854 3 2456666789999887431 1 2334678999999998874 555555779999999
Q ss_pred EE
Q 036415 322 QV 323 (419)
Q Consensus 322 EI 323 (419)
.+
T Consensus 227 Dv 228 (285)
T PRK14191 227 DI 228 (285)
T ss_pred Ee
Confidence 88
No 42
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=37.10 E-value=61 Score=28.55 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHH-HhcCCEEEEecchhhhh
Q 036415 259 VSNENEIVVMMEELGFEVVVTR--PNRMSNLNKFAAL-VNSCSVLVGAHGAGLTN 310 (419)
Q Consensus 259 i~Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~l-~~~advlVgvHGAgLtn 310 (419)
=.|..-+.+.|+++|+++.... +++...+.++++. ..++|++|..=|+|.+.
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~ 80 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGP 80 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 4567778899999999988544 2332456666554 46899999998887654
No 43
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=36.70 E-value=2.9e+02 Score=27.54 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=60.5
Q ss_pred EEEEEcCCC--CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEEEEecchhhhh----hhccCCCcE
Q 036415 248 LILISRKKS--RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVN--SCSVLVGAHGAGLTN----QVFLPDGAV 319 (419)
Q Consensus 248 ~~~i~R~~~--R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~--~advlVgvHGAgLtn----~lFm~pgs~ 319 (419)
.+++++... .--...+++.+.|++.|+++.+......-...+.++... .-|.||+.=|-|..| .++-.+.-.
T Consensus 6 ~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~ 85 (301)
T COG1597 6 LLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP 85 (301)
T ss_pred EEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc
Confidence 355666543 444456688899999998887766654334555444433 789999999998665 555555444
Q ss_pred EEEEeeCCCccccCcchhhHHhhcCCe
Q 036415 320 MVQVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 320 vIEI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
+=|+|.|. ...+|+.+|+.
T Consensus 86 -LgilP~GT-------~NdfAr~Lgip 104 (301)
T COG1597 86 -LGILPGGT-------ANDFARALGIP 104 (301)
T ss_pred -eEEecCCc-------hHHHHHHcCCC
Confidence 88999993 24566666654
No 44
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.54 E-value=70 Score=32.17 Aligned_cols=69 Identities=14% Similarity=0.307 Sum_probs=46.0
Q ss_pred CcEEEEEEcCCC--CcccCHHHHHHHHHH----cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCC
Q 036415 245 KPILILISRKKS--RVVSNENEIVVMMEE----LGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDG 317 (419)
Q Consensus 245 ~pr~~~i~R~~~--R~i~Ne~ev~~~l~~----~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pg 317 (419)
.-++++|.|... |=+ ..+|.+ .|..|.+..... .. ..+.+.+|||+|+.-|.. +-..=|.+||
T Consensus 159 Gk~vvViGrS~iVG~Pl------a~lL~~~~~~~~atVt~~hs~t-~~---l~~~~~~ADIvI~Avg~~~li~~~~vk~G 228 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPM------ANLMLQKLKESNCTVTICHSAT-KD---IPSYTRQADILIAAIGKARFITADMVKPG 228 (295)
T ss_pred CCEEEEECCCCcchHHH------HHHHHhccccCCCEEEEEeCCc-hh---HHHHHHhCCEEEEecCccCccCHHHcCCC
Confidence 347899999865 432 333333 578888875432 33 345689999999988754 3233356999
Q ss_pred cEEEEE
Q 036415 318 AVMVQV 323 (419)
Q Consensus 318 s~vIEI 323 (419)
++||-+
T Consensus 229 avVIDV 234 (295)
T PRK14174 229 AVVIDV 234 (295)
T ss_pred CEEEEe
Confidence 999987
No 45
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.35 E-value=96 Score=31.00 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecch-hhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGA-GLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGA-gLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|... =-.-+..+|.+.|..|.++... +.+ .-+..++|||+|+.-|. ++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~i----VG~Pla~lL~~~~atVt~chs~-t~~---l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDv 229 (284)
T PRK14190 158 GKHVVVVGRSNI----VGKPVGQLLLNENATVTYCHSK-TKN---LAELTKQADILIVAVGKPKLITADMVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEEeCC-chh---HHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEe
Confidence 448899999864 1113556677778999887432 122 33478999999988774 56666678999999988
No 46
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.26 E-value=95 Score=25.32 Aligned_cols=67 Identities=7% Similarity=0.150 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHcCCEEEEE--cCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCCCccccCcchhh
Q 036415 261 NENEIVVMMEELGFEVVVT--RPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYYGA 338 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~--e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g~~~~~~~~y~~ 338 (419)
++.++.+.++++|++.+.. +......-...-+.+.+||+||-+-+. +.+.....-..
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~---------------------vsH~~~~~vk~ 69 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY---------------------VSHNAMWKVKK 69 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC---------------------cChHHHHHHHH
Confidence 4667888899999999887 222212222345578999998754332 22222234567
Q ss_pred HHhhcCCeEE
Q 036415 339 PTKEMGVQYL 348 (419)
Q Consensus 339 lA~~~gl~Y~ 348 (419)
.|+..|+.++
T Consensus 70 ~akk~~ip~~ 79 (97)
T PF10087_consen 70 AAKKYGIPII 79 (97)
T ss_pred HHHHcCCcEE
Confidence 7777777665
No 47
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.93 E-value=96 Score=31.02 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=51.7
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|.+.|..|..+... +.++ -..+.+||++|..-| +++-+.=|++||++||-+
T Consensus 158 Gk~vvViGrs~i----VGkPla~lL~~~~atVt~~hs~-t~~l---~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDV 229 (285)
T PRK14189 158 GAHAVVIGRSNI----VGKPMAMLLLQAGATVTICHSK-TRDL---AAHTRQADIVVAAVGKRNVLTADMVKPGATVIDV 229 (285)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEecCC-CCCH---HHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEc
Confidence 447899999864 1224677778889999886432 2333 356889999999888 456666789999999987
No 48
>PRK13059 putative lipid kinase; Reviewed
Probab=35.86 E-value=2.6e+02 Score=27.48 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHH-H-HhcCCEEEEecchhhhhhhc---cCCC-cEEEEEeeCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAA-L-VNSCSVLVGAHGAGLTNQVF---LPDG-AVMVQVVPLGL 328 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~-l-~~~advlVgvHGAgLtn~lF---m~pg-s~vIEI~P~g~ 328 (419)
..+++.+.+++.|+++.+.+....... ++++ . -..+|+||.+=|-|-.|.+= +..+ .+-+=|+|.|.
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~GT 92 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVGT 92 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCCC
Confidence 346788889999999776555432232 3322 2 24579999999999766442 3222 24578899983
No 49
>PRK03094 hypothetical protein; Provisional
Probab=35.77 E-value=55 Score=26.54 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPN 282 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~ 282 (419)
++..|.+.|++.||+|+.++.+
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcc
Confidence 5667899999999999987653
No 50
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=35.60 E-value=3.2e+02 Score=26.63 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=49.8
Q ss_pred EEEEEEcCCC---CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEecchhhhhh----hccCCC
Q 036415 247 ILILISRKKS---RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV--NSCSVLVGAHGAGLTNQ----VFLPDG 317 (419)
Q Consensus 247 r~~~i~R~~~---R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~--~~advlVgvHGAgLtn~----lFm~pg 317 (419)
|+.+|-...+ +.-...+++.+.+++.|+++.+......-...++++.. ..+|++|.+=|-|--|. +.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~ 82 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQLDD 82 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcCCC
Confidence 4555555532 22223457888888889887765544323455555422 34789999999886554 544334
Q ss_pred cEEEEEeeCC
Q 036415 318 AVMVQVVPLG 327 (419)
Q Consensus 318 s~vIEI~P~g 327 (419)
...+=++|.|
T Consensus 83 ~~~lgiiP~G 92 (293)
T TIGR00147 83 IPALGILPLG 92 (293)
T ss_pred CCcEEEEcCc
Confidence 4467788998
No 51
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=35.25 E-value=45 Score=33.46 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhh----hhhhccCCCcEEEE
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGL----TNQVFLPDGAVMVQ 322 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgL----tn~lFm~pgs~vIE 322 (419)
++.+.+|+. .+.+++++.++++|++++..+. .+ +.+.+||||+..-.|.- -..=|++||+.|+-
T Consensus 155 ~v~v~~r~~----~~~~~~~~~~~~~~~~v~~~~~-----~~---~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~ 222 (313)
T PF02423_consen 155 EVRVYSRSP----ERAEAFAARLRDLGVPVVAVDS-----AE---EAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINA 222 (313)
T ss_dssp EEEEE-SSH----HHHHHHHHHHHCCCTCEEEESS-----HH---HHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE
T ss_pred EEEEEccCh----hHHHHHHHhhccccccceeccc-----hh---hhcccCCEEEEccCCCCCCccccHHHcCCCcEEEE
Confidence 566777653 4456777777778888887643 22 46999999999988876 56668999999887
Q ss_pred Eee
Q 036415 323 VVP 325 (419)
Q Consensus 323 I~P 325 (419)
|=.
T Consensus 223 iGs 225 (313)
T PF02423_consen 223 IGS 225 (313)
T ss_dssp -S-
T ss_pred ecC
Confidence 743
No 52
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=35.04 E-value=49 Score=33.55 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhh
Q 036415 263 NEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGL 308 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgL 308 (419)
.|++++|+..||+++++|.-.----+-.+.-+..+-++|.+.|+|=
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD 178 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGD 178 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCc
Confidence 4789999999999999997321112223344555556666666663
No 53
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=34.69 E-value=1e+02 Score=30.92 Aligned_cols=59 Identities=25% Similarity=0.481 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCC--------CHHHHHHHHhcCCEEEEecc-----hhhhhh-hc--cCCCcEEE
Q 036415 263 NEIVVMMEELGFEVVVTRPNRMS--------NLNKFAALVNSCSVLVGAHG-----AGLTNQ-VF--LPDGAVMV 321 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~~--------s~~eq~~l~~~advlVgvHG-----AgLtn~-lF--m~pgs~vI 321 (419)
.++++.|+.+|++|...+..... +..+.-+++..||+++-.-- -++.|. +| |+||+++|
T Consensus 149 ~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI 223 (312)
T PRK15469 149 SKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLL 223 (312)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE
No 54
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=34.60 E-value=81 Score=31.56 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=55.0
Q ss_pred CCcEEEEEEcCCC--CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEE
Q 036415 244 EKPILILISRKKS--RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVM 320 (419)
Q Consensus 244 ~~pr~~~i~R~~~--R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~v 320 (419)
..-++++|.|.+. | =+..+|...+..|.+.... + ++-.+..++|||+|..-| +++-..=|..||++|
T Consensus 155 ~Gk~~vVVGrS~iVGk------Pla~lL~~~naTVtvcHs~---T-~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavV 224 (283)
T COG0190 155 RGKNVVVVGRSNIVGK------PLALLLLNANATVTVCHSR---T-KDLASITKNADIVVVAVGKPHFIKADMVKPGAVV 224 (283)
T ss_pred CCCEEEEECCCCcCcH------HHHHHHHhCCCEEEEEcCC---C-CCHHHHhhhCCEEEEecCCccccccccccCCCEE
Confidence 3447899999875 4 3566777789999987442 2 456678999999999888 578888899999999
Q ss_pred EEE
Q 036415 321 VQV 323 (419)
Q Consensus 321 IEI 323 (419)
|-+
T Consensus 225 IDV 227 (283)
T COG0190 225 IDV 227 (283)
T ss_pred Eec
Confidence 988
No 55
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=34.20 E-value=82 Score=29.85 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=51.4
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEc--------------CCCC--CCHHH-HHHHHhcCCEEEEecch
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTR--------------PNRM--SNLNK-FAALVNSCSVLVGAHGA 306 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e--------------~~~~--~s~~e-q~~l~~~advlVgvHGA 306 (419)
..-++++|.|... + -.-+..+|.+.|..|.+++ .... -+.+. ..+.+++|||+|..-|-
T Consensus 61 ~GK~vvVIGrS~i---V-GkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 61 YGKTITIINRSEV---V-GRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCEEEEECCCcc---c-hHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 3458899999864 1 1135667777899998873 1110 11111 33578999999998875
Q ss_pred -hh-hhhhccCCCcEEEEE
Q 036415 307 -GL-TNQVFLPDGAVMVQV 323 (419)
Q Consensus 307 -gL-tn~lFm~pgs~vIEI 323 (419)
++ -..=|.+||++||-+
T Consensus 137 ~~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 137 PNYKVPTELLKDGAICINF 155 (197)
T ss_pred CCCccCHHHcCCCcEEEEc
Confidence 44 577789999999987
No 56
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=34.10 E-value=1.4e+02 Score=27.87 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=44.1
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG 307 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg 307 (419)
..+++++|.-...-.=...++..+.++++|++++.+..-...+-++..+.+.+||+|+-.=|.-
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~ 91 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ 91 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH
Confidence 5789999987654212333567788888999887654422245678889999999988655544
No 57
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=33.89 E-value=1.7e+02 Score=28.40 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=36.9
Q ss_pred HhcCCEEEEecchhhhhh--------hccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEE
Q 036415 294 VNSCSVLVGAHGAGLTNQ--------VFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYL 348 (419)
Q Consensus 294 ~~~advlVgvHGAgLtn~--------lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~ 348 (419)
..++|++|..-++|+..- -+++++..|+++.-. + ..+.+...|+..|++++
T Consensus 176 ~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~---p-~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 176 LHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYN---P-GETPFLAEAKSLGTKTI 234 (270)
T ss_pred ccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccC---C-CCCHHHHHHHHCCCeee
Confidence 357999999999987432 237889999999522 1 23468888899998764
No 58
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=33.47 E-value=99 Score=33.38 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCcEEEEEEcC--CCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccC--CC
Q 036415 243 REKPILILISRK--KSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLP--DG 317 (419)
Q Consensus 243 ~~~pr~~~i~R~--~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~--pg 317 (419)
..++++-+|.=. +.+.--|..|+.++|+++|.+|..+-+.. .++ ++++-+.+|++-|.+++ .|..=.-+|. =|
T Consensus 156 ~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g-~s~-~di~~l~~A~~nivl~~~~g~~~A~~Lee~fG 233 (519)
T PRK02910 156 TARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLG-ASP-ADLKRLPAAWFNVVLYREIGESAARYLEREFG 233 (519)
T ss_pred CCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCC-CCH-HHHHhcccCcEEEEeCHHHHHHHHHHHHHHhC
Confidence 346677777543 23555788899999999999998875542 666 45567899999998887 4655555554 34
Q ss_pred cEEEEEeeCCCccccCcchhhHHhhcCCe
Q 036415 318 AVMVQVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 318 s~vIEI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
.-.+...|.|++- ...+-..+|+.+|+.
T Consensus 234 iP~i~~~PiG~~~-T~~fL~~la~~~g~~ 261 (519)
T PRK02910 234 QPYVKTVPIGVGA-TARFIREVAELLNLD 261 (519)
T ss_pred CcccccccccHHH-HHHHHHHHHHHhCCC
Confidence 5556678999642 445788899888874
No 59
>PRK13055 putative lipid kinase; Reviewed
Probab=33.21 E-value=2.9e+02 Score=27.79 Aligned_cols=68 Identities=21% Similarity=0.388 Sum_probs=43.1
Q ss_pred cCHHHHHHHHHHcCCEEEEEcCC-CCCCHHHHHHH--HhcCCEEEEecchhhhhhhc---cC-CCcEEEEEeeCC
Q 036415 260 SNENEIVVMMEELGFEVVVTRPN-RMSNLNKFAAL--VNSCSVLVGAHGAGLTNQVF---LP-DGAVMVQVVPLG 327 (419)
Q Consensus 260 ~Ne~ev~~~l~~~gf~v~~~e~~-~~~s~~eq~~l--~~~advlVgvHGAgLtn~lF---m~-pgs~vIEI~P~g 327 (419)
...+++.+.|++.|+++.+.... ......++++. -.+.|+||.+=|-|-.|-+- +. .....+=|+|.|
T Consensus 20 ~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 20 KNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 34577888999988876654332 11344444433 34679999999999665443 22 223568899999
No 60
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.01 E-value=88 Score=31.29 Aligned_cols=73 Identities=18% Similarity=0.392 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCC--CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEE
Q 036415 245 KPILILISRKKS--RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~--R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vI 321 (419)
.-++++|.|.+. | =+..+|.+.|..|.++... +-++ -+...+|||+|..-| +++-..=|.+||++||
T Consensus 157 Gk~vvVvGrS~iVGk------Pla~lL~~~~atVtichs~-T~~l---~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVI 226 (284)
T PRK14170 157 GKRAVVIGRSNIVGK------PVAQLLLNENATVTIAHSR-TKDL---PQVAKEADILVVATGLAKFVKKDYIKPGAIVI 226 (284)
T ss_pred CCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 348899999865 3 3556667778999887543 2333 346899999999888 5677777889999999
Q ss_pred EEeeCCCcc
Q 036415 322 QVVPLGLEW 330 (419)
Q Consensus 322 EI~P~g~~~ 330 (419)
-+ |+++
T Consensus 227 Dv---Gin~ 232 (284)
T PRK14170 227 DV---GMDR 232 (284)
T ss_pred Ec---cCcc
Confidence 87 6543
No 61
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.67 E-value=66 Score=28.50 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEec
Q 036415 264 EIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSV-LVGAH 304 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~adv-lVgvH 304 (419)
-+..+|+..||+|+.+-. +.|.++.++.....++ +||+-
T Consensus 20 iv~~~l~~~GfeVi~LG~--~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 20 ILDHAFTNAGFNVVNLGV--LSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEe
Confidence 356778889999998654 4899999998888666 55553
No 62
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=32.56 E-value=81 Score=32.45 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=54.1
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. +- .-+..+|.+.|..|.++... +.+ +.+...+|||+|..-| +++-..=|.+||++||-+
T Consensus 214 GK~vvVIGRS~i---VG-kPla~LL~~~~ATVTicHs~-T~n---l~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDV 285 (345)
T PLN02897 214 GKNAVVIGRSNI---VG-LPMSLLLQRHDATVSTVHAF-TKD---PEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDV 285 (345)
T ss_pred CCEEEEECCCcc---cc-HHHHHHHHHCCCEEEEEcCC-CCC---HHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEc
Confidence 347889999864 11 13456677778898887542 233 3456899999998877 678888889999999987
Q ss_pred eeCCCcc
Q 036415 324 VPLGLEW 330 (419)
Q Consensus 324 ~P~g~~~ 330 (419)
|+++
T Consensus 286 ---Gin~ 289 (345)
T PLN02897 286 ---GTTP 289 (345)
T ss_pred ---cccc
Confidence 6543
No 63
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=32.31 E-value=48 Score=35.16 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=65.1
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec---chhhhhhhccCCCcEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH---GAGLTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH---GAgLtn~lFm~pgs~vI 321 (419)
+..+-+|. ....--+.+|+.++|+++|++++..-+. +.+++|. +-+.+|+.-|.+. |..++..|=-+=|.-.+
T Consensus 199 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gl~v~~~~~g-~~s~~ei-~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~ 274 (457)
T TIGR01284 199 EYDVNLIG--EYNIQGDLWVLKKYFERMGIQVLSTFTG-NGCYDEL-RWMHRAKLNVVRCARSANYIANELEERYGIPRL 274 (457)
T ss_pred CCeEEEEc--cCCchhhHHHHHHHHHHcCCeEEEEECC-CCCHHHH-HhccccCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 44566664 2222346678899999999999754343 3677665 5577777755543 44466666555577788
Q ss_pred EEeeCCCccccCcchhhHHhhcCCe
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
.+-|+|++. ...+.+.+|+..|+.
T Consensus 275 ~~~~~G~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 275 DIDFFGFEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 887888653 446889999999965
No 64
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=31.71 E-value=1e+02 Score=27.30 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc
Q 036415 263 NEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG 305 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG 305 (419)
+++.+.++++|+++..++... .+-.+..+.+.+||+|.-.=|
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~-~~~~~~~~~i~~ad~I~~~GG 44 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSD-RNDADILEAIREADAIFLGGG 44 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTS-CGHHHHHHHHHHSSEEEE--S
T ss_pred HHHHHHHHHCCCEEEEEeccC-CChHHHHHHHHhCCEEEECCC
Confidence 345566667777776665543 455566666777776664433
No 65
>PRK13057 putative lipid kinase; Reviewed
Probab=31.20 E-value=2.5e+02 Score=27.40 Aligned_cols=67 Identities=18% Similarity=0.350 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH-HhcCCEEEEecchhhhhhh---ccCCCcEEEEEeeCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAAL-VNSCSVLVGAHGAGLTNQV---FLPDGAVMVQVVPLGL 328 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l-~~~advlVgvHGAgLtn~l---Fm~pgs~vIEI~P~g~ 328 (419)
..+++.+.|++.|+++.....+......+.++. -...|.||.+=|-|--|.+ .+..+ .-+=++|.|.
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~~~-~~lgiiP~GT 84 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVETG-LPLGILPLGT 84 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhcCC-CcEEEECCCC
Confidence 467888999999999777655433344444433 4667999999998875554 23333 3477889983
No 66
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.13 E-value=1.1e+02 Score=30.63 Aligned_cols=71 Identities=10% Similarity=0.217 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. + -.-+..+|.+.|..|.+... .+..+ .+...+|||+|..-| ++|-..=|.+||++||.+
T Consensus 157 Gk~vvViGrS~~---V-G~Pla~lL~~~~AtVti~hs-~T~~l---~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDv 228 (281)
T PRK14183 157 GKDVCVVGASNI---V-GKPMAALLLNANATVDICHI-FTKDL---KAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDI 228 (281)
T ss_pred CCEEEEECCCCc---c-hHHHHHHHHHCCCEEEEeCC-CCcCH---HHHHhhCCEEEEecCcccccCHHHcCCCcEEEEe
Confidence 337899999864 1 11255666777888887633 22333 457899999999887 577777789999999987
No 67
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.93 E-value=1e+02 Score=30.85 Aligned_cols=71 Identities=18% Similarity=0.407 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|.+.|..|.++... +.+++ +...+|||+|+.-| +++-..=|.+||++||-+
T Consensus 159 Gk~vvViGrS~i----VGkPla~lL~~~~atVt~chs~-T~~l~---~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDv 230 (284)
T PRK14177 159 GKNAVVVGRSPI----LGKPMAMLLTEMNATVTLCHSK-TQNLP---SIVRQADIIVGAVGKPEFIKADWISEGAVLLDA 230 (284)
T ss_pred CCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEe
Confidence 347889998864 1123566777789999987543 23343 56899999998877 566677789999999987
No 68
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=30.87 E-value=2e+02 Score=28.45 Aligned_cols=81 Identities=10% Similarity=0.157 Sum_probs=49.6
Q ss_pred CcEEEEEEcCC--CCccc--CHHHHHHHHHHcCCEEEEE-cC-------------------CCCCCHHHHHHHHhcCCEE
Q 036415 245 KPILILISRKK--SRVVS--NENEIVVMMEELGFEVVVT-RP-------------------NRMSNLNKFAALVNSCSVL 300 (419)
Q Consensus 245 ~pr~~~i~R~~--~R~i~--Ne~ev~~~l~~~gf~v~~~-e~-------------------~~~~s~~eq~~l~~~advl 300 (419)
++.++++.-.. .|++- +-.||++.+.+.|++++.. .. ...+++.|-+.+++.||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 34454444332 36665 4457777776678887664 11 1237999999999999999
Q ss_pred EEecchhhhhhhccCCCcEEEEEeeCC
Q 036415 301 VGAHGAGLTNQVFLPDGAVMVQVVPLG 327 (419)
Q Consensus 301 VgvHGAgLtn~lFm~pgs~vIEI~P~g 327 (419)
||.=.. ..|+--+ =|+-+|-||...
T Consensus 258 I~nDSG-p~HlA~A-~g~p~valfGpt 282 (322)
T PRK10964 258 VSVDTG-LSHLTAA-LDRPNITLYGPT 282 (322)
T ss_pred EecCCc-HHHHHHH-hCCCEEEEECCC
Confidence 997543 3333221 145566676543
No 69
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.60 E-value=1e+02 Score=30.82 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=51.3
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. + -.-+..+|.+.|..|.++... +.+ ..+...+|||+|..-| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~~---V-GkPla~lL~~~~ATVt~chs~-T~d---l~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDv 229 (282)
T PRK14180 158 GAYAVVVGASNV---V-GKPVSQLLLNAKATVTTCHRF-TTD---LKSHTTKADILIVAVGKPNFITADMVKEGAVVIDV 229 (282)
T ss_pred CCEEEEECCCCc---c-hHHHHHHHHHCCCEEEEEcCC-CCC---HHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEe
Confidence 347899999864 1 113556667778999887432 233 3446899999999887 567777788999999987
No 70
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=30.42 E-value=1e+02 Score=28.14 Aligned_cols=53 Identities=26% Similarity=0.494 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh-cCCEEEEecchh---hhhhhccC
Q 036415 263 NEIVVMMEELGFEVVVTRPNRMSNLNKFAALVN-SCSVLVGAHGAG---LTNQVFLP 315 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~-~advlVgvHGAg---Ltn~lFm~ 315 (419)
+++++..++.|++|+.+.......+++..+.+. ..-+++|.-|+| |.|.|.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 577888899999999988765577888777665 466788999988 77877754
No 71
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.06 E-value=89 Score=26.99 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHH-HhcCCEEEEecchhhhhh
Q 036415 259 VSNENEIVVMMEELGFEVVVTR--PNRMSNLNKFAAL-VNSCSVLVGAHGAGLTNQ 311 (419)
Q Consensus 259 i~Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~l-~~~advlVgvHGAgLtn~ 311 (419)
=.|-.-+.+.++++|+++.... +++...+.++++. ..++|++|.-=|.|.+.-
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~~ 73 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGRR 73 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCC
Confidence 3456677788999999987643 2333456677654 466999999988887643
No 72
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.80 E-value=1.8e+02 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEecchh
Q 036415 265 IVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSV-LVGAHGAG 307 (419)
Q Consensus 265 v~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~adv-lVgvHGAg 307 (419)
+..+++..||+|+.... ..|.++.++.....++ +|++-+.-
T Consensus 22 v~~~l~~~GfeVi~lg~--~~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 22 IATAYADLGFDVDVGPL--FQTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEcCch
Confidence 45677778999998654 3788888777776666 55554433
No 73
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.51 E-value=1.2e+02 Score=29.08 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=31.3
Q ss_pred CCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCC
Q 036415 285 SNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLG 327 (419)
Q Consensus 285 ~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g 327 (419)
.++.|.+.+++.||++||+-. |..|+-- --|+.+|-|++..
T Consensus 187 ~~l~e~~~li~~~~l~I~~Ds-g~~HlA~-a~~~p~i~l~g~~ 227 (279)
T cd03789 187 TSLRELAALLARADLVVTNDS-GPMHLAA-ALGTPTVALFGPT 227 (279)
T ss_pred CCHHHHHHHHHhCCEEEeeCC-HHHHHHH-HcCCCEEEEECCC
Confidence 799999999999999999975 4444442 3367777787654
No 74
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=29.23 E-value=69 Score=33.35 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=63.0
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hh--hhhhhccCCCcEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AG--LTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-Ag--Ltn~lFm~pgs~vI 321 (419)
+.++-+|. ....--|.+|+.++|+++|++++..-+. ..+++|. +-+.+|..-|.+.+ +| ++..|==+=|.-.+
T Consensus 162 ~~~VNliG--~~~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~t~~ei-~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 162 DYTINYIG--DYNIQGDTEVLQKYFERMGIQVLSTFTG-NGTYDDL-RWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred CCcEEEEc--cCCCcccHHHHHHHHHHcCCeEEEEECC-CCCHHHH-HhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 44566664 2233456788999999999999744343 3777665 56777777665543 23 34444223467677
Q ss_pred EEeeCCCccccCcchhhHHhhcCCe
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
.+-|+|++- ...+++.+|+.+|+.
T Consensus 238 ~~~~~G~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 238 DVDGFGFEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred EeccCCHHH-HHHHHHHHHHHhCcc
Confidence 777788543 446899999998865
No 75
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=28.99 E-value=1.3e+02 Score=27.37 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGA 303 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgv 303 (419)
..++.++++++||+|.++.. .|+..++-.=..-+.+||+
T Consensus 75 Ig~l~~lae~~g~~v~i~~G---gt~ar~~ik~~~p~~iigV 113 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATG---GTLARKIIKEYRPKAIIGV 113 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcC---hHHHHHHHHHhCCCEEEEE
Confidence 56899999999999988754 5666555445555566654
No 76
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.99 E-value=1.1e+02 Score=30.45 Aligned_cols=71 Identities=17% Similarity=0.352 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|... =-.-+..+|.+.|..|.+.... +.++. +...+|||+|..-| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~~----VGkPla~lL~~~~AtVt~chs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (278)
T PRK14172 158 GKEVVVIGRSNI----VGKPVAQLLLNENATVTICHSK-TKNLK---EVCKKADILVVAIGRPKFIDEEYVKEGAIVIDV 229 (278)
T ss_pred CCEEEEECCCcc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEe
Confidence 347899999864 1113566777789999887542 23443 45789999999877 566666778999999987
No 77
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.98 E-value=1.1e+02 Score=30.80 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEEe
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQVV 324 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI~ 324 (419)
-++++|.|.+. + -.=+..+|.+.|..|.++... +.+++ +..++|||+|..-| +++-..=|.+||++||-+
T Consensus 159 k~vvVIGrS~i---V-GkPla~lL~~~~atVtv~hs~-T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv- 229 (297)
T PRK14186 159 KKAVVVGRSIL---V-GKPLALMLLAANATVTIAHSR-TQDLA---SITREADILVAAAGRPNLIGAEMVKPGAVVVDV- 229 (297)
T ss_pred CEEEEECCCcc---c-hHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe-
Confidence 47899999864 1 113566777789999887543 23443 46789999999877 455555689999999987
Q ss_pred eCCCcc
Q 036415 325 PLGLEW 330 (419)
Q Consensus 325 P~g~~~ 330 (419)
|+++
T Consensus 230 --Gin~ 233 (297)
T PRK14186 230 --GIHR 233 (297)
T ss_pred --cccc
Confidence 6543
No 78
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=28.38 E-value=34 Score=31.29 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=44.0
Q ss_pred cCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCC
Q 036415 253 RKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 253 R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pg 317 (419)
|+++|.|.=-+-+-+.|++.|+...--+-.....++||+.-+.+|.+=++..|.+-++....++-
T Consensus 20 rt~sr~I~lG~S~~~flr~lG~~~tGG~~g~~~~lreQ~~rL~~~~i~~~~~~~~~~~~~~~~~~ 84 (161)
T PF04796_consen 20 RTKSREIELGRSLSEFLRRLGLSPTGGRRGTITRLREQMERLFACRITIGFNDGGSAATVNFQIV 84 (161)
T ss_pred ccCCceEeeccCHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHhheEEEEECCCCcccccccccc
Confidence 44445554444577888888987621110112579999999999999999999877666655543
No 79
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.33 E-value=1.2e+02 Score=30.25 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=51.3
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|.+.|..|.+.... +..++ ...++|||+|+.-| +++-..=|.+||++||-+
T Consensus 157 Gk~vvViGrS~i----VGkPla~lL~~~~AtVtichs~-T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDv 228 (282)
T PRK14182 157 GKRALVVGRSNI----VGKPMAMMLLERHATVTIAHSR-TADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVVIDV 228 (282)
T ss_pred CCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEe
Confidence 347899999864 1113566777778888887543 23444 46789999998887 566667788999999987
No 80
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=28.15 E-value=90 Score=28.63 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHhcCCEEEEecchh----hhhhhccCCCcEEEEEe
Q 036415 292 ALVNSCSVLVGAHGAG----LTNQVFLPDGAVMVQVV 324 (419)
Q Consensus 292 ~l~~~advlVgvHGAg----Ltn~lFm~pgs~vIEI~ 324 (419)
+.+..+|++|..-|.- .-++--|++|+.|.-+=
T Consensus 74 ~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~G 110 (162)
T PF00670_consen 74 EALRDADIFVTATGNKDVITGEHFRQMKDGAILANAG 110 (162)
T ss_dssp HHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESS
T ss_pred HHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccC
Confidence 3678999999999963 34566699999998663
No 81
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.11 E-value=1.6e+02 Score=31.81 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCCcEEEEEEcC--CCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe-cchhhhhhhccCC--C
Q 036415 243 REKPILILISRK--KSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGA-HGAGLTNQVFLPD--G 317 (419)
Q Consensus 243 ~~~pr~~~i~R~--~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgv-HGAgLtn~lFm~p--g 317 (419)
..++++=||.-. +.+.--|..||.++|++.|.+|..+-+.. .+++|. +-+.+|++=|.+ +-+|+.-+=+|.. |
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g-~sl~di-~~~~~A~~NIvl~~~~g~~~A~~Le~~fg 238 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEG-GSVEDL-KNLPKAWFNIVPYREVGLMTAKYLEKEFG 238 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCC-CCHHHH-HhcccCcEEEEechhhhHHHHHHHHHHhC
Confidence 355677777655 23666788999999999999998665543 677655 568888888877 3356555555554 6
Q ss_pred cEEEEEeeCCCccccCcchhhHHhhcCCe
Q 036415 318 AVMVQVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 318 s~vIEI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
.-.+...|.|+. ....+-+.+|+.+|+.
T Consensus 239 iP~i~~~PiGi~-~T~~fLr~la~~lg~~ 266 (513)
T CHL00076 239 MPYISTTPMGIV-DTAECIRQIQKILNKL 266 (513)
T ss_pred CCeEeeccCCHH-HHHHHHHHHHHHhCCC
Confidence 666777899953 2456788999988864
No 82
>PRK08618 ornithine cyclodeaminase; Validated
Probab=27.99 E-value=96 Score=31.17 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhh--hccCCCcEEEEE
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEE-LGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQ--VFLPDGAVMVQV 323 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~-~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~--lFm~pgs~vIEI 323 (419)
++.+++|...| -+++.+.+++ +|.++... .+.++ .+.++||||..-+++ .-. -+++||+.|+-|
T Consensus 154 ~v~v~~r~~~~----a~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~aDiVi~aT~s~-~p~i~~~l~~G~hV~~i 220 (325)
T PRK08618 154 RVRVYSRTFEK----AYAFAQEIQSKFNTEIYVV-----NSADE---AIEEADIIVTVTNAK-TPVFSEKLKKGVHINAV 220 (325)
T ss_pred EEEEECCCHHH----HHHHHHHHHHhcCCcEEEe-----CCHHH---HHhcCCEEEEccCCC-CcchHHhcCCCcEEEec
Confidence 56777776433 3556655554 57776553 23333 458999999988877 222 478999998766
No 83
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.92 E-value=2.4e+02 Score=27.62 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHhcCCEEEEecchhhhh--------hhccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 292 ALVNSCSVLVGAHGAGLTN--------QVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 292 ~l~~~advlVgvHGAgLtn--------~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
+.+..+|++|..-.+|+-. .-++++++.|++++-.. ..+.+-..|+..|++.
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~ 240 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP----LPTPFLAWAKAQGART 240 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC----CCCHHHHHHHHCcCee
Confidence 4568899999999999843 13468889999996322 3467888899999865
No 84
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=27.75 E-value=2.2e+02 Score=27.35 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhc------CC---EEEEecchhhhhhhccCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNS------CS---VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~------ad---vlVgvHGAgLtn~lFm~pg 317 (419)
..+.|.+.++++||+|.+...-....+.+.++-+.. .| +++.-||- .|.++...|
T Consensus 31 D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~--~~~l~~~D~ 94 (241)
T smart00115 31 DAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE--EGGIYGTDH 94 (241)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC--CCeEEEecC
Confidence 456778888999999998654222334445544443 33 34456773 477776655
No 85
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=27.69 E-value=1.7e+02 Score=28.83 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHhcCCEEEEecchhhhh-------hhccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 292 ALVNSCSVLVGAHGAGLTN-------QVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 292 ~l~~~advlVgvHGAgLtn-------~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
+.+.++|++|..--+|+.. .-+++++..|+.++-.- ..+.|-..|+..|++.
T Consensus 188 ~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~ 246 (284)
T PRK12549 188 AALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFP----LETELLRAARALGCRT 246 (284)
T ss_pred hhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCC----CCCHHHHHHHHCCCeE
Confidence 3568899998887666532 23477888888886321 3467888888888764
No 86
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.53 E-value=1.8e+02 Score=29.10 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=53.3
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEEe
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQVV 324 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI~ 324 (419)
-++++|.|.+. + -.=+..+|.+.|..|.+.... +.+++ +..++|||+|..-| +++-..=|.+||++||-+
T Consensus 157 k~vvViGrS~i---V-GkPla~lL~~~~atVtichs~-T~~l~---~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDv- 227 (282)
T PRK14169 157 KRVVIVGRSNI---V-GRPLAGLMVNHDATVTIAHSK-TRNLK---QLTKEADILVVAVGVPHFIGADAVKPGAVVIDV- 227 (282)
T ss_pred CEEEEECCCcc---c-hHHHHHHHHHCCCEEEEECCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCcEEEEe-
Confidence 47899999864 1 113566777779999887432 23443 46889999998877 577777789999999987
Q ss_pred eCCCcc
Q 036415 325 PLGLEW 330 (419)
Q Consensus 325 P~g~~~ 330 (419)
|+++
T Consensus 228 --Gin~ 231 (282)
T PRK14169 228 --GISR 231 (282)
T ss_pred --eccc
Confidence 6543
No 87
>PLN02204 diacylglycerol kinase
Probab=27.35 E-value=3e+02 Score=30.52 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=41.7
Q ss_pred EEEEEEcCC-C-CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH-----HhcCCEEEEecchhhhhhhc
Q 036415 247 ILILISRKK-S-RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAAL-----VNSCSVLVGAHGAGLTNQVF 313 (419)
Q Consensus 247 r~~~i~R~~-~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l-----~~~advlVgvHGAgLtn~lF 313 (419)
-++||+-.. . |...+.+++...+++.|+++.++..+..-...+.++. ....|.||++=|-|+.|-+.
T Consensus 162 llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 162 LLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred EEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 355666542 2 4455666888999888877555444322233333221 46789999999999877554
No 88
>PRK06932 glycerate dehydrogenase; Provisional
Probab=26.97 E-value=95 Score=31.21 Aligned_cols=60 Identities=13% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCEEEEEcCCCC----CCHHHHHHHHhcCCEEEEe-----cchhhhhh---hccCCCcEEEEE
Q 036415 264 EIVVMMEELGFEVVVTRPNRM----SNLNKFAALVNSCSVLVGA-----HGAGLTNQ---VFLPDGAVMVQV 323 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~----~s~~eq~~l~~~advlVgv-----HGAgLtn~---lFm~pgs~vIEI 323 (419)
++++.++.+|++|+..+.... ....+.-+++..||+|+-- .--||-|. --|+||+++|-+
T Consensus 161 ~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~ 232 (314)
T PRK06932 161 EVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINT 232 (314)
T ss_pred HHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEEC
Confidence 577888889999988764210 1122345788999998832 22233322 238999999966
No 89
>PRK06823 ornithine cyclodeaminase; Validated
Probab=26.54 E-value=88 Score=31.55 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=43.5
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhh--hhhhccCCCcEEEEE
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGL--TNQVFLPDGAVMVQV 323 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgL--tn~lFm~pgs~vIEI 323 (419)
++.+.+|... +.+++.+.+++.|+++...+. . -+.+..||||+..-+|.= -..=|++||+.|+-|
T Consensus 155 ~v~v~~r~~~----~a~~~~~~~~~~~~~v~~~~~-----~---~~av~~ADIV~taT~s~~P~~~~~~l~~G~hi~~i 221 (315)
T PRK06823 155 QLWVWGRSET----ALEEYRQYAQALGFAVNTTLD-----A---AEVAHAANLIVTTTPSREPLLQAEDIQPGTHITAV 221 (315)
T ss_pred EEEEECCCHH----HHHHHHHHHHhcCCcEEEECC-----H---HHHhcCCCEEEEecCCCCceeCHHHcCCCcEEEec
Confidence 5666676643 334566666667888876532 2 246799999999987652 223378999998866
No 90
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=26.34 E-value=1e+02 Score=32.23 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=59.9
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec--chhhhhhhccCCCcEEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH--GAGLTNQVFLPDGAVMV 321 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH--GAgLtn~lFm~pgs~vI 321 (419)
.+.++.++.--. ..+..|+.++|++.|+++..+=++ .++.|. ..+..+..++..+ +...+..| -+-|...+
T Consensus 165 ~~~~VniiG~~~---~~d~~el~~lL~~~Gi~v~~~lp~--~~~~d~-~~~~~~~~~~~~~~~~~~~A~~L-~~~GiP~~ 237 (427)
T PRK02842 165 DHPSLVLVGSLA---DVVEDQLTLEFKKLGIGVVGFLPA--RRFTEL-PAIGPGTVVALAQPFLSDTARAL-RERGAKVL 237 (427)
T ss_pred CCCcEEEEEeCC---cchHHHHHHHHHHcCCeeEEEeCC--ccHHHH-hhcCcCcEEEEeCHHHHHHHHHH-HHcCCccc
Confidence 344566665433 355689999999999998633343 455544 4444444444444 44556666 56676666
Q ss_pred EE-eeCCCccccCcchhhHHhhcCCe
Q 036415 322 QV-VPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 322 EI-~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
.. +|+|++- ...+++.+|+..|+.
T Consensus 238 ~~~~P~G~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 238 TAPFPLGPEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred cCCCCcChHH-HHHHHHHHHHHhCcC
Confidence 55 7888643 456889999888864
No 91
>PLN02928 oxidoreductase family protein
Probab=26.28 E-value=1.3e+02 Score=30.63 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC---------------------CCHHHHHHHHhcCCEEEEecc-----hhhhhhhc---
Q 036415 263 NEIVVMMEELGFEVVVTRPNRM---------------------SNLNKFAALVNSCSVLVGAHG-----AGLTNQVF--- 313 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~---------------------~s~~eq~~l~~~advlVgvHG-----AgLtn~lF--- 313 (419)
.++++.|+.+|++|+..+.... .+..+.-+++++||+|+-.-- -+|.|.=+
T Consensus 172 ~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~ 251 (347)
T PLN02928 172 IELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSS 251 (347)
T ss_pred HHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhc
Q ss_pred cCCCcEEE
Q 036415 314 LPDGAVMV 321 (419)
Q Consensus 314 m~pgs~vI 321 (419)
|+||+.+|
T Consensus 252 Mk~ga~lI 259 (347)
T PLN02928 252 MKKGALLV 259 (347)
T ss_pred CCCCeEEE
No 92
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.16 E-value=1.4e+02 Score=28.00 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=41.1
Q ss_pred CCCcEEEEEEcCCCCcccCHHHHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecch
Q 036415 243 REKPILILISRKKSRVVSNENEIVVMMEEL-GFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGA 306 (419)
Q Consensus 243 ~~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~-gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGA 306 (419)
..++|++||.-...-.=.-.+.+.++++++ |+++..+.. .+-++..+.+.+||+|+=.=|.
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~---~~~~~~~~~l~~ad~I~l~GG~ 90 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHL---FDTEDPLDALLEADVIYVGGGN 90 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEec---cCcccHHHHHhcCCEEEECCch
Confidence 357899999987651112233456777889 999988754 2233446788999998866553
No 93
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=26.11 E-value=1.6e+02 Score=31.84 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=62.8
Q ss_pred CCCcccCHHHHHHHHHHcCCEEEEEcCC-CCCCHHH-H-----------HHHHhcCCEEEEecchhhhhhhccCCCcEEE
Q 036415 255 KSRVVSNENEIVVMMEELGFEVVVTRPN-RMSNLNK-F-----------AALVNSCSVLVGAHGAGLTNQVFLPDGAVMV 321 (419)
Q Consensus 255 ~~R~i~Ne~ev~~~l~~~gf~v~~~e~~-~~~s~~e-q-----------~~l~~~advlVgvHGAgLtn~lFm~pgs~vI 321 (419)
+.||+.=..+.++.|.+.||+|.+-... ....|.+ . .+++ +||+++.+.--.....=+|++|.++|
T Consensus 12 ~E~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~P~~~e~~~l~~g~~li 90 (509)
T PRK09424 12 GETRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNAPSDDEIALLREGATLV 90 (509)
T ss_pred CCeEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCCCCHHHHHhcCCCCEEE
Confidence 3477776777788888899998874431 2233321 1 1345 79999999999888888999999999
Q ss_pred EEeeCCCccccCcchhhHHhhcCCeEEEEEeec
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQYLEYKIEP 354 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~Y~~y~~~~ 354 (419)
-++-+.. .. ..-+.....|+..+.|..-+
T Consensus 91 ~~l~p~~---~~-~l~~~l~~~~it~ia~e~vp 119 (509)
T PRK09424 91 SFIWPAQ---NP-ELLEKLAARGVTVLAMDAVP 119 (509)
T ss_pred EEeCccc---CH-HHHHHHHHcCCEEEEeeccc
Confidence 8764431 22 22233345688888876533
No 94
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.77 E-value=1.8e+02 Score=25.16 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=35.2
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHH----HcCCEEEEEcCCCC----------------CCHHHHHHHHhcCCEEEE
Q 036415 247 ILILISRKKSRVVSNENEIVVMME----ELGFEVVVTRPNRM----------------SNLNKFAALVNSCSVLVG 302 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~----~~gf~v~~~e~~~~----------------~s~~eq~~l~~~advlVg 302 (419)
|+++|.=. .|+=-|-..+++.+. +.|.++.+++..+. -.+.+-++.+.+||.+|=
T Consensus 2 kilii~gS-~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~ 76 (152)
T PF03358_consen 2 KILIINGS-PRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF 76 (152)
T ss_dssp EEEEEESS-SSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECc-CCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEE
Confidence 45566421 255566666655544 45899988877641 235566889999998874
No 95
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=25.71 E-value=56 Score=29.94 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=43.7
Q ss_pred HHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCC-cEEEEEeeCC-CccccCcchhhHH
Q 036415 264 EIVVMMEEL-GFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDG-AVMVQVVPLG-LEWASTNYYGAPT 340 (419)
Q Consensus 264 ev~~~l~~~-gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pg-s~vIEI~P~g-~~~~~~~~y~~lA 340 (419)
++.+.+++. .=+.+.......+++.+.++-+..-+=+||+|- |.||. ..++||+|.. ........-..++
T Consensus 95 ~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf-------~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~ 167 (180)
T PF02737_consen 95 ELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHF-------FNPPHLMPLVEVVPGPKTSPETVDRVRALL 167 (180)
T ss_dssp HHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE--------SSTTT--EEEEEE-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEec-------ccccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 455666654 344444444455999999999988889999993 55776 7999999986 3222222334455
Q ss_pred hhcCCe
Q 036415 341 KEMGVQ 346 (419)
Q Consensus 341 ~~~gl~ 346 (419)
+.+|..
T Consensus 168 ~~~gk~ 173 (180)
T PF02737_consen 168 RSLGKT 173 (180)
T ss_dssp HHTT-E
T ss_pred HHCCCE
Confidence 566643
No 96
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.67 E-value=1.2e+02 Score=30.37 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|.+.|..|.++... +- +.-+...+||++|..-| +++-..=|.+||++||.+
T Consensus 159 Gk~vvViGrs~i----VG~Pla~lL~~~~atVtv~hs~-T~---~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDv 230 (285)
T PRK10792 159 GLNAVVVGASNI----VGRPMSLELLLAGCTVTVCHRF-TK---NLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDV 230 (285)
T ss_pred CCEEEEECCCcc----cHHHHHHHHHHCCCeEEEEECC-CC---CHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEc
Confidence 347889998753 1124566777789999887532 12 33446899999999887 566666778999999988
No 97
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=25.65 E-value=80 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCCCccccCcchhh--HHhhcCCeEEEE
Q 036415 287 LNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYYGA--PTKEMGVQYLEY 350 (419)
Q Consensus 287 ~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g~~~~~~~~y~~--lA~~~gl~Y~~y 350 (419)
+++.++.-.++|++|++---|=||++|.++- -+.+ .+ ..-+++.. .|+.+|+.+..|
T Consensus 104 i~~~~~~~~d~dvviaP~~gGGTn~L~~r~~--~~~~---~y--~g~SF~~Hl~~Ark~G~~~~~~ 162 (210)
T COG1920 104 IERALSAAKDADVVIAPGRGGGTNVLFARKS--AFRP---RY--GGVSFLRHLEEARKRGLVVLTY 162 (210)
T ss_pred HHHHHHhcCCCcEEEecCCCCceEEEEEecc--cccc---cc--cCccHHHHHHHHHHcCCEEEEe
Confidence 6677888888999999999999999999993 2322 21 12234444 678999999877
No 98
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.52 E-value=1.4e+02 Score=29.93 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=52.2
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. + -.=+..+|.+.|..|.+.... +.++ ....++|||+|..-| +++-..=|.+||++||-+
T Consensus 155 Gk~vvViGrS~i---V-GkPla~lL~~~~aTVtichs~-T~~l---~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDV 226 (287)
T PRK14173 155 GKEVVVVGRSNI---V-GKPLAALLLREDATVTLAHSK-TQDL---PAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDV 226 (287)
T ss_pred CCEEEEECCCCc---c-HHHHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEc
Confidence 347899999864 1 113456666778898887442 2334 356789999999887 456666678999999987
Q ss_pred eeCCCcc
Q 036415 324 VPLGLEW 330 (419)
Q Consensus 324 ~P~g~~~ 330 (419)
|+++
T Consensus 227 ---Gin~ 230 (287)
T PRK14173 227 ---GINR 230 (287)
T ss_pred ---cCcc
Confidence 6543
No 99
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.52 E-value=2e+02 Score=28.88 Aligned_cols=73 Identities=14% Similarity=0.312 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEEee
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQVVP 325 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI~P 325 (419)
++++|.|.+. --.-+..+|.+.|..|.+.... +.++. +...+|||+|..-| +++-..=|.+||++||-+
T Consensus 161 ~vvViGrS~i----VGkPla~lL~~~~ATVtichs~-T~~L~---~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDv-- 230 (288)
T PRK14171 161 NVVIIGRSNI----VGKPLSALLLKENCSVTICHSK-THNLS---SITSKADIVVAAIGSPLKLTAEYFNPESIVIDV-- 230 (288)
T ss_pred EEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCCCccCHHHcCCCCEEEEe--
Confidence 7899998864 1123566777779999887542 24443 46789999999887 456666788999999987
Q ss_pred CCCcc
Q 036415 326 LGLEW 330 (419)
Q Consensus 326 ~g~~~ 330 (419)
|+++
T Consensus 231 -Gin~ 234 (288)
T PRK14171 231 -GINR 234 (288)
T ss_pred -eccc
Confidence 6543
No 100
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=25.37 E-value=2.1e+02 Score=30.96 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC----------C--C-HHHHHHHH----hcCCEEEEecch-------hhhhhhc--cCC
Q 036415 263 NEIVVMMEELGFEVVVTRPNRM----------S--N-LNKFAALV----NSCSVLVGAHGA-------GLTNQVF--LPD 316 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~----------~--s-~~eq~~l~----~~advlVgvHGA-------gLtn~lF--m~p 316 (419)
++-.+.++++|.+.+.++..+. + . .+.|.+++ ..+|++|...|. .++...+ |+|
T Consensus 198 ~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkp 277 (509)
T PRK09424 198 PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKP 277 (509)
T ss_pred HHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCC
Confidence 3556778889988655543211 1 1 22334443 469999999996 2245555 999
Q ss_pred CcEEEEEe
Q 036415 317 GAVMVQVV 324 (419)
Q Consensus 317 gs~vIEI~ 324 (419)
|++++.+-
T Consensus 278 GgvIVdvg 285 (509)
T PRK09424 278 GSVIVDLA 285 (509)
T ss_pred CCEEEEEc
Confidence 99999884
No 101
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.31 E-value=90 Score=32.60 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=67.1
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCC-----------------CCCCHHHHHHHHhcCCEEEEecc-
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPN-----------------RMSNLNKFAALVNSCSVLVGAHG- 305 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~-----------------~~~s~~eq~~l~~~advlVgvHG- 305 (419)
.+.++-+|.-... .-.|.+|+.++|+++|+++..+-+. ...++ |+++-+.+|.+-|.++-
T Consensus 154 ~~~~VNlig~~~~-~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~-e~i~~~~~A~lniv~~~~ 231 (428)
T cd01965 154 KNGKVNLLPGFPL-TPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTL-EEIRDAGNAKATIALGEY 231 (428)
T ss_pred CCCeEEEECCCCC-CccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcH-HHHHHhccCcEEEEEChh
Confidence 4456666653221 1228899999999999999876321 12455 45567888888888877
Q ss_pred hhhhhhhccC--CCcEEEEEe-eCCCccccCcchhhHHhhcCCe
Q 036415 306 AGLTNQVFLP--DGAVMVQVV-PLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 306 AgLtn~lFm~--pgs~vIEI~-P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
+|..-.-+|. -|.-.+..- |+|++- ...+++.+|+..|..
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G~~~-t~~~l~~l~~~~g~~ 274 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIGLKA-TDEFLRALSKLSGKP 274 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcChHH-HHHHHHHHHHHHCCC
Confidence 7766666655 466667665 888542 446888888888864
No 102
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.07 E-value=1.8e+02 Score=30.11 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|.+.|..|.++... +-++. +...+|||+|..-| +++-..=|.+||++||-+
T Consensus 231 GK~vvVIGRS~i----VGkPLa~LL~~~~ATVTicHs~-T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDV 302 (364)
T PLN02616 231 GKRAVVIGRSNI----VGMPAALLLQREDATVSIVHSR-TKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVVIDV 302 (364)
T ss_pred CCEEEEECCCcc----ccHHHHHHHHHCCCeEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEec
Confidence 347889999864 1113566777788899887543 24444 45799999998877 567777789999999987
Q ss_pred eeCCCcc
Q 036415 324 VPLGLEW 330 (419)
Q Consensus 324 ~P~g~~~ 330 (419)
|+++
T Consensus 303 ---GIn~ 306 (364)
T PLN02616 303 ---GINP 306 (364)
T ss_pred ---cccc
Confidence 6543
No 103
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=25.06 E-value=45 Score=28.96 Aligned_cols=70 Identities=14% Similarity=0.382 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhh--hhccCCC----c
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEEL-GFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTN--QVFLPDG----A 318 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~-gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn--~lFm~pg----s 318 (419)
.++.+++|+. +...++++++ +..+.... +.+..+...++|++|..-++|+.. --.+.+. .
T Consensus 37 ~~i~i~nRt~-------~ra~~l~~~~~~~~~~~~~------~~~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~ 103 (135)
T PF01488_consen 37 KEITIVNRTP-------ERAEALAEEFGGVNIEAIP------LEDLEEALQEADIVINATPSGMPIITEEMLKKASKKLR 103 (135)
T ss_dssp SEEEEEESSH-------HHHHHHHHHHTGCSEEEEE------GGGHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCHHCS
T ss_pred CEEEEEECCH-------HHHHHHHHHcCccccceee------HHHHHHHHhhCCeEEEecCCCCcccCHHHHHHHHhhhh
Confidence 3688899853 3333444444 33333322 234447899999999999999652 1233343 4
Q ss_pred EEEEE-eeCCC
Q 036415 319 VMVQV-VPLGL 328 (419)
Q Consensus 319 ~vIEI-~P~g~ 328 (419)
.++.+ +|..+
T Consensus 104 ~v~Dla~Pr~i 114 (135)
T PF01488_consen 104 LVIDLAVPRDI 114 (135)
T ss_dssp EEEES-SS-SB
T ss_pred ceeccccCCCC
Confidence 88888 66664
No 104
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.06 E-value=1.2e+02 Score=32.03 Aligned_cols=96 Identities=14% Similarity=0.204 Sum_probs=64.0
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecch-h--hhhhhccCCCcEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGA-G--LTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGA-g--Ltn~lFm~pgs~vI 321 (419)
+.++-+|.= ....-|.+|+.++|+++|++++..-+. ..+++|. +-+.+|..-|.+.+. + ++..|==+=|.-.+
T Consensus 191 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~~-~~t~eei-~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~ 266 (443)
T TIGR01862 191 EYDVNIIGE--YNIGGDAWVMRIYLEEMGIQVVATFTG-DGTYDEI-RLMHKAKLNLVHCARSANYIANELEERYGIPWM 266 (443)
T ss_pred CCeEEEEcc--CcCcccHHHHHHHHHHcCCeEEEEECC-CCCHHHH-HhcccCCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 455666652 233568889999999999999764343 2666555 567887777765542 2 34444334477777
Q ss_pred EEeeCCCccccCcchhhHHhhcCC
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGV 345 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl 345 (419)
.+-|.|++- ...++..+|+..|+
T Consensus 267 ~~~p~G~~~-t~~~l~~la~~~gi 289 (443)
T TIGR01862 267 KIDFFGFTY-TAESLRAIAAFFGI 289 (443)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCC
Confidence 777888643 44688999988885
No 105
>PRK07589 ornithine cyclodeaminase; Validated
Probab=25.05 E-value=1e+02 Score=31.66 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=44.0
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh----hhhhhccCCCcEEEE
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG----LTNQVFLPDGAVMVQ 322 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg----Ltn~lFm~pgs~vIE 322 (419)
++.+.+|. ..+.+++.+.+++.|+++...+ +.+ +.+.+||||+..-.+. +-..=|++||+.|.-
T Consensus 156 ~V~v~~r~----~~~a~~~~~~~~~~~~~v~~~~-----~~~---~av~~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~a 223 (346)
T PRK07589 156 EIRLYDID----PAATAKLARNLAGPGLRIVACR-----SVA---EAVEGADIITTVTADKTNATILTDDMVEPGMHINA 223 (346)
T ss_pred EEEEEeCC----HHHHHHHHHHHHhcCCcEEEeC-----CHH---HHHhcCCEEEEecCCCCCCceecHHHcCCCcEEEe
Confidence 45566655 3455666767776788877643 222 4679999999998753 234457899998776
Q ss_pred E
Q 036415 323 V 323 (419)
Q Consensus 323 I 323 (419)
|
T Consensus 224 I 224 (346)
T PRK07589 224 V 224 (346)
T ss_pred c
Confidence 5
No 106
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.98 E-value=3.1e+02 Score=26.11 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHc----CCEEEEEcCC----------------CCCCHHHHHHHHhcCCEEEEe
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEEL----GFEVVVTRPN----------------RMSNLNKFAALVNSCSVLVGA 303 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~----gf~v~~~e~~----------------~~~s~~eq~~l~~~advlVgv 303 (419)
.++.++++.|-+. -.|.+.+++++++. .++++++... ...+..+..+++++||++|.+
T Consensus 196 ~~~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~ 273 (364)
T cd03814 196 DRPVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFP 273 (364)
T ss_pred CCeEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 4567888988654 23556666666553 3444443211 013667788899999998876
Q ss_pred cc
Q 036415 304 HG 305 (419)
Q Consensus 304 HG 305 (419)
.+
T Consensus 274 s~ 275 (364)
T cd03814 274 SR 275 (364)
T ss_pred cc
Confidence 54
No 107
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.93 E-value=1.3e+02 Score=30.05 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|...|..|.++.... -. ..+...+||++|..-| +++-..=|.+||++||.+
T Consensus 164 Gk~vvViGrs~i----VGkPla~lL~~~~atVtv~hs~T-~~---l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDv 235 (287)
T PRK14176 164 GKNAVIVGHSNV----VGKPMAAMLLNRNATVSVCHVFT-DD---LKKYTLDADILVVATGVKHLIKADMVKEGAVIFDV 235 (287)
T ss_pred CCEEEEECCCcc----cHHHHHHHHHHCCCEEEEEeccC-CC---HHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEe
Confidence 347889998753 11245677777899998875421 33 3446899999997544 556666689999999988
No 108
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=24.87 E-value=1.1e+02 Score=32.32 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=63.9
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-h--hhhhhhccCCCcEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-A--GLTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-A--gLtn~lFm~pgs~vI 321 (419)
+..+-+|.-.. ..-+..|+.++|+++|+++...-+.. .+++| ++-+.+|.+-|.+.+ + .++..|==+=|.-.+
T Consensus 197 ~~~VNiiG~~~--~~~d~~el~~lL~~~Gl~v~~~~~~~-~s~ee-i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~ 272 (456)
T TIGR01283 197 VHDINLIGEFN--VAGEFWHVKPLLEKLGIRVLATITGD-SRYAE-VQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYF 272 (456)
T ss_pred CCcEEEEcCCC--CcccHHHHHHHHHHcCCeEEEEeCCC-CcHHH-HHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEE
Confidence 45566776332 23466799999999999998654442 66754 567788888776543 2 344444334477777
Q ss_pred EEeeCCCccccCcchhhHHhhcCC
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGV 345 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl 345 (419)
+..|+|++. ...+++.+|+.+|.
T Consensus 273 ~~~~~G~~~-T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 273 EGSFYGIED-TSKALRDIADLFGD 295 (456)
T ss_pred ecCCCcHHH-HHHHHHHHHHHhCC
Confidence 777888653 44688899988884
No 109
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.78 E-value=1.5e+02 Score=29.65 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|... =-.=+..+|.+.|..|.++... +.+ ..+...+|||+|..-| +++-..=|.+||++||-+
T Consensus 157 Gk~vvVvGrS~i----VGkPla~lL~~~~atVt~chs~-T~n---l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDv 228 (282)
T PRK14166 157 GKDAVIIGASNI----VGRPMATMLLNAGATVSVCHIK-TKD---LSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDV 228 (282)
T ss_pred CCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCC---HHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 347889999864 1113556677779999887432 233 3346899999998887 567777789999999987
Q ss_pred eeCCCcc
Q 036415 324 VPLGLEW 330 (419)
Q Consensus 324 ~P~g~~~ 330 (419)
|+++
T Consensus 229 ---Gin~ 232 (282)
T PRK14166 229 ---GINR 232 (282)
T ss_pred ---cccc
Confidence 6544
No 110
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=24.78 E-value=1.5e+02 Score=30.88 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCEEEEEcCCC-----CCCHHHHHHHHhcCCEEE--Eecch-------hhhh---hhccCCCcEEEEE
Q 036415 264 EIVVMMEELGFEVVVTRPNR-----MSNLNKFAALVNSCSVLV--GAHGA-------GLTN---QVFLPDGAVMVQV 323 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~-----~~s~~eq~~l~~~advlV--gvHGA-------gLtn---~lFm~pgs~vIEI 323 (419)
.+++.|+.+|++|...++.. ...+...-+++.+||||+ .+.-. +|.| +==|+||+.+|-.
T Consensus 130 ~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 130 RLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred HHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 47788889999999887521 112333446788999999 33211 2332 2237899998865
No 111
>PRK05568 flavodoxin; Provisional
Probab=24.62 E-value=1.5e+02 Score=25.43 Aligned_cols=50 Identities=22% Similarity=0.207 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCC-CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 036415 245 KPILILISRKKS-RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLV 301 (419)
Q Consensus 245 ~pr~~~i~R~~~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlV 301 (419)
+.-++|.|..++ +++.+ .+.+.+++.|.++.+.+... .... .+.++|.+|
T Consensus 3 ~~~IvY~S~~GnT~~~a~--~i~~~~~~~g~~v~~~~~~~-~~~~----~~~~~d~ii 53 (142)
T PRK05568 3 KINIIYWSGTGNTEAMAN--LIAEGAKENGAEVKLLNVSE-ASVD----DVKGADVVA 53 (142)
T ss_pred eEEEEEECCCchHHHHHH--HHHHHHHHCCCeEEEEECCC-CCHH----HHHhCCEEE
Confidence 346788998876 66663 56677777899988877654 4443 356777765
No 112
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=24.50 E-value=2.3e+02 Score=30.81 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=61.7
Q ss_pred CCCcccCHHHHHHHHHHcCCEEEEEcCC-CCCCHHH-HH----------HHHhcCCEEEEecchhhhhhhccCCCcEEEE
Q 036415 255 KSRVVSNENEIVVMMEELGFEVVVTRPN-RMSNLNK-FA----------ALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQ 322 (419)
Q Consensus 255 ~~R~i~Ne~ev~~~l~~~gf~v~~~e~~-~~~s~~e-q~----------~l~~~advlVgvHGAgLtn~lFm~pgs~vIE 322 (419)
+.||+.=..+.++.|.+.||+|.+-... ....|.+ .+ ..+..||+++.+.--...-.=+|++|.++|-
T Consensus 11 ~E~RVAltP~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~P~~~e~~~l~~g~tli~ 90 (511)
T TIGR00561 11 NECRVAATPKTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNAPSDAEIAELPAGKALVS 90 (511)
T ss_pred CCeeeccCHHHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCCCCHHHHHhcCCCCEEEE
Confidence 3477777778888888999998764431 2233322 11 1234689999998888777888999999997
Q ss_pred EeeCCCccccCcchhhHHhhcCCeEEEEEe
Q 036415 323 VVPLGLEWASTNYYGAPTKEMGVQYLEYKI 352 (419)
Q Consensus 323 I~P~g~~~~~~~~y~~lA~~~gl~Y~~y~~ 352 (419)
++-+.- . ...-+.....|+..+.|..
T Consensus 91 ~l~p~~---n-~~ll~~l~~k~it~ia~E~ 116 (511)
T TIGR00561 91 FIWPAQ---N-PELMEKLAAKNITVLAMDA 116 (511)
T ss_pred EcCccC---C-HHHHHHHHHcCCEEEEeec
Confidence 764431 2 2222333456788888863
No 113
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.49 E-value=1.3e+02 Score=31.39 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=65.0
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh---hhhhhccCCCcEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG---LTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg---Ltn~lFm~pgs~vI 321 (419)
+..+-+|.= ...--|..|+.++|+++|.++...-+. +.+++|. +-+.+|..-|.+...+ ++..|==+=|.-.+
T Consensus 172 ~~~VNiiG~--~~~~~d~~el~~lL~~~Gi~v~~~~~~-~~t~eei-~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIGD--YNIGGDAWASRILLEEMGLRVVAQWSG-DGTLNEM-ENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEec--CCCCccHHHHHHHHHHcCCeEEEEeCC-CCCHHHH-HhcccCCEEEEECcHHHHHHHHHHHHHhCCcEE
Confidence 455666652 223457789999999999999854333 3677655 5677788777764332 45555334577777
Q ss_pred EEeeCCCccccCcchhhHHhhcCCe
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
+..|+|++- ...+++.+|+..|..
T Consensus 248 ~~~p~Gi~~-t~~~l~~ia~~~g~~ 271 (421)
T cd01976 248 EYNFFGPTK-IAESLRKIAAYFDDE 271 (421)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCch
Confidence 777888642 456889999888864
No 114
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=23.66 E-value=2.2e+02 Score=28.38 Aligned_cols=88 Identities=20% Similarity=0.345 Sum_probs=57.8
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhh--------hccC
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQ--------VFLP 315 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~--------lFm~ 315 (419)
...++++++|+..| -+++.+.+.+.+..+...+... +..+ . .+|++|-.-..||..- --++
T Consensus 149 g~~~i~V~NRt~~r----a~~La~~~~~~~~~~~~~~~~~---~~~~-~---~~dliINaTp~Gm~~~~~~~~~~~~~l~ 217 (283)
T COG0169 149 GAKRITVVNRTRER----AEELADLFGELGAAVEAAALAD---LEGL-E---EADLLINATPVGMAGPEGDSPVPAELLP 217 (283)
T ss_pred CCCEEEEEeCCHHH----HHHHHHHhhhcccccccccccc---cccc-c---ccCEEEECCCCCCCCCCCCCCCcHHhcC
Confidence 44678888887554 5677777777665333332211 1111 1 8999998888887764 3467
Q ss_pred CCcEEEEEeeCCCccccCcchhhHHhhcCCe
Q 036415 316 DGAVMVQVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 316 pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
+++++.+++ +.+ ..+.|-..|+..|.+
T Consensus 218 ~~~~v~D~v---Y~P-~~TplL~~A~~~G~~ 244 (283)
T COG0169 218 KGAIVYDVV---YNP-LETPLLREARAQGAK 244 (283)
T ss_pred cCCEEEEec---cCC-CCCHHHHHHHHcCCe
Confidence 889999986 222 356788889988877
No 115
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=23.63 E-value=4.4e+02 Score=26.13 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=54.4
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhh---------hhcc
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEE-LGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTN---------QVFL 314 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~-~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn---------~lFm 314 (419)
-.++++++|... ...+.+++.+.+.+ .+..+...+.+. .....+.+.++|+||-..-.||.. .-++
T Consensus 148 ~~~i~i~nRt~~-~~~ka~~la~~~~~~~~~~~~~~~~~~---~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l 223 (288)
T PRK12749 148 LKEIKLFNRRDE-FFDKALAFAQRVNENTDCVVTVTDLAD---QQAFAEALASADILTNGTKVGMKPLENESLVNDISLL 223 (288)
T ss_pred CCEEEEEeCCcc-HHHHHHHHHHHhhhccCceEEEechhh---hhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHC
Confidence 347888888642 11223445444433 233343332211 111122456899999887777743 1246
Q ss_pred CCCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 315 PDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 315 ~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
+++..|++++ +++ ..+.+-..|+..|.+.
T Consensus 224 ~~~~~v~D~v---Y~P-~~T~ll~~A~~~G~~~ 252 (288)
T PRK12749 224 HPGLLVTECV---YNP-HMTKLLQQAQQAGCKT 252 (288)
T ss_pred CCCCEEEEec---CCC-ccCHHHHHHHHCCCeE
Confidence 7888899886 222 3467888899888764
No 116
>PRK06487 glycerate dehydrogenase; Provisional
Probab=23.59 E-value=1.3e+02 Score=30.33 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCEEEEEcCCCC---CCHHHHHHHHhcCCEEEE-----ecchhhhhh---hccCCCcEEEEE
Q 036415 264 EIVVMMEELGFEVVVTRPNRM---SNLNKFAALVNSCSVLVG-----AHGAGLTNQ---VFLPDGAVMVQV 323 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~---~s~~eq~~l~~~advlVg-----vHGAgLtn~---lFm~pgs~vIEI 323 (419)
++++.++.+|++|...+.... ....+.-+++..||+|+- ..--||-|. =-|+||+.+|-+
T Consensus 162 ~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 162 AVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINT 232 (317)
T ss_pred HHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEEC
Confidence 578888889999987764210 111223457899999883 222233332 238999999866
No 117
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.45 E-value=1.6e+02 Score=29.57 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=51.6
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEEL----GFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAV 319 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~----gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~ 319 (419)
.-++++|.|... + -.=+..+|.+. +..|.++... +.+++ +..++|||+|..-| +++-..=|.+||++
T Consensus 153 Gk~vvViGrS~i---V-GkPla~lL~~~~~~~~AtVtvchs~-T~~l~---~~~~~ADIvV~AvG~p~~i~~~~ik~Gav 224 (287)
T PRK14181 153 GRHVAIVGRSNI---V-GKPLAALLMQKHPDTNATVTLLHSQ-SENLT---EILKTADIIIAAIGVPLFIKEEMIAEKAV 224 (287)
T ss_pred CCEEEEECCCcc---c-hHHHHHHHHhCcCCCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence 347899999864 1 11345556555 7888887432 23443 45799999998877 56677778999999
Q ss_pred EEEEeeCCCcc
Q 036415 320 MVQVVPLGLEW 330 (419)
Q Consensus 320 vIEI~P~g~~~ 330 (419)
||-+ |+++
T Consensus 225 VIDv---Gin~ 232 (287)
T PRK14181 225 IVDV---GTSR 232 (287)
T ss_pred EEEe---cccc
Confidence 9987 6543
No 118
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=22.79 E-value=4.7e+02 Score=22.06 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHH---HHhcC-CEEEEecchhhhhhhc---cCCC---cEEEEEeeCCCccc
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNKFAA---LVNSC-SVLVGAHGAGLTNQVF---LPDG---AVMVQVVPLGLEWA 331 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~---l~~~a-dvlVgvHGAgLtn~lF---m~pg---s~vIEI~P~g~~~~ 331 (419)
..++.+.+++.+.++.+.+.+. ....++++ ..... |.+|.+=|-|-.|.+. +..+ ...+=++|.|.
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT--- 92 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES-AGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGT--- 92 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS-TTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SS---
T ss_pred HHHHHHHHHHcCCceEEEEEec-cchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCC---
Confidence 4788899988887766655544 45555554 35555 8999999999877765 2222 34788999993
Q ss_pred cCcchhhHHhhcCC
Q 036415 332 STNYYGAPTKEMGV 345 (419)
Q Consensus 332 ~~~~y~~lA~~~gl 345 (419)
. ..+|+.+|+
T Consensus 93 ~----N~~ar~lg~ 102 (130)
T PF00781_consen 93 G----NDFARSLGI 102 (130)
T ss_dssp S-----HHHHHTT-
T ss_pred h----hHHHHHcCC
Confidence 1 245666664
No 119
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.55 E-value=2.1e+02 Score=25.32 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHH-HHh--cCCEEEEecchhhhhhhcc
Q 036415 259 VSNENEIVVMMEELGFEVVVTR--PNRMSNLNKFAA-LVN--SCSVLVGAHGAGLTNQVFL 314 (419)
Q Consensus 259 i~Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~-l~~--~advlVgvHGAgLtn~lFm 314 (419)
=.|-.-+.+.+++.|+++.... +++.-.+.+.++ ..+ .+|++|..=|+|.+.-=|.
T Consensus 19 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t 79 (152)
T cd00886 19 DRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVT 79 (152)
T ss_pred cchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCc
Confidence 3455567788999999887543 222234445444 344 6999999988887654443
No 120
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.54 E-value=2.3e+02 Score=28.45 Aligned_cols=75 Identities=16% Similarity=0.318 Sum_probs=53.2
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. + -.-+..+|.+.|..|.++... +-++. +...+|||+|..-| +++-..=|.+||++||-+
T Consensus 160 Gk~vvViGrS~i---V-GkPla~lL~~~~aTVt~chs~-T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDV 231 (294)
T PRK14187 160 GSDAVVIGRSNI---V-GKPMACLLLGENCTVTTVHSA-TRDLA---DYCSKADILVAAVGIPNFVKYSWIKKGAIVIDV 231 (294)
T ss_pred CCEEEEECCCcc---c-hHHHHHHHhhCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 347899999864 1 113556677789999887542 23443 46899999999888 456667788999999987
Q ss_pred eeCCCcc
Q 036415 324 VPLGLEW 330 (419)
Q Consensus 324 ~P~g~~~ 330 (419)
|+++
T Consensus 232 ---Gin~ 235 (294)
T PRK14187 232 ---GINS 235 (294)
T ss_pred ---cccc
Confidence 6543
No 121
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=22.48 E-value=1.1e+02 Score=32.66 Aligned_cols=97 Identities=9% Similarity=0.153 Sum_probs=65.2
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc---hhhhhhhccCCCcEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG---AGLTNQVFLPDGAVMV 321 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG---AgLtn~lFm~pgs~vI 321 (419)
+..+-+|. +....-|..|+.++|+++|+++...-+. +.+++|. +-+.+|..-|.+.+ ..++..|-=+=|.-.+
T Consensus 201 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gi~v~~~~~g-~~t~~ei-~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~ 276 (461)
T TIGR01860 201 EYTINVIG--DYNIQGDTQVLQKYWDKMGIQVIAHFTG-NGTYDDL-RCMHRAQLNVVNCARSAGYIANELKKRYGIPRL 276 (461)
T ss_pred CCcEEEEC--CCCCcccHHHHHHHHHHcCCcEEEEeCC-CCCHHHH-HhcccCcEEEEECchHHHHHHHHHHHHhCCCee
Confidence 34566674 2334457789999999999999754333 3777665 55777877555433 2245555555677778
Q ss_pred EEeeCCCccccCcchhhHHhhcCCe
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
++-|+|++- ...+.+.+|+..|+.
T Consensus 277 ~~~p~Gi~~-T~~~L~~la~~~g~~ 300 (461)
T TIGR01860 277 DVDTWGFNY-MAEALRKIGAFFGIE 300 (461)
T ss_pred cCCcCCHHH-HHHHHHHHHHHhCCc
Confidence 888888653 446889999988864
No 122
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=22.40 E-value=1.4e+02 Score=27.52 Aligned_cols=91 Identities=14% Similarity=0.213 Sum_probs=46.2
Q ss_pred EEEEcCCC--CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeC
Q 036415 249 ILISRKKS--RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPL 326 (419)
Q Consensus 249 ~~i~R~~~--R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~ 326 (419)
.+++|.+. +-.-+..++++.|++.|.++.+.+-...-.++.| ++..-++- ..-.....+..--.-+||+|-
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~--~L~~l~i~-----~~~~~~~~~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE--LLKLLEID-----DADGDGVPLIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH--HHHHTT-C---------------CCECEEEESSS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH--HHHhcCCC-----ccccccccchhhcchhheecC
Confidence 67888887 8888999999999999999988764221223333 23332333 111334444455455888885
Q ss_pred CCccccCcchhhHHhhcCCeEEEE
Q 036415 327 GLEWASTNYYGAPTKEMGVQYLEY 350 (419)
Q Consensus 327 g~~~~~~~~y~~lA~~~gl~Y~~y 350 (419)
. -..+|.++.+..|+.|-+.
T Consensus 108 s----K~~Hf~~i~~~tgI~y~eM 127 (169)
T PF12689_consen 108 S----KTTHFRRIHRKTGIPYEEM 127 (169)
T ss_dssp -----HHHHHHHHHHHH---GGGE
T ss_pred c----hHHHHHHHHHhcCCChhHE
Confidence 4 4568999999999988654
No 123
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=22.36 E-value=1.2e+02 Score=31.84 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe--cchhhhhhhccCCCcEEEEEeeCCCccccCcchhh
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGA--HGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYYGA 338 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgv--HGAgLtn~lFm~pgs~vIEI~P~g~~~~~~~~y~~ 338 (419)
|..|+.+.|+++|.++..+-+. .+++|. +-+.+|..-|.+ +. +.+-.++.+-|...++..|.|++- ...+.+.
T Consensus 178 d~~eik~lL~~~Gi~~~~~~~G--~~~~ei-~~a~~A~~~i~l~~~~-~~a~~l~~~~GvP~~~~~PiG~~~-Td~fL~~ 252 (422)
T TIGR02015 178 DAMVIGGVLQPIGVESGPTVPG--RDWREL-YAALDSSAVAVLHPFY-EATARLFEAAGVKIVGSAPVGANG-TGEWLER 252 (422)
T ss_pred cHHHHHHHHHHcCCCeEEecCC--CCHHHH-HhhhcCeEEEEeCccc-hHHHHHHHHcCCceeccCCCChHH-HHHHHHH
Confidence 7788999999999999766543 577665 445555444444 32 356677777787778888999653 4568899
Q ss_pred HHhhcCCe
Q 036415 339 PTKEMGVQ 346 (419)
Q Consensus 339 lA~~~gl~ 346 (419)
+|+..|..
T Consensus 253 la~~~G~~ 260 (422)
T TIGR02015 253 IGEALDLD 260 (422)
T ss_pred HHHHhCcC
Confidence 99998864
No 124
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=22.03 E-value=3.2e+02 Score=24.56 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=36.0
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcC-----CEEEEecchhhhhh
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSC-----SVLVGAHGAGLTNQ 311 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~a-----dvlVgvHGAgLtn~ 311 (419)
..++++++|+....- ...+.++.+++.|.+|.+...+- .+.++-.+++..+ .|=--+|+||...-
T Consensus 25 ~~~~il~~r~~~~~~-~~~~~i~~l~~~g~~v~~~~~Dv-~d~~~v~~~~~~~~~~~~~i~gVih~ag~~~~ 94 (181)
T PF08659_consen 25 ARRLILLGRSGAPSA-EAEAAIRELESAGARVEYVQCDV-TDPEAVAAALAQLRQRFGPIDGVIHAAGVLAD 94 (181)
T ss_dssp -SEEEEEESSGGGST-THHHHHHHHHHTT-EEEEEE--T-TSHHHHHHHHHTSHTTSS-EEEEEE-------
T ss_pred CCEEEEeccCCCccH-HHHHHHHHHHhCCCceeeeccCc-cCHHHHHHHHHHHHhccCCcceeeeeeeeecc
Confidence 458899999842111 22257788888899998876653 5566666666665 56677899988653
No 125
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.96 E-value=2e+02 Score=30.90 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=66.8
Q ss_pred CCcEEEEEEcC--CCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hh--hhhhhccCCCc
Q 036415 244 EKPILILISRK--KSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AG--LTNQVFLPDGA 318 (419)
Q Consensus 244 ~~pr~~~i~R~--~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-Ag--Ltn~lFm~pgs 318 (419)
.++.+-||.=. +.+.--|..|+.++|+++|++|..+-+.. .++++. +-+.+|++-|.+.+ .| ++..|-=+=|.
T Consensus 157 ~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g-~s~~dl-~~l~~A~~NIv~~~~~g~~~A~~Le~~fGi 234 (511)
T TIGR01278 157 EKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWG-ASIADL-ARLPAAWLNICPYREIGLMAAEYLKEKFGQ 234 (511)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC-CCHHHH-HhcccCcEEEEechHHHHHHHHHHHHHhCC
Confidence 45667777543 22555688899999999999998764542 677665 45688888777654 45 44444333455
Q ss_pred EEEEEeeCCCccccCcchhhHHhhc---CCe
Q 036415 319 VMVQVVPLGLEWASTNYYGAPTKEM---GVQ 346 (419)
Q Consensus 319 ~vIEI~P~g~~~~~~~~y~~lA~~~---gl~ 346 (419)
-.+...|.|++. ...+.+.+++.. |+.
T Consensus 235 P~i~~~PiG~~~-T~~fL~~l~~~~~~~g~~ 264 (511)
T TIGR01278 235 PYITTTPIGVNA-TRRFIREIAALLNQAGAD 264 (511)
T ss_pred CcccccccCHHH-HHHHHHHHHHHHhhcCCC
Confidence 556568999643 445788888877 754
No 126
>PRK09989 hypothetical protein; Provisional
Probab=21.83 E-value=1.7e+02 Score=28.02 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhh
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLT 309 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLt 309 (419)
...+.++.+++.||+-+.+-.....+.++-.+++.+..+-|..|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~ 64 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPG 64 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCC
Confidence 5678889999999987765333348888888899999999998877654
No 127
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.72 E-value=4.2e+02 Score=21.63 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEEEEe
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVN--SCSVLVGA 303 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~--~advlVgv 303 (419)
|+++..+....-=+...-+...|++.|++|..++.. .+.++..+.+. +.|+ ||+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~--~~~~~l~~~~~~~~pd~-V~i 57 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN--VPPEELVEALRAERPDV-VGI 57 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS--B-HHHHHHHHHHTTCSE-EEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC--CCHHHHHHHHhcCCCcE-EEE
Confidence 456666665555556667788999999999988764 34444433332 5566 444
No 128
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.55 E-value=1.1e+02 Score=32.20 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=61.8
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcC-----------------CCCCCHHHHHHHHhcCCE--EEEe-
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRP-----------------NRMSNLNKFAALVNSCSV--LVGA- 303 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~-----------------~~~~s~~eq~~l~~~adv--lVgv- 303 (419)
++.++-+|....+ -.+.+|+.++|+++|.+++.+-. ..+.+++|. +-+.+|+. +++.
T Consensus 154 ~~~~VNlig~~~~--~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i-~~~~~A~lniv~~~~ 230 (429)
T cd03466 154 KIEKINVIAGMMS--PADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEI-KGMGGAKATIELGMF 230 (429)
T ss_pred CCCcEEEECCCCC--hhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHH-HhhccCcEEEEEccC
Confidence 3556667764322 34788999999999999975321 113566655 45666555 4453
Q ss_pred cchh--hhhhhccCCCcEEEEE-eeCCCccccCcchhhHHhhcCCe
Q 036415 304 HGAG--LTNQVFLPDGAVMVQV-VPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 304 HGAg--Ltn~lFm~pgs~vIEI-~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
+++| ++..|-=+=|.-.+.. +|.|++. ...+++.+++..|..
T Consensus 231 ~~~g~~~A~~L~e~~giP~~~~~~P~G~~~-t~~~l~~l~~~~g~~ 275 (429)
T cd03466 231 VDHGLSAGSYLEEEFGIPNYRLPLPIGLRA-TDEFMSLLSKLTGKP 275 (429)
T ss_pred ccchHHHHHHHHHHHCCCeeecCCCcChHH-HHHHHHHHHHHHCCC
Confidence 1444 4455555556654443 7888654 456889999888865
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.50 E-value=3.9e+02 Score=26.13 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=48.0
Q ss_pred CcEEEEEEcCC--CCccc--CHHHHHHHHHHcCCEEEEE-cCC-------------------CCCCHHHHHHHHhcCCEE
Q 036415 245 KPILILISRKK--SRVVS--NENEIVVMMEELGFEVVVT-RPN-------------------RMSNLNKFAALVNSCSVL 300 (419)
Q Consensus 245 ~pr~~~i~R~~--~R~i~--Ne~ev~~~l~~~gf~v~~~-e~~-------------------~~~s~~eq~~l~~~advl 300 (419)
+|.+++..-.+ .|++- +-.++++.+.+.|+.++.+ ... ...++.|-+++++.||++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEE
Confidence 45554443321 26665 4447777776668887654 211 136899999999999999
Q ss_pred EEecchhhhhhhccCCCcEEEEEee
Q 036415 301 VGAHGAGLTNQVFLPDGAVMVQVVP 325 (419)
Q Consensus 301 VgvHGAgLtn~lFm~pgs~vIEI~P 325 (419)
||.=.+ ..|+-=+- |+-+|-|+.
T Consensus 259 I~~DSg-p~HlAaa~-g~P~i~lfg 281 (319)
T TIGR02193 259 VGVDTG-LTHLAAAL-DKPTVTLYG 281 (319)
T ss_pred EeCCCh-HHHHHHHc-CCCEEEEEC
Confidence 997543 33333222 566666664
No 130
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=21.16 E-value=2e+02 Score=29.98 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=42.7
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCC-----CCCHHHHHHHHhcCCEEEEec---------chhhhh-
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNR-----MSNLNKFAALVNSCSVLVGAH---------GAGLTN- 310 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~-----~~s~~eq~~l~~~advlVgvH---------GAgLtn- 310 (419)
-++.||.-.+- =.++++.++.+|++|...++.. ...+...-+++..||+|+--- --+|-|
T Consensus 117 ktvGIIG~G~I-----G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~ 191 (381)
T PRK00257 117 RTYGVVGAGHV-----GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE 191 (381)
T ss_pred CEEEEECCCHH-----HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCH
Confidence 34556654421 1257788889999999887521 112223345678999987211 112322
Q ss_pred --hhccCCCcEEEEE
Q 036415 311 --QVFLPDGAVMVQV 323 (419)
Q Consensus 311 --~lFm~pgs~vIEI 323 (419)
+--|+||+.+|-.
T Consensus 192 ~~l~~mk~gailIN~ 206 (381)
T PRK00257 192 AFLASLRPGAWLINA 206 (381)
T ss_pred HHHhcCCCCeEEEEC
Confidence 2338899888855
No 131
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=20.94 E-value=1.2e+02 Score=26.70 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCCCccccCcchhhHHhh
Q 036415 263 NEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYYGAPTKE 342 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~ 342 (419)
.+++++++..||+|+++++.. - .|..++-+....-..+...+-+++++.| |+-.+.+| .+.-+-..
T Consensus 11 ~al~~la~~lg~~v~v~d~r~-e-------~~~~~~~~~~~~~~~~~~~~~~~~~t~V--v~th~h~~----D~~~L~~~ 76 (136)
T PF13478_consen 11 RALARLAALLGFRVTVVDPRP-E-------RFPEADEVICIPPDDILEDLEIDPNTAV--VMTHDHEL----DAEALEAA 76 (136)
T ss_dssp HHHHHHHHHCTEEEEEEES-C-C-------C-TTSSEEECSHHHHHHHHC-S-TT-EE--E--S-CCC----HHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCc-c-------ccCCCCccEecChHHHHhccCCCCCeEE--EEcCCchh----HHHHHHHH
Confidence 467888889999999999864 1 3457776665554445455578888886 45444322 23333332
Q ss_pred --cCCeEEEE
Q 036415 343 --MGVQYLEY 350 (419)
Q Consensus 343 --~gl~Y~~y 350 (419)
.+..|+..
T Consensus 77 l~~~~~YiG~ 86 (136)
T PF13478_consen 77 LASPARYIGL 86 (136)
T ss_dssp TTSS-SEEEE
T ss_pred HcCCCCEEEe
Confidence 35667654
No 132
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=20.92 E-value=4e+02 Score=27.41 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCC----CCCHHHHHHHH--hcCCEEEEecc
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNR----MSNLNKFAALV--NSCSVLVGAHG 305 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~----~~s~~eq~~l~--~~advlVgvHG 305 (419)
|++++..++.++---.+++.+.|++.|.++.+.+... ..++.+.++.+ .++|+|||+=|
T Consensus 24 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG 88 (386)
T cd08191 24 RALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG 88 (386)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6677775554443445678889999898887664321 12233444433 47899999988
No 133
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=20.74 E-value=2.2e+02 Score=30.37 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCcEEEEEEcCCC------C--cccCHHHHH--------HHHHHc-CCEEEEEcC-CCCCCHHHHHHHHh--cCCEEEEe
Q 036415 244 EKPILILISRKKS------R--VVSNENEIV--------VMMEEL-GFEVVVTRP-NRMSNLNKFAALVN--SCSVLVGA 303 (419)
Q Consensus 244 ~~pr~~~i~R~~~------R--~i~Ne~ev~--------~~l~~~-gf~v~~~e~-~~~~s~~eq~~l~~--~advlVgv 303 (419)
.++.+|+|+=... . .=+-|.+|. +.|++. |++|+.... +...++.|-.++.+ +||++|++
T Consensus 189 ~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFISI 268 (445)
T PRK10431 189 GDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSI 268 (445)
T ss_pred CCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 4566788886532 2 224566552 333444 799876544 34588999888888 89999999
Q ss_pred cchhhhh
Q 036415 304 HGAGLTN 310 (419)
Q Consensus 304 HGAgLtn 310 (419)
|--+..+
T Consensus 269 HaNa~~~ 275 (445)
T PRK10431 269 HADAAPN 275 (445)
T ss_pred ccCCCCC
Confidence 9887765
No 134
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=20.43 E-value=2.2e+02 Score=30.91 Aligned_cols=60 Identities=12% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHHHHcCCEEEEEcCCC----------CCC---HHHHHH----HHhcCCEEEEec---ch-h---hhhhh--ccCCCc
Q 036415 265 IVVMMEELGFEVVVTRPNR----------MSN---LNKFAA----LVNSCSVLVGAH---GA-G---LTNQV--FLPDGA 318 (419)
Q Consensus 265 v~~~l~~~gf~v~~~e~~~----------~~s---~~eq~~----l~~~advlVgvH---GA-g---Ltn~l--Fm~pgs 318 (419)
..+.++++|.+.+.++..+ .++ .+.|.+ ....+||+|+-- |. . +|.-+ =|+||+
T Consensus 199 rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGs 278 (511)
T TIGR00561 199 VKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGS 278 (511)
T ss_pred HHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCC
Confidence 4667777888887666421 011 122333 345799998866 64 2 44444 389999
Q ss_pred EEEEEe
Q 036415 319 VMVQVV 324 (419)
Q Consensus 319 ~vIEI~ 324 (419)
++|-+-
T Consensus 279 vIVDlA 284 (511)
T TIGR00561 279 VIVDLA 284 (511)
T ss_pred EEEEee
Confidence 999885
No 135
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.20 E-value=2.5e+02 Score=24.00 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHH-HHhcCCEEEEecchhhhhh
Q 036415 260 SNENEIVVMMEELGFEVVVTR--PNRMSNLNKFAA-LVNSCSVLVGAHGAGLTNQ 311 (419)
Q Consensus 260 ~Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~-l~~~advlVgvHGAgLtn~ 311 (419)
.|..-+.+.+++.|+++.... +++...+.+.++ +..++|+||..=|+|.+.-
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~ 72 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPD 72 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCC
Confidence 466678899999998875432 333244556553 4567999999988886543
No 136
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.15 E-value=2.2e+02 Score=26.39 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=37.1
Q ss_pred CCCcEEEEEEcCCC---CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH
Q 036415 243 REKPILILISRKKS---RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV 294 (419)
Q Consensus 243 ~~~pr~~~i~R~~~---R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~ 294 (419)
...|.++++.-+.- ++.+++++..++++++|..-..........+++-++++
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence 35678888877653 99999999999999998654443333346677666543
No 137
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.13 E-value=3.9e+02 Score=24.76 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=44.5
Q ss_pred CCCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEecch
Q 036415 243 REKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSV-LVGAHGA 306 (419)
Q Consensus 243 ~~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~adv-lVgvHGA 306 (419)
..++++++..=.+...=+-..-+..+++..||+|+.+.. +.|.++.++.+...+. +||+-.+
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~--~vp~e~~v~~~~~~~pd~v~lS~~ 144 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR--DVPIDTVVEKVKKEKPLMLTGSAL 144 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEccc
Confidence 356788777766655555555566788889999998755 4999999998887766 5555443
Done!