Query 036415
Match_columns 419
No_of_seqs 278 out of 723
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4e_A Quinate/shikimate dehyd 74.9 16 0.00055 35.3 10.3 94 246-347 173-276 (312)
2 3tnl_A Shikimate dehydrogenase 72.1 23 0.00078 34.3 10.5 94 246-347 179-282 (315)
3 3czx_A Putative N-acetylmuramo 68.9 6.8 0.00023 34.9 5.6 46 265-310 37-84 (182)
4 4a5o_A Bifunctional protein fo 64.1 13 0.00045 35.7 6.8 72 245-324 161-233 (286)
5 3ngx_A Bifunctional protein fo 63.7 13 0.00043 35.7 6.6 71 245-323 150-221 (276)
6 3p2o_A Bifunctional protein fo 60.0 17 0.00057 35.0 6.7 72 244-323 159-231 (285)
7 3l07_A Bifunctional protein fo 59.7 18 0.0006 34.8 6.8 72 244-323 160-232 (285)
8 4a26_A Putative C-1-tetrahydro 56.2 22 0.00075 34.4 6.8 73 245-323 165-238 (300)
9 1a4i_A Methylenetetrahydrofola 55.2 12 0.00042 36.2 4.9 72 244-323 164-236 (301)
10 3qay_A Endolysin; amidase A/B 52.8 23 0.0008 31.2 6.0 43 266-308 39-89 (180)
11 3fni_A Putative diflavin flavo 51.9 15 0.00052 31.4 4.6 55 244-301 5-61 (159)
12 1jwq_A N-acetylmuramoyl-L-alan 50.7 23 0.00079 31.3 5.6 45 266-310 38-86 (179)
13 2amj_A Modulator of drug activ 49.0 27 0.00093 31.1 5.9 40 264-303 38-77 (204)
14 1b0a_A Protein (fold bifunctio 47.6 30 0.001 33.2 6.2 72 244-323 158-230 (288)
15 2zuv_A Lacto-N-biose phosphory 47.5 6 0.00021 42.5 1.4 126 244-382 437-603 (759)
16 2q62_A ARSH; alpha/beta, flavo 46.5 35 0.0012 31.7 6.4 58 244-303 33-105 (247)
17 3don_A Shikimate dehydrogenase 45.8 36 0.0012 32.2 6.5 58 286-347 165-229 (277)
18 2fzv_A Putative arsenical resi 45.1 37 0.0013 32.3 6.4 58 244-303 57-130 (279)
19 3ne8_A N-acetylmuramoyl-L-alan 45.0 33 0.0011 31.7 5.9 44 267-310 41-88 (234)
20 1psw_A ADP-heptose LPS heptosy 45.0 91 0.0031 29.1 9.3 69 257-327 195-290 (348)
21 1xov_A PLY protein, plypsa; al 41.3 18 0.0006 35.4 3.6 42 266-307 47-94 (326)
22 3jyo_A Quinate/shikimate dehyd 41.2 31 0.0011 32.7 5.2 87 247-347 153-248 (283)
23 3hly_A Flavodoxin-like domain; 40.9 27 0.00092 29.8 4.4 52 247-301 4-56 (161)
24 3s40_A Diacylglycerol kinase; 40.8 1.5E+02 0.0053 27.7 10.2 66 262-327 28-98 (304)
25 3rpe_A MDAB, modulator of drug 40.7 29 0.001 31.7 4.8 40 264-303 51-90 (218)
26 4b4u_A Bifunctional protein fo 39.8 58 0.002 31.5 6.9 74 245-329 179-253 (303)
27 1qtn_A Caspase-8; apoptosis, d 39.8 34 0.0012 29.9 4.9 51 262-317 57-118 (164)
28 2egg_A AROE, shikimate 5-dehyd 38.4 85 0.0029 29.6 7.9 58 287-348 195-260 (297)
29 3hg7_A D-isomer specific 2-hyd 38.3 2.3E+02 0.0078 27.2 11.1 103 264-376 154-275 (324)
30 3pp8_A Glyoxylate/hydroxypyruv 38.2 2.2E+02 0.0075 27.1 10.9 136 263-419 152-307 (315)
31 2dko_A Caspase-3; low barrier 37.4 30 0.001 29.6 4.1 51 262-317 43-104 (146)
32 4dio_A NAD(P) transhydrogenase 37.3 58 0.002 32.7 6.7 35 290-324 269-312 (405)
33 2c2x_A Methylenetetrahydrofola 37.0 32 0.0011 32.9 4.5 72 244-323 157-231 (281)
34 2eez_A Alanine dehydrogenase; 36.8 88 0.003 30.4 8.0 92 256-352 13-117 (369)
35 3vue_A GBSS-I, granule-bound s 36.5 1E+02 0.0036 31.5 8.8 49 224-280 312-363 (536)
36 2gt1_A Lipopolysaccharide hept 36.2 1E+02 0.0034 28.8 8.0 81 244-326 177-281 (326)
37 1edz_A 5,10-methylenetetrahydr 35.7 31 0.001 33.6 4.3 76 244-323 176-274 (320)
38 2ql9_A Caspase-7; cysteine pro 35.5 29 0.00098 30.8 3.7 51 262-317 71-132 (173)
39 3qhp_A Type 1 capsular polysac 35.4 57 0.0019 26.7 5.5 51 245-304 32-82 (166)
40 3h11_A CAsp8 and FADD-like apo 34.0 38 0.0013 32.0 4.6 66 244-318 42-119 (272)
41 2j32_A Caspase-3; Pro-caspase3 33.4 37 0.0013 31.5 4.4 55 261-317 42-104 (250)
42 2vhw_A Alanine dehydrogenase; 33.4 1.1E+02 0.0037 29.9 8.0 91 256-350 13-117 (377)
43 1nw9_B Caspase 9, apoptosis-re 33.3 32 0.0011 32.5 3.9 44 261-307 47-101 (277)
44 3gvp_A Adenosylhomocysteinase 32.6 45 0.0016 33.9 5.1 58 264-324 234-307 (435)
45 3p2y_A Alanine dehydrogenase/p 32.4 60 0.002 32.3 5.9 35 290-324 259-302 (381)
46 2rir_A Dipicolinate synthase, 32.4 66 0.0022 30.2 6.0 53 292-349 211-266 (300)
47 2bfw_A GLGA glycogen synthase; 31.8 58 0.002 27.5 5.1 53 245-304 70-123 (200)
48 3l4e_A Uncharacterized peptida 31.0 66 0.0023 28.9 5.5 64 245-309 27-92 (206)
49 1mkz_A Molybdenum cofactor bio 30.7 1.1E+02 0.0036 26.6 6.7 68 243-310 8-83 (172)
50 1m72_A Caspase-1; caspase, cys 30.6 44 0.0015 31.5 4.4 54 262-317 58-119 (272)
51 3zy2_A Putative GDP-fucose pro 29.9 56 0.0019 32.3 5.0 63 245-313 279-341 (362)
52 1l7d_A Nicotinamide nucleotide 29.7 2E+02 0.007 27.9 9.3 92 256-351 13-123 (384)
53 3tov_A Glycosyl transferase fa 29.6 2.5E+02 0.0085 26.7 9.8 80 245-326 185-289 (349)
54 2qv7_A Diacylglycerol kinase D 28.8 2.2E+02 0.0075 27.0 9.2 66 262-327 44-115 (337)
55 3sir_A Caspase; hydrolase; 2.6 28.7 51 0.0017 30.8 4.4 54 261-316 45-106 (259)
56 1i1q_B Anthranilate synthase c 28.7 47 0.0016 29.0 4.0 52 246-303 1-55 (192)
57 3pwz_A Shikimate dehydrogenase 28.5 1.3E+02 0.0046 28.0 7.4 48 295-346 180-233 (272)
58 3h9u_A Adenosylhomocysteinase; 27.9 81 0.0028 32.0 6.0 74 246-327 212-301 (436)
59 3p45_A Caspase-6; protease, hu 27.9 57 0.002 29.0 4.4 52 262-318 71-133 (179)
60 3pzy_A MOG; ssgcid, seattle st 27.9 66 0.0022 27.8 4.7 66 244-310 6-80 (164)
61 2yxb_A Coenzyme B12-dependent 26.7 1.5E+02 0.0052 25.2 6.9 56 243-300 16-73 (161)
62 2pjk_A 178AA long hypothetical 26.6 1.7E+02 0.006 25.4 7.4 68 243-310 13-95 (178)
63 3o8q_A Shikimate 5-dehydrogena 26.5 41 0.0014 31.8 3.4 48 295-346 186-239 (281)
64 1f1j_A Caspase-7 protease; cas 26.4 42 0.0014 32.3 3.4 52 261-317 95-157 (305)
65 2h54_A Caspase-1; allosteric s 26.2 63 0.0021 28.5 4.3 46 245-293 43-95 (178)
66 2nn3_C Caspase-1; cysteine pro 26.2 65 0.0022 31.1 4.7 55 261-317 85-147 (310)
67 3h11_B Caspase-8; cell death, 25.9 70 0.0024 30.1 4.9 52 261-317 50-112 (271)
68 2d5c_A AROE, shikimate 5-dehyd 24.7 1.6E+02 0.0053 26.8 7.0 90 247-348 118-226 (263)
69 3rht_A (gatase1)-like protein; 23.9 33 0.0011 32.3 2.1 73 245-324 4-86 (259)
70 3od5_A Caspase-6; caspase doma 23.7 63 0.0022 30.5 4.1 53 261-318 47-110 (278)
71 3okp_A GDP-mannose-dependent a 23.7 3.2E+02 0.011 25.2 9.2 70 224-303 185-279 (394)
72 2fi0_A Conserved domain protei 23.3 54 0.0019 25.0 2.9 21 257-277 58-78 (81)
73 3ezx_A MMCP 1, monomethylamine 22.5 1.5E+02 0.005 26.7 6.2 63 243-307 90-153 (215)
74 1y5e_A Molybdenum cofactor bio 22.3 1.8E+02 0.0061 24.9 6.5 68 243-310 11-86 (169)
75 2fz5_A Flavodoxin; alpha/beta 22.3 77 0.0026 25.2 3.9 54 248-308 4-61 (137)
76 3rfq_A Pterin-4-alpha-carbinol 21.8 93 0.0032 27.6 4.6 70 242-311 27-104 (185)
77 3aek_B Light-independent proto 21.7 34 0.0012 35.4 1.9 101 244-347 152-257 (525)
78 2f62_A Nucleoside 2-deoxyribos 21.7 1.2E+02 0.0042 26.2 5.3 39 263-303 30-74 (161)
79 1z0s_A Probable inorganic poly 21.5 1.9E+02 0.0063 27.4 6.9 53 245-309 29-81 (278)
80 3pdi_B Nitrogenase MOFE cofact 21.4 42 0.0014 34.1 2.5 100 243-346 167-288 (458)
81 3fbt_A Chorismate mutase and s 21.4 2.7E+02 0.0093 26.1 8.1 91 246-347 123-233 (282)
82 4ehd_A Caspase-3; caspase, apo 21.3 82 0.0028 29.8 4.4 55 261-317 70-132 (277)
83 2ohh_A Type A flavoprotein FPR 21.2 80 0.0027 30.4 4.4 55 245-302 258-313 (404)
84 1pyo_A Caspase-2; apoptosis, c 21.2 84 0.0029 27.4 4.1 69 244-317 32-122 (167)
85 2fp3_A Caspase NC; apoptosis, 20.9 65 0.0022 31.1 3.6 71 245-318 61-153 (316)
86 1x13_A NAD(P) transhydrogenase 20.7 1.2E+02 0.0041 30.0 5.6 59 264-323 186-291 (401)
No 1
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=74.94 E-value=16 Score=35.34 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=61.7
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhh---h------hhccC
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEE-LGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLT---N------QVFLP 315 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~-~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLt---n------~lFm~ 315 (419)
.++++++|+..| ....+++.+.+.+ .|..+...+. .++.+..+.+..+|+||..-.+||. . .-+++
T Consensus 173 ~~v~v~nRt~~~-~~~a~~la~~~~~~~~~~v~~~~~---~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~ 248 (312)
T 3t4e_A 173 KEIKLFNRKDDF-FEKAVAFAKRVNENTDCVVTVTDL---ADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLR 248 (312)
T ss_dssp SEEEEEECSSTH-HHHHHHHHHHHHHHSSCEEEEEET---TCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSC
T ss_pred CEEEEEECCCch-HHHHHHHHHHhhhccCcceEEech---HhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcC
Confidence 478888887443 3344556555544 5777766554 2332224567899999999998872 1 12467
Q ss_pred CCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 316 DGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 316 pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
++.+|++++- ++ ..+.|-..|+..|.+.
T Consensus 249 ~~~~v~D~vY---~P-~~T~ll~~A~~~G~~~ 276 (312)
T 3t4e_A 249 PELLVTECVY---NP-HMTKLLQQAQQAGCKT 276 (312)
T ss_dssp TTCEEEECCC---SS-SSCHHHHHHHHTTCEE
T ss_pred CCCEEEEecc---CC-CCCHHHHHHHHCCCeE
Confidence 8899999862 22 3467888899999764
No 2
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=72.07 E-value=23 Score=34.32 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhh---------hhccC
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEE-LGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTN---------QVFLP 315 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~-~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn---------~lFm~ 315 (419)
.++++++|+.. .....+++.+.+.+ .|.++.....+ +.++.-+.+..+|+||..-.+|+.. .-+++
T Consensus 179 ~~V~i~nR~~~-~~~~a~~la~~~~~~~~~~~~~~~~~---~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~ 254 (315)
T 3tnl_A 179 KEISIFNRKDD-FYANAEKTVEKINSKTDCKAQLFDIE---DHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLR 254 (315)
T ss_dssp SEEEEEECSST-THHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCC
T ss_pred CEEEEEECCCc-hHHHHHHHHHHhhhhcCCceEEeccc---hHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcC
Confidence 37888888742 23345556655554 57777665542 2344445678999999888888752 12468
Q ss_pred CCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 316 DGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 316 pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
++.+|++++- ++ ..+.|-..|+..|++.
T Consensus 255 ~~~~V~DlvY---~P-~~T~ll~~A~~~G~~~ 282 (315)
T 3tnl_A 255 PELIVSDVVY---KP-TKTRLLEIAEEQGCQT 282 (315)
T ss_dssp TTCEEEESCC---SS-SSCHHHHHHHHTTCEE
T ss_pred CCCEEEEecc---CC-CCCHHHHHHHHCCCeE
Confidence 8899999862 22 3467888999999764
No 3
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=68.92 E-value=6.8 Score=34.87 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHHHHHc-CCEEEEEcC-CCCCCHHHHHHHHhcCCEEEEecchhhhh
Q 036415 265 IVVMMEEL-GFEVVVTRP-NRMSNLNKFAALVNSCSVLVGAHGAGLTN 310 (419)
Q Consensus 265 v~~~l~~~-gf~v~~~e~-~~~~s~~eq~~l~~~advlVgvHGAgLtn 310 (419)
|.+.|++. |++|+.... +...++.+-+++.++||++|+.|--+..|
T Consensus 37 l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 37 VASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred HHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 34556667 999987654 34579999999999999999999766554
No 4
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=64.13 E-value=13 Score=35.71 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. . -.-+..+|...|..|.++... +..+++ .+.+|||+|+.-|+. +...=|.+||++||-+
T Consensus 161 Gk~vvVvGrs~i---V-G~plA~lL~~~gAtVtv~hs~-T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 232 (286)
T 4a5o_A 161 GMDAVVVGASNI---V-GRPMALELLLGGCTVTVTHRF-TRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIVIDV 232 (286)
T ss_dssp TCEEEEECTTST---T-HHHHHHHHHHTTCEEEEECTT-CSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeCC-CcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEEEEe
Confidence 448899999863 0 113566777789999988543 255554 578999999999876 6666678999999988
Q ss_pred e
Q 036415 324 V 324 (419)
Q Consensus 324 ~ 324 (419)
-
T Consensus 233 g 233 (286)
T 4a5o_A 233 G 233 (286)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=63.71 E-value=13 Score=35.68 Aligned_cols=71 Identities=17% Similarity=0.348 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. =-.-+..+|...|..|.++... +.++++ .+.+|||+|+.-|+. +-..=|.+||++||-+
T Consensus 150 Gk~vvVvG~s~i----VG~plA~lL~~~gAtVtv~~~~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 221 (276)
T 3ngx_A 150 ENTVTIVNRSPV----VGRPLSMMLLNRNYTVSVCHSK-TKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSVVIDV 221 (276)
T ss_dssp SCEEEEECCCTT----THHHHHHHHHHTTCEEEEECTT-CSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCEEEEC
T ss_pred CCEEEEEcCChH----HHHHHHHHHHHCCCeEEEEeCC-cccHHH---hhccCCEEEECCCCCccccHhhccCCcEEEEe
Confidence 447899999763 0113566777789999988543 356654 578999999999874 6666678999999987
No 6
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=59.98 E-value=17 Score=35.00 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQ 322 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIE 322 (419)
..-++++|.|.+. . -.-+..+|...|..|.++... +..++ +.+.+|||+|+.-|+. +-..=|.+||++||-
T Consensus 159 ~Gk~vvVvGrs~i---V-G~p~A~lL~~~gAtVtv~h~~-t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVID 230 (285)
T 3p2o_A 159 EGKDAVIIGASNI---V-GRPMATMLLNAGATVSVCHIK-TKDLS---LYTRQADLIIVAAGCVNLLRSDMVKEGVIVVD 230 (285)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTT-CSCHH---HHHTTCSEEEECSSCTTCBCGGGSCTTEEEEE
T ss_pred CCCEEEEECCCch---H-HHHHHHHHHHCCCeEEEEeCC-chhHH---HHhhcCCEEEECCCCCCcCCHHHcCCCeEEEE
Confidence 3457899999863 0 113566777789999988543 24555 4588999999998875 656667899999998
Q ss_pred E
Q 036415 323 V 323 (419)
Q Consensus 323 I 323 (419)
+
T Consensus 231 V 231 (285)
T 3p2o_A 231 V 231 (285)
T ss_dssp C
T ss_pred e
Confidence 8
No 7
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=59.71 E-value=18 Score=34.80 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=52.0
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQ 322 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIE 322 (419)
..-++++|.|.+. . -.-+..+|...|..|.++... +..++ +.+.+|||+|+.-|+. +-..=|.+||++||.
T Consensus 160 ~Gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVID 231 (285)
T 3l07_A 160 EGAYAVVVGASNV---V-GKPVSQLLLNAKATVTTCHRF-TTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVVID 231 (285)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTT-CSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEEEE
T ss_pred CCCEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeCC-chhHH---HhcccCCEEEECCCCCCCCCHHHcCCCcEEEE
Confidence 3447889998763 0 113566777789999887532 24555 4588999999998875 555557799999998
Q ss_pred E
Q 036415 323 V 323 (419)
Q Consensus 323 I 323 (419)
+
T Consensus 232 v 232 (285)
T 3l07_A 232 V 232 (285)
T ss_dssp C
T ss_pred e
Confidence 8
No 8
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=56.23 E-value=22 Score=34.42 Aligned_cols=73 Identities=12% Similarity=0.280 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. . -.-+..+|...|..|.++.-. +.+++ ..+.+.+|||+|+.-|.. +-..=|++||++||-+
T Consensus 165 Gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~~~~-T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 238 (300)
T 4a26_A 165 GKRAVVLGRSNI---V-GAPVAALLMKENATVTIVHSG-TSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDV 238 (300)
T ss_dssp TCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTT-SCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEECCCch---H-HHHHHHHHHHCCCeEEEEeCC-CCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEE
Confidence 447889998763 0 113566777789999987542 13333 015789999999999875 5566678999999988
No 9
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=55.17 E-value=12 Score=36.24 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQ 322 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIE 322 (419)
..-++++|.|.+. + -.-+..+|...|..|.++... +..+ .+.+.+||++|+.-|.. +-..=|.+||++||-
T Consensus 164 ~gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~hs~-t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVID 235 (301)
T 1a4i_A 164 AGRHAVVVGRSKI---V-GAPMHDLLLWNNATVTTCHSK-TAHL---DEEVNKGDILVVATGQPEMVKGEWIKPGAIVID 235 (301)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTT-CSSH---HHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEE
T ss_pred CCCEEEEECCCch---H-HHHHHHHHHhCCCeEEEEECC-cccH---HHHhccCCEEEECCCCcccCCHHHcCCCcEEEE
Confidence 4558899999753 1 112566777789999987532 2344 45678999999999986 555556799999998
Q ss_pred E
Q 036415 323 V 323 (419)
Q Consensus 323 I 323 (419)
+
T Consensus 236 V 236 (301)
T 1a4i_A 236 C 236 (301)
T ss_dssp C
T ss_pred c
Confidence 8
No 10
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=52.80 E-value=23 Score=31.25 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=28.1
Q ss_pred HHHHHHcCCEE-EEEcCCCC-C----CHHHHHHHHh--cCCEEEEecchhh
Q 036415 266 VVMMEELGFEV-VVTRPNRM-S----NLNKFAALVN--SCSVLVGAHGAGL 308 (419)
Q Consensus 266 ~~~l~~~gf~v-~~~e~~~~-~----s~~eq~~l~~--~advlVgvHGAgL 308 (419)
.+.|++.|++| +++-.+.+ . ++.+-+++.+ .||++|+.|--+.
T Consensus 39 ~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 39 ADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 34555679996 33322211 2 4888888775 4999999997664
No 11
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=51.95 E-value=15 Score=31.45 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=40.4
Q ss_pred CCcEEEEEEcCCC-CcccCHHHHHHHHHHcCCEEEEEcCCCCC-CHHHHHHHHhcCCEEE
Q 036415 244 EKPILILISRKKS-RVVSNENEIVVMMEELGFEVVVTRPNRMS-NLNKFAALVNSCSVLV 301 (419)
Q Consensus 244 ~~pr~~~i~R~~~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~-s~~eq~~l~~~advlV 301 (419)
++.-++|-|..++ +++.+ .+.+.+++.|.+|.+.+... . +..+.+..+..+|.+|
T Consensus 5 ~kv~IvY~S~~GnT~~iA~--~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~d~ii 61 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQ--AIINGITKTGVGVDVVDLGA-AVDLQELRELVGRCTGLV 61 (159)
T ss_dssp CEEEEEECTTSTTHHHHHH--HHHHHHHHTTCEEEEEESSS-CCCHHHHHHHHHTEEEEE
T ss_pred CEEEEEEECCChHHHHHHH--HHHHHHHHCCCeEEEEECcC-cCCHHHHHHHHHhCCEEE
Confidence 3455677787765 77665 46677777899988887765 5 7888888888888665
No 12
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=50.66 E-value=23 Score=31.30 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHc-CCEEEEEcC-CCCCCHHHHHHHHh--cCCEEEEecchhhhh
Q 036415 266 VVMMEEL-GFEVVVTRP-NRMSNLNKFAALVN--SCSVLVGAHGAGLTN 310 (419)
Q Consensus 266 ~~~l~~~-gf~v~~~e~-~~~~s~~eq~~l~~--~advlVgvHGAgLtn 310 (419)
.+.|++. |++|+.... +...++.+-+++.+ .||++|+.|--+..+
T Consensus 38 ~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~ 86 (179)
T 1jwq_A 38 ESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS 86 (179)
T ss_dssp HHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS
T ss_pred HHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC
Confidence 4555566 999987544 33478999888887 699999999766543
No 13
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=48.99 E-value=27 Score=31.14 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe
Q 036415 264 EIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGA 303 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgv 303 (419)
++++.+++.|.+|.+++......+.+..+.+..||.||=.
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 3445555568888888876557788888999999988743
No 14
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=47.62 E-value=30 Score=33.25 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEEEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVMVQ 322 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~vIE 322 (419)
..-++++|.|.+. + -.-+..+|...|..|.++... +..+. +.+.+||++|+.-|+. +-..=|.+||++||-
T Consensus 158 ~gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~lI~~~~vk~GavVID 229 (288)
T 1b0a_A 158 FGLNAVVIGASNI---V-GRPMSMELLLAGCTTTVTHRF-TKNLR---HHVENADLLIVAVGKPGFIPGDWIKEGAIVID 229 (288)
T ss_dssp TTCEEEEECCCTT---T-HHHHHHHHHTTTCEEEEECSS-CSCHH---HHHHHCSEEEECSCCTTCBCTTTSCTTCEEEE
T ss_pred CCCEEEEECCChH---H-HHHHHHHHHHCCCeEEEEeCC-chhHH---HHhccCCEEEECCCCcCcCCHHHcCCCcEEEE
Confidence 4458899998753 1 112556677789999988543 24444 4578999999999977 555556799999998
Q ss_pred E
Q 036415 323 V 323 (419)
Q Consensus 323 I 323 (419)
+
T Consensus 230 V 230 (288)
T 1b0a_A 230 V 230 (288)
T ss_dssp C
T ss_pred c
Confidence 8
No 15
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=47.49 E-value=6 Score=42.53 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=77.6
Q ss_pred CCcEEEEEEcCCC-Cccc--------------CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhh
Q 036415 244 EKPILILISRKKS-RVVS--------------NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGL 308 (419)
Q Consensus 244 ~~pr~~~i~R~~~-R~i~--------------Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgL 308 (419)
.+.+|-+++=.++ |... ...=++++|...+++|..+.. ..+.+. ......|||| =+|.
T Consensus 437 ~~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsf---dDI~e~-e~L~d~DVII---n~G~ 509 (759)
T 2zuv_A 437 GELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISF---DDVLAH-GIDSDIDVII---NGGP 509 (759)
T ss_dssp CCSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEH---HHHHHH-CCCTTCCEEE---EEEC
T ss_pred cCceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecH---HHhccc-cccccCCEEE---ecCc
Confidence 3468888886665 5443 223388999999999988644 222222 4578999999 5666
Q ss_pred hhhhccCC------------------CcEEEEEeeC-CCc-cccCcchhhHHhhcCCeEEEEEeecCcCccccccC----
Q 036415 309 TNQVFLPD------------------GAVMVQVVPL-GLE-WASTNYYGAPTKEMGVQYLEYKIEPEESSLMQTYG---- 364 (419)
Q Consensus 309 tn~lFm~p------------------gs~vIEI~P~-g~~-~~~~~~y~~lA~~~gl~Y~~y~~~~~Essl~~~y~---- 364 (419)
+|..|+.+ |..+|=+--+ .+. + ...-|..||..+|++.....- .. ..+|+
T Consensus 510 A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~-g~gryFqLADVLGVd~e~g~d-lp----~gkY~~~~~ 583 (759)
T 2zuv_A 510 VDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRF-QTGRFFQLADVIGVDEERYQT-LS----VDKYFPPVV 583 (759)
T ss_dssp TTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEE-ETTEEETTHHHHSEEECCSSC-TT----BCCBCCCCC
T ss_pred chhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccc-cCcccccHHhhcCcccccCCc-CC----CCccccccC
Confidence 77777766 6777766522 221 1 223445599999987765421 11 34454
Q ss_pred CCCCcccCCc--cccccchh
Q 036415 365 RDHPVITDPA--SVFAKGYY 382 (419)
Q Consensus 365 ~~~~~~~dP~--~~~~~gW~ 382 (419)
.+|+++.|-. ...++||+
T Consensus 584 ~~HfIl~di~~~~~~~~gwe 603 (759)
T 2zuv_A 584 PDHFITADVPVDPAAREAWE 603 (759)
T ss_dssp CSCTTTTTCCCCHHHHHHHH
T ss_pred CCCceecccccccccccccc
Confidence 3688888632 12356884
No 16
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=46.46 E-value=35 Score=31.66 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=39.0
Q ss_pred CCcEEEEEEcCCCCcccCHHHH----HHHHHHcCCEEEEEcCCCCCC-----------HHHHHHHHhcCCEEEEe
Q 036415 244 EKPILILISRKKSRVVSNENEI----VVMMEELGFEVVVTRPNRMSN-----------LNKFAALVNSCSVLVGA 303 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev----~~~l~~~gf~v~~~e~~~~~s-----------~~eq~~l~~~advlVgv 303 (419)
...++++|.=. .|+=.|-..+ ++.+++.|.+|.+++... ++ +.+.++.+..||.+|=+
T Consensus 33 ~~mkIliI~GS-~r~~s~t~~La~~~~~~l~~~g~eve~idL~~-~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 33 HRPRILILYGS-LRTVSYSRLLAEEARRLLEFFGAEVKVFDPSG-LPLPDAAPVSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp SCCEEEEEECC-CCSSCHHHHHHHHHHHHHHHTTCEEEECCCTT-CCCTTSSCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCeEEEEEcc-CCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhc-CCCCcCCCCCCHHHHHHHHHHHHCCEEEEE
Confidence 34677777722 1433344334 445555799999988764 55 78888999999998854
No 17
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=45.84 E-value=36 Score=32.17 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=37.7
Q ss_pred CHHHHHHHHhcCCEEEEecchhhhhh-------hccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 286 NLNKFAALVNSCSVLVGAHGAGLTNQ-------VFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 286 s~~eq~~l~~~advlVgvHGAgLtn~-------lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
++.+..+.+..+|+||..-.+|+..- -+++++++|+.+.- .+ ..+.+-..|+..|++.
T Consensus 165 ~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY---~P-~~T~ll~~A~~~G~~~ 229 (277)
T 3don_A 165 NLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVY---NP-YKTPILIEAEQRGNPI 229 (277)
T ss_dssp CHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCC---SS-SSCHHHHHHHHTTCCE
T ss_pred cHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecC---CC-CCCHHHHHHHHCcCEE
Confidence 45665566889999998888886432 24688999999852 22 2346778888889764
No 18
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.08 E-value=37 Score=32.31 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=39.2
Q ss_pred CCcEEEEEEcCCCCcccCHH----HHHHHHHHcCCEEEEEcCCCCCC------------HHHHHHHHhcCCEEEEe
Q 036415 244 EKPILILISRKKSRVVSNEN----EIVVMMEELGFEVVVTRPNRMSN------------LNKFAALVNSCSVLVGA 303 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~----ev~~~l~~~gf~v~~~e~~~~~s------------~~eq~~l~~~advlVgv 303 (419)
...++++|.=. .|+=.|-. ++++.+++.|.++.+++... ++ +.+.++.+..||.+|=+
T Consensus 57 ~~mKILiI~GS-~R~~S~T~~La~~~~~~l~~~G~eveiidL~d-lpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 57 PPVRILLLYGS-LRARSFSRLAVEEAARLLQFFGAETRIFDPSD-LPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp SCCEEEEEESC-CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTT-CCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEEEeC-CCCCCHHHHHHHHHHHHHhhCCCEEEEEehhc-CCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 45688888722 13333333 34555666799999988754 55 77888999999998843
No 19
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=44.99 E-value=33 Score=31.74 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=32.4
Q ss_pred HHHHHcC-CEEEEEcC-CCCCCHHHHHHHHh--cCCEEEEecchhhhh
Q 036415 267 VMMEELG-FEVVVTRP-NRMSNLNKFAALVN--SCSVLVGAHGAGLTN 310 (419)
Q Consensus 267 ~~l~~~g-f~v~~~e~-~~~~s~~eq~~l~~--~advlVgvHGAgLtn 310 (419)
+.|++.| ++|+.... +...++.+.+++.+ .||++|++|--+..+
T Consensus 41 ~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~ 88 (234)
T 3ne8_A 41 DELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV 88 (234)
T ss_dssp HHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred HHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence 4444567 99887543 33478999988887 799999999766554
No 20
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=44.95 E-value=91 Score=29.14 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=46.6
Q ss_pred Cccc--CHHHHHHHHHHcCCEEEEEc-------------------------CCCCCCHHHHHHHHhcCCEEEEecchhhh
Q 036415 257 RVVS--NENEIVVMMEELGFEVVVTR-------------------------PNRMSNLNKFAALVNSCSVLVGAHGAGLT 309 (419)
Q Consensus 257 R~i~--Ne~ev~~~l~~~gf~v~~~e-------------------------~~~~~s~~eq~~l~~~advlVgvHGAgLt 309 (419)
|++- +..++++.|.+.|++++.+- ....+++.|.+++++.||++||+= +|..
T Consensus 195 k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~D-sg~~ 273 (348)
T 1psw_A 195 KRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND-SGLM 273 (348)
T ss_dssp GSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES-SHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecC-CHHH
Confidence 5555 55566666665577776531 112378999999999999999985 4555
Q ss_pred hhhccCCCcEEEEEeeCC
Q 036415 310 NQVFLPDGAVMVQVVPLG 327 (419)
Q Consensus 310 n~lFm~pgs~vIEI~P~g 327 (419)
|+--+ =|+-+|-|+...
T Consensus 274 HlAaa-~g~P~v~lfg~t 290 (348)
T 1psw_A 274 HVAAA-LNRPLVALYGPS 290 (348)
T ss_dssp HHHHH-TTCCEEEEESSS
T ss_pred HHHHH-cCCCEEEEECCC
Confidence 65433 477778888554
No 21
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=41.25 E-value=18 Score=35.42 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=26.9
Q ss_pred HHHHHHcCCEEE-E-EcCC--CCCCHHHHHHHHhc--CCEEEEecchh
Q 036415 266 VVMMEELGFEVV-V-TRPN--RMSNLNKFAALVNS--CSVLVGAHGAG 307 (419)
Q Consensus 266 ~~~l~~~gf~v~-~-~e~~--~~~s~~eq~~l~~~--advlVgvHGAg 307 (419)
.+.|++.|++|. + +.-+ ...++.+-+++.++ ||++|++|--+
T Consensus 47 ~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 47 SDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 344455699952 2 3222 12467777777664 99999999765
No 22
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=41.19 E-value=31 Score=32.70 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHHc--CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhh-------hhccCCC
Q 036415 247 ILILISRKKSRVVSNENEIVVMMEEL--GFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTN-------QVFLPDG 317 (419)
Q Consensus 247 r~~~i~R~~~R~i~Ne~ev~~~l~~~--gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn-------~lFm~pg 317 (419)
++++++|+.. ..+++.+.+... +.++...+. -++. +.+..+|+||..-.+|+.. .-+++++
T Consensus 153 ~v~i~~R~~~----~a~~la~~~~~~~~~~~i~~~~~---~~l~---~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~ 222 (283)
T 3jyo_A 153 KLQVADLDTS----RAQALADVINNAVGREAVVGVDA---RGIE---DVIAAADGVVNATPMGMPAHPGTAFDVSCLTKD 222 (283)
T ss_dssp EEEEECSSHH----HHHHHHHHHHHHHTSCCEEEECS---TTHH---HHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTT
T ss_pred EEEEEECCHH----HHHHHHHHHHhhcCCceEEEcCH---HHHH---HHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCC
Confidence 6777777532 234555555542 456655443 2333 4577899999888888753 2256788
Q ss_pred cEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 318 AVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 318 s~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
++|++++- ++ ..+.|-..|+..|.+.
T Consensus 223 ~~v~DlvY---~P-~~T~ll~~A~~~G~~~ 248 (283)
T 3jyo_A 223 HWVGDVVY---MP-IETELLKAARALGCET 248 (283)
T ss_dssp CEEEECCC---SS-SSCHHHHHHHHHTCCE
T ss_pred CEEEEecC---CC-CCCHHHHHHHHCcCeE
Confidence 99998862 22 3467888898889764
No 23
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=40.88 E-value=27 Score=29.76 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=36.7
Q ss_pred EEEEEEcCCC-CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 036415 247 ILILISRKKS-RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLV 301 (419)
Q Consensus 247 r~~~i~R~~~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlV 301 (419)
-++|-|..++ +++.+ .+.+.+++.|.+|.+.+... .+..+.+.-+.++|.+|
T Consensus 4 ~IvY~S~tGnT~~~A~--~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~d~ii 56 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQ--AIGRGLVKTGVAVEMVDLRA-VDPQELIEAVSSARGIV 56 (161)
T ss_dssp EEEECTTSTTHHHHHH--HHHHHHHHTTCCEEEEETTT-CCHHHHHHHHHHCSEEE
T ss_pred EEEEECCChHHHHHHH--HHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhCCEEE
Confidence 4667777765 65554 45666667799888877654 67888777788888665
No 24
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=40.77 E-value=1.5e+02 Score=27.73 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH-hcCCEEEEecchhhhhhh----ccCCCcEEEEEeeCC
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV-NSCSVLVGAHGAGLTNQV----FLPDGAVMVQVVPLG 327 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~-~~advlVgvHGAgLtn~l----Fm~pgs~vIEI~P~g 327 (419)
.+++.+.|++.|.++.+...+......++++.. ..+|.+|.+=|-|-.|.+ .-.+...-+=++|.|
T Consensus 28 ~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 28 LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhhCCCCCcEEEecCC
Confidence 457888888889888776554434455555443 478999999999866544 332345667789999
No 25
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=40.74 E-value=29 Score=31.73 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe
Q 036415 264 EIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGA 303 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgv 303 (419)
++.+.+++.|.+|.+++.....++.+..+.+..||+||=.
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 4556666679898888876667899889999999998754
No 26
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=39.79 E-value=58 Score=31.50 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=53.1
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccCCCcEEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLPDGAVMVQV 323 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~pgs~vIEI 323 (419)
.-++++|.|.+. --.-+..+|...|..|.+.... +..+.+ ...+|||+|+.-| +++-..=|.+||++||-+
T Consensus 179 Gk~vvViGRS~i----VGkPla~LL~~~~ATVTi~Hs~-T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDV 250 (303)
T 4b4u_A 179 GKHAVVVGRSAI----LGKPMAMMLLQANATVTICHSR-TQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAVVVDA 250 (303)
T ss_dssp TCEEEEECCCTT----THHHHHHHHHHTTCEEEEECTT-CSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEEecccc----ccchHHHHHHhcCCEEEEecCC-CCCHHH---HhhcCCeEEeccCCCCccccccccCCCEEEEe
Confidence 347889999864 1123456667789999887543 355655 5789999998877 556666689999999987
Q ss_pred eeCCCc
Q 036415 324 VPLGLE 329 (419)
Q Consensus 324 ~P~g~~ 329 (419)
|++
T Consensus 251 ---Gin 253 (303)
T 4b4u_A 251 ---GFH 253 (303)
T ss_dssp ---CCB
T ss_pred ---cee
Confidence 654
No 27
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=39.76 E-value=34 Score=29.92 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhcCC--------EEEEecchhhhhhhccCCC
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNK---FAALVNSCS--------VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~e---q~~l~~~ad--------vlVgvHGAgLtn~lFm~pg 317 (419)
.+.|.+.++++||+|.+.+. ++..| .++-++.-| ++|--||-- +.++...|
T Consensus 57 ~~~L~~~f~~LgF~V~~~~d---lt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~--g~i~g~D~ 118 (164)
T 1qtn_A 57 AGALTTTFEELHFEIKPHDD---CTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDG 118 (164)
T ss_dssp HHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTS
T ss_pred HHHHHHHHHHCCCEEEEecC---CCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCC--CEEEeeCC
Confidence 34566888889999988654 55554 444444444 556667753 56666555
No 28
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=38.43 E-value=85 Score=29.60 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCEEEEecchhhhh--------hhccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEE
Q 036415 287 LNKFAALVNSCSVLVGAHGAGLTN--------QVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYL 348 (419)
Q Consensus 287 ~~eq~~l~~~advlVgvHGAgLtn--------~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~ 348 (419)
+.+..+.+..+|+||..-++|+.- .-++++|++|+.+.- .+ ..+-+-..|+..|.+++
T Consensus 195 ~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y---~P-~~T~ll~~A~~~G~~~v 260 (297)
T 2egg_A 195 LAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY---NP-LETKWLKEAKARGARVQ 260 (297)
T ss_dssp HHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC---SS-SSCHHHHHHHHTTCEEE
T ss_pred HHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC---CC-CCCHHHHHHHHCcCEEE
Confidence 344445678999999999999841 124678899998852 22 23447777888898754
No 29
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=38.30 E-value=2.3e+02 Score=27.24 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCEEEEEcCCCC--------CCHHHHHHHHhcCCEEEEecc-----hhhhh-hhc--cCCCcEEEEEeeCC
Q 036415 264 EIVVMMEELGFEVVVTRPNRM--------SNLNKFAALVNSCSVLVGAHG-----AGLTN-QVF--LPDGAVMVQVVPLG 327 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~--------~s~~eq~~l~~~advlVgvHG-----AgLtn-~lF--m~pgs~vIEI~P~g 327 (419)
++++.|+.+|++|...+.... ....+.-+++..||+|+-.-- -++.| -.| |+||+.+|-+---+
T Consensus 154 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~ 233 (324)
T 3hg7_A 154 HIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGN 233 (324)
T ss_dssp HHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGG
T ss_pred HHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCch
Confidence 577888899999998765310 122344567899999986432 22222 223 89999999773222
Q ss_pred CccccCcchhhHHh---hcCCeEEEEEeecCcCccccccCCCCCcccCCccc
Q 036415 328 LEWASTNYYGAPTK---EMGVQYLEYKIEPEESSLMQTYGRDHPVITDPASV 376 (419)
Q Consensus 328 ~~~~~~~~y~~lA~---~~gl~Y~~y~~~~~Essl~~~y~~~~~~~~dP~~~ 376 (419)
. ..-..+++ .-++......+...| -.+.+||.++-|..+
T Consensus 234 ~-----vde~aL~~aL~~g~i~ga~lDV~~~E-----Pl~~~~pL~~~~nvi 275 (324)
T 3hg7_A 234 A-----INEGDLLTALRTGKLGMAVLDVFEQE-----PLPADSPLWGQPNLI 275 (324)
T ss_dssp G-----BCHHHHHHHHHTTSSSEEEESCCSSS-----SCCTTCTTTTCTTEE
T ss_pred h-----hCHHHHHHHHHcCCceEEEeccCCCC-----CCCCCChhhcCCCEE
Confidence 1 12233332 334554444443333 246677777777443
No 30
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=38.22 E-value=2.2e+02 Score=27.15 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC--------CCHHHHHHHHhcCCEEEEecc-hhhhhhhc-------cCCCcEEEEEeeC
Q 036415 263 NEIVVMMEELGFEVVVTRPNRM--------SNLNKFAALVNSCSVLVGAHG-AGLTNQVF-------LPDGAVMVQVVPL 326 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~--------~s~~eq~~l~~~advlVgvHG-AgLtn~lF-------m~pgs~vIEI~P~ 326 (419)
.++++.++.+|++|...+.... ....+.-+++..||+|+-.-- ..-|.-++ |+||+.+|-+---
T Consensus 152 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 231 (315)
T 3pp8_A 152 AKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARG 231 (315)
T ss_dssp HHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred HHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCC
Q ss_pred C-CccccCcchhhHHhhcCCeEEEEEeecCcCccccccCCCCCcccCCccc---cccchhhhhhhhcCCccEEEehHHHH
Q 036415 327 G-LEWASTNYYGAPTKEMGVQYLEYKIEPEESSLMQTYGRDHPVITDPASV---FAKGYYAARAVYIDAQNLKINVKRFK 402 (419)
Q Consensus 327 g-~~~~~~~~y~~lA~~~gl~Y~~y~~~~~Essl~~~y~~~~~~~~dP~~~---~~~gW~~~~~~yl~~Qdv~vd~~rf~ 402 (419)
+ + +...-...-+.-.+......+..+|- .+.+||.++.|..+ |-.|+. +. ....+
T Consensus 232 ~~v---d~~aL~~aL~~g~i~gA~lDV~~~EP-----l~~~~pL~~~~nvilTPHia~~t---------~~----~~~~~ 290 (315)
T 3pp8_A 232 VHV---QEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPRVAMTPHIAAVT---------RP----AEAID 290 (315)
T ss_dssp GGB---CHHHHHHHHHHTSEEEEEESCCSSSS-----CCTTCGGGGCTTEEECSSCSSCC---------CH----HHHHH
T ss_pred hhh---hHHHHHHHHHhCCccEEEcCCCCCCC-----CCCCChhhcCCCEEECCCCCccc---------HH----HHHHH
Q ss_pred HHHHHHHHhhcCCCCCC
Q 036415 403 ETVVQAKELIGRSSPLN 419 (419)
Q Consensus 403 ~~L~~a~~~l~~~~~~~ 419 (419)
..++.....+....|.|
T Consensus 291 ~~~~ni~~~~~G~~~~~ 307 (315)
T 3pp8_A 291 YISRTITQLEKGEPVTG 307 (315)
T ss_dssp HHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCCCc
No 31
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=37.44 E-value=30 Score=29.64 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHH---HHHHhcCC--------EEEEecchhhhhhhccCCC
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNKF---AALVNSCS--------VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~eq---~~l~~~ad--------vlVgvHGAgLtn~lFm~pg 317 (419)
.+.+.+.++++||+|.+.+. ++..|. ++-++.-| ++|--||- -+.++...|
T Consensus 43 ~~~L~~~f~~LgF~V~~~~d---lt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~--~g~i~g~D~ 104 (146)
T 2dko_A 43 AANLRETFRNLKYEVRNKND---LTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (146)
T ss_dssp HHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHCCCEEEEeeC---CCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCC--CCEEEEeCC
Confidence 34567888889999988654 665554 44444433 45555665 345555444
No 32
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=37.29 E-value=58 Score=32.73 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=25.3
Q ss_pred HHHHHhcCCEEEEecch-h------hhhhhc--cCCCcEEEEEe
Q 036415 290 FAALVNSCSVLVGAHGA-G------LTNQVF--LPDGAVMVQVV 324 (419)
Q Consensus 290 q~~l~~~advlVgvHGA-g------Ltn~lF--m~pgs~vIEI~ 324 (419)
..+.+..|||+|+..+. | ++.-++ |+||++||-+-
T Consensus 269 l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 45567899999987531 1 344444 89999999886
No 33
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=36.98 E-value=32 Score=32.94 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHc--CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchh-hhhhhccCCCcEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEEL--GFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAG-LTNQVFLPDGAVM 320 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~--gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAg-Ltn~lFm~pgs~v 320 (419)
..-++++|.|.+. +- .-+..+|... |..|.++... +. +..+.+.+||++|+.-|+. +-..=|.+||++|
T Consensus 157 ~gk~vvVvG~s~i---VG-~p~A~lL~~~g~~atVtv~h~~-t~---~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 228 (281)
T 2c2x_A 157 AGAHVVVIGRGVT---VG-RPLGLLLTRRSENATVTLCHTG-TR---DLPALTRQADIVVAAVGVAHLLTADMVRPGAAV 228 (281)
T ss_dssp TTCEEEEECCCTT---TH-HHHHHHHTSTTTCCEEEEECTT-CS---CHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCcH---HH-HHHHHHHhcCCCCCEEEEEECc-hh---HHHHHHhhCCEEEECCCCCcccCHHHcCCCcEE
Confidence 3458899998753 11 1245556666 8899887432 23 3445688999999999977 6555567999999
Q ss_pred EEE
Q 036415 321 VQV 323 (419)
Q Consensus 321 IEI 323 (419)
|-+
T Consensus 229 IDV 231 (281)
T 2c2x_A 229 IDV 231 (281)
T ss_dssp EEC
T ss_pred EEc
Confidence 987
No 34
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=36.81 E-value=88 Score=30.35 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=56.9
Q ss_pred CCcccCHHHHHHHHHHcCCEEEEEcCC---CCCCHHHHHH----------HHhcCCEEEEecchhhhhhhccCCCcEEEE
Q 036415 256 SRVVSNENEIVVMMEELGFEVVVTRPN---RMSNLNKFAA----------LVNSCSVLVGAHGAGLTNQVFLPDGAVMVQ 322 (419)
Q Consensus 256 ~R~i~Ne~ev~~~l~~~gf~v~~~e~~---~~~s~~eq~~----------l~~~advlVgvHGAgLtn~lFm~pgs~vIE 322 (419)
.||+-=..+-++.|.+.|++|.+-... ...+=+|..+ ++ +||+||++.----...-.++||..++-
T Consensus 13 e~Rv~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~vk~p~~~~~~~l~~~~~~~~ 91 (369)
T 2eez_A 13 ENRVALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKVKEPLPEEYGFLREGLILFT 91 (369)
T ss_dssp CCCCSSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECSSCCCGGGGGGCCTTCEEEE
T ss_pred CceeCcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEECCCCHHHHhhcCCCcEEEE
Confidence 366666667778888899999763211 1244333333 56 899999877544344556789988876
Q ss_pred EeeCCCccccCcchhhHHhhcCCeEEEEEe
Q 036415 323 VVPLGLEWASTNYYGAPTKEMGVQYLEYKI 352 (419)
Q Consensus 323 I~P~g~~~~~~~~y~~lA~~~gl~Y~~y~~ 352 (419)
....+. ....-......|+..+.|+.
T Consensus 92 ~~~~~~----~~~~~~~l~~~gi~~ia~e~ 117 (369)
T 2eez_A 92 YLHLAA----DRGLTEAMLRSGVTGIAYET 117 (369)
T ss_dssp CCCGGG----CHHHHHHHHHHTCEEEEGGG
T ss_pred EecccC----CHHHHHHHHHCCCeEEEeec
Confidence 654432 22233334567888887644
No 35
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=36.51 E-value=1e+02 Score=31.53 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCccccccccCCCcEEEEEEcCCCCcccCHHHHHHHHHHc---CCEEEEEc
Q 036415 224 KHFLRESYNLKIKNVSEIKREKPILILISRKKSRVVSNENEIVVMMEEL---GFEVVVTR 280 (419)
Q Consensus 224 ~~fLr~~y~l~~~~~~~~~~~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~---gf~v~~~e 280 (419)
+..|++.+++.. .+..|.+++++|-..+ .|.+.++++++++ +.+++++-
T Consensus 312 k~~l~~~~gl~~------d~~~p~i~~vgRl~~~--Kg~~~li~a~~~l~~~~~~l~l~G 363 (536)
T 3vue_A 312 KEALQAEAGLPV------DRKIPLIAFIGRLEEQ--KGPDVMAAAIPELMQEDVQIVLLG 363 (536)
T ss_dssp HHHHHHHTTSCC------CTTSCEEEEECCBSGG--GCHHHHHHHHHHHTTSSCEEEEEC
T ss_pred HHHHHHhcCCCC------CCCCcEEEEEeecccc--CChHHHHHHHHHhHhhCCeEEEEe
Confidence 345667777742 3578999999997544 4778888877763 66766653
No 36
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=36.22 E-value=1e+02 Score=28.76 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=49.6
Q ss_pred CCcEEEEEE--cCCCCccc--CHHHHHHHHHHcCCEEEEE-cC-------------------CCCCCHHHHHHHHhcCCE
Q 036415 244 EKPILILIS--RKKSRVVS--NENEIVVMMEELGFEVVVT-RP-------------------NRMSNLNKFAALVNSCSV 299 (419)
Q Consensus 244 ~~pr~~~i~--R~~~R~i~--Ne~ev~~~l~~~gf~v~~~-e~-------------------~~~~s~~eq~~l~~~adv 299 (419)
.++.+++.- |...|++- +-.|+++.|.+.|++++.+ .. ...+++.|-+++++.||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 345554432 22235555 4456666555558887764 11 013679999999999999
Q ss_pred EEEecchhhhhhhccCCCcEEEEEeeC
Q 036415 300 LVGAHGAGLTNQVFLPDGAVMVQVVPL 326 (419)
Q Consensus 300 lVgvHGAgLtn~lFm~pgs~vIEI~P~ 326 (419)
+||+= +|.+|+--+ =|+-+|-|+..
T Consensus 257 ~I~~D-SG~~HlAaa-~g~P~v~lfg~ 281 (326)
T 2gt1_A 257 VVSVD-TGLSHLTAA-LDRPNITVYGP 281 (326)
T ss_dssp EEEES-SHHHHHHHH-TTCCEEEEESS
T ss_pred EEecC-CcHHHHHHH-cCCCEEEEECC
Confidence 99995 344444333 46777777744
No 37
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=35.67 E-value=31 Score=33.63 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCC---------------CC------CCHHHHHHHHhcCCEEEE
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPN---------------RM------SNLNKFAALVNSCSVLVG 302 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~---------------~~------~s~~eq~~l~~~advlVg 302 (419)
..-++++|.|.+. +. .-+...|...|..|.+++-. .. .+..+..+.+.+|||+|+
T Consensus 176 ~gk~vvVIG~G~i---VG-~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 176 YGKKCIVINRSEI---VG-RPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TTCEEEEECCCTT---TH-HHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCcc---hH-HHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 4458899998742 11 12456666778888877431 10 112667788999999999
Q ss_pred ecchh--hhhhhccCCCcEEEEE
Q 036415 303 AHGAG--LTNQVFLPDGAVMVQV 323 (419)
Q Consensus 303 vHGAg--Ltn~lFm~pgs~vIEI 323 (419)
.-|+- +-..=|++||++||-+
T Consensus 252 Atg~p~~vI~~e~vk~GavVIDV 274 (320)
T 1edz_A 252 GVPSENYKFPTEYIKEGAVCINF 274 (320)
T ss_dssp CCCCTTCCBCTTTSCTTEEEEEC
T ss_pred CCCCCcceeCHHHcCCCeEEEEc
Confidence 99986 2333446899999988
No 38
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=35.52 E-value=29 Score=30.79 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhcCC--------EEEEecchhhhhhhccCCC
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNK---FAALVNSCS--------VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~e---q~~l~~~ad--------vlVgvHGAgLtn~lFm~pg 317 (419)
.+.|.+.++++||+|.+.+. ++..| .++-++.-| ++|--||-. +.++...|
T Consensus 71 ~~~L~~~F~~LgF~V~v~~d---lt~~em~~~l~~~s~~dh~~~dc~vvvilSHG~~--g~I~g~D~ 132 (173)
T 2ql9_A 71 AEALFKCFRSLGFDVIVYND---CSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 132 (173)
T ss_dssp HHHHHHHHHHHTEEEEEEES---CCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHHHHhhccCCCeEEEeecCCCCC--CEEEEcCC
Confidence 44667888889999988654 55554 444455555 566667753 56665555
No 39
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=35.41 E-value=57 Score=26.67 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=38.1
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH 304 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH 304 (419)
.-+++++.... ..+++.+.+++.|..+.. .. .+-.+..++++.||++|.+.
T Consensus 32 ~~~l~i~G~g~-----~~~~~~~~~~~~~~~v~~-g~---~~~~~~~~~~~~adv~v~ps 82 (166)
T 3qhp_A 32 DIVLLLKGKGP-----DEKKIKLLAQKLGVKAEF-GF---VNSNELLEILKTCTLYVHAA 82 (166)
T ss_dssp GEEEEEECCST-----THHHHHHHHHHHTCEEEC-CC---CCHHHHHHHHTTCSEEEECC
T ss_pred CeEEEEEeCCc-----cHHHHHHHHHHcCCeEEE-ee---cCHHHHHHHHHhCCEEEECC
Confidence 45777777543 357788888888886654 33 77888899999999998653
No 40
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=33.96 E-value=38 Score=32.05 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH---Hhc------CC---EEEEecchhhhhh
Q 036415 244 EKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAAL---VNS------CS---VLVGAHGAGLTNQ 311 (419)
Q Consensus 244 ~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l---~~~------ad---vlVgvHGAgLtn~ 311 (419)
++-..+||++.+ ...+.|.+.++++||+|.+.+. ++..|..+. ++. +| ++|.-||- -+.
T Consensus 42 ~rG~~LIinn~~----~D~~~L~~~f~~LgF~V~~~~d---lt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~--~g~ 112 (272)
T 3h11_A 42 PLGICLIIDCIG----NETELLRDTFTSLGYEVQKFLH---LSMHGISQILGQFACMPEHRDYDSFVCVLVSRGG--SQS 112 (272)
T ss_dssp SSEEEEEEESSC----CCCSHHHHHHHHHTEEEEEEES---CBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEE--TTE
T ss_pred cceEEEEECCch----HHHHHHHHHHHHCCCEEEEeeC---CCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCC--CCe
Confidence 455678999875 3566788999999999998654 665554433 332 23 46677886 366
Q ss_pred hccCCCc
Q 036415 312 VFLPDGA 318 (419)
Q Consensus 312 lFm~pgs 318 (419)
++...|.
T Consensus 113 i~g~D~~ 119 (272)
T 3h11_A 113 VYGVDQT 119 (272)
T ss_dssp ECBTSCC
T ss_pred EEEEcCC
Confidence 6666553
No 41
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=33.45 E-value=37 Score=31.52 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEecchhhhhhhccCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCS--------VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~ad--------vlVgvHGAgLtn~lFm~pg 317 (419)
..+.|.+.++++||+|.+.+.-....+.+.++-|+.-| +++.-||- -+.++...+
T Consensus 42 D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D~ 104 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecCC
Confidence 44567788889999998865422233444445554443 45556876 345554444
No 42
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=33.36 E-value=1.1e+02 Score=29.92 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred CCcccCHHHHHHHHHHcCCEEEEEcCC---CCCCHHHHH-----------HHHhcCCEEEEecchhhhhhhccCCCcEEE
Q 036415 256 SRVVSNENEIVVMMEELGFEVVVTRPN---RMSNLNKFA-----------ALVNSCSVLVGAHGAGLTNQVFLPDGAVMV 321 (419)
Q Consensus 256 ~R~i~Ne~ev~~~l~~~gf~v~~~e~~---~~~s~~eq~-----------~l~~~advlVgvHGAgLtn~lFm~pgs~vI 321 (419)
.||+.=..+-++.|.+.|++|.+-... ...+=+|.. +.+.+||+|+++-----.-...+.||..++
T Consensus 13 E~Rv~ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~vk~p~~~e~~~l~~~~~l~ 92 (377)
T 2vhw_A 13 EFRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILF 92 (377)
T ss_dssp CCCCSCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEECSSCCCGGGGGGCCTTCEEE
T ss_pred CcccCcCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEEeCCCChHHHhhcCCCCEEE
Confidence 366666667778888899999763211 123433332 467789999988755445566778886666
Q ss_pred EEeeCCCccccCcchhhHHhhcCCeEEEE
Q 036415 322 QVVPLGLEWASTNYYGAPTKEMGVQYLEY 350 (419)
Q Consensus 322 EI~P~g~~~~~~~~y~~lA~~~gl~Y~~y 350 (419)
=...... . ...-.-+...|++.+.|
T Consensus 93 ~~~~~~~---~-~~~l~~l~~~gi~~ia~ 117 (377)
T 2vhw_A 93 TFLHLAA---S-RACTDALLDSGTTSIAY 117 (377)
T ss_dssp ECCCGGG---C-HHHHHHHHHHTCEEEEG
T ss_pred EEecccC---C-HHHHHHHHHcCCeEEEe
Confidence 4432221 1 12223334568888766
No 43
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=33.31 E-value=32 Score=32.47 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhc-----CCE---EEEecchh
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNK---FAALVNS-----CSV---LVGAHGAG 307 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~e---q~~l~~~-----adv---lVgvHGAg 307 (419)
..+.|.+.++++||+|.+.+. ++..| .++-|+. +|. ++.-||-.
T Consensus 47 D~~~L~~~f~~LgF~V~~~~d---lt~~em~~~l~~~~~~~h~~~D~~vv~ilSHG~~ 101 (277)
T 1nw9_B 47 DCEKLRRRFSSLHFMVEVKGD---LTAKKMVLALLELARQDHGALDCCVVVILSHGCQ 101 (277)
T ss_dssp HHHHHHHHHHHTTEEEEEEES---CCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHHHHhhcccCCeEEEEEeCCCCc
Confidence 445677888899999988654 55444 4444432 342 34458864
No 44
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=32.55 E-value=45 Score=33.87 Aligned_cols=58 Identities=12% Similarity=0.322 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCEEEEEcCCC------------CCCHHHHHHHHhcCCEEEEecc-hhhhh-hhc--cCCCcEEEEEe
Q 036415 264 EIVVMMEELGFEVVVTRPNR------------MSNLNKFAALVNSCSVLVGAHG-AGLTN-QVF--LPDGAVMVQVV 324 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~------------~~s~~eq~~l~~~advlVgvHG-AgLtn-~lF--m~pgs~vIEI~ 324 (419)
.+++.|+.+|.+|++.+.+. ..++. +++..||++|..-| .++-+ -.| |++|+.||-+-
T Consensus 234 ~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Le---eal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 234 GCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLN---EVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMG 307 (435)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHH---HHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHH---HHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEec
Confidence 35566677777777765321 12333 36779999999755 23333 333 89999998774
No 45
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=32.36 E-value=60 Score=32.34 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=24.9
Q ss_pred HHHHHhcCCEEEEec---chh----hhhhhc--cCCCcEEEEEe
Q 036415 290 FAALVNSCSVLVGAH---GAG----LTNQVF--LPDGAVMVQVV 324 (419)
Q Consensus 290 q~~l~~~advlVgvH---GAg----Ltn~lF--m~pgs~vIEI~ 324 (419)
..+.+..|||+|+.. |+. ++.-++ |+||+++|-+-
T Consensus 259 l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 259 LEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 346789999999864 321 334444 89999999885
No 46
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=32.36 E-value=66 Score=30.19 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHhcCCEEEEecchhhhhh-h--ccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEEE
Q 036415 292 ALVNSCSVLVGAHGAGLTNQ-V--FLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYLE 349 (419)
Q Consensus 292 ~l~~~advlVgvHGAgLtn~-l--Fm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~~ 349 (419)
+++..||++|..-+.++.+- . .|+||+.+|.+---. ....+ ..++..|+.++.
T Consensus 211 ~~l~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~----~~~~~-~~a~~~G~~~i~ 266 (300)
T 2rir_A 211 EHVKDIDICINTIPSMILNQTVLSSMTPKTLILDLASRP----GGTDF-KYAEKQGIKALL 266 (300)
T ss_dssp HHSTTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTT----CSBCH-HHHHHHTCEEEE
T ss_pred HHhhCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCC----CCcCH-HHHHHCCCEEEE
Confidence 45789999999888877653 2 389999999885211 11224 677778887653
No 47
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=31.76 E-value=58 Score=27.53 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEE-EcCCCCCCHHHHHHHHhcCCEEEEec
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVV-TRPNRMSNLNKFAALVNSCSVLVGAH 304 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~-~e~~~~~s~~eq~~l~~~advlVgvH 304 (419)
..+++++..... ...+++.+.+++.+ .|.. ... .+-++..++++.||++|.+.
T Consensus 70 ~~~l~i~G~~~~---~~~~~l~~~~~~~~-~v~~~~g~---~~~~~~~~~~~~ad~~l~ps 123 (200)
T 2bfw_A 70 EMRFIIIGKGDP---ELEGWARSLEEKHG-NVKVITEM---LSREFVRELYGSVDFVIIPS 123 (200)
T ss_dssp GEEEEEECCBCH---HHHHHHHHHHHHCT-TEEEECSC---CCHHHHHHHHTTCSEEEECC
T ss_pred CeEEEEECCCCh---HHHHHHHHHHHhcC-CEEEEecc---CCHHHHHHHHHHCCEEEECC
Confidence 456777765321 12356667777778 5555 433 78889999999999998754
No 48
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=31.02 E-value=66 Score=28.88 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=46.0
Q ss_pred CcEEEEEEcCCC--CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhh
Q 036415 245 KPILILISRKKS--RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLT 309 (419)
Q Consensus 245 ~pr~~~i~R~~~--R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLt 309 (419)
.+|++||.=... ..-.|.+.+.+++++.|+++.+++... .+.++..+.+.+||.|+=+=|...+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~~ad~I~l~GG~~~~ 92 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-ESLGEITTKLRKNDFIYVTGGNTFF 92 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHHHSSEEEECCSCHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHHhCCEEEECCCCHHH
Confidence 479999963321 222477888999999999998876543 5667777889999999965565443
No 49
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=30.72 E-value=1.1e+02 Score=26.58 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=45.9
Q ss_pred CCCcEEEEEEcCCC-Cccc--CHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHHh---cCCEEEEecchhhhh
Q 036415 243 REKPILILISRKKS-RVVS--NENEIVVMMEELGFEVVVTR--PNRMSNLNKFAALVN---SCSVLVGAHGAGLTN 310 (419)
Q Consensus 243 ~~~pr~~~i~R~~~-R~i~--Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~l~~---~advlVgvHGAgLtn 310 (419)
.+++|+-+|+=.+. -++. |-.-+.+.|++.|+++.... +++.-.+.+.++... .+|+||.-=|.|.+.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 46788888775544 2344 44567799999999876432 333245666665543 399999999998775
No 50
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=30.63 E-value=44 Score=31.54 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEecchhhhhhhccCCC
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCS--------VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~ad--------vlVgvHGAgLtn~lFm~pg 317 (419)
.+.|.+.++++||+|.+.+.-....+.+.++-|+.-| +++.-||- -|.++...+
T Consensus 58 a~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~--~~~i~~~D~ 119 (272)
T 1m72_A 58 SDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE--LGMLYAKDT 119 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEECSSS
T ss_pred HHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CCEEEecCC
Confidence 4466788888999998876422233444455555443 45556874 566666655
No 51
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=29.88 E-value=56 Score=32.32 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhc
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVF 313 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lF 313 (419)
+.+.|||+=...+ -.+||-+++++.+++|+..+++ ...-+|+ +.+.||++||-++|-+|-.+.
T Consensus 279 ~lksVFIATDa~~---~~~ELk~~L~~~~v~vv~~~pe--~a~ID~~-I~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 279 GAKSVFVASDKDH---MIDEINEALKPYEIEAHRQEPD--DMYTSLA-IMGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp TCSEEEEEESSCC---CHHHHHHHHGGGTCCEECCSSC--CHHHHHH-HHHHSSEEEECTTCHHHHHHH
T ss_pred CCcEEEEecCCHH---HHHHHHHHhhccCceEEEeCCc--hhHHHHH-HHHhCCEeecCccccccHHHH
Confidence 3466788776556 4678888888888888877664 5566664 899999999999999987664
No 52
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=29.67 E-value=2e+02 Score=27.88 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=54.3
Q ss_pred CCcccCHHHHHHHHHHcCCEEEEEcCC---CCCCHHHHH-----------HHHhcCCEEEEecch-----hhhhhhccCC
Q 036415 256 SRVVSNENEIVVMMEELGFEVVVTRPN---RMSNLNKFA-----------ALVNSCSVLVGAHGA-----GLTNQVFLPD 316 (419)
Q Consensus 256 ~R~i~Ne~ev~~~l~~~gf~v~~~e~~---~~~s~~eq~-----------~l~~~advlVgvHGA-----gLtn~lFm~p 316 (419)
.||+.=..+.++.|.+.|++|.+-... ...+=.+.. +.+.+||++|.+.-- .-..+=.+++
T Consensus 13 E~Rv~l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~~p~~~~~~~~~i~~l~~ 92 (384)
T 1l7d_A 13 EDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKE 92 (384)
T ss_dssp CCCCSCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGGGSCCGGGGSCT
T ss_pred CcccCCCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEecCcccccCCHHHHHhhcc
Confidence 466655556777777899999763221 123333322 568899999998542 1123345788
Q ss_pred CcEEEEEeeCCCccccCcchhhHHhhcCCeEEEEE
Q 036415 317 GAVMVQVVPLGLEWASTNYYGAPTKEMGVQYLEYK 351 (419)
Q Consensus 317 gs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~~y~ 351 (419)
|..++-....+. + ...-..+...|+....|.
T Consensus 93 ~~~~i~~~~~~~---~-~~~~~~~~~~gi~~~~~e 123 (384)
T 1l7d_A 93 GAVLMCHLGALT---N-RPVVEALTKRKITAYAME 123 (384)
T ss_dssp TCEEEEECCGGG---C-HHHHHHHHHTTCEEEEGG
T ss_pred CCEEEEEecccC---C-HHHHHHHHHCCCEEEEec
Confidence 988885554432 1 222334456788776653
No 53
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=29.62 E-value=2.5e+02 Score=26.71 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=51.0
Q ss_pred CcEEEEEE--cCCCCccc--CHHHHHHHHHHcCCEEEEEcC---------------------CCCCCHHHHHHHHhcCCE
Q 036415 245 KPILILIS--RKKSRVVS--NENEIVVMMEELGFEVVVTRP---------------------NRMSNLNKFAALVNSCSV 299 (419)
Q Consensus 245 ~pr~~~i~--R~~~R~i~--Ne~ev~~~l~~~gf~v~~~e~---------------------~~~~s~~eq~~l~~~adv 299 (419)
+|.+++.- |...|++- +-.|+++.|.+.|++++.+-. ...+++.|.+++++.||+
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 44544432 22235554 566777777666888776421 113789999999999999
Q ss_pred EEEecchhhhhhhccCCCcEEEEEeeC
Q 036415 300 LVGAHGAGLTNQVFLPDGAVMVQVVPL 326 (419)
Q Consensus 300 lVgvHGAgLtn~lFm~pgs~vIEI~P~ 326 (419)
+||+= +|.+|+-- --|+-+|-||..
T Consensus 265 ~i~~D-sG~~HlAa-a~g~P~v~lfg~ 289 (349)
T 3tov_A 265 LITND-SGPMHVGI-SQGVPIVALYGP 289 (349)
T ss_dssp EEEES-SHHHHHHH-TTTCCEEEECSS
T ss_pred EEECC-CCHHHHHH-hcCCCEEEEECC
Confidence 99973 44455432 246777777744
No 54
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=28.81 E-value=2.2e+02 Score=26.99 Aligned_cols=66 Identities=21% Similarity=0.366 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEecchhhhhhhc----cCCCcEEEEEeeCC
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNKFAALV--NSCSVLVGAHGAGLTNQVF----LPDGAVMVQVVPLG 327 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~--~~advlVgvHGAgLtn~lF----m~pgs~vIEI~P~g 327 (419)
.+++.+.|++.|+++.+..........++++.. ..+|++|.+=|-|-.|.+- -.+...-|=++|.|
T Consensus 44 ~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 44 LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhCCCCCcEEEecCC
Confidence 357888888999988876554323444544433 4679999999988765543 13334567788999
No 55
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=28.73 E-value=51 Score=30.80 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEecchhhhhhhccCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCS--------VLVGAHGAGLTNQVFLPD 316 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~ad--------vlVgvHGAgLtn~lFm~p 316 (419)
..+.|.+.++++||+|.+.+.-....+.+.++-++.-| +++.-||-. +.++...
T Consensus 45 D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~~--g~i~~~D 106 (259)
T 3sir_A 45 DCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEM--GYIYAKD 106 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEEEEEEEECTTC--CCCCCTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEecCCCC--CeEEeCC
Confidence 45567788999999998876422233444555554433 456668865 5555443
No 56
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=28.66 E-value=47 Score=29.01 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=32.9
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC---EEEEe
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCS---VLVGA 303 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~ad---vlVgv 303 (419)
|++++|+-.+ .+ ...+++.+++.|.+++++... .+.++..+.+...+ +++..
T Consensus 1 ~~i~iiDn~~--s~--~~~i~~~l~~~G~~~~v~~~~--~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 1 ADILLLDNID--SF--TWNLADQLRTNGHNVVIYRNH--IPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp CEEEEEECSC--SS--HHHHHHHHHHTTCEEEEEETT--SCSHHHHHHHTTCSSEEEEECC
T ss_pred CcEEEEECCc--cH--HHHHHHHHHHCCCeEEEEECC--CCHHHHHHHhhhccCCeEEECC
Confidence 5788888322 22 234688889999999887654 45555545555444 66655
No 57
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=28.52 E-value=1.3e+02 Score=28.00 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=35.3
Q ss_pred hcCCEEEEecchhhhhh------hccCCCcEEEEEeeCCCccccCcchhhHHhhcCCe
Q 036415 295 NSCSVLVGAHGAGLTNQ------VFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 295 ~~advlVgvHGAgLtn~------lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
..+|+||..-.+|+..- =+++++++|+.++ +++ ..+.|-..|+..|++
T Consensus 180 ~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~Dlv---Y~P-~~T~ll~~A~~~G~~ 233 (272)
T 3pwz_A 180 QSFDIVVNATSASLTADLPPLPADVLGEAALAYELA---YGK-GLTPFLRLAREQGQA 233 (272)
T ss_dssp CCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESS---CSC-CSCHHHHHHHHHSCC
T ss_pred cCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEee---cCC-CCCHHHHHHHHCCCC
Confidence 68999999998887532 2467889999885 222 235687888889986
No 58
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=27.92 E-value=81 Score=32.01 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCC------------CCCHHHHHHHHhcCCEEEEecch-hhhh-h
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNR------------MSNLNKFAALVNSCSVLVGAHGA-GLTN-Q 311 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~------------~~s~~eq~~l~~~advlVgvHGA-gLtn-~ 311 (419)
-+++++.-..- =..+++.|+.+|.+|++.+... ..++ -+++..|||+|..-|. ++.+ -
T Consensus 212 ktVgIiG~G~I-----G~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL---~eal~~ADVVilt~gt~~iI~~e 283 (436)
T 3h9u_A 212 KTACVCGYGDV-----GKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLV---EDVVEEAHIFVTTTGNDDIITSE 283 (436)
T ss_dssp CEEEEECCSHH-----HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCH---HHHTTTCSEEEECSSCSCSBCTT
T ss_pred CEEEEEeeCHH-----HHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCH---HHHHhhCCEEEECCCCcCccCHH
Confidence 36677764321 2256788888999998877631 0122 3467899999986654 3333 3
Q ss_pred hc--cCCCcEEEEEeeCC
Q 036415 312 VF--LPDGAVMVQVVPLG 327 (419)
Q Consensus 312 lF--m~pgs~vIEI~P~g 327 (419)
.| |++|+.||-+-+..
T Consensus 284 ~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 284 HFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp TGGGCCTTEEEEECSSSG
T ss_pred HHhhcCCCcEEEEeCCCC
Confidence 34 89999999875433
No 59
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=27.91 E-value=57 Score=29.02 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh---cCC--------EEEEecchhhhhhhccCCCc
Q 036415 262 ENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVN---SCS--------VLVGAHGAGLTNQVFLPDGA 318 (419)
Q Consensus 262 e~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~---~ad--------vlVgvHGAgLtn~lFm~pgs 318 (419)
.+.|.+.++++||+|.+.+. ++..|..+.+. .-| ++|--||- -+.++...|.
T Consensus 71 ~~~L~~~F~~LGF~V~~~~d---lt~~em~~~l~~~~~~dh~~~dc~vvvilSHG~--~g~I~g~D~~ 133 (179)
T 3p45_A 71 RDNLTRRFSDLGFEVKCFND---LKAEELLLKIHEVSTVSHADADCFVCVFLSHGE--GNHIYAYDAK 133 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHTSCCTTBSCEEEEEESCEE--TTEEECSSSE
T ss_pred HHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHHhhhhcCCCCEEEEEEeccCC--CCEEEEECCE
Confidence 44677888889999998754 66665544443 322 45666775 3666666654
No 60
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=27.91 E-value=66 Score=27.83 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=44.9
Q ss_pred CCcEEEEEEcCCC-----CcccCHHHHHHHHHHcCCEEEEE--cCCCCCCHHHHHHHH--hcCCEEEEecchhhhh
Q 036415 244 EKPILILISRKKS-----RVVSNENEIVVMMEELGFEVVVT--RPNRMSNLNKFAALV--NSCSVLVGAHGAGLTN 310 (419)
Q Consensus 244 ~~pr~~~i~R~~~-----R~i~Ne~ev~~~l~~~gf~v~~~--e~~~~~s~~eq~~l~--~~advlVgvHGAgLtn 310 (419)
++||+-+|+=.+. +.=.|-.-+.++|++.|++++.. -+++ -.+.+.++.. ..+|+||.-=|.|.+-
T Consensus 6 ~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 6 TTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp -CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 5678877775442 44456678889999999988632 2444 5566666543 3799999999988765
No 61
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.68 E-value=1.5e+02 Score=25.23 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEE
Q 036415 243 REKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVN--SCSVL 300 (419)
Q Consensus 243 ~~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~--~advl 300 (419)
.++|++++..=.+.-.=+...-+..+|+..||+|+.+.. +.+.++.++... ++|++
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~--~~p~e~lv~aa~~~~~diV 73 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL--RQTPEQVAMAAVQEDVDVI 73 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS--BCCHHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEE
Confidence 467887776555544444445566788889999998654 388888777776 45544
No 62
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=26.60 E-value=1.7e+02 Score=25.40 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=45.6
Q ss_pred CCCcEEEEEEcCC----------CCcccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHH-Hhc--CCEEEEecchh
Q 036415 243 REKPILILISRKK----------SRVVSNENEIVVMMEELGFEVVVTR--PNRMSNLNKFAAL-VNS--CSVLVGAHGAG 307 (419)
Q Consensus 243 ~~~pr~~~i~R~~----------~R~i~Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~l-~~~--advlVgvHGAg 307 (419)
.++||+-+|+=.+ ...=.|-.-+.+.|++.|++++... +++.-.+.+.++- ..+ +|+||.-=|.|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4678888877553 2334455677899999999987532 3332345565543 444 89999998888
Q ss_pred hhh
Q 036415 308 LTN 310 (419)
Q Consensus 308 Ltn 310 (419)
.+.
T Consensus 93 ~g~ 95 (178)
T 2pjk_A 93 YSP 95 (178)
T ss_dssp SST
T ss_pred CCC
Confidence 765
No 63
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=26.51 E-value=41 Score=31.77 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=32.6
Q ss_pred hcCCEEEEecchhhhhh------hccCCCcEEEEEeeCCCccccCcchhhHHhhcCCe
Q 036415 295 NSCSVLVGAHGAGLTNQ------VFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 295 ~~advlVgvHGAgLtn~------lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
..+|+||..-++|+..- =+++||++|+.++- .+ ..+.+-..|+..|++
T Consensus 186 ~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY---~P-~~T~ll~~A~~~G~~ 239 (281)
T 3o8q_A 186 QSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMY---GK-GYTVFNQWARQHGCA 239 (281)
T ss_dssp SCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCC---CS-SCCHHHHHHHHTTCS
T ss_pred CCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecC---CC-ccCHHHHHHHHCCCC
Confidence 68999999888886431 23567888888852 22 235577788888986
No 64
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=26.36 E-value=42 Score=32.31 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhcC-----C---EEEEecchhhhhhhccCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNK---FAALVNSC-----S---VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~e---q~~l~~~a-----d---vlVgvHGAgLtn~lFm~pg 317 (419)
..+.|.+.++++||+|.+.+. ++..| .++-++.- | +++.-||-- |.|+...+
T Consensus 95 Da~~L~~~f~~LGF~V~~~~d---lt~~em~~~l~~~~~~~h~~~d~~vv~ilsHG~~--~~i~g~D~ 157 (305)
T 1f1j_A 95 DAEALFKCFRSLGFDVIVYND---CSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 157 (305)
T ss_dssp HHHHHHHHHHHHTEEEEEEES---CCHHHHHHHHHHHHHSCGGGEEEEEEEEESCEET--TEEECSSS
T ss_pred HHHHHHHHHHHCCCEEEEecC---cCHHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC--CeEEecCC
Confidence 344677888899999988654 55444 44444333 3 455558853 55555554
No 65
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=26.25 E-value=63 Score=28.55 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=27.4
Q ss_pred CcEEEEEEcCCC-----Cc--ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH
Q 036415 245 KPILILISRKKS-----RV--VSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAAL 293 (419)
Q Consensus 245 ~pr~~~i~R~~~-----R~--i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l 293 (419)
+-..+||.-..- |. ....+.|.+.++++||+|.+.+. ++..|..+.
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~d---lt~~em~~~ 95 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKN---LTASDMTTE 95 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEES---CCHHHHHHH
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecC---CCHHHHHHH
Confidence 334566665542 32 23344667888889999988654 565554443
No 66
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=26.20 E-value=65 Score=31.09 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEecchhhhhhhccCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCS--------VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~ad--------vlVgvHGAgLtn~lFm~pg 317 (419)
..+.|.+.++++||+|.+.+.-....+.+.++-|+.-| +++.-||- -|.|+...+
T Consensus 85 Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ilSHG~--~g~i~g~D~ 147 (310)
T 2nn3_C 85 DSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGE--LGMLYAKDT 147 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEEEEEEEE--TTEEECSSC
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CCEEEecCC
Confidence 34466788888999998875422223444455554443 34555885 566666555
No 67
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=25.92 E-value=70 Score=30.08 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhc-----CC---EEEEecchhhhhhhccCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNK---FAALVNS-----CS---VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~e---q~~l~~~-----ad---vlVgvHGAgLtn~lFm~pg 317 (419)
..+.|.+.++++||+|.+.+. ++..| .++-|+. +| +++.-||-. |.++...|
T Consensus 50 D~~~L~~~f~~LGF~V~~~~d---lt~~em~~~l~~~~~~~h~~~d~~v~~ilSHG~~--g~i~g~D~ 112 (271)
T 3h11_B 50 DAGALTTTFEELHFEIKPHDD---CTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDG 112 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTS
T ss_pred HHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHHHHhcCCCCCEEEEEEEcCCcC--CEEEecCC
Confidence 345677888899999988754 55554 3444433 33 344558763 66666665
No 68
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=24.67 E-value=1.6e+02 Score=26.84 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=51.8
Q ss_pred EEEEEEcCCC-CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHH-----------HHHHhcCCEEEEecchhhh----h
Q 036415 247 ILILISRKKS-RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKF-----------AALVNSCSVLVGAHGAGLT----N 310 (419)
Q Consensus 247 r~~~i~R~~~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq-----------~~l~~~advlVgvHGAgLt----n 310 (419)
++++|...+. | .++..|.+.|++|.+.+... ...++. -++ .++|++|..-+.++. .
T Consensus 118 ~v~iiG~G~~g~------~~a~~l~~~g~~v~v~~r~~-~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~ 189 (263)
T 2d5c_A 118 PALVLGAGGAGR------AVAFALREAGLEVWVWNRTP-QRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSAS 189 (263)
T ss_dssp CEEEECCSHHHH------HHHHHHHHTTCCEEEECSSH-HHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred eEEEECCcHHHH------HHHHHHHHCCCEEEEEECCH-HHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence 6777765432 2 23455556676666654321 001111 123 789999999998863 1
Q ss_pred ---hhccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeEE
Q 036415 311 ---QVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQYL 348 (419)
Q Consensus 311 ---~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y~ 348 (419)
.-++++|+.|+++. +.+. .+-+...|+..|++++
T Consensus 190 ~l~~~~l~~g~~viD~~---~~p~-~t~l~~~a~~~g~~~v 226 (263)
T 2d5c_A 190 PLPAELFPEEGAAVDLV---YRPL-WTRFLREAKAKGLKVQ 226 (263)
T ss_dssp SSCGGGSCSSSEEEESC---CSSS-SCHHHHHHHHTTCEEE
T ss_pred CCCHHHcCCCCEEEEee---cCCc-ccHHHHHHHHCcCEEE
Confidence 23578999999864 2221 2235566777787654
No 69
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=23.86 E-value=33 Score=32.30 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEec-ch---------hhhhhhcc
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAH-GA---------GLTNQVFL 314 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvH-GA---------gLtn~lFm 314 (419)
-+|++||. ++.-=.-.+.+.++|++.||+|.++++.. . .+....++..|+||=.. ++ +|.. |.
T Consensus 4 m~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~~~-~--~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~--yV 76 (259)
T 3rht_A 4 MTRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPSHV-G--LDVGELLAKQDLVILSDYPAERMTAQAIDQLVT--MV 76 (259)
T ss_dssp --CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECTTS-C--BCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHH--HH
T ss_pred CceEEEEC--CCCchhHHHHHHHHHHhCCceEEEecccc-c--ccChhHHhcCCEEEEcCCccccCCHHHHHHHHH--HH
Confidence 35788884 33322334557789999999999987743 2 22234678999998763 32 2333 33
Q ss_pred CCCcEEEEEe
Q 036415 315 PDGAVMVQVV 324 (419)
Q Consensus 315 ~pgs~vIEI~ 324 (419)
..|..+|=+-
T Consensus 77 ~~GGgLi~~g 86 (259)
T 3rht_A 77 KAGCGLVMLG 86 (259)
T ss_dssp HTTCEEEEEC
T ss_pred HhCCeEEEec
Confidence 5688888664
No 70
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=23.69 E-value=63 Score=30.51 Aligned_cols=53 Identities=21% Similarity=0.405 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHH---HHHhcC-----C---EEEEecchhhhhhhccCCCc
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFA---ALVNSC-----S---VLVGAHGAGLTNQVFLPDGA 318 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~---~l~~~a-----d---vlVgvHGAgLtn~lFm~pgs 318 (419)
..+.|.+.++++||+|.+.+. ++..|.. +-++.- | +++.-||-. +.++...|.
T Consensus 47 D~~~L~~~f~~LGF~V~~~~d---lt~~em~~~l~~~~~~~h~~~d~~vv~ilSHG~~--g~i~g~D~~ 110 (278)
T 3od5_A 47 DRDNLTRRFSDLGFEVKCFND---LKAEELLLKIHEVSTVSHADADCFVCVFLSHGEG--NHIYAYDAK 110 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHHSCCTTBSCEEEEEESCEET--TEEECSSSE
T ss_pred HHHHHHHHHHHCCCEEEEecC---CCHHHHHHHHHHHHhhcccCCCEEEEEEECCCCC--CEEEEeCCe
Confidence 345677888899999998754 6655443 333332 3 344558863 666666554
No 71
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=23.69 E-value=3.2e+02 Score=25.18 Aligned_cols=70 Identities=10% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHHcCCCccccccccCCCcEEEEEEcCCCCcccCHHHHHHHHHHc-----CCEEEEEcCCC---------------
Q 036415 224 KHFLRESYNLKIKNVSEIKREKPILILISRKKSRVVSNENEIVVMMEEL-----GFEVVVTRPNR--------------- 283 (419)
Q Consensus 224 ~~fLr~~y~l~~~~~~~~~~~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~-----gf~v~~~e~~~--------------- 283 (419)
+.-+++.++++ ..++.++++.|-.. -.|.+.++++++++ +++++++....
T Consensus 185 ~~~~~~~~~~~--------~~~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~ 254 (394)
T 3okp_A 185 KSATRKKLGFT--------DTTPVIACNSRLVP--RKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQN 254 (394)
T ss_dssp HHHHHHHTTCC--------TTCCEEEEESCSCG--GGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGG
T ss_pred hHHHHHhcCCC--------cCceEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCe
Confidence 34556666652 34578999988643 34677777766542 56666653211
Q ss_pred -----CCCHHHHHHHHhcCCEEEEe
Q 036415 284 -----MSNLNKFAALVNSCSVLVGA 303 (419)
Q Consensus 284 -----~~s~~eq~~l~~~advlVgv 303 (419)
..+-+|-.++++.||++|.+
T Consensus 255 v~~~g~~~~~~~~~~~~~ad~~v~p 279 (394)
T 3okp_A 255 VKFLGRLEYQDMINTLAAADIFAMP 279 (394)
T ss_dssp EEEEESCCHHHHHHHHHHCSEEEEC
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEec
Confidence 13446677778888887765
No 72
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=23.33 E-value=54 Score=24.96 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.3
Q ss_pred CcccCHHHHHHHHHHcCCEEE
Q 036415 257 RVVSNENEIVVMMEELGFEVV 277 (419)
Q Consensus 257 R~i~Ne~ev~~~l~~~gf~v~ 277 (419)
++=+|.+++++.|++.||+|+
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 445789999999999999996
No 73
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=22.50 E-value=1.5e+02 Score=26.69 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=40.6
Q ss_pred CCCcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEecchh
Q 036415 243 REKPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSV-LVGAHGAG 307 (419)
Q Consensus 243 ~~~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~adv-lVgvHGAg 307 (419)
..++++++-.=.+--.=+-..-+..+|+..||+|+.+.. +.|.++.++....-+. +||+-||+
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~--~vp~e~iv~~~~~~~~d~v~l~~S~ 153 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV--DVLNENVVEEAAKHKGEKVLLVGSA 153 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS--SCCHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC--CCCHHHHHHHHHHcCCCEEEEEchh
Confidence 456788776655554444445567788899999998654 4899888766655433 35563433
No 74
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.32 E-value=1.8e+02 Score=24.92 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=44.7
Q ss_pred CCCcEEEEEEcCCC-Cccc--CHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH-h--cCCEEEEecchhhhh
Q 036415 243 REKPILILISRKKS-RVVS--NENEIVVMMEELGFEVVVTR--PNRMSNLNKFAALV-N--SCSVLVGAHGAGLTN 310 (419)
Q Consensus 243 ~~~pr~~~i~R~~~-R~i~--Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~l~-~--~advlVgvHGAgLtn 310 (419)
.++||+-+|+=.+. -++. |-.-+.+.|++.|+++.... +++.-.+.+.++.. . ++|+||.-=|.|.+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 86 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITK 86 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSST
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 35678877775443 2344 55577889999999876432 33223566666544 4 699999999998763
No 75
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.28 E-value=77 Score=25.25 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=32.8
Q ss_pred EEEEEcCCC-CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEE---ecchhh
Q 036415 248 LILISRKKS-RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVG---AHGAGL 308 (419)
Q Consensus 248 ~~~i~R~~~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVg---vHGAgL 308 (419)
++|-|+.++ +++.. ++.+.+++.|+++..++..+ .+. ..+.++|.+|= ++|.|.
T Consensus 4 iiy~S~tGnT~~~a~--~i~~~l~~~g~~v~~~~~~~-~~~----~~l~~~d~vi~g~p~y~~~~ 61 (137)
T 2fz5_A 4 IVYWSGTGNTEAMAN--EIEAAVKAAGADVESVRFED-TNV----DDVASKDVILLGCPAMGSEE 61 (137)
T ss_dssp EEECCSSSHHHHHHH--HHHHHHHHTTCCEEEEETTS-CCH----HHHHTCSEEEEECCCBTTTB
T ss_pred EEEECCCChHHHHHH--HHHHHHHhCCCeEEEEEccc-CCH----HHHhcCCEEEEEccccCCCC
Confidence 566677654 65553 46666667788888776654 443 23567787653 354443
No 76
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=21.82 E-value=93 Score=27.62 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=47.9
Q ss_pred cCCCcEEEEEEcCCC----CcccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH--hcCCEEEEecchhhhhh
Q 036415 242 KREKPILILISRKKS----RVVSNENEIVVMMEELGFEVVVTR--PNRMSNLNKFAALV--NSCSVLVGAHGAGLTNQ 311 (419)
Q Consensus 242 ~~~~pr~~~i~R~~~----R~i~Ne~ev~~~l~~~gf~v~~~e--~~~~~s~~eq~~l~--~~advlVgvHGAgLtn~ 311 (419)
..++||+-+|+=.+. +.=.|-.-+.+.|++.|+++.... +++.-.+.+.++.. ..+|+||.-=|.|.+.-
T Consensus 27 ~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~ 104 (185)
T 3rfq_A 27 ELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPR 104 (185)
T ss_dssp --CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred CCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCc
Confidence 357889888875432 244577788899999999886432 33324466666544 57999999999997653
No 77
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=21.72 E-value=34 Score=35.36 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCcEEEEEEcCC--CCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecc-hhhhhhhccC--CCc
Q 036415 244 EKPILILISRKK--SRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHG-AGLTNQVFLP--DGA 318 (419)
Q Consensus 244 ~~pr~~~i~R~~--~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHG-AgLtn~lFm~--pgs 318 (419)
.++++-+|.=.. ...--|..|+.++|+++|.+++.+-+.. .+++| ++-+.+|++-|.++- +|..-.=+|. =|.
T Consensus 152 ~~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pgg-~t~~e-i~~~~~A~~niv~~~~~g~~~A~~Le~r~Gi 229 (525)
T 3aek_B 152 PEVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPLG-ASPDD-LRKLGQAHFNVLMYPETGESAARHLERACKQ 229 (525)
T ss_dssp SSCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEETT-CCHHH-HHTGGGSSEEEECCHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCCC-CCHHH-HHhhccCCEEEEEChhhHHHHHHHHHHHcCC
Confidence 456777776432 1223466789999999999998754543 67655 467888888888763 4444444443 356
Q ss_pred EEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 319 VMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 319 ~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
-.++..|.|++- ...+.+.+|+..|...
T Consensus 230 P~i~~~PiG~~~-T~~~Lr~ia~~~g~~~ 257 (525)
T 3aek_B 230 PFTKIVPIGVGA-TRDFLAEVSKITGLPV 257 (525)
T ss_dssp CBCCCCCCSHHH-HHHHHHHHHHHHCCCC
T ss_pred CceecCCcCHHH-HHHHHHHHHHHHCCCH
Confidence 666678999653 4568999999999864
No 78
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=21.70 E-value=1.2e+02 Score=26.16 Aligned_cols=39 Identities=10% Similarity=0.345 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC-CC-----HHHHHHHHhcCCEEEEe
Q 036415 263 NEIVVMMEELGFEVVVTRPNRM-SN-----LNKFAALVNSCSVLVGA 303 (419)
Q Consensus 263 ~ev~~~l~~~gf~v~~~e~~~~-~s-----~~eq~~l~~~advlVgv 303 (419)
+++.+.|++.|++|.. |..+ .+ +..=++.+.+||++|+.
T Consensus 30 ~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ 74 (161)
T 2f62_A 30 NKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIAD 74 (161)
T ss_dssp HHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 5678888889998754 4321 12 33336889999999886
No 79
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=21.49 E-value=1.9e+02 Score=27.40 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=38.6
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhh
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLT 309 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLt 309 (419)
+-++.++.+.+.. .+++.+.|++.|+++.+.+... +.+..+|++|.+=|-|..
T Consensus 29 ~mki~iv~~~~~~----~~~l~~~L~~~g~~v~~~~~~~--------~~~~~~DlvIvlGGDGT~ 81 (278)
T 1z0s_A 29 GMRAAVVYKTDGH----VKRIEEALKRLEVEVELFNQPS--------EELENFDFIVSVGGDGTI 81 (278)
T ss_dssp -CEEEEEESSSTT----HHHHHHHHHHTTCEEEEESSCC--------GGGGGSSEEEEEECHHHH
T ss_pred ceEEEEEeCCcHH----HHHHHHHHHHCCCEEEEccccc--------cccCCCCEEEEECCCHHH
Confidence 3467888876544 7789999999999998754321 134689999999887754
No 80
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.41 E-value=42 Score=34.05 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=68.8
Q ss_pred CCCcEEEEEE-cCCCCcccCHHHHHHHHHHcCCEEEEEcC------------------CCCCCHHHHHHHHhcCCEEEEe
Q 036415 243 REKPILILIS-RKKSRVVSNENEIVVMMEELGFEVVVTRP------------------NRMSNLNKFAALVNSCSVLVGA 303 (419)
Q Consensus 243 ~~~pr~~~i~-R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~------------------~~~~s~~eq~~l~~~advlVgv 303 (419)
.+++++-+|. =. ----+..|+.++|+++|++++.+-. ..+.++ ++++-+.+|++-|.+
T Consensus 167 ~~~~~VNii~G~~--~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg~~~-~ei~~~~~A~~ni~~ 243 (458)
T 3pdi_B 167 KRPRQVNVLCSAN--LTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGGLSV-AELATAGQSVATLVV 243 (458)
T ss_dssp CCSSEEEEEECTT--CCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCSBCH-HHHGGGSSCSCEEEE
T ss_pred CCCCeEEEEeCCC--CChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCCCCH-HHHHhhhhCcEEEEe
Confidence 4566777883 21 2234567889999999999987621 112355 556778888888888
Q ss_pred cchhhhhhhccC--CCcEEEEE-eeCCCccccCcchhhHHhhcCCe
Q 036415 304 HGAGLTNQVFLP--DGAVMVQV-VPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 304 HGAgLtn~lFm~--pgs~vIEI-~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
+.++..-.-+|. -|.-.+++ .|.|++. ...+.+.+|+..|..
T Consensus 244 ~~~~~~~A~~Le~~~GiP~~~~~~p~G~~~-T~~~l~~la~~~g~~ 288 (458)
T 3pdi_B 244 GQSLAGAADALAERTGVPDRRFGMLYGLDA-VDAWLMALAEISGNP 288 (458)
T ss_dssp SGGGHHHHHHHHHHSCCCEEEECCSCHHHH-HHHHHHHHHHHHSSC
T ss_pred cHHHHHHHHHHHHHHCCCEEecCCCcCHHH-HHHHHHHHHHHHCCc
Confidence 887655455553 47888887 6888653 456889999999874
No 81
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=21.39 E-value=2.7e+02 Score=26.11 Aligned_cols=91 Identities=10% Similarity=0.195 Sum_probs=54.7
Q ss_pred cEEEEEEcCCCCcccCHHHHHHHHHHcCC-EEEEEcCCC-----------CCCHHHHHHHHhcCCEEEEecchhhhh---
Q 036415 246 PILILISRKKSRVVSNENEIVVMMEELGF-EVVVTRPNR-----------MSNLNKFAALVNSCSVLVGAHGAGLTN--- 310 (419)
Q Consensus 246 pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf-~v~~~e~~~-----------~~s~~eq~~l~~~advlVgvHGAgLtn--- 310 (419)
-+++++.-.+. -..++..|.+.|+ +|.++.-.. ..++.+.-+ + .+|+||..-.+|+..
T Consensus 123 k~vlvlGaGGa-----araia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~ 195 (282)
T 3fbt_A 123 NICVVLGSGGA-----ARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEG 195 (282)
T ss_dssp SEEEEECSSTT-----HHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTT
T ss_pred CEEEEECCcHH-----HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCc
Confidence 35666665543 1245556666676 666553210 011222222 3 899999988888742
Q ss_pred -----hhccCCCcEEEEEeeCCCccccCcchhhHHhhcCCeE
Q 036415 311 -----QVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGVQY 347 (419)
Q Consensus 311 -----~lFm~pgs~vIEI~P~g~~~~~~~~y~~lA~~~gl~Y 347 (419)
.-+++++++|++++ +++ ..+.|-..|+..|++.
T Consensus 196 ~~pi~~~~l~~~~~v~Dlv---Y~P-~~T~ll~~A~~~G~~~ 233 (282)
T 3fbt_A 196 ESPVDKEVVAKFSSAVDLI---YNP-VETLFLKYARESGVKA 233 (282)
T ss_dssp CCSSCHHHHTTCSEEEESC---CSS-SSCHHHHHHHHTTCEE
T ss_pred cCCCCHHHcCCCCEEEEEe---eCC-CCCHHHHHHHHCcCeE
Confidence 22467889999985 222 3467888999999764
No 82
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=21.32 E-value=82 Score=29.76 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcC-----C---EEEEecchhhhhhhccCCC
Q 036415 261 NENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSC-----S---VLVGAHGAGLTNQVFLPDG 317 (419)
Q Consensus 261 Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~a-----d---vlVgvHGAgLtn~lFm~pg 317 (419)
..+.|.+.++++||+|.+.+.-....+.+.++-|+.- | +++.-||-. +.++...+
T Consensus 70 D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~ilSHG~~--g~i~g~D~ 132 (277)
T 4ehd_A 70 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEE--GIIFGTNG 132 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEEEcCCCC--CEEEEeCC
Confidence 3456778888999999886542222344444555443 3 244558865 66666655
No 83
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=21.22 E-value=80 Score=30.39 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCC-CcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEE
Q 036415 245 KPILILISRKKS-RVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVG 302 (419)
Q Consensus 245 ~pr~~~i~R~~~-R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVg 302 (419)
+.-+++.|..++ +++.+ ++.+.+++.|+++..++... .+..+....+.++|.+|=
T Consensus 258 k~~i~~~S~~gnT~~la~--~i~~~l~~~g~~v~~~~~~~-~~~~~~~~~l~~~d~iii 313 (404)
T 2ohh_A 258 RVTVIYDTMHGSTRKMAH--AIAEGAMSEGVDVRVYCLHE-DDRSEIVKDILESGAIAL 313 (404)
T ss_dssp EEEEEECCSSSHHHHHHH--HHHHHHHTTTCEEEEEETTT-SCHHHHHHHHHTCSEEEE
T ss_pred cEEEEEECCChHHHHHHH--HHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHHCCEEEE
Confidence 344555555442 44433 34455555689998887765 778888888999998874
No 84
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=21.17 E-value=84 Score=27.42 Aligned_cols=69 Identities=17% Similarity=0.322 Sum_probs=38.9
Q ss_pred CCcEEEEEEcCCC--------Cccc--CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHH---HHhc------CC---EEE
Q 036415 244 EKPILILISRKKS--------RVVS--NENEIVVMMEELGFEVVVTRPNRMSNLNKFAA---LVNS------CS---VLV 301 (419)
Q Consensus 244 ~~pr~~~i~R~~~--------R~i~--Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~---l~~~------ad---vlV 301 (419)
++-..+||+-.+- |.=. ..+.|.+.++++||+|.+.+. ++..|..+ -++. +| ++|
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~d---lt~~em~~~l~~~~~~~dh~~~dc~vv~i 108 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCD---QTAQEMQEKLQNFAQLPAHRVTDSCIVAL 108 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEES---CCHHHHHHHHHHHHTCGGGGTSSEEEEEE
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeC---CCHHHHHHHHHHhhhhhhccCCCEEEEEe
Confidence 3455667765531 3222 344667888889999988654 66555433 3333 23 244
Q ss_pred EecchhhhhhhccCCC
Q 036415 302 GAHGAGLTNQVFLPDG 317 (419)
Q Consensus 302 gvHGAgLtn~lFm~pg 317 (419)
--||-. +.++...|
T Consensus 109 lSHG~~--g~i~g~D~ 122 (167)
T 1pyo_A 109 LSHGVE--GAIYGVDG 122 (167)
T ss_dssp ESCEET--TEEECTTS
T ss_pred CCCCCC--CeEEEeCC
Confidence 456654 55665554
No 85
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=20.94 E-value=65 Score=31.06 Aligned_cols=71 Identities=18% Similarity=0.436 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCC------Ccc--cCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHH---HHHh------cCC---EEEEec
Q 036415 245 KPILILISRKKS------RVV--SNENEIVVMMEELGFEVVVTRPNRMSNLNKFA---ALVN------SCS---VLVGAH 304 (419)
Q Consensus 245 ~pr~~~i~R~~~------R~i--~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~---~l~~------~ad---vlVgvH 304 (419)
+-..+||.-.+- |.= ...+.|.+.++++||+|.+.+. ++..|.. +-|+ .+| +++.-|
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~d---lt~~em~~~l~~f~~~~h~~~~D~~vv~ilSH 137 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGN---VNQDQFFKLLTMVTSSSYVQNTECFVMVLMTH 137 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECS---CCHHHHHHHHHHHHTSHHHHTCSCEEEEEESC
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccC---CCHHHHHHHHHHHHHHhhcCCCCEEEEEEccC
Confidence 444566665431 221 3344677888899999988654 5555433 3332 344 445557
Q ss_pred chhhh--hhhccCCCc
Q 036415 305 GAGLT--NQVFLPDGA 318 (419)
Q Consensus 305 GAgLt--n~lFm~pgs 318 (419)
|-..- |.|+...|.
T Consensus 138 G~~~~g~g~i~g~D~~ 153 (316)
T 2fp3_A 138 GNSVEGKEKVEFRDGS 153 (316)
T ss_dssp EECCTTCCEEECTTSC
T ss_pred CCccCCCCEEEeecCc
Confidence 74321 566665553
No 86
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=20.68 E-value=1.2e+02 Score=30.00 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHH--------------------------------------HHHHHhcCCEEEEecc
Q 036415 264 EIVVMMEELGFEVVVTRPNRMSNLNK--------------------------------------FAALVNSCSVLVGAHG 305 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~~s~~e--------------------------------------q~~l~~~advlVgvHG 305 (419)
.+++.++.+|.+|++.+... ...++ ..+++..+||+|+..+
T Consensus 186 ~aa~~a~~~Ga~V~v~D~~~-~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~ 264 (401)
T 1x13_A 186 AAIGAANSLGAIVRAFDTRP-EVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTAL 264 (401)
T ss_dssp HHHHHHHHTTCEEEEECSCG-GGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCC
T ss_pred HHHHHHHHCCCEEEEEcCCH-HHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCc
Q ss_pred h-h------hhhhhc--cCCCcEEEEE
Q 036415 306 A-G------LTNQVF--LPDGAVMVQV 323 (419)
Q Consensus 306 A-g------Ltn~lF--m~pgs~vIEI 323 (419)
. | ++.-++ |+||++||-+
T Consensus 265 ~pg~~ap~li~~~~l~~mk~g~vIVdv 291 (401)
T 1x13_A 265 IPGKPAPKLITREMVDSMKAGSVIVDL 291 (401)
T ss_dssp CTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred cCCCCCCeeeCHHHHhcCCCCcEEEEE
Done!