Query 036416
Match_columns 256
No_of_seqs 222 out of 1702
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 12:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 6.2E-44 1.3E-48 310.7 18.9 185 68-256 2-213 (339)
2 COG0604 Qor NADPH:quinone redu 100.0 1.4E-40 3E-45 293.9 22.4 187 70-256 1-190 (326)
3 KOG1197 Predicted quinone oxid 100.0 2.9E-38 6.3E-43 260.0 20.1 190 66-256 5-194 (336)
4 COG1062 AdhC Zn-dependent alco 100.0 5.5E-38 1.2E-42 269.1 17.3 185 68-256 1-233 (366)
5 KOG0023 Alcohol dehydrogenase, 100.0 9.2E-38 2E-42 265.1 17.7 191 64-256 4-229 (360)
6 KOG0024 Sorbitol dehydrogenase 100.0 1.3E-37 2.7E-42 264.8 16.8 183 68-256 3-217 (354)
7 KOG0022 Alcohol dehydrogenase, 100.0 3.2E-36 6.8E-41 254.8 17.5 187 67-256 5-240 (375)
8 PLN02740 Alcohol dehydrogenase 100.0 5.3E-35 1.2E-39 264.1 22.2 189 65-256 6-246 (381)
9 cd08281 liver_ADH_like1 Zinc-d 100.0 6.9E-35 1.5E-39 262.4 22.5 185 70-256 1-239 (371)
10 TIGR02818 adh_III_F_hyde S-(hy 100.0 1.1E-34 2.3E-39 260.9 23.2 184 70-256 2-233 (368)
11 cd08301 alcohol_DH_plants Plan 100.0 3.2E-34 7E-39 257.7 23.6 184 69-255 2-234 (369)
12 TIGR02822 adh_fam_2 zinc-bindi 100.0 4.4E-34 9.5E-39 253.3 22.4 182 73-256 2-212 (329)
13 TIGR03451 mycoS_dep_FDH mycoth 100.0 3.1E-34 6.7E-39 256.9 21.6 184 69-256 1-224 (358)
14 cd08300 alcohol_DH_class_III c 100.0 9.9E-34 2.1E-38 254.6 22.7 185 69-256 2-234 (368)
15 PLN02586 probable cinnamyl alc 100.0 9.2E-34 2E-38 254.2 20.8 186 70-256 11-231 (360)
16 cd08239 THR_DH_like L-threonin 100.0 2.9E-33 6.4E-38 248.4 22.0 182 70-256 1-211 (339)
17 cd08277 liver_alcohol_DH_like 100.0 8.1E-33 1.8E-37 248.4 23.6 184 69-256 2-232 (365)
18 PLN02827 Alcohol dehydrogenase 100.0 1.5E-32 3.2E-37 248.0 23.1 183 68-256 11-241 (378)
19 KOG0025 Zn2+-binding dehydroge 100.0 5.8E-33 1.3E-37 232.4 18.2 193 64-256 14-212 (354)
20 PLN02178 cinnamyl-alcohol dehy 100.0 2.3E-32 4.9E-37 246.4 21.9 186 70-256 5-226 (375)
21 cd08291 ETR_like_1 2-enoyl thi 100.0 1.9E-32 4E-37 241.9 20.9 185 70-256 1-191 (324)
22 TIGR02817 adh_fam_1 zinc-bindi 100.0 2.5E-32 5.5E-37 241.6 20.6 186 71-256 1-197 (336)
23 PRK09880 L-idonate 5-dehydroge 100.0 6.4E-32 1.4E-36 240.6 22.2 179 69-256 4-217 (343)
24 TIGR02819 fdhA_non_GSH formald 100.0 8.1E-32 1.7E-36 244.2 21.4 180 70-255 3-232 (393)
25 cd08237 ribitol-5-phosphate_DH 100.0 8.7E-32 1.9E-36 239.7 21.1 178 70-255 3-211 (341)
26 PLN02514 cinnamyl-alcohol dehy 100.0 1.8E-31 3.9E-36 239.1 22.8 185 69-256 9-228 (357)
27 cd08292 ETR_like_2 2-enoyl thi 100.0 1.7E-31 3.7E-36 234.9 21.5 184 70-255 1-186 (324)
28 cd08230 glucose_DH Glucose deh 100.0 1.7E-31 3.6E-36 238.9 20.7 180 70-255 1-221 (355)
29 PRK10754 quinone oxidoreductas 100.0 3.2E-31 6.9E-36 233.9 22.2 187 69-255 1-187 (327)
30 cd08299 alcohol_DH_class_I_II_ 100.0 1E-30 2.2E-35 235.6 22.6 184 69-256 7-238 (373)
31 cd08231 MDR_TM0436_like Hypoth 100.0 2.6E-30 5.6E-35 231.5 23.3 182 71-255 2-224 (361)
32 cd08293 PTGR2 Prostaglandin re 100.0 1.5E-30 3.2E-35 231.4 21.3 174 80-256 19-204 (345)
33 TIGR03201 dearomat_had 6-hydro 100.0 1.2E-30 2.6E-35 233.0 20.6 179 73-256 2-213 (349)
34 cd08296 CAD_like Cinnamyl alco 100.0 2.8E-30 6E-35 229.0 22.7 183 70-256 1-210 (333)
35 cd08295 double_bond_reductase_ 100.0 2.1E-30 4.5E-35 230.3 21.9 182 70-256 8-200 (338)
36 cd08290 ETR 2-enoyl thioester 100.0 1.6E-30 3.6E-35 230.6 20.3 187 70-256 1-198 (341)
37 cd08278 benzyl_alcohol_DH Benz 100.0 4.6E-30 9.9E-35 230.6 22.3 184 68-255 1-233 (365)
38 TIGR01202 bchC 2-desacetyl-2-h 100.0 3.2E-30 6.9E-35 226.6 20.5 176 69-253 1-189 (308)
39 cd08238 sorbose_phosphate_red 100.0 2.9E-30 6.3E-35 235.3 20.9 182 68-252 1-222 (410)
40 cd08233 butanediol_DH_like (2R 100.0 6.9E-30 1.5E-34 227.9 22.1 181 70-256 1-220 (351)
41 cd08246 crotonyl_coA_red croto 100.0 5.9E-30 1.3E-34 231.9 21.9 190 66-255 9-240 (393)
42 PTZ00354 alcohol dehydrogenase 100.0 1.5E-29 3.2E-34 223.1 23.4 186 69-255 1-187 (334)
43 PRK10309 galactitol-1-phosphat 100.0 9.1E-30 2E-34 226.9 22.1 180 70-256 1-208 (347)
44 cd05280 MDR_yhdh_yhfp Yhdh and 100.0 1.7E-29 3.7E-34 222.1 23.1 185 70-256 1-194 (325)
45 cd08294 leukotriene_B4_DH_like 100.0 1.3E-29 2.8E-34 223.5 22.3 178 69-256 2-191 (329)
46 TIGR02825 B4_12hDH leukotriene 100.0 1.4E-29 3E-34 223.7 21.1 171 76-256 11-186 (325)
47 PRK10083 putative oxidoreducta 100.0 2.1E-29 4.6E-34 223.4 22.2 181 70-256 1-209 (339)
48 cd08243 quinone_oxidoreductase 100.0 2.3E-29 4.9E-34 220.3 22.1 184 70-255 1-189 (320)
49 cd08285 NADP_ADH NADP(H)-depen 100.0 3E-29 6.6E-34 223.8 22.5 182 70-256 1-214 (351)
50 cd08274 MDR9 Medium chain dehy 100.0 2.3E-29 5E-34 223.9 21.6 184 70-255 1-223 (350)
51 COG1063 Tdh Threonine dehydrog 100.0 1.5E-29 3.2E-34 226.0 20.2 181 70-255 1-216 (350)
52 cd05284 arabinose_DH_like D-ar 100.0 2.4E-29 5.2E-34 223.1 21.4 184 70-256 1-215 (340)
53 cd08250 Mgc45594_like Mgc45594 100.0 3.5E-29 7.5E-34 220.9 22.2 182 70-255 2-186 (329)
54 cd08270 MDR4 Medium chain dehy 100.0 4.6E-29 1E-33 217.6 22.7 179 70-255 1-179 (305)
55 cd08244 MDR_enoyl_red Possible 100.0 4.8E-29 1E-33 219.1 22.9 185 70-255 1-189 (324)
56 PRK09422 ethanol-active dehydr 100.0 2.9E-29 6.4E-34 222.3 21.7 181 70-255 1-209 (338)
57 PLN03154 putative allyl alcoho 100.0 6.8E-29 1.5E-33 221.8 23.8 184 69-256 8-207 (348)
58 cd05279 Zn_ADH1 Liver alcohol 100.0 4.7E-29 1E-33 224.0 22.5 183 70-256 1-231 (365)
59 cd08259 Zn_ADH5 Alcohol dehydr 100.0 6.7E-29 1.5E-33 218.7 23.0 183 70-255 1-209 (332)
60 cd08288 MDR_yhdh Yhdh putative 100.0 7.2E-29 1.6E-33 218.3 22.9 184 70-255 1-193 (324)
61 cd08252 AL_MDR Arginate lyase 100.0 6.4E-29 1.4E-33 219.7 21.9 186 70-255 1-197 (336)
62 TIGR01751 crot-CoA-red crotony 100.0 6.1E-29 1.3E-33 225.8 22.1 190 66-255 4-236 (398)
63 cd08298 CAD2 Cinnamyl alcohol 100.0 1.3E-28 2.8E-33 217.4 23.2 184 70-255 1-213 (329)
64 cd08289 MDR_yhfp_like Yhfp put 100.0 8.9E-29 1.9E-33 217.9 21.8 184 70-255 1-193 (326)
65 cd08297 CAD3 Cinnamyl alcohol 100.0 1.4E-28 3E-33 218.4 22.9 184 70-255 1-212 (341)
66 PRK13771 putative alcohol dehy 100.0 8.7E-29 1.9E-33 219.0 21.4 180 70-252 1-206 (334)
67 cd08260 Zn_ADH6 Alcohol dehydr 100.0 1.3E-28 2.9E-33 218.9 22.5 182 70-255 1-211 (345)
68 cd08283 FDH_like_1 Glutathione 100.0 1.3E-28 2.8E-33 222.8 22.6 179 70-253 1-229 (386)
69 TIGR02823 oxido_YhdH putative 100.0 1.9E-28 4E-33 215.8 22.6 183 71-255 1-192 (323)
70 cd05278 FDH_like Formaldehyde 100.0 1E-28 2.2E-33 219.5 21.1 181 70-255 1-214 (347)
71 cd08249 enoyl_reductase_like e 100.0 3E-29 6.5E-34 222.9 17.7 183 70-255 1-200 (339)
72 cd08279 Zn_ADH_class_III Class 100.0 1.4E-28 3E-33 220.7 22.0 182 70-255 1-229 (363)
73 cd08273 MDR8 Medium chain dehy 100.0 3.6E-28 7.8E-33 214.3 22.9 183 71-255 2-185 (331)
74 cd08286 FDH_like_ADH2 formalde 100.0 3.5E-28 7.5E-33 216.3 22.7 183 70-256 1-214 (345)
75 cd08263 Zn_ADH10 Alcohol dehyd 100.0 2.9E-28 6.3E-33 218.8 22.4 182 70-255 1-234 (367)
76 cd08240 6_hydroxyhexanoate_dh_ 100.0 1.7E-28 3.7E-33 218.8 20.7 183 70-255 1-222 (350)
77 cd08256 Zn_ADH2 Alcohol dehydr 100.0 4.8E-28 1E-32 216.0 23.0 180 70-255 1-221 (350)
78 cd08264 Zn_ADH_like2 Alcohol d 100.0 3.8E-28 8.2E-33 214.1 22.0 179 70-255 1-205 (325)
79 cd08282 PFDH_like Pseudomonas 100.0 3.4E-28 7.4E-33 219.2 22.1 179 70-254 1-222 (375)
80 cd08248 RTN4I1 Human Reticulon 100.0 2.6E-28 5.5E-33 217.2 20.7 185 70-255 1-208 (350)
81 cd05283 CAD1 Cinnamyl alcohol 100.0 4.5E-28 9.8E-33 215.2 21.9 181 71-255 1-215 (337)
82 cd08261 Zn_ADH7 Alcohol dehydr 100.0 6.5E-28 1.4E-32 213.9 22.9 180 70-256 1-206 (337)
83 cd08262 Zn_ADH8 Alcohol dehydr 100.0 3.6E-28 7.9E-33 215.7 21.2 179 70-255 1-208 (341)
84 cd05282 ETR_like 2-enoyl thioe 100.0 3.6E-28 7.7E-33 213.5 20.9 179 76-255 4-185 (323)
85 cd08253 zeta_crystallin Zeta-c 100.0 8.2E-28 1.8E-32 210.1 22.0 186 70-255 1-191 (325)
86 cd08235 iditol_2_DH_like L-idi 100.0 1.2E-27 2.6E-32 212.4 23.0 180 70-255 1-212 (343)
87 cd05276 p53_inducible_oxidored 100.0 1E-27 2.2E-32 209.1 21.8 185 70-255 1-186 (323)
88 cd08276 MDR7 Medium chain dehy 100.0 1.5E-27 3.2E-32 210.4 22.9 185 70-255 1-206 (336)
89 cd08284 FDH_like_2 Glutathione 100.0 1.2E-27 2.5E-32 212.6 22.2 180 70-255 1-214 (344)
90 cd08258 Zn_ADH4 Alcohol dehydr 100.0 2.2E-27 4.8E-32 208.2 22.8 183 70-255 1-212 (306)
91 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 1.6E-27 3.6E-32 210.6 21.8 184 70-255 1-211 (338)
92 cd08272 MDR6 Medium chain dehy 100.0 2.4E-27 5.2E-32 207.6 22.0 185 70-255 1-190 (326)
93 cd08242 MDR_like Medium chain 100.0 2.8E-27 6.1E-32 208.1 21.8 174 70-255 1-201 (319)
94 cd05286 QOR2 Quinone oxidoredu 100.0 3.8E-27 8.3E-32 205.2 22.4 183 71-255 1-183 (320)
95 cd08236 sugar_DH NAD(P)-depend 100.0 3E-27 6.6E-32 209.9 21.9 179 70-255 1-206 (343)
96 cd08266 Zn_ADH_like1 Alcohol d 100.0 6.2E-27 1.3E-31 206.3 23.0 186 70-255 1-213 (342)
97 cd08234 threonine_DH_like L-th 100.0 4.3E-27 9.3E-32 208.0 22.0 179 70-255 1-206 (334)
98 cd08271 MDR5 Medium chain dehy 100.0 8.3E-27 1.8E-31 204.5 22.8 185 70-255 1-187 (325)
99 cd08245 CAD Cinnamyl alcohol d 100.0 7.5E-27 1.6E-31 206.2 21.7 181 71-255 1-208 (330)
100 cd08247 AST1_like AST1 is a cy 100.0 7E-27 1.5E-31 208.5 21.6 184 71-255 2-199 (352)
101 cd08268 MDR2 Medium chain dehy 100.0 1.4E-26 3E-31 202.8 22.5 186 70-255 1-191 (328)
102 PRK05396 tdh L-threonine 3-deh 100.0 1.1E-26 2.4E-31 206.4 21.5 181 70-256 1-211 (341)
103 cd08287 FDH_like_ADH3 formalde 100.0 1.4E-26 3E-31 205.8 21.8 181 70-256 1-216 (345)
104 cd05289 MDR_like_2 alcohol deh 100.0 1.4E-26 3.1E-31 201.1 20.8 185 70-255 1-190 (309)
105 KOG1198 Zinc-binding oxidoredu 100.0 7.6E-27 1.7E-31 207.1 19.2 186 70-256 5-205 (347)
106 cd08267 MDR1 Medium chain dehy 99.9 2.6E-26 5.6E-31 200.8 20.7 180 75-255 3-189 (319)
107 TIGR02824 quinone_pig3 putativ 99.9 5.1E-26 1.1E-30 198.9 22.4 185 70-255 1-186 (325)
108 PLN02702 L-idonate 5-dehydroge 99.9 3.6E-26 7.9E-31 205.0 21.9 181 70-256 18-229 (364)
109 cd05285 sorbitol_DH Sorbitol d 99.9 3.7E-26 7.9E-31 203.3 21.0 177 73-255 2-209 (343)
110 cd08265 Zn_ADH3 Alcohol dehydr 99.9 6.8E-26 1.5E-30 204.9 22.4 181 70-256 29-251 (384)
111 cd08232 idonate-5-DH L-idonate 99.9 6.5E-26 1.4E-30 201.1 21.4 173 80-255 5-212 (339)
112 cd08269 Zn_ADH9 Alcohol dehydr 99.9 7.7E-26 1.7E-30 197.7 20.6 168 81-255 4-176 (312)
113 cd05288 PGDH Prostaglandin deh 99.9 1.4E-25 3.1E-30 197.7 22.1 179 71-255 3-193 (329)
114 cd05281 TDH Threonine dehydrog 99.9 1.7E-25 3.7E-30 198.9 21.7 181 70-256 1-211 (341)
115 cd08251 polyketide_synthase po 99.9 1.3E-25 2.8E-30 194.7 20.4 164 91-255 2-167 (303)
116 cd08241 QOR1 Quinone oxidoredu 99.9 3.7E-25 8E-30 193.1 22.1 184 70-255 1-186 (323)
117 cd05188 MDR Medium chain reduc 99.9 3E-25 6.6E-30 189.4 19.3 157 98-255 1-180 (271)
118 TIGR00692 tdh L-threonine 3-de 99.9 5.3E-25 1.1E-29 195.6 20.1 174 76-255 5-208 (340)
119 cd08275 MDR3 Medium chain dehy 99.9 2.4E-24 5.1E-29 189.8 22.5 183 71-255 1-185 (337)
120 cd05195 enoyl_red enoyl reduct 99.9 2.5E-24 5.4E-29 184.8 19.0 153 97-253 1-153 (293)
121 COG2130 Putative NADP-dependen 99.9 4.8E-24 1E-28 180.4 16.9 171 81-256 24-199 (340)
122 smart00829 PKS_ER Enoylreducta 99.9 1.6E-23 3.5E-28 179.7 18.6 149 101-254 2-150 (288)
123 TIGR03366 HpnZ_proposed putati 99.9 1.4E-23 3E-28 182.1 16.0 127 128-256 1-168 (280)
124 cd08255 2-desacetyl-2-hydroxye 99.8 6.9E-20 1.5E-24 157.9 15.9 128 118-253 14-142 (277)
125 KOG1196 Predicted NAD-dependen 99.8 6.3E-18 1.4E-22 143.0 18.2 163 88-256 28-202 (343)
126 PF08240 ADH_N: Alcohol dehydr 99.8 8.3E-19 1.8E-23 131.1 9.3 82 96-177 1-109 (109)
127 KOG1202 Animal-type fatty acid 99.8 6.5E-19 1.4E-23 169.0 9.5 162 79-251 1424-1595(2376)
128 PRK09424 pntA NAD(P) transhydr 98.4 3.5E-06 7.6E-11 78.6 11.2 49 206-255 162-210 (509)
129 cd00401 AdoHcyase S-adenosyl-L 97.8 0.0001 2.2E-09 67.2 8.1 58 197-255 189-247 (413)
130 TIGR00561 pntA NAD(P) transhyd 97.5 0.00048 1E-08 64.4 8.3 48 207-255 162-209 (511)
131 PRK00517 prmA ribosomal protei 97.2 0.0017 3.7E-08 55.4 8.0 93 146-251 66-160 (250)
132 PRK05476 S-adenosyl-L-homocyst 97.1 0.0019 4E-08 59.3 8.3 60 194-254 196-256 (425)
133 PRK08306 dipicolinate synthase 97.1 0.0046 1E-07 54.2 9.6 47 208-255 151-197 (296)
134 TIGR00936 ahcY adenosylhomocys 97.0 0.0033 7.2E-08 57.3 8.2 58 196-254 181-239 (406)
135 PRK12771 putative glutamate sy 96.7 0.0038 8.2E-08 59.6 6.7 50 205-255 133-203 (564)
136 PLN02494 adenosylhomocysteinas 96.6 0.0085 1.8E-07 55.4 7.8 57 197-254 241-298 (477)
137 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.0036 7.7E-08 55.3 4.3 80 173-254 140-224 (311)
138 PRK08324 short chain dehydroge 96.4 0.0071 1.5E-07 59.1 6.4 78 161-249 385-462 (681)
139 PTZ00075 Adenosylhomocysteinas 96.3 0.044 9.5E-07 50.9 10.4 48 206-254 251-298 (476)
140 PF01488 Shikimate_DH: Shikima 96.2 0.02 4.4E-07 44.1 6.6 44 208-252 11-56 (135)
141 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.035 7.7E-07 45.3 8.4 42 208-249 27-68 (194)
142 PLN02780 ketoreductase/ oxidor 96.0 0.017 3.7E-07 51.1 6.5 43 207-249 51-93 (320)
143 PRK05866 short chain dehydroge 96.0 0.021 4.6E-07 49.7 6.8 42 208-249 39-80 (293)
144 TIGR02853 spore_dpaA dipicolin 96.0 0.048 1E-06 47.6 8.8 46 208-254 150-195 (287)
145 PF01262 AlaDh_PNT_C: Alanine 95.9 0.031 6.8E-07 44.6 6.9 45 209-254 20-64 (168)
146 PRK05854 short chain dehydroge 95.9 0.024 5.2E-07 49.9 6.8 40 208-247 13-52 (313)
147 PRK00045 hemA glutamyl-tRNA re 95.9 0.026 5.7E-07 51.9 7.3 116 128-254 91-228 (423)
148 PLN03209 translocon at the inn 95.9 0.024 5.2E-07 53.8 7.0 46 203-248 74-119 (576)
149 PRK07831 short chain dehydroge 95.9 0.026 5.7E-07 47.9 6.8 43 206-248 14-57 (262)
150 cd01075 NAD_bind_Leu_Phe_Val_D 95.8 0.05 1.1E-06 44.9 7.9 46 208-254 27-73 (200)
151 PF02826 2-Hacid_dh_C: D-isome 95.8 0.031 6.7E-07 45.1 6.5 46 207-253 34-79 (178)
152 PRK04148 hypothetical protein; 95.8 0.038 8.3E-07 42.5 6.4 48 205-254 13-60 (134)
153 PRK11873 arsM arsenite S-adeno 95.7 0.027 5.9E-07 48.4 6.3 46 204-251 73-120 (272)
154 PRK06196 oxidoreductase; Provi 95.7 0.034 7.3E-07 48.9 6.8 41 208-248 25-65 (315)
155 PRK06841 short chain dehydroge 95.7 0.035 7.6E-07 46.8 6.6 43 208-250 14-56 (255)
156 PRK06197 short chain dehydroge 95.5 0.039 8.4E-07 48.2 6.6 40 208-247 15-54 (306)
157 TIGR00518 alaDH alanine dehydr 95.5 0.036 7.9E-07 50.1 6.4 45 209-254 167-212 (370)
158 PF11017 DUF2855: Protein of u 95.2 0.48 1E-05 41.8 12.1 114 134-254 38-182 (314)
159 PRK11705 cyclopropane fatty ac 95.2 0.07 1.5E-06 48.5 7.3 58 193-252 152-209 (383)
160 PF02353 CMAS: Mycolic acid cy 95.2 0.06 1.3E-06 46.6 6.5 50 199-250 53-102 (273)
161 PRK06935 2-deoxy-D-gluconate 3 95.1 0.061 1.3E-06 45.6 6.4 35 208-242 14-48 (258)
162 PLN02253 xanthoxin dehydrogena 95.1 0.067 1.5E-06 45.9 6.7 40 208-247 17-56 (280)
163 TIGR01035 hemA glutamyl-tRNA r 95.1 0.13 2.7E-06 47.4 8.8 116 128-254 89-226 (417)
164 KOG1208 Dehydrogenases with di 95.0 0.069 1.5E-06 47.2 6.5 43 207-249 33-75 (314)
165 KOG1252 Cystathionine beta-syn 94.9 0.14 3E-06 45.2 7.8 53 203-255 97-152 (362)
166 COG2230 Cfa Cyclopropane fatty 94.6 0.23 5E-06 43.1 8.5 65 179-251 49-113 (283)
167 PRK12549 shikimate 5-dehydroge 94.6 0.21 4.5E-06 43.5 8.5 41 208-249 126-167 (284)
168 TIGR00406 prmA ribosomal prote 94.6 0.23 5.1E-06 43.2 8.7 92 147-251 106-200 (288)
169 KOG1210 Predicted 3-ketosphing 94.5 0.21 4.6E-06 43.7 8.0 46 205-250 29-74 (331)
170 PRK07424 bifunctional sterol d 94.4 0.11 2.4E-06 47.6 6.4 40 208-247 177-216 (406)
171 PF00670 AdoHcyase_NAD: S-aden 94.4 0.15 3.3E-06 40.5 6.4 47 206-253 20-66 (162)
172 PRK06720 hypothetical protein; 94.4 0.16 3.6E-06 40.6 6.7 39 208-246 15-53 (169)
173 PRK08261 fabG 3-ketoacyl-(acyl 94.4 0.024 5.3E-07 52.4 2.2 43 203-245 28-74 (450)
174 COG0031 CysK Cysteine synthase 94.4 0.21 4.5E-06 43.7 7.8 53 202-255 55-110 (300)
175 PRK00258 aroE shikimate 5-dehy 94.3 0.26 5.7E-06 42.7 8.4 42 207-249 121-163 (278)
176 PRK12367 short chain dehydroge 94.3 0.1 2.2E-06 44.2 5.8 36 208-243 13-48 (245)
177 PRK06484 short chain dehydroge 94.3 0.12 2.7E-06 48.5 6.7 44 207-250 267-310 (520)
178 COG0169 AroE Shikimate 5-dehyd 94.2 0.27 5.9E-06 42.7 8.2 43 207-250 124-167 (283)
179 PRK12550 shikimate 5-dehydroge 94.0 0.35 7.6E-06 41.8 8.5 44 205-249 118-162 (272)
180 PLN00141 Tic62-NAD(P)-related 94.0 0.15 3.2E-06 43.2 6.1 40 208-247 16-55 (251)
181 PLN02686 cinnamoyl-CoA reducta 93.9 0.17 3.6E-06 45.7 6.5 44 206-249 50-93 (367)
182 TIGR00507 aroE shikimate 5-deh 93.9 0.37 8E-06 41.5 8.4 43 206-249 114-156 (270)
183 PRK14027 quinate/shikimate deh 93.8 0.29 6.3E-06 42.6 7.7 42 207-249 125-167 (283)
184 TIGR01318 gltD_gamma_fam gluta 93.8 0.17 3.7E-06 47.2 6.5 47 208-255 140-207 (467)
185 TIGR01809 Shik-DH-AROM shikima 93.5 0.22 4.8E-06 43.3 6.5 41 208-249 124-165 (282)
186 PF12847 Methyltransf_18: Meth 93.5 0.24 5.2E-06 36.0 5.8 42 208-251 1-43 (112)
187 TIGR02632 RhaD_aldol-ADH rhamn 93.4 0.21 4.6E-06 48.8 6.7 41 208-248 413-453 (676)
188 PF06325 PrmA: Ribosomal prote 93.3 0.2 4.4E-06 43.9 5.8 91 147-250 108-201 (295)
189 PRK12769 putative oxidoreducta 93.3 0.19 4.1E-06 49.0 6.2 36 207-243 325-360 (654)
190 PRK00377 cbiT cobalt-precorrin 93.3 0.49 1.1E-05 38.7 7.8 46 203-250 35-82 (198)
191 PLN03013 cysteine synthase 93.3 0.44 9.6E-06 43.9 8.1 54 202-255 167-223 (429)
192 PLN02565 cysteine synthase 93.2 0.55 1.2E-05 41.7 8.4 53 203-255 60-115 (322)
193 PRK06128 oxidoreductase; Provi 93.1 0.26 5.6E-06 42.9 6.2 35 208-242 54-88 (300)
194 PRK07201 short chain dehydroge 93.1 0.25 5.5E-06 47.8 6.8 40 209-248 371-410 (657)
195 PRK07985 oxidoreductase; Provi 93.0 0.25 5.4E-06 43.0 6.0 35 208-242 48-82 (294)
196 KOG1014 17 beta-hydroxysteroid 93.0 0.3 6.5E-06 42.7 6.2 43 207-250 47-90 (312)
197 PRK05855 short chain dehydroge 92.9 0.28 6.1E-06 46.4 6.7 41 208-248 314-354 (582)
198 PRK12548 shikimate 5-dehydroge 92.9 0.58 1.3E-05 40.8 8.2 35 208-243 125-160 (289)
199 PRK08261 fabG 3-ketoacyl-(acyl 92.6 0.29 6.3E-06 45.2 6.2 35 208-242 209-243 (450)
200 PRK12809 putative oxidoreducta 92.6 0.25 5.4E-06 48.0 6.0 35 208-243 309-343 (639)
201 PRK01438 murD UDP-N-acetylmura 92.5 0.36 7.8E-06 45.1 6.7 46 208-254 15-65 (480)
202 PRK06701 short chain dehydroge 92.4 0.38 8.3E-06 41.7 6.3 36 208-243 45-80 (290)
203 PF13823 ADH_N_assoc: Alcohol 92.3 0.17 3.6E-06 26.4 2.4 22 70-94 1-22 (23)
204 PLN02556 cysteine synthase/L-3 92.1 0.83 1.8E-05 41.3 8.2 54 202-255 103-159 (368)
205 PF02254 TrkA_N: TrkA-N domain 92.1 0.68 1.5E-05 34.0 6.5 42 212-254 1-42 (116)
206 PRK15181 Vi polysaccharide bio 92.1 0.26 5.7E-06 43.9 5.0 47 195-242 2-48 (348)
207 KOG1201 Hydroxysteroid 17-beta 92.0 0.41 8.8E-06 41.7 5.9 38 207-244 36-73 (300)
208 PTZ00079 NADP-specific glutama 91.9 0.89 1.9E-05 42.1 8.2 36 207-243 235-270 (454)
209 PRK12749 quinate/shikimate deh 91.9 0.87 1.9E-05 39.8 7.9 35 208-243 123-158 (288)
210 cd01080 NAD_bind_m-THF_DH_Cycl 91.8 1.1 2.5E-05 35.8 7.9 57 189-246 24-81 (168)
211 cd05311 NAD_bind_2_malic_enz N 91.8 0.97 2.1E-05 38.0 7.8 44 198-242 14-60 (226)
212 PLN02657 3,8-divinyl protochlo 91.6 0.39 8.4E-06 43.7 5.6 41 205-245 56-96 (390)
213 TIGR01138 cysM cysteine syntha 91.5 1.3 2.9E-05 38.5 8.7 51 204-255 54-107 (290)
214 PRK11761 cysM cysteine synthas 91.4 1.3 2.9E-05 38.7 8.6 51 204-255 58-111 (296)
215 cd01065 NAD_bind_Shikimate_DH 91.3 1.8 3.8E-05 33.5 8.5 46 207-253 17-64 (155)
216 COG0334 GdhA Glutamate dehydro 91.2 0.79 1.7E-05 41.7 7.1 37 207-244 205-241 (411)
217 PF01135 PCMT: Protein-L-isoas 91.2 0.75 1.6E-05 38.2 6.5 47 202-250 66-114 (209)
218 COG2518 Pcm Protein-L-isoaspar 91.2 0.78 1.7E-05 38.0 6.5 50 202-254 66-119 (209)
219 PRK07574 formate dehydrogenase 91.1 0.5 1.1E-05 43.0 5.7 46 208-254 191-236 (385)
220 PLN02520 bifunctional 3-dehydr 91.0 0.6 1.3E-05 44.4 6.5 41 208-249 378-418 (529)
221 PLN02427 UDP-apiose/xylose syn 91.0 0.58 1.3E-05 42.3 6.2 43 207-249 12-55 (386)
222 PRK13403 ketol-acid reductoiso 90.8 0.7 1.5E-05 41.0 6.2 47 207-254 14-60 (335)
223 TIGR02469 CbiT precorrin-6Y C5 90.7 1.2 2.6E-05 32.7 6.7 47 202-250 13-60 (124)
224 PRK00141 murD UDP-N-acetylmura 90.6 0.72 1.6E-05 43.1 6.5 47 207-254 13-60 (473)
225 PRK10669 putative cation:proto 90.5 0.62 1.4E-05 44.5 6.1 44 210-254 418-461 (558)
226 PLN03139 formate dehydrogenase 90.2 0.63 1.4E-05 42.4 5.6 46 208-254 198-243 (386)
227 PRK10717 cysteine synthase A; 90.2 1.9 4.1E-05 38.2 8.6 51 204-255 59-112 (330)
228 KOG1200 Mitochondrial/plastidi 90.2 1 2.2E-05 37.0 6.1 45 210-254 15-60 (256)
229 cd05211 NAD_bind_Glu_Leu_Phe_V 90.1 2.2 4.9E-05 35.6 8.5 34 208-242 22-55 (217)
230 PRK13942 protein-L-isoaspartat 90.1 1.5 3.2E-05 36.4 7.3 48 202-251 70-119 (212)
231 COG2264 PrmA Ribosomal protein 90.1 2.1 4.5E-05 37.5 8.4 92 146-250 108-202 (300)
232 PRK03562 glutathione-regulated 89.9 0.71 1.5E-05 44.8 6.0 45 209-254 400-444 (621)
233 PRK06719 precorrin-2 dehydroge 89.9 0.78 1.7E-05 36.3 5.3 32 208-240 12-43 (157)
234 PRK13656 trans-2-enoyl-CoA red 89.9 0.96 2.1E-05 41.1 6.4 34 207-241 39-74 (398)
235 PRK09310 aroDE bifunctional 3- 89.9 1.8 3.9E-05 40.6 8.5 41 208-249 331-371 (477)
236 PF00070 Pyr_redox: Pyridine n 89.8 0.86 1.9E-05 31.3 4.9 33 211-244 1-33 (80)
237 TIGR01139 cysK cysteine syntha 89.8 2.3 5.1E-05 37.1 8.7 51 204-255 52-105 (298)
238 TIGR02964 xanthine_xdhC xanthi 89.7 0.74 1.6E-05 39.2 5.3 39 205-244 96-134 (246)
239 PLN00011 cysteine synthase 89.6 2.1 4.6E-05 37.9 8.4 53 202-255 61-117 (323)
240 PLN02572 UDP-sulfoquinovose sy 89.6 0.61 1.3E-05 43.2 5.1 35 207-241 45-79 (442)
241 TIGR01136 cysKM cysteine synth 89.6 2.4 5.1E-05 37.1 8.6 51 204-255 53-106 (299)
242 cd05313 NAD_bind_2_Glu_DH NAD( 89.6 1.6 3.5E-05 37.3 7.3 34 207-241 36-69 (254)
243 PRK13940 glutamyl-tRNA reducta 89.6 2 4.4E-05 39.5 8.4 46 207-253 179-226 (414)
244 TIGR01137 cysta_beta cystathio 89.4 2.2 4.8E-05 39.5 8.7 51 204-255 57-110 (454)
245 PRK13943 protein-L-isoaspartat 89.3 1.6 3.5E-05 38.7 7.4 47 202-250 74-122 (322)
246 PRK13243 glyoxylate reductase; 89.2 0.97 2.1E-05 40.3 6.0 36 208-244 149-184 (333)
247 PRK14982 acyl-ACP reductase; P 89.1 2.4 5.1E-05 38.0 8.3 47 207-253 153-202 (340)
248 PRK08317 hypothetical protein; 89.1 1.5 3.2E-05 36.2 6.8 49 202-252 13-63 (241)
249 PRK14175 bifunctional 5,10-met 89.0 2.4 5.2E-05 37.0 8.0 57 189-245 138-194 (286)
250 PF12242 Eno-Rase_NADH_b: NAD( 88.9 1.5 3.2E-05 30.2 5.2 37 205-241 35-72 (78)
251 PRK14030 glutamate dehydrogena 88.9 2.3 4.9E-05 39.4 8.2 32 207-239 226-257 (445)
252 PRK14967 putative methyltransf 88.8 2.1 4.5E-05 35.6 7.4 45 204-251 32-77 (223)
253 cd01562 Thr-dehyd Threonine de 88.8 1.4 3.1E-05 38.3 6.7 46 209-255 65-113 (304)
254 PLN02206 UDP-glucuronate decar 88.6 0.86 1.9E-05 42.3 5.3 35 207-241 117-151 (442)
255 COG1052 LdhA Lactate dehydroge 88.5 0.96 2.1E-05 40.2 5.4 36 208-244 145-180 (324)
256 PLN02695 GDP-D-mannose-3',5'-e 88.4 0.92 2E-05 40.9 5.3 36 207-242 19-54 (370)
257 PLN02928 oxidoreductase family 88.4 0.89 1.9E-05 40.8 5.1 34 208-242 158-191 (347)
258 PRK03659 glutathione-regulated 88.1 1.2 2.6E-05 43.0 6.2 44 210-254 401-444 (601)
259 PF13241 NAD_binding_7: Putati 88.0 0.65 1.4E-05 33.8 3.4 35 208-243 6-40 (103)
260 KOG1610 Corticosteroid 11-beta 88.0 2.7 5.9E-05 36.9 7.7 44 207-250 27-70 (322)
261 cd06447 D-Ser-dehyd D-Serine d 87.9 3.5 7.6E-05 37.8 8.8 44 212-255 136-182 (404)
262 PRK08410 2-hydroxyacid dehydro 87.8 1 2.2E-05 39.8 5.1 34 208-242 144-177 (311)
263 PRK01710 murD UDP-N-acetylmura 87.7 1.5 3.2E-05 40.8 6.3 35 208-243 13-47 (458)
264 PLN02166 dTDP-glucose 4,6-dehy 87.6 1.1 2.4E-05 41.5 5.4 36 207-242 118-153 (436)
265 PLN02970 serine racemase 87.4 2.4 5.2E-05 37.7 7.3 45 210-255 76-123 (328)
266 PRK14031 glutamate dehydrogena 87.4 2.4 5.1E-05 39.4 7.3 34 207-241 226-259 (444)
267 PRK06110 hypothetical protein; 87.3 2.6 5.6E-05 37.3 7.4 45 211-255 71-118 (322)
268 cd05212 NAD_bind_m-THF_DH_Cycl 87.3 3.9 8.5E-05 31.7 7.5 54 189-242 8-61 (140)
269 PLN02477 glutamate dehydrogena 87.2 2.4 5.2E-05 38.9 7.3 34 208-242 205-238 (410)
270 PLN02356 phosphateglycerate ki 87.2 3.3 7.1E-05 38.2 8.1 50 205-255 100-152 (423)
271 PF03807 F420_oxidored: NADP o 87.1 2.8 6E-05 29.6 6.3 43 211-254 1-48 (96)
272 COG0686 Ald Alanine dehydrogen 87.1 2.6 5.7E-05 37.1 7.0 148 96-251 30-209 (371)
273 TIGR00080 pimt protein-L-isoas 87.1 2.8 6.1E-05 34.6 7.1 47 202-250 71-119 (215)
274 PF02882 THF_DHG_CYH_C: Tetrah 86.9 3.7 7.9E-05 32.6 7.2 57 188-244 15-71 (160)
275 PRK08198 threonine dehydratase 86.9 2.5 5.4E-05 38.6 7.3 47 208-255 69-118 (404)
276 PRK12810 gltD glutamate syntha 86.8 1.9 4.1E-05 40.3 6.5 35 207-242 141-175 (471)
277 PRK12814 putative NADPH-depend 86.8 1.4 3.1E-05 42.9 5.9 36 207-243 191-226 (652)
278 cd01076 NAD_bind_1_Glu_DH NAD( 86.8 4.9 0.00011 33.8 8.4 34 208-242 30-63 (227)
279 COG0111 SerA Phosphoglycerate 86.8 1.1 2.4E-05 39.8 4.7 32 209-241 142-173 (324)
280 PRK13984 putative oxidoreducta 86.8 1.9 4.2E-05 41.5 6.8 36 206-242 280-315 (604)
281 PRK07402 precorrin-6B methylas 86.8 2.7 5.8E-05 34.1 6.8 49 200-250 32-81 (196)
282 TIGR01317 GOGAT_sm_gam glutama 86.8 1.8 3.9E-05 40.6 6.4 35 207-242 141-175 (485)
283 PRK06932 glycerate dehydrogena 86.7 1.2 2.6E-05 39.4 4.9 34 208-242 146-179 (314)
284 cd01561 CBS_like CBS_like: Thi 86.6 5 0.00011 34.8 8.7 49 206-255 50-101 (291)
285 PRK06487 glycerate dehydrogena 86.6 1.3 2.8E-05 39.2 5.0 34 208-242 147-180 (317)
286 KOG1203 Predicted dehydrogenas 86.5 1.5 3.3E-05 40.1 5.5 42 205-246 75-116 (411)
287 PRK13944 protein-L-isoaspartat 86.5 3.5 7.5E-05 33.9 7.3 47 202-250 66-114 (205)
288 PRK07048 serine/threonine dehy 86.3 2.9 6.3E-05 36.9 7.2 45 210-255 73-120 (321)
289 PRK14192 bifunctional 5,10-met 86.2 4.1 8.9E-05 35.5 7.9 37 206-243 156-193 (283)
290 PF00056 Ldh_1_N: lactate/mala 86.2 2.6 5.7E-05 32.5 6.1 36 211-246 2-39 (141)
291 cd00640 Trp-synth-beta_II Tryp 86.0 4.2 9.2E-05 34.2 7.8 47 208-255 49-98 (244)
292 PRK06436 glycerate dehydrogena 85.9 1.6 3.5E-05 38.4 5.2 34 208-242 121-154 (303)
293 PRK06381 threonine synthase; V 85.9 2.8 6.1E-05 36.9 6.9 47 209-255 62-111 (319)
294 PLN00203 glutamyl-tRNA reducta 85.9 2.7 5.9E-05 39.9 7.0 44 208-252 265-310 (519)
295 PRK12480 D-lactate dehydrogena 85.7 2 4.3E-05 38.3 5.8 37 208-245 145-181 (330)
296 cd06448 L-Ser-dehyd Serine deh 85.7 3.3 7.1E-05 36.6 7.2 48 207-255 49-99 (316)
297 PRK05579 bifunctional phosphop 85.5 1.6 3.4E-05 40.0 5.2 35 208-242 187-237 (399)
298 TIGR02035 D_Ser_am_lyase D-ser 85.5 4.8 0.0001 37.3 8.3 45 211-255 153-200 (431)
299 PRK11207 tellurite resistance 85.5 2.4 5.2E-05 34.6 5.8 44 204-250 26-69 (197)
300 PLN02256 arogenate dehydrogena 85.3 3.7 7.9E-05 36.2 7.2 51 202-254 29-79 (304)
301 PF02670 DXP_reductoisom: 1-de 85.1 2.5 5.4E-05 32.3 5.3 31 212-242 1-33 (129)
302 PRK15469 ghrA bifunctional gly 85.1 1.7 3.7E-05 38.4 5.0 36 208-244 135-170 (312)
303 PRK08125 bifunctional UDP-gluc 84.8 1.8 3.8E-05 42.3 5.5 39 206-244 312-351 (660)
304 PRK06608 threonine dehydratase 84.7 4 8.6E-05 36.5 7.3 44 212-255 74-120 (338)
305 cd05191 NAD_bind_amino_acid_DH 84.6 4.9 0.00011 28.0 6.3 34 207-241 21-55 (86)
306 PF10686 DUF2493: Protein of u 84.4 4.4 9.4E-05 27.5 5.7 34 208-241 31-65 (71)
307 PTZ00414 10 kDa heat shock pro 84.2 2.8 6.1E-05 30.5 5.0 41 134-175 46-95 (100)
308 PRK08246 threonine dehydratase 84.2 5.1 0.00011 35.3 7.6 47 208-255 67-116 (310)
309 PRK08638 threonine dehydratase 84.1 4 8.7E-05 36.4 7.0 45 210-255 76-123 (333)
310 PRK14191 bifunctional 5,10-met 84.1 7.2 0.00016 34.0 8.3 55 189-244 137-192 (285)
311 PRK14968 putative methyltransf 84.1 3.1 6.7E-05 33.1 5.8 42 206-250 21-62 (188)
312 cd01563 Thr-synth_1 Threonine 84.0 5 0.00011 35.4 7.6 46 209-255 70-118 (324)
313 PRK11790 D-3-phosphoglycerate 83.7 2.1 4.5E-05 39.3 5.2 34 208-242 150-183 (409)
314 COG0373 HemA Glutamyl-tRNA red 83.6 7.1 0.00015 35.9 8.4 47 207-254 176-224 (414)
315 PRK09414 glutamate dehydrogena 83.6 4.7 0.0001 37.5 7.4 34 207-241 230-263 (445)
316 PF13580 SIS_2: SIS domain; PD 83.2 3.2 6.9E-05 31.8 5.3 38 203-240 98-137 (138)
317 PRK12831 putative oxidoreducta 83.1 3.5 7.6E-05 38.5 6.5 36 206-242 278-313 (464)
318 PF00899 ThiF: ThiF family; I 83.0 2.3 5.1E-05 32.3 4.5 33 209-242 2-35 (135)
319 COG2242 CobL Precorrin-6B meth 82.9 4.8 0.0001 32.7 6.3 50 204-255 30-84 (187)
320 PRK08328 hypothetical protein; 82.9 2.3 5E-05 35.8 4.8 34 208-242 26-60 (231)
321 COG2226 UbiE Methylase involve 82.9 5.9 0.00013 33.6 7.2 50 200-251 43-93 (238)
322 PRK00364 groES co-chaperonin G 82.8 2.6 5.6E-05 30.4 4.3 24 133-156 36-68 (95)
323 PTZ00098 phosphoethanolamine N 82.7 5.2 0.00011 34.3 7.0 48 202-251 46-93 (263)
324 COG1086 Predicted nucleoside-d 82.7 3.7 8E-05 39.0 6.3 41 207-248 248-290 (588)
325 PRK09496 trkA potassium transp 82.5 3.9 8.5E-05 37.7 6.6 44 208-252 230-273 (453)
326 PRK15438 erythronate-4-phospha 82.5 2.6 5.7E-05 38.3 5.2 35 207-242 114-148 (378)
327 PF13450 NAD_binding_8: NAD(P) 82.4 2.7 5.9E-05 28.0 4.1 29 214-243 1-29 (68)
328 TIGR02356 adenyl_thiF thiazole 82.4 2.6 5.6E-05 34.7 4.8 34 208-242 20-54 (202)
329 PRK05479 ketol-acid reductoiso 82.4 4 8.7E-05 36.4 6.2 46 208-254 16-62 (330)
330 PRK14188 bifunctional 5,10-met 82.2 7.6 0.00016 34.1 7.8 55 189-243 138-193 (296)
331 PF00208 ELFV_dehydrog: Glutam 82.2 3.5 7.6E-05 35.1 5.6 32 207-239 30-61 (244)
332 PRK14189 bifunctional 5,10-met 82.1 6.2 0.00013 34.4 7.1 54 189-243 138-192 (285)
333 TIGR01316 gltA glutamate synth 82.0 4.4 9.5E-05 37.6 6.7 36 206-242 269-304 (449)
334 TIGR02355 moeB molybdopterin s 81.9 2.8 6E-05 35.5 4.9 33 209-242 24-57 (240)
335 TIGR01127 ilvA_1Cterm threonin 81.4 6.4 0.00014 35.6 7.4 43 213-255 51-96 (380)
336 PF08704 GCD14: tRNA methyltra 81.2 5.6 0.00012 33.9 6.5 47 202-250 34-82 (247)
337 PRK00257 erythronate-4-phospha 81.1 5 0.00011 36.5 6.5 35 207-242 114-148 (381)
338 PRK15409 bifunctional glyoxyla 81.0 3.7 8.1E-05 36.4 5.6 34 208-242 144-178 (323)
339 PRK06721 threonine synthase; R 80.8 6 0.00013 35.5 6.9 47 209-255 74-124 (352)
340 PRK12831 putative oxidoreducta 80.7 3.1 6.8E-05 38.8 5.2 36 206-242 137-172 (464)
341 PRK02991 D-serine dehydratase; 80.7 12 0.00026 34.8 8.9 44 212-255 159-205 (441)
342 PRK00107 gidB 16S rRNA methylt 80.6 6.5 0.00014 31.9 6.5 44 205-250 42-86 (187)
343 TIGR00477 tehB tellurite resis 80.5 4.8 0.0001 32.8 5.7 45 203-250 25-69 (195)
344 TIGR02991 ectoine_eutB ectoine 80.2 7.4 0.00016 34.4 7.2 43 213-255 70-115 (317)
345 PRK08132 FAD-dependent oxidore 80.1 3.9 8.4E-05 38.9 5.8 33 210-243 24-56 (547)
346 TIGR01327 PGDH D-3-phosphoglyc 80.1 4.4 9.5E-05 38.5 6.0 34 208-242 137-170 (525)
347 PRK14194 bifunctional 5,10-met 80.0 9.6 0.00021 33.5 7.7 56 189-244 139-194 (301)
348 PRK07476 eutB threonine dehydr 79.8 7.3 0.00016 34.4 7.1 43 213-255 70-115 (322)
349 PRK14533 groES co-chaperonin G 79.8 4.9 0.00011 28.7 4.8 42 133-175 36-86 (91)
350 PLN02306 hydroxypyruvate reduc 79.6 3.3 7.2E-05 37.7 4.9 35 208-243 164-199 (386)
351 PRK08813 threonine dehydratase 79.5 9.7 0.00021 34.2 7.7 43 213-255 84-129 (349)
352 PRK07334 threonine dehydratase 79.3 6.5 0.00014 36.0 6.8 44 211-255 73-119 (403)
353 TIGR01042 V-ATPase_V1_A V-type 79.3 5.5 0.00012 38.1 6.3 52 190-242 207-260 (591)
354 PRK13581 D-3-phosphoglycerate 79.3 4.8 0.0001 38.3 6.0 34 208-242 139-172 (526)
355 PRK08639 threonine dehydratase 79.2 7.2 0.00016 35.9 7.0 45 210-255 74-121 (420)
356 PF10294 Methyltransf_16: Puta 79.0 6.7 0.00014 31.3 6.0 60 188-250 20-85 (173)
357 PRK06153 hypothetical protein; 79.0 3 6.5E-05 37.9 4.3 34 208-242 175-209 (393)
358 PRK08287 cobalt-precorrin-6Y C 78.7 12 0.00027 29.9 7.6 47 202-250 25-72 (187)
359 PRK00811 spermidine synthase; 78.7 4.5 9.8E-05 35.1 5.3 43 207-251 75-118 (283)
360 PRK07409 threonine synthase; V 78.7 7.9 0.00017 34.7 7.0 45 211-255 79-127 (353)
361 PRK15116 sulfur acceptor prote 78.5 4.1 9E-05 35.2 4.9 34 208-242 29-63 (268)
362 PLN02244 tocopherol O-methyltr 78.3 6.9 0.00015 34.9 6.4 43 207-251 117-159 (340)
363 PLN00016 RNA-binding protein; 78.1 3 6.5E-05 37.6 4.2 38 208-245 51-92 (378)
364 PRK00216 ubiE ubiquinone/menaq 78.1 8.5 0.00018 31.7 6.7 46 204-251 47-94 (239)
365 PRK14190 bifunctional 5,10-met 78.0 13 0.00027 32.5 7.7 55 189-244 138-193 (284)
366 PRK06815 hypothetical protein; 78.0 9.4 0.0002 33.7 7.2 43 213-255 71-116 (317)
367 PRK07364 2-octaprenyl-6-methox 77.9 3.2 7E-05 37.6 4.3 33 210-243 19-51 (415)
368 PRK08762 molybdopterin biosynt 77.9 5.2 0.00011 36.3 5.6 34 208-242 134-168 (376)
369 PRK10792 bifunctional 5,10-met 77.8 11 0.00024 32.9 7.3 55 189-244 139-194 (285)
370 PRK05690 molybdopterin biosynt 77.8 4.9 0.00011 34.1 5.1 34 208-242 31-65 (245)
371 cd00757 ThiF_MoeB_HesA_family 77.7 4.6 0.0001 33.8 4.9 33 209-242 21-54 (228)
372 PRK14103 trans-aconitate 2-met 77.6 11 0.00024 31.9 7.3 51 202-254 23-74 (255)
373 PRK08223 hypothetical protein; 77.5 4.3 9.2E-05 35.4 4.7 34 208-242 26-60 (287)
374 PRK09754 phenylpropionate diox 77.4 9 0.00019 34.7 7.1 36 206-242 141-176 (396)
375 PRK06141 ornithine cyclodeamin 77.3 16 0.00034 32.2 8.4 42 207-249 123-166 (314)
376 PRK12770 putative glutamate sy 77.3 4.5 9.8E-05 36.1 5.0 36 206-242 15-50 (352)
377 PRK06352 threonine synthase; V 77.3 10 0.00022 34.0 7.3 44 212-255 77-124 (351)
378 PLN03075 nicotianamine synthas 77.1 11 0.00024 33.0 7.2 43 208-251 123-167 (296)
379 PRK12779 putative bifunctional 77.0 3.6 7.9E-05 41.9 4.8 35 207-242 304-338 (944)
380 PRK00312 pcm protein-L-isoaspa 77.0 11 0.00025 30.8 7.1 46 202-250 72-117 (212)
381 PF01118 Semialdhyde_dh: Semia 76.9 5.2 0.00011 29.8 4.5 34 211-244 1-35 (121)
382 PRK13255 thiopurine S-methyltr 76.6 7.4 0.00016 32.4 5.8 42 205-249 34-75 (218)
383 TIGR02354 thiF_fam2 thiamine b 76.6 5.3 0.00011 32.8 4.8 33 209-242 21-54 (200)
384 PRK04176 ribulose-1,5-biphosph 76.5 4.3 9.2E-05 34.7 4.4 31 211-242 27-57 (257)
385 PTZ00188 adrenodoxin reductase 76.4 5.2 0.00011 37.7 5.2 36 207-243 37-73 (506)
386 PRK11036 putative S-adenosyl-L 76.4 7.3 0.00016 33.0 5.9 42 207-251 43-84 (255)
387 PRK14172 bifunctional 5,10-met 76.4 14 0.0003 32.2 7.5 57 189-246 138-195 (278)
388 PRK08644 thiamine biosynthesis 76.0 5.5 0.00012 33.1 4.8 34 208-242 27-61 (212)
389 PF01596 Methyltransf_3: O-met 75.9 3.7 8E-05 34.0 3.7 45 205-251 42-88 (205)
390 COG3288 PntA NAD/NADP transhyd 75.9 5.5 0.00012 35.1 4.8 50 205-255 160-209 (356)
391 PRK05638 threonine synthase; V 75.9 10 0.00022 35.2 7.1 45 211-255 113-160 (442)
392 TIGR01316 gltA glutamate synth 75.8 5.2 0.00011 37.1 5.1 35 207-242 131-165 (449)
393 PRK08329 threonine synthase; V 75.8 13 0.00029 33.2 7.6 45 210-255 105-152 (347)
394 PRK12475 thiamine/molybdopteri 75.7 5.3 0.00012 35.7 5.0 34 208-242 23-57 (338)
395 PF00289 CPSase_L_chain: Carba 75.6 4.5 9.8E-05 29.9 3.8 36 210-246 3-38 (110)
396 TIGR00292 thiazole biosynthesi 75.6 4.5 9.8E-05 34.5 4.3 32 211-243 23-54 (254)
397 PRK08197 threonine synthase; V 75.5 7 0.00015 35.6 5.8 47 209-255 126-175 (394)
398 PRK11749 dihydropyrimidine deh 75.5 9.6 0.00021 35.3 6.9 49 205-254 269-326 (457)
399 PRK14176 bifunctional 5,10-met 75.4 14 0.0003 32.3 7.3 54 189-243 144-198 (287)
400 PF02254 TrkA_N: TrkA-N domain 75.0 12 0.00026 27.1 6.1 55 202-256 56-112 (116)
401 PRK05562 precorrin-2 dehydroge 75.0 12 0.00025 31.5 6.5 34 208-242 24-57 (223)
402 cd00320 cpn10 Chaperonin 10 Kd 74.9 3.9 8.5E-05 29.3 3.2 25 133-157 35-68 (93)
403 PRK14180 bifunctional 5,10-met 74.8 15 0.00033 32.0 7.3 54 189-242 138-191 (282)
404 COG1179 Dinucleotide-utilizing 74.8 5.1 0.00011 34.1 4.3 33 208-241 29-62 (263)
405 PRK05597 molybdopterin biosynt 74.7 6 0.00013 35.6 5.1 34 208-242 27-61 (355)
406 COG0503 Apt Adenine/guanine ph 74.6 7.9 0.00017 31.2 5.3 36 205-240 112-150 (179)
407 KOG1481 Cysteine synthase [Ami 74.5 6.9 0.00015 34.0 5.1 53 202-255 93-148 (391)
408 PRK06382 threonine dehydratase 74.5 12 0.00027 34.2 7.2 43 213-255 76-121 (406)
409 PLN02823 spermine synthase 74.4 41 0.00089 30.1 10.2 43 208-252 103-146 (336)
410 TIGR01747 diampropi_NH3ly diam 74.4 8.2 0.00018 35.0 5.9 46 210-255 94-142 (376)
411 PRK08605 D-lactate dehydrogena 74.3 5.8 0.00012 35.3 4.8 36 208-244 145-181 (332)
412 PRK14177 bifunctional 5,10-met 74.3 16 0.00036 31.8 7.5 56 189-244 139-194 (284)
413 PRK06481 fumarate reductase fl 74.3 4.6 9.9E-05 38.1 4.4 31 212-243 64-94 (506)
414 PRK14179 bifunctional 5,10-met 74.2 14 0.0003 32.3 6.9 52 189-241 138-190 (284)
415 PRK06567 putative bifunctional 74.0 5.7 0.00012 40.5 5.1 35 207-242 381-415 (1028)
416 PRK07340 ornithine cyclodeamin 73.9 23 0.00049 31.1 8.4 45 207-252 123-170 (304)
417 PRK07688 thiamine/molybdopteri 73.9 6.4 0.00014 35.2 5.0 33 209-242 24-57 (339)
418 PRK05600 thiamine biosynthesis 73.9 6.2 0.00013 35.8 5.0 34 208-242 40-74 (370)
419 PRK09853 putative selenate red 73.9 5.4 0.00012 40.9 5.0 35 207-242 537-571 (1019)
420 PLN02712 arogenate dehydrogena 73.7 9.8 0.00021 37.3 6.6 45 208-254 368-412 (667)
421 PRK08618 ornithine cyclodeamin 73.6 20 0.00044 31.7 8.1 41 207-248 125-167 (325)
422 PLN02927 antheraxanthin epoxid 73.6 5.4 0.00012 39.1 4.8 37 206-243 78-114 (668)
423 TIGR01381 E1_like_apg7 E1-like 73.3 5.9 0.00013 38.5 4.8 33 208-241 337-370 (664)
424 TIGR00521 coaBC_dfp phosphopan 73.2 6.8 0.00015 35.8 5.1 36 207-242 183-234 (390)
425 COG2519 GCD14 tRNA(1-methylade 73.2 16 0.00035 31.2 6.9 47 202-250 88-136 (256)
426 TIGR00263 trpB tryptophan synt 73.2 13 0.00027 33.9 6.8 46 210-255 99-150 (385)
427 smart00650 rADc Ribosomal RNA 73.1 18 0.00038 28.5 7.0 47 202-251 7-53 (169)
428 PF00291 PALP: Pyridoxal-phosp 73.0 9 0.0002 33.1 5.7 47 208-255 55-104 (306)
429 PRK07121 hypothetical protein; 72.9 5.6 0.00012 37.3 4.6 31 212-243 23-53 (492)
430 PRK12779 putative bifunctional 72.8 10 0.00022 38.9 6.6 34 208-242 446-479 (944)
431 PRK10258 biotin biosynthesis p 72.8 17 0.00037 30.5 7.2 45 205-252 39-83 (251)
432 COG0059 IlvC Ketol-acid reduct 72.8 8.6 0.00019 33.8 5.3 48 207-255 16-64 (338)
433 PRK14173 bifunctional 5,10-met 72.7 17 0.00037 31.7 7.2 55 189-244 135-190 (287)
434 PLN02852 ferredoxin-NADP+ redu 72.7 6.5 0.00014 37.1 4.9 36 207-243 24-61 (491)
435 PRK11749 dihydropyrimidine deh 72.6 6.4 0.00014 36.5 4.9 35 207-242 138-172 (457)
436 COG0499 SAM1 S-adenosylhomocys 72.6 7.6 0.00017 35.0 5.0 40 206-246 206-245 (420)
437 cd01079 NAD_bind_m-THF_DH NAD 72.5 16 0.00035 30.0 6.6 51 189-240 33-93 (197)
438 PRK01683 trans-aconitate 2-met 72.5 13 0.00027 31.5 6.4 48 202-251 25-73 (258)
439 PRK12778 putative bifunctional 72.1 6.8 0.00015 38.9 5.2 35 207-242 429-463 (752)
440 cd06446 Trp-synth_B Tryptophan 72.0 8.8 0.00019 34.6 5.5 45 211-255 84-134 (365)
441 TIGR03840 TMPT_Se_Te thiopurin 72.0 11 0.00025 31.2 5.8 41 206-249 32-72 (213)
442 PRK14187 bifunctional 5,10-met 71.9 18 0.00039 31.7 7.1 55 189-243 140-194 (294)
443 PRK01581 speE spermidine synth 71.9 13 0.00027 33.8 6.3 43 207-251 149-192 (374)
444 TIGR03315 Se_ygfK putative sel 71.9 6.5 0.00014 40.4 5.0 34 208-242 536-569 (1012)
445 PLN02516 methylenetetrahydrofo 71.8 18 0.00039 31.8 7.2 56 188-243 146-201 (299)
446 PLN02336 phosphoethanolamine N 71.8 11 0.00024 35.1 6.3 47 203-251 261-307 (475)
447 TIGR00260 thrC threonine synth 71.8 7.8 0.00017 34.2 5.1 47 209-255 70-120 (328)
448 PRK11199 tyrA bifunctional cho 71.7 22 0.00047 32.2 8.0 35 209-243 98-132 (374)
449 cd01485 E1-1_like Ubiquitin ac 71.7 7.8 0.00017 31.7 4.7 33 209-242 19-52 (198)
450 PRK14178 bifunctional 5,10-met 71.7 21 0.00045 31.0 7.5 58 189-247 132-190 (279)
451 COG4122 Predicted O-methyltran 71.6 11 0.00023 31.6 5.5 51 203-255 54-110 (219)
452 TIGR02079 THD1 threonine dehyd 71.5 17 0.00036 33.4 7.3 43 213-255 67-112 (409)
453 TIGR02752 MenG_heptapren 2-hep 71.4 16 0.00035 30.1 6.7 47 202-250 39-87 (231)
454 PRK08206 diaminopropionate amm 71.3 12 0.00027 34.1 6.4 43 213-255 119-164 (399)
455 PRK07591 threonine synthase; V 71.3 9.9 0.00022 35.0 5.8 44 212-255 139-185 (421)
456 KOG2018 Predicted dinucleotide 71.1 7.1 0.00015 34.5 4.4 33 208-241 73-106 (430)
457 PLN02233 ubiquinone biosynthes 71.0 15 0.00032 31.5 6.4 46 203-250 68-115 (261)
458 PRK14169 bifunctional 5,10-met 71.0 23 0.00049 30.9 7.5 54 189-242 136-189 (282)
459 PRK14896 ksgA 16S ribosomal RN 70.9 15 0.00032 31.3 6.4 47 202-251 23-69 (258)
460 PRK14166 bifunctional 5,10-met 70.9 22 0.00049 30.9 7.5 54 189-242 137-190 (282)
461 TIGR02992 ectoine_eutC ectoine 70.6 28 0.00061 30.8 8.3 41 207-248 127-169 (326)
462 KOG0029 Amine oxidase [Seconda 70.5 7.2 0.00016 36.9 4.7 35 208-243 14-48 (501)
463 KOG2862 Alanine-glyoxylate ami 70.3 8.8 0.00019 33.9 4.8 36 206-242 89-124 (385)
464 PLN02781 Probable caffeoyl-CoA 70.2 13 0.00028 31.3 5.8 48 202-251 62-111 (234)
465 PRK04457 spermidine synthase; 70.1 15 0.00032 31.5 6.2 44 207-252 65-109 (262)
466 PRK14186 bifunctional 5,10-met 70.1 22 0.00047 31.3 7.2 54 189-243 138-192 (297)
467 PRK06450 threonine synthase; V 70.0 19 0.00042 32.1 7.2 45 211-255 98-145 (338)
468 PRK05225 ketol-acid reductoiso 69.8 4.6 0.0001 37.6 3.2 34 207-241 34-67 (487)
469 PLN02366 spermidine synthase 69.8 11 0.00024 33.3 5.5 43 207-251 90-133 (308)
470 PF13738 Pyr_redox_3: Pyridine 69.7 8.8 0.00019 30.8 4.6 37 207-244 165-201 (203)
471 PLN02569 threonine synthase 69.6 25 0.00054 33.1 8.1 44 212-255 189-236 (484)
472 cd01492 Aos1_SUMO Ubiquitin ac 69.5 9 0.00019 31.4 4.6 33 209-242 21-54 (197)
473 PRK07411 hypothetical protein; 69.3 8.1 0.00017 35.3 4.7 33 209-242 38-71 (390)
474 TIGR00563 rsmB ribosomal RNA s 69.2 20 0.00043 33.0 7.3 45 204-250 234-279 (426)
475 PRK07878 molybdopterin biosynt 69.1 8.1 0.00018 35.3 4.6 34 208-242 41-75 (392)
476 KOG0820 Ribosomal RNA adenine 69.0 15 0.00033 31.9 5.9 51 199-252 49-99 (315)
477 PRK14170 bifunctional 5,10-met 69.0 24 0.00051 30.8 7.2 54 189-243 137-191 (284)
478 PLN02712 arogenate dehydrogena 68.7 15 0.00034 36.0 6.7 44 209-254 52-95 (667)
479 PRK13810 orotate phosphoribosy 68.6 26 0.00056 28.5 7.1 51 204-254 117-174 (187)
480 PRK14183 bifunctional 5,10-met 68.5 26 0.00057 30.5 7.4 52 189-241 137-189 (281)
481 PRK14184 bifunctional 5,10-met 68.3 27 0.00058 30.5 7.4 58 189-246 137-198 (286)
482 PRK08291 ectoine utilization p 68.3 37 0.0008 30.1 8.6 42 207-249 130-173 (330)
483 PLN00093 geranylgeranyl diphos 68.3 7.5 0.00016 36.1 4.4 32 211-243 41-72 (450)
484 TIGR03528 2_3_DAP_am_ly diamin 68.2 13 0.00029 33.9 5.9 44 212-255 115-161 (396)
485 PLN02476 O-methyltransferase 68.2 13 0.00028 32.3 5.4 52 202-255 112-169 (278)
486 PRK14171 bifunctional 5,10-met 67.9 26 0.00056 30.6 7.2 53 189-242 139-192 (288)
487 PF02475 Met_10: Met-10+ like- 67.8 7.1 0.00015 32.2 3.6 45 205-251 98-143 (200)
488 PRK10742 putative methyltransf 67.8 16 0.00034 31.2 5.8 48 202-250 80-127 (250)
489 COG0281 SfcA Malic enzyme [Ene 67.8 20 0.00044 32.9 6.7 50 192-242 182-234 (432)
490 PLN02463 lycopene beta cyclase 67.7 8.1 0.00018 35.9 4.4 32 211-243 30-61 (447)
491 TIGR02813 omega_3_PfaA polyket 67.3 10 0.00022 42.9 5.6 37 206-242 1994-2031(2582)
492 KOG0069 Glyoxylate/hydroxypyru 67.1 11 0.00025 33.5 5.0 47 207-254 160-206 (336)
493 PRK12770 putative glutamate sy 67.0 16 0.00036 32.4 6.2 33 208-241 171-204 (352)
494 PRK09224 threonine dehydratase 67.0 22 0.00048 33.6 7.3 43 213-255 71-116 (504)
495 PRK04192 V-type ATP synthase s 67.0 19 0.00041 34.7 6.7 54 191-245 209-264 (586)
496 PRK14182 bifunctional 5,10-met 66.9 29 0.00063 30.2 7.3 54 189-243 137-191 (282)
497 TIGR00438 rrmJ cell division p 66.6 14 0.00031 29.6 5.2 40 203-244 27-68 (188)
498 PRK07804 L-aspartate oxidase; 66.5 8.6 0.00019 36.6 4.5 31 212-243 19-49 (541)
499 PF03059 NAS: Nicotianamine sy 66.3 12 0.00027 32.4 5.0 41 210-251 122-164 (276)
500 PRK12778 putative bifunctional 66.1 14 0.0003 36.8 6.0 36 206-242 567-603 (752)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=6.2e-44 Score=310.66 Aligned_cols=185 Identities=38% Similarity=0.597 Sum_probs=175.8
Q ss_pred cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
++|||+++.+++.| +++++++.|+|+++||+|+|+|+|+|++|+|.+.|.++...+|+++|||.+|+|+++|++|++|
T Consensus 2 ~~mkA~~~~~~~~p--l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~ 79 (339)
T COG1064 2 MTMKAAVLKKFGQP--LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGL 79 (339)
T ss_pred cceEEEEEccCCCC--ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccC
Confidence 57999999999888 8899999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCEEEE-eC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416 148 TVGDIIAY-AG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL 200 (256)
Q Consensus 148 ~~Gd~V~~-~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l 200 (256)
++||||.+ +. ..+|+|+||+++|+.+++++|+++++++||.+.+++.|.|.+|
T Consensus 80 k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al 159 (339)
T COG1064 80 KVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL 159 (339)
T ss_pred CCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh
Confidence 99999987 21 1269999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+. .+++||++|+|.| .|++|.+++|+|+.+|++|++++++++|++++++||||+
T Consensus 160 k~-~~~~pG~~V~I~G-~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~ 213 (339)
T COG1064 160 KK-ANVKPGKWVAVVG-AGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH 213 (339)
T ss_pred hh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE
Confidence 77 7999999999999 589999999999999999999999999999999999985
No 2
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=293.88 Aligned_cols=187 Identities=48% Similarity=0.664 Sum_probs=175.9
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCC-CCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-YKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++.++.+++|+.+++++.|.|.|++|||||||+++++|+.|++.+.|. .+..++|.++|.|++|+|+++|++|+.++
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 78999999999988999999999999999999999999999999999997 34456899999999999999999999999
Q ss_pred CCCEEEEeC-C-CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHH
Q 036416 149 VGDIIAYAG-G-AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC 226 (256)
Q Consensus 149 ~Gd~V~~~~-~-~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai 226 (256)
+||||+... . .+|+|+||+.+|++.++++|+++++++||++++.++|||+++....++++|++|||+||+|++|++++
T Consensus 81 ~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~ai 160 (326)
T COG0604 81 VGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAI 160 (326)
T ss_pred CCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHH
Confidence 999999984 2 35999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 227 QWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 227 ~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
|+||.+|+.+++++.++++.++++++|||+
T Consensus 161 QlAk~~G~~~v~~~~s~~k~~~~~~lGAd~ 190 (326)
T COG0604 161 QLAKALGATVVAVVSSSEKLELLKELGADH 190 (326)
T ss_pred HHHHHcCCcEEEEecCHHHHHHHHhcCCCE
Confidence 999999988888888888888999999985
No 3
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=260.01 Aligned_cols=190 Identities=53% Similarity=0.858 Sum_probs=182.5
Q ss_pred cccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCC
Q 036416 66 RTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLT 145 (256)
Q Consensus 66 ~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~ 145 (256)
.|+..|-+++++.|+++.+++++.|.|+|.++|+.||..|+|+|+.|.+.+.|.+...+.|+++|.|++|+|+++|++|+
T Consensus 5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt 84 (336)
T KOG1197|consen 5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT 84 (336)
T ss_pred CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCcc
Confidence 34557999999999999999999999999999999999999999999999999996667899999999999999999999
Q ss_pred ccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHH
Q 036416 146 GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLL 225 (256)
Q Consensus 146 ~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~a 225 (256)
++++||||..+. ..|.|+|+..+|...+.++|+.+++++||++.+.++|||..+++..++++|++||||.|+|++|+++
T Consensus 85 drkvGDrVayl~-~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll 163 (336)
T KOG1197|consen 85 DRKVGDRVAYLN-PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLL 163 (336)
T ss_pred ccccccEEEEec-cchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHH
Confidence 999999999988 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 226 CQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 226 i~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+|+++..|+.+|+++++++|.+.+|+.||+|
T Consensus 164 ~Ql~ra~~a~tI~~asTaeK~~~akenG~~h 194 (336)
T KOG1197|consen 164 CQLLRAVGAHTIATASTAEKHEIAKENGAEH 194 (336)
T ss_pred HHHHHhcCcEEEEEeccHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999986
No 4
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=5.5e-38 Score=269.05 Aligned_cols=185 Identities=30% Similarity=0.331 Sum_probs=173.8
Q ss_pred cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
+++++.++.+++.| ++++++.+++|++||||||+.++|+|++|.+.++|..|.. +|.++|||++|+|++||++|+++
T Consensus 1 mk~~aAV~~~~~~P--l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~v 77 (366)
T COG1062 1 MKTRAAVAREAGKP--LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSV 77 (366)
T ss_pred CCceEeeeecCCCC--eEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCcccc
Confidence 35789999988877 9999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred CCCCEEEEeCC---------------------------------------------CC--cceeeEEEecCCCeEECCCC
Q 036416 148 TVGDIIAYAGG---------------------------------------------AM--GSYAEEQILPANKVVPVPSS 180 (256)
Q Consensus 148 ~~Gd~V~~~~~---------------------------------------------~~--G~~a~~~~v~~~~~~~ip~~ 180 (256)
+|||.|+.... .. ++|+||.++++.++++++++
T Consensus 78 kpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~ 157 (366)
T COG1062 78 KPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPD 157 (366)
T ss_pred CCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCC
Confidence 99999985320 11 49999999999999999999
Q ss_pred CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
.+++.++.+.+...|.+.+..+.+++++|++|.|+| .|++|++++|-|+..|| +||+++.+++|++++++|||||
T Consensus 158 ~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~ 233 (366)
T COG1062 158 APLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH 233 (366)
T ss_pred CCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce
Confidence 999999999999999999999999999999999999 89999999999999999 7999999999999999999986
No 5
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.2e-38 Score=265.10 Aligned_cols=191 Identities=25% Similarity=0.344 Sum_probs=174.4
Q ss_pred CCcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCC
Q 036416 64 RTRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPG 143 (256)
Q Consensus 64 ~~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~ 143 (256)
...|.+.++|.+..+++..++++.+++.|+++++||+|+|+|||||++|++.+.|.++...+|.++|||.+|+|+++|++
T Consensus 4 ~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~ 83 (360)
T KOG0023|consen 4 MSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSN 83 (360)
T ss_pred ccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCC
Confidence 34577799999999988888899999999999999999999999999999999999999899999999999999999999
Q ss_pred CCccCCCCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhh
Q 036416 144 LTGRTVGDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASI 189 (256)
Q Consensus 144 v~~~~~Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l 189 (256)
|++|++||||-+-. ...|+|++|+++++..+++||++++.+.||.+
T Consensus 84 V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPl 163 (360)
T KOG0023|consen 84 VTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPL 163 (360)
T ss_pred cccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccch
Confidence 99999999995410 01366999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hhHHHHHhCCCCC
Q 036416 190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK-EKAAQAKDDGCHH 256 (256)
Q Consensus 190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~-~~~~~~~~~Ga~~ 256 (256)
.++..|+|.+|.+ .++.||++|.|.|+ |++|.+++|+|+++|.+|+++++++ +|.+.++.||||+
T Consensus 164 LCaGITvYspLk~-~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~ 229 (360)
T KOG0023|consen 164 LCAGITVYSPLKR-SGLGPGKWVGIVGL-GGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV 229 (360)
T ss_pred hhcceEEeehhHH-cCCCCCcEEEEecC-cccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce
Confidence 9999999999976 58999999999995 7799999999999999999999987 6667778899984
No 6
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-37 Score=264.81 Aligned_cols=183 Identities=27% Similarity=0.239 Sum_probs=164.8
Q ss_pred cceEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCC
Q 036416 68 NMVKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPG 143 (256)
Q Consensus 68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~ 143 (256)
.+|+|+++.+ +.++++++.|.|++ .|+||+|+++++|||++|+|++...... -+.|+++|||.+|+|+++|++
T Consensus 3 ~~~~A~vl~g---~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~ 79 (354)
T KOG0024|consen 3 ADNLALVLRG---KGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDE 79 (354)
T ss_pred cccceeEEEc---cCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccc
Confidence 4589999994 45599999999988 9999999999999999999999876544 347999999999999999999
Q ss_pred CCccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHH
Q 036416 144 LTGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA 196 (256)
Q Consensus 144 v~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta 196 (256)
|+++++||||+.-+ +.+|++++|++.+++.++|+||+++++++|.+. ++..+
T Consensus 80 Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLsV~ 158 (354)
T KOG0024|consen 80 VKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PLSVG 158 (354)
T ss_pred ccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhccccc-chhhh
Confidence 99999999998642 236999999999999999999999999998654 58899
Q ss_pred HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
|++.+. +++++|++|||+| +|++|+++...||.+|| +|++++..+.|++++|+|||+.
T Consensus 159 ~HAcr~-~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~ 217 (354)
T KOG0024|consen 159 VHACRR-AGVKKGSKVLVLG-AGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV 217 (354)
T ss_pred hhhhhh-cCcccCCeEEEEC-CcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence 999854 7999999999999 59999999999999999 7999999999999999999974
No 7
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-36 Score=254.78 Aligned_cols=187 Identities=29% Similarity=0.339 Sum_probs=175.1
Q ss_pred ccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416 67 TNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 67 ~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
..++||.+..+++.| |.++++.+++|+.+||+||+.++++|++|.+.+.|..+...+|.++|||++|+|+++|++|++
T Consensus 5 vI~CKAAV~w~a~~P--L~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~ 82 (375)
T KOG0022|consen 5 VITCKAAVAWEAGKP--LVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT 82 (375)
T ss_pred ceEEeEeeeccCCCC--eeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence 456999999988887 999999999999999999999999999999999999888889999999999999999999999
Q ss_pred cCCCCEEEEeCC----------------------------------------------CC--cceeeEEEecCCCeEECC
Q 036416 147 RTVGDIIAYAGG----------------------------------------------AM--GSYAEEQILPANKVVPVP 178 (256)
Q Consensus 147 ~~~Gd~V~~~~~----------------------------------------------~~--G~~a~~~~v~~~~~~~ip 178 (256)
+++||+|+.+.. .. .+|+||.+++...+++++
T Consensus 83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId 162 (375)
T KOG0022|consen 83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID 162 (375)
T ss_pred cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence 999999985320 01 389999999999999999
Q ss_pred CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+..+++.++.|.+...|+|.+..+.+++++|++|.|+| .|++|+++++-||+.|| +||++|-+++|.+.+|+|||+|
T Consensus 163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence 99999999999999999999988999999999999999 79999999999999999 8999999999999999999986
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=5.3e-35 Score=264.05 Aligned_cols=189 Identities=24% Similarity=0.279 Sum_probs=169.5
Q ss_pred CcccceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCC
Q 036416 65 TRTNMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPG 143 (256)
Q Consensus 65 ~~~~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~ 143 (256)
..+.+||++++.+++.+ +.+++++.|.|+++||+|||.++|||++|++.+.|..+. ..+|.++|||++|+|+++|++
T Consensus 6 ~~~~~mka~~~~~~~~~--~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~ 83 (381)
T PLN02740 6 GKVITCKAAVAWGPGEP--LVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG 83 (381)
T ss_pred ccceeeEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCC
Confidence 34567999999976543 778899999999999999999999999999999887542 347899999999999999999
Q ss_pred CCccCCCCEEEEeCC--------------------------------------------------CCcceeeEEEecCCC
Q 036416 144 LTGRTVGDIIAYAGG--------------------------------------------------AMGSYAEEQILPANK 173 (256)
Q Consensus 144 v~~~~~Gd~V~~~~~--------------------------------------------------~~G~~a~~~~v~~~~ 173 (256)
++++++||||++... ..|+|+||+++|...
T Consensus 84 v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~ 163 (381)
T PLN02740 84 VEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSAC 163 (381)
T ss_pred CCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHH
Confidence 999999999987421 148999999999999
Q ss_pred eEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhC
Q 036416 174 VVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 174 ~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~ 252 (256)
++++|+++++++++.+++.+.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++
T Consensus 164 ~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~ 242 (381)
T PLN02740 164 VVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM 242 (381)
T ss_pred eEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc
Confidence 9999999999999999999999999887778999999999999 59999999999999999 699999999999999999
Q ss_pred CCCC
Q 036416 253 GCHH 256 (256)
Q Consensus 253 Ga~~ 256 (256)
|+++
T Consensus 243 Ga~~ 246 (381)
T PLN02740 243 GITD 246 (381)
T ss_pred CCcE
Confidence 9863
No 9
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=6.9e-35 Score=262.38 Aligned_cols=185 Identities=30% Similarity=0.374 Sum_probs=168.6
Q ss_pred eEEEEEcccCC------CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCC
Q 036416 70 VKAIRVYEHGD------PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPG 143 (256)
Q Consensus 70 ~~a~~~~~~~~------~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~ 143 (256)
|||+++.++|. ++.+++++.|.|+|+++||+|||.+++||++|++.+.|..+. .+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence 79999998876 478999999999999999999999999999999999887643 46899999999999999999
Q ss_pred CCccCCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEE
Q 036416 144 LTGRTVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVP 176 (256)
Q Consensus 144 v~~~~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ 176 (256)
++++++||||++... ..|+|+||+.+|...+++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~ 159 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVK 159 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEE
Confidence 999999999986321 026899999999999999
Q ss_pred CCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 177 VPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 177 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|+++++++|+.+++.+.|||+++...+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+|
T Consensus 160 lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 238 (371)
T cd08281 160 IDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT 238 (371)
T ss_pred CCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence 9999999999999999999999987778899999999998 59999999999999999 699999999999999999997
Q ss_pred C
Q 036416 256 H 256 (256)
Q Consensus 256 ~ 256 (256)
+
T Consensus 239 ~ 239 (371)
T cd08281 239 A 239 (371)
T ss_pred e
Confidence 4
No 10
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=1.1e-34 Score=260.90 Aligned_cols=184 Identities=26% Similarity=0.299 Sum_probs=167.6
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++...+. .++++++|.|+|+++||+|||.++|+|++|++.+.|.++...+|.++|||++|+|+++|++++++++
T Consensus 2 ~~a~~~~~~~~--~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~ 79 (368)
T TIGR02818 2 SRAAVAWAAGQ--PLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKV 79 (368)
T ss_pred ceEEEEecCCC--CeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCC
Confidence 89999887654 4888999999999999999999999999999999987765567899999999999999999999999
Q ss_pred CCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCCC
Q 036416 150 GDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSID 182 (256)
Q Consensus 150 Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~~ 182 (256)
||||++... ..|+|+||+++|...++++|++++
T Consensus 80 GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~ 159 (368)
T TIGR02818 80 GDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAP 159 (368)
T ss_pred CCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCC
Confidence 999987421 026899999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++++.+++++.|||+++.+.+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus 160 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~ 233 (368)
T TIGR02818 160 LEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD 233 (368)
T ss_pred HHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe
Confidence 9999999999999999988778999999999998 59999999999999999 7999999999999999999863
No 11
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=3.2e-34 Score=257.71 Aligned_cols=184 Identities=27% Similarity=0.297 Sum_probs=168.2
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
+|||+++..++.+ +++++++.|+|+++||+||+.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++++
T Consensus 2 ~~ka~~~~~~~~~--~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 79 (369)
T cd08301 2 TCKAAVAWEAGKP--LVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLK 79 (369)
T ss_pred ccEEEEEecCCCC--cEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCccc
Confidence 6999999876544 88899999999999999999999999999999998776556799999999999999999999999
Q ss_pred CCCEEEEeCC------------------------------------------------CCcceeeEEEecCCCeEECCCC
Q 036416 149 VGDIIAYAGG------------------------------------------------AMGSYAEEQILPANKVVPVPSS 180 (256)
Q Consensus 149 ~Gd~V~~~~~------------------------------------------------~~G~~a~~~~v~~~~~~~ip~~ 180 (256)
+||||++... ..|+|+||++++...++++|++
T Consensus 80 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 159 (369)
T cd08301 80 PGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPE 159 (369)
T ss_pred cCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCC
Confidence 9999987521 1378999999999999999999
Q ss_pred CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++++++.+++.+.|+|+++...+++++|++|||+| +|++|++++|+|+.+|+ +|++++++++|+++++++|++
T Consensus 160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~ 234 (369)
T cd08301 160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVT 234 (369)
T ss_pred CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 999999999999999999887778999999999998 59999999999999999 799999999999999999986
No 12
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=4.4e-34 Score=253.33 Aligned_cols=182 Identities=29% Similarity=0.337 Sum_probs=163.8
Q ss_pred EEEcccCCC--CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416 73 IRVYEHGDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG 150 (256)
Q Consensus 73 ~~~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G 150 (256)
+.+..++.+ +.++++++|.|+|+++||+|||.++|+|++|++.+.|.++...+|.++|||++|+|+++|++++++++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG 81 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence 456666655 568999999999999999999999999999999999876544457899999999999999999999999
Q ss_pred CEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 151 DIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 151 d~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
|+|++.. ..+|+|+||+.+|...++++|+++++++++.+++.+.|||+++. .
T Consensus 82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~-~ 160 (329)
T TIGR02822 82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALL-R 160 (329)
T ss_pred CEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHH-h
Confidence 9997521 12489999999999999999999999999999999999999986 4
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++++|++|||+|+ |++|++++|+|+.+|++|++++++++|+++++++|||+
T Consensus 161 ~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~ 212 (329)
T TIGR02822 161 ASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS 212 (329)
T ss_pred cCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce
Confidence 78999999999995 99999999999999999999999999999999999974
No 13
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=3.1e-34 Score=256.92 Aligned_cols=184 Identities=29% Similarity=0.419 Sum_probs=167.3
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||++++++++.+ +++++.|.|+|+++||+|||.++++|++|++.+.|.++. .+|.++|||++|+|+++|+++++++
T Consensus 1 ~mka~~~~~~~~~--~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~ 77 (358)
T TIGR03451 1 TVRGVIARSKGAP--VELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVA 77 (358)
T ss_pred CcEEEEEccCCCC--CEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccC
Confidence 5999999988765 788999999999999999999999999999999887543 3789999999999999999999999
Q ss_pred CCCEEEEeC---------------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhh
Q 036416 149 VGDIIAYAG---------------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASI 189 (256)
Q Consensus 149 ~Gd~V~~~~---------------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l 189 (256)
+||+|++.. ...|+|+||+.+|...++++|+++++++++.+
T Consensus 78 ~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l 157 (358)
T TIGR03451 78 PGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLL 157 (358)
T ss_pred CCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhh
Confidence 999998621 01489999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416 190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
++.+.|+|.++.+.+++++|++|||+| +|++|++++|+|+.+|++ |++++.+++|+++++++|+|+
T Consensus 158 ~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~ 224 (358)
T TIGR03451 158 GCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH 224 (358)
T ss_pred cccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence 999999998887778899999999998 599999999999999995 999999999999999999863
No 14
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=9.9e-34 Score=254.60 Aligned_cols=185 Identities=28% Similarity=0.332 Sum_probs=167.6
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
+||++++...+. .+++++.|.|.|+++||+||+.++|+|++|++.+.|.++...+|.++|||++|+|+++|+++++++
T Consensus 2 ~~~a~~~~~~~~--~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 79 (368)
T cd08300 2 TCKAAVAWEAGK--PLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVK 79 (368)
T ss_pred cceEEEEecCCC--CcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCC
Confidence 489999886554 488899999999999999999999999999999998776556899999999999999999999999
Q ss_pred CCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCC
Q 036416 149 VGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSI 181 (256)
Q Consensus 149 ~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~ 181 (256)
+||+|++... ..|+|+||+.++...++++|+++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l 159 (368)
T cd08300 80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA 159 (368)
T ss_pred CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence 9999987411 13689999999999999999999
Q ss_pred CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
++++++.+++.+.|||+++...+++++|++|||+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus 160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~ 234 (368)
T cd08300 160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD 234 (368)
T ss_pred ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCE
Confidence 99999999999999999987778899999999998 59999999999999999 7999999999999999999863
No 15
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=9.2e-34 Score=254.20 Aligned_cols=186 Identities=21% Similarity=0.283 Sum_probs=159.8
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++.+...+.++.+++.+++.|.|+++||+|||.++|||++|++.+.|.++...+|.++|||++|+|+++|++|+++++
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~v 90 (360)
T PLN02586 11 QKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKE 90 (360)
T ss_pred hheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCccCC
Confidence 44444444445556888899999999999999999999999999999887654457899999999999999999999999
Q ss_pred CCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHH
Q 036416 150 GDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT 195 (256)
Q Consensus 150 Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~t 195 (256)
||+|++.. ..+|+|+||+++|.+.++++|+++++++++.+++.+.|
T Consensus 91 GdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~t 170 (360)
T PLN02586 91 GDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGIT 170 (360)
T ss_pred CCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHH
Confidence 99997421 01589999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCCCC
Q 036416 196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGCHH 256 (256)
Q Consensus 196 a~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga~~ 256 (256)
+|+++.....+++|++|+|.| +|++|++++|+|+.+|++|++++.++++ .+.++++|+++
T Consensus 171 a~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~ 231 (360)
T PLN02586 171 VYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADS 231 (360)
T ss_pred HHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcE
Confidence 999987766778999999988 6999999999999999999988877665 45668999863
No 16
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=2.9e-33 Score=248.41 Aligned_cols=182 Identities=32% Similarity=0.381 Sum_probs=163.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||+++.+ ++.+++++++.|.|+++||+||+.++++|++|++.+.+.... ..+|.++|||++|+|+++|++|++++
T Consensus 1 mka~~~~~---~~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 77 (339)
T cd08239 1 MRGAVFPG---DRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFR 77 (339)
T ss_pred CeEEEEec---CCceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCC
Confidence 78999984 456999999999999999999999999999999988776432 23578999999999999999999999
Q ss_pred CCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416 149 VGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR 201 (256)
Q Consensus 149 ~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~ 201 (256)
+||+|+.... .+|+|+||+.+|...++++|+++++++++.+++++.|||+++.
T Consensus 78 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~ 157 (339)
T cd08239 78 VGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALR 157 (339)
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHH
Confidence 9999987531 2589999999999999999999999999999999999999985
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
. +++++|++|||+| +|++|++++|+|+.+|++ |++++.+++|+++++++|+++
T Consensus 158 ~-~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~ 211 (339)
T cd08239 158 R-VGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF 211 (339)
T ss_pred h-cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence 4 6889999999998 599999999999999998 999999999999999999863
No 17
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=8.1e-33 Score=248.40 Aligned_cols=184 Identities=25% Similarity=0.285 Sum_probs=167.0
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
+||++++...+. .++++++|.|.++++||+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++++
T Consensus 2 ~~ka~~~~~~~~--~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08277 2 KCKAAVAWEAGK--PLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLK 78 (365)
T ss_pred ccEEEEEccCCC--CcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCC
Confidence 489999987654 388899999999999999999999999999999988765 44789999999999999999999999
Q ss_pred CCCEEEEeCC----------------------------------------------CCcceeeEEEecCCCeEECCCCCC
Q 036416 149 VGDIIAYAGG----------------------------------------------AMGSYAEEQILPANKVVPVPSSID 182 (256)
Q Consensus 149 ~Gd~V~~~~~----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~~ 182 (256)
+||+|++... ..|+|+||+.++...++++|++++
T Consensus 79 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~ 158 (365)
T cd08277 79 PGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAP 158 (365)
T ss_pred CCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCC
Confidence 9999987521 137899999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++++.+++++.|||+++...+++++|++|+|+| +|++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus 159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~ 232 (365)
T cd08277 159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD 232 (365)
T ss_pred HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCc
Confidence 9999999999999999887778999999999998 69999999999999999 7999999999999999999864
No 18
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=1.5e-32 Score=247.96 Aligned_cols=183 Identities=26% Similarity=0.246 Sum_probs=162.9
Q ss_pred cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
.+||++++.+++ +.+++++.|.|.|+++||+|||.++|+|++|++.+.|.. .+|.++|||++|+|+++|++++++
T Consensus 11 ~~mka~~~~~~~--~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~ 85 (378)
T PLN02827 11 ITCRAAVAWGAG--EALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEF 85 (378)
T ss_pred ceeEEEEEecCC--CCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCccc
Confidence 459999998543 348889999999999999999999999999999887742 367899999999999999999999
Q ss_pred CCCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCC
Q 036416 148 TVGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSS 180 (256)
Q Consensus 148 ~~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~ 180 (256)
++||+|++... ..|+|+||+.+|...++++|++
T Consensus 86 ~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~ 165 (378)
T PLN02827 86 EKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPL 165 (378)
T ss_pred CCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCC
Confidence 99999987531 1279999999999999999999
Q ss_pred CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++++++.+.+.+.++|+++...+++++|++|||+| +|++|++++|+|+.+|+ .|++++.+++|.++++++|+++
T Consensus 166 l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~ 241 (378)
T PLN02827 166 APLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD 241 (378)
T ss_pred CCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence 999999988888899998776777899999999998 59999999999999999 5888888899999999999863
No 19
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=100.00 E-value=5.8e-33 Score=232.37 Aligned_cols=193 Identities=29% Similarity=0.432 Sum_probs=178.3
Q ss_pred CCcccceEEEEEcccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeC
Q 036416 64 RTRTNMVKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVG 141 (256)
Q Consensus 64 ~~~~~~~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG 141 (256)
...+...|+++++.+|+| +.++++++++|+...++|+||..++.|||+|+..++|.+|. +++|.+-|.|++|+|+.+|
T Consensus 14 ~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vG 93 (354)
T KOG0025|consen 14 SQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVG 93 (354)
T ss_pred cccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEec
Confidence 344555799999999988 66888999999998888999999999999999999999987 6789999999999999999
Q ss_pred CCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChH
Q 036416 142 PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGV 221 (256)
Q Consensus 142 ~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~v 221 (256)
+++++|++||+|+......|+|++|.+.+++.++++++.++++.||++....+|||..|.+.-++++||+|+-.||++++
T Consensus 94 s~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~V 173 (354)
T KOG0025|consen 94 SNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGV 173 (354)
T ss_pred CCcCccCCCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEeCChhhH----HHHHhCCCCC
Q 036416 222 GSLLCQWANALGATVIGTVSTKEKA----AQAKDDGCHH 256 (256)
Q Consensus 222 G~~ai~la~~~ga~Vi~~~~~~~~~----~~~~~~Ga~~ 256 (256)
|.+++|+|+++|.+-|-++++.... +.++.+||||
T Consensus 174 G~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ 212 (354)
T KOG0025|consen 174 GQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATE 212 (354)
T ss_pred HHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCce
Confidence 9999999999999988888875544 4557899986
No 20
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=2.3e-32 Score=246.41 Aligned_cols=186 Identities=22% Similarity=0.287 Sum_probs=160.6
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
.||+.+...+.+..+...+++.|.|+++||+|||.++|||++|++.+.|.++...+|.++|||++|+|+++|++++++++
T Consensus 5 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~v 84 (375)
T PLN02178 5 NKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKE 84 (375)
T ss_pred ceeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCC
Confidence 45666666666667888899999999999999999999999999999887644446899999999999999999999999
Q ss_pred CCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHH
Q 036416 150 GDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMT 195 (256)
Q Consensus 150 Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~t 195 (256)
||||.+.. ..+|+|+||+.+|++.++++|+++++++++.+++.+.|
T Consensus 85 GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~t 164 (375)
T PLN02178 85 GDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGIT 164 (375)
T ss_pred CCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchH
Confidence 99997421 01589999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCCCC
Q 036416 196 AQFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGCHH 256 (256)
Q Consensus 196 a~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga~~ 256 (256)
+|+++..... .++|++|+|.| +|++|++++|+|+.+|++|++++.++++ .++++++|+|+
T Consensus 165 a~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~ 226 (375)
T PLN02178 165 VYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADS 226 (375)
T ss_pred HHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcE
Confidence 9998866533 36899999998 5999999999999999999999877554 78889999974
No 21
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=100.00 E-value=1.9e-32 Score=241.95 Aligned_cols=185 Identities=31% Similarity=0.500 Sum_probs=163.9
Q ss_pred eEEEEEcccCCC---CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCC
Q 036416 70 VKAIRVYEHGDP---EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLT 145 (256)
Q Consensus 70 ~~a~~~~~~~~~---~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~ 145 (256)
||++++++++.| +.+++.+.|.|.|+++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 789999988776 57888899999999999999999999999999999887643 34689999999999999999999
Q ss_pred c-cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEe-cCCChHHH
Q 036416 146 G-RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQ-AAAGGVGS 223 (256)
Q Consensus 146 ~-~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-ga~g~vG~ 223 (256)
+ +++||+|++....+|+|++|+.+|.+.++++|+++++++++++++.+.|||..+ ...+. ++++++|+ +|+|++|+
T Consensus 81 ~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~ 158 (324)
T cd08291 81 AQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGR 158 (324)
T ss_pred ccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHH
Confidence 6 999999998754458999999999999999999999999999999999998554 44455 56667666 77999999
Q ss_pred HHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 224 LLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 224 ~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++|+|+.+|++|++++.+++|+++++++|+++
T Consensus 159 ~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~ 191 (324)
T cd08291 159 MLVRLCKADGIKVINIVRRKEQVDLLKKIGAEY 191 (324)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcE
Confidence 999999999999999999999999999999874
No 22
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=100.00 E-value=2.5e-32 Score=241.63 Aligned_cols=186 Identities=36% Similarity=0.406 Sum_probs=170.5
Q ss_pred EEEEEccc---CCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 71 KAIRVYEH---GDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 71 ~a~~~~~~---~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
||+++..+ ++++.++..+.|.|+|+++||+||+.++++|+.|+.++.|..+...+|.++|+|++|+|+++|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 57888887 778889999999999999999999999999999999888876555568899999999999999999999
Q ss_pred CCCCEEEEeC--CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC-----CCEEEEecCCCh
Q 036416 148 TVGDIIAYAG--GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP-----GHTVLIQAAAGG 220 (256)
Q Consensus 148 ~~Gd~V~~~~--~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~ga~g~ 220 (256)
++||+|+++. ...|+|++|+.++.+.++++|+++++++++.+++.+.|||+++...+++++ |++|||+|++|+
T Consensus 81 ~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~ 160 (336)
T TIGR02817 81 KPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGG 160 (336)
T ss_pred CCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcH
Confidence 9999999875 224899999999999999999999999999999999999999988888877 999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCCCC
Q 036416 221 VGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 221 vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+|++++|+|+.+ |++|+++++++++.++++++|+|+
T Consensus 161 vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 161 VGSILIQLARQLTGLTVIATASRPESQEWVLELGAHH 197 (336)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCE
Confidence 999999999998 999999999999999999999863
No 23
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-32 Score=240.64 Aligned_cols=179 Identities=18% Similarity=0.258 Sum_probs=153.9
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHh-CCCC--CCCCCCCCCcccEEEEEEeCCCCC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRK-GVYK--PAKMPFTPGMEAVGEVVAVGPGLT 145 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~~lG~e~~G~V~~vG~~v~ 145 (256)
.++++++. ++..+++++.+.| ++++||||||.++|||++|++++. |..+ ...+|.++|||++|+|+++ +++
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~ 77 (343)
T PRK09880 4 KTQSCVVA---GKKDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS 77 (343)
T ss_pred cceEEEEe---cCCceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence 47899998 5556999999987 689999999999999999999875 4332 2347899999999999999 788
Q ss_pred ccCCCCEEEEeC-------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHH
Q 036416 146 GRTVGDIIAYAG-------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM 194 (256)
Q Consensus 146 ~~~~Gd~V~~~~-------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ 194 (256)
+|++||||.+.+ ..+|+|+||++++++.++++|+++++++++ +...+.
T Consensus 78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~~ 156 (343)
T PRK09880 78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPLA 156 (343)
T ss_pred cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHHH
Confidence 999999998631 125999999999999999999999998655 456778
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 195 ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+||+++... ...+|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|+++++++|+++
T Consensus 157 ~a~~al~~~-~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~ 217 (343)
T PRK09880 157 VAIHAAHQA-GDLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK 217 (343)
T ss_pred HHHHHHHhc-CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE
Confidence 999998654 666899999999 59999999999999999 6999999999999999999974
No 24
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=8.1e-32 Score=244.15 Aligned_cols=180 Identities=23% Similarity=0.235 Sum_probs=153.4
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCC-------CCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPG-------EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGP 142 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~ 142 (256)
||++++.+++ .++++++|.|+|+ +|||||||.++|||++|++++.|..+. .+|.++|||++|+|+++|+
T Consensus 3 mka~v~~~~~---~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~ 78 (393)
T TIGR02819 3 NRGVVYLGPG---KVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA-PTGLVLGHEITGEVIEKGR 78 (393)
T ss_pred ceEEEEecCC---ceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC-CCCccccceeEEEEEEEcC
Confidence 8999998544 5889999999874 689999999999999999999886543 4689999999999999999
Q ss_pred CCCccCCCCEEEEeC------------------------------------CCCcceeeEEEecCC--CeEECCCCCCH-
Q 036416 143 GLTGRTVGDIIAYAG------------------------------------GAMGSYAEEQILPAN--KVVPVPSSIDP- 183 (256)
Q Consensus 143 ~v~~~~~Gd~V~~~~------------------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~- 183 (256)
+|+++++||||++.. ..+|+|+||+++|.. .++++|++++.
T Consensus 79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~ 158 (393)
T TIGR02819 79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQAL 158 (393)
T ss_pred ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCccccc
Confidence 999999999997631 024899999999964 69999998653
Q ss_pred ---HHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 184 ---VIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 184 ---~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.+++.+...+.++|+++.. +++++|++|+|.| +|++|++++|+|+.+|++ |++++.+++|+++++++|++
T Consensus 159 ~~~~~~a~l~~~~~ta~~a~~~-~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~ 232 (393)
T TIGR02819 159 EKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE 232 (393)
T ss_pred ccccceeeeccHHHHHHHHHHh-cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe
Confidence 3456677788999998854 6899999999977 699999999999999997 45556778899999999985
No 25
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=8.7e-32 Score=239.73 Aligned_cols=178 Identities=19% Similarity=0.223 Sum_probs=151.3
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC----CCCCCCCCcccEEEEEEeCCCCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP----AKMPFTPGMEAVGEVVAVGPGLT 145 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~~lG~e~~G~V~~vG~~v~ 145 (256)
.++++++ .|+++++++.+.|. +++||+|||+++|||++|++++.|.... ..+|.++|||++|+|+++|.+
T Consensus 3 ~~~~~~~---~~~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-- 76 (341)
T cd08237 3 NQVYRLV---RPKFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-- 76 (341)
T ss_pred ccceEEe---ccceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence 4678887 45569999999995 9999999999999999999999987532 347999999999999998764
Q ss_pred ccCCCCEEEEeCC-----------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 146 GRTVGDIIAYAGG-----------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 146 ~~~~Gd~V~~~~~-----------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
.|++||||++.+. .+|+|+||+++|.+.++++|+++++++|+ +...+.++|+++..
T Consensus 77 ~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~~ 155 (341)
T cd08237 77 TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAISR 155 (341)
T ss_pred ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHHH
Confidence 7999999987431 24899999999999999999999999877 44577888888754
Q ss_pred H--cCCCCCCEEEEecCCChHHHHHHHHHHH-cC-CeEEEEeCChhhHHHHHhCCCC
Q 036416 203 C--FKVEPGHTVLIQAAAGGVGSLLCQWANA-LG-ATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~--~~~~~g~~VlI~ga~g~vG~~ai~la~~-~g-a~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
. +.+++|++|+|.| +|++|++++|+|+. .| ++|++++.+++|+++++++|++
T Consensus 156 ~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~ 211 (341)
T cd08237 156 FEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET 211 (341)
T ss_pred HhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence 3 3578999999999 59999999999986 55 5899999999999999887764
No 26
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=1.8e-31 Score=239.10 Aligned_cols=185 Identities=25% Similarity=0.325 Sum_probs=163.7
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
.++++++++++.+ +++++++.|+|+++||+||+.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++++
T Consensus 9 ~~~~~~~~~~~~~--~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~ 86 (357)
T PLN02514 9 KTTGWAARDPSGH--LSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFT 86 (357)
T ss_pred eEEEEEEecCCCC--ceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCccccc
Confidence 3899999987754 88889999999999999999999999999999988765445789999999999999999999999
Q ss_pred CCCEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHH
Q 036416 149 VGDIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGM 194 (256)
Q Consensus 149 ~Gd~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ 194 (256)
+||+|++.. ..+|+|+||+.+|...++++|+++++++++.+++.+.
T Consensus 87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ 166 (357)
T PLN02514 87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGV 166 (357)
T ss_pred CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHH
Confidence 999997421 1258999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH-HhCCCCC
Q 036416 195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA-KDDGCHH 256 (256)
Q Consensus 195 ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~-~~~Ga~~ 256 (256)
|||+++......++|++|+|+| +|++|++++|+|+.+|++|++++.+++++..+ +++|+++
T Consensus 167 ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~ 228 (357)
T PLN02514 167 TVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADD 228 (357)
T ss_pred HHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcE
Confidence 9999987766678999999997 69999999999999999999999887776554 6799863
No 27
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=100.00 E-value=1.7e-31 Score=234.86 Aligned_cols=184 Identities=34% Similarity=0.515 Sum_probs=167.1
Q ss_pred eEEEEEcccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC-CCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 70 VKAIRVYEHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 70 ~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
||++++.+++.+ +.+++.++|.|.+.++||+|||.++++|+.|++.+.|.++ ....|.++|||++|+|+++|++++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999877665 4588999999999999999999999999999999888764 23468899999999999999999999
Q ss_pred CCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416 148 TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ 227 (256)
Q Consensus 148 ~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~ 227 (256)
++||+|+++.. .|+|++|+.++...++++|+++++++++.+++.+.++|+++.. +++++|++|||+|++|++|++++|
T Consensus 81 ~~Gd~V~~~~~-~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~ 158 (324)
T cd08292 81 QVGQRVAVAPV-HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAM 158 (324)
T ss_pred CCCCEEEeccC-CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHH
Confidence 99999998762 3899999999999999999999999999999999999998854 789999999999999999999999
Q ss_pred HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 228 WANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|+.+|+++++++.++++.++++++|++
T Consensus 159 ~a~~~G~~v~~~~~~~~~~~~~~~~g~~ 186 (324)
T cd08292 159 LAAARGINVINLVRRDAGVAELRALGIG 186 (324)
T ss_pred HHHHCCCeEEEEecCHHHHHHHHhcCCC
Confidence 9999999999999999999998888875
No 28
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=1.7e-31 Score=238.95 Aligned_cols=180 Identities=24% Similarity=0.264 Sum_probs=149.0
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
||++++... .++ ++++++|.|+|+++||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++ +.
T Consensus 1 mka~~~~~~-~~~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~ 77 (355)
T cd08230 1 MKAIAVKPG-KPG-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SG 77 (355)
T ss_pred CceeEecCC-CCC-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CC
Confidence 688888743 333 899999999999999999999999999999999987532 235789999999999999999 99
Q ss_pred cCCCCEEEEeCC-----------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416 147 RTVGDIIAYAGG-----------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ 197 (256)
Q Consensus 147 ~~~Gd~V~~~~~-----------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~ 197 (256)
|++||||++... .+|+|+||+++|.+.++++|++++ ++ +++..+..+++
T Consensus 78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~ 155 (355)
T cd08230 78 LSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DV-GVLLEPLSVVE 155 (355)
T ss_pred CCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cc-eeecchHHHHH
Confidence 999999986421 248899999999999999999999 43 33444444444
Q ss_pred HHHHH------HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 198 FLLRR------CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 198 ~~l~~------~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.++.. ..++++|++|+|+| +|++|++++|+|+.+|++|+++++ +++|+++++++|++
T Consensus 156 ~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 156 KAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred HHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 33322 22367899999999 599999999999999999999987 68899999999986
No 29
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=100.00 E-value=3.2e-31 Score=233.91 Aligned_cols=187 Identities=44% Similarity=0.769 Sum_probs=174.1
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
+||++++++++.++.+++++++.|.|+++||+||+.++++|++|++...|.++....|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 59999999999999999999999999999999999999999999999888776555688999999999999999999999
Q ss_pred CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416 149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228 (256)
Q Consensus 149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l 228 (256)
+||+|++.....|+|++|+.++.+.++++|+++++++++.+++.+.+||+++...+++++|++|+|+|++|++|++++++
T Consensus 81 ~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~l 160 (327)
T PRK10754 81 VGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW 160 (327)
T ss_pred CCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence 99999876544589999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 229 ANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|+.+|++|++++.+++++++++++|++
T Consensus 161 ak~~G~~v~~~~~~~~~~~~~~~~g~~ 187 (327)
T PRK10754 161 AKALGAKLIGTVGSAQKAQRAKKAGAW 187 (327)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHCCCC
Confidence 999999999999999999999999975
No 30
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.98 E-value=1e-30 Score=235.56 Aligned_cols=184 Identities=26% Similarity=0.261 Sum_probs=166.3
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
+||++++...+. .+++++.|.|.+.++||+||+.++++|++|++.+.|.++ ..+|.++|||++|+|+++|++++.++
T Consensus 7 ~~~a~~~~~~~~--~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~ 83 (373)
T cd08299 7 KCKAAVLWEPKK--PFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVK 83 (373)
T ss_pred eeEEEEEecCCC--CcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCC
Confidence 489998886554 488899999999999999999999999999999988763 34688999999999999999999999
Q ss_pred CCCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCC
Q 036416 149 VGDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSI 181 (256)
Q Consensus 149 ~Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~ 181 (256)
+||+|++... ..|+|+||++++.+.++++|+++
T Consensus 84 ~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l 163 (373)
T cd08299 84 PGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAA 163 (373)
T ss_pred CCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCC
Confidence 9999987520 14899999999999999999999
Q ss_pred CHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 182 DPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
++++++.+++++.+||+++...+++++|++|+|+| +|++|++++++|+.+|+ +|++++++++|+++++++|+++
T Consensus 164 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~ 238 (373)
T cd08299 164 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE 238 (373)
T ss_pred ChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence 99999999999999999887778999999999997 69999999999999999 7999999999999999999863
No 31
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.97 E-value=2.6e-30 Score=231.49 Aligned_cols=182 Identities=31% Similarity=0.389 Sum_probs=164.4
Q ss_pred EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc----
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG---- 146 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~---- 146 (256)
|++++.+++ +.+++++.+.|.|+++||+|||.++++|++|++...|.++...+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~~~--~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~ 79 (361)
T cd08231 2 RAAVLTGPG--KPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAG 79 (361)
T ss_pred eEEEEcCCC--CCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccC
Confidence 788898766 35899999999999999999999999999999999887653457889999999999999999986
Q ss_pred --cCCCCEEEEeCC---------------------------------CCcceeeEEEecCC-CeEECCCCCCHHHHhhhc
Q 036416 147 --RTVGDIIAYAGG---------------------------------AMGSYAEEQILPAN-KVVPVPSSIDPVIAASIM 190 (256)
Q Consensus 147 --~~~Gd~V~~~~~---------------------------------~~G~~a~~~~v~~~-~~~~ip~~~~~~~aa~l~ 190 (256)
+++||+|++... ..|+|++|+.++.+ .++++|+++++++++.++
T Consensus 80 ~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~ 159 (361)
T cd08231 80 EPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPAN 159 (361)
T ss_pred CccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHhc
Confidence 999999988621 24899999999996 799999999999999888
Q ss_pred hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 191 ~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++.|||+++......++|++|||+| +|++|++++|+|+.+|+ +|+++++++++.++++++|++
T Consensus 160 ~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~ 224 (361)
T cd08231 160 CALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD 224 (361)
T ss_pred CHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCC
Confidence 99999999998876677999999998 69999999999999999 999999999999999999986
No 32
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.97 E-value=1.5e-30 Score=231.37 Aligned_cols=174 Identities=22% Similarity=0.263 Sum_probs=148.5
Q ss_pred CCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHh---CCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEE
Q 036416 80 DPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRK---GVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAY 155 (256)
Q Consensus 80 ~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~---g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~ 155 (256)
.++.+++++.+.|+| ++|||||||.++|||+.|.+... +......+|.++|||++|+|+++|+++++|++||+|++
T Consensus 19 ~~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 98 (345)
T cd08293 19 VAENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS 98 (345)
T ss_pred CccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence 356789999999987 49999999999999999964332 21111236789999999999999999999999999987
Q ss_pred eCCCCcceeeEEEecCCCeEECCCCCCHHH----HhhhchhHHHHHHHHHHHcCCCCC--CEEEEecCCChHHHHHHHHH
Q 036416 156 AGGAMGSYAEEQILPANKVVPVPSSIDPVI----AASIMLKGMTAQFLLRRCFKVEPG--HTVLIQAAAGGVGSLLCQWA 229 (256)
Q Consensus 156 ~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~ga~g~vG~~ai~la 229 (256)
+. ++|+||++++.+.++++|+++++.+ +++++.++.|||+++.+.+++++| ++|||+||+|++|++++|+|
T Consensus 99 ~~---~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlA 175 (345)
T cd08293 99 FN---WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIG 175 (345)
T ss_pred cC---CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 64 5799999999999999999854322 456778899999999888888877 99999999999999999999
Q ss_pred HHcCC-eEEEEeCChhhHHHHHh-CCCCC
Q 036416 230 NALGA-TVIGTVSTKEKAAQAKD-DGCHH 256 (256)
Q Consensus 230 ~~~ga-~Vi~~~~~~~~~~~~~~-~Ga~~ 256 (256)
+.+|+ +|++++++++|.+++++ +|+|+
T Consensus 176 k~~G~~~Vi~~~~s~~~~~~~~~~lGa~~ 204 (345)
T cd08293 176 RLLGCSRVVGICGSDEKCQLLKSELGFDA 204 (345)
T ss_pred HHcCCCEEEEEcCCHHHHHHHHHhcCCcE
Confidence 99999 89999999999999876 99874
No 33
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.97 E-value=1.2e-30 Score=232.98 Aligned_cols=179 Identities=25% Similarity=0.341 Sum_probs=156.7
Q ss_pred EEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCC-CCCCCCCCCCCcccEEEEEEeCCCCCccCCCC
Q 036416 73 IRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-YKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGD 151 (256)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd 151 (256)
+++.+++.+ +++++.|.|.|+++||+|||.++++|++|++.+.+. .+...+|.++|||++|+|+++|+++..+ +||
T Consensus 2 ~~~~~~g~~--~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~Gd 78 (349)
T TIGR03201 2 WMMTEPGKP--MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGK 78 (349)
T ss_pred ceEecCCCC--ceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCC
Confidence 345555543 788899999999999999999999999999987443 3334568999999999999999999887 999
Q ss_pred EEEEeC--------------------------CCCcceeeEEEecCCCeEECCC------CCCHHHHhhhchhHHHHHHH
Q 036416 152 IIAYAG--------------------------GAMGSYAEEQILPANKVVPVPS------SIDPVIAASIMLKGMTAQFL 199 (256)
Q Consensus 152 ~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~------~~~~~~aa~l~~~~~ta~~~ 199 (256)
+|++.. ..+|+|+||+.+|.+.++++|+ ++++++++.++..+.++|++
T Consensus 79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a 158 (349)
T TIGR03201 79 AVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQA 158 (349)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHH
Confidence 998621 1258999999999999999999 89999999999999999999
Q ss_pred HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+.. .++++|++|+|+|+ |++|++++|+|+.+|++|++++.+++|+++++++|+++
T Consensus 159 ~~~-~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~ 213 (349)
T TIGR03201 159 AVQ-AGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADL 213 (349)
T ss_pred HHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce
Confidence 864 68999999999997 99999999999999999999999999999999999863
No 34
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.97 E-value=2.8e-30 Score=229.00 Aligned_cols=183 Identities=32% Similarity=0.528 Sum_probs=165.4
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++.+++. .+++++.+.|++.++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|++++++++
T Consensus 1 m~a~~~~~~~~--~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~ 78 (333)
T cd08296 1 YKAVQVTEPGG--PLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKV 78 (333)
T ss_pred CeEEEEccCCC--CceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCC
Confidence 79999997643 4888999999999999999999999999999999887654456889999999999999999999999
Q ss_pred CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
||+|++.. ...|++++|+.++...++++|+++++++++.+++.+.|||+++..
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~ 158 (333)
T cd08296 79 GDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRN 158 (333)
T ss_pred CCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHh
Confidence 99998621 114899999999999999999999999999999999999999866
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
. ++++|++|+|+| +|++|++++++|+.+|++|+++++++++.++++++|+++
T Consensus 159 ~-~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~ 210 (333)
T cd08296 159 S-GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHH 210 (333)
T ss_pred c-CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcE
Confidence 5 899999999999 799999999999999999999999999999999999863
No 35
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.97 E-value=2.1e-30 Score=230.27 Aligned_cols=182 Identities=24% Similarity=0.285 Sum_probs=157.9
Q ss_pred eEEEEEcccCCCCceEEEEeeC----CCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCccc--EEEEEEeCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEI----GEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEA--VGEVVAVGP 142 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~--~G~V~~vG~ 142 (256)
+|++....+. ++.+++++.++ |+|++|||||||++++||+.|++.+.|.... ...|.++|++. .|++..+|+
T Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 8 LKAYVTGFPK-ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EecCCCCCCC-ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 6676654433 56799998887 8899999999999999999999998885432 34678899754 566667889
Q ss_pred CCCccCCCCEEEEeCCCCcceeeEEEecC-CCeEECC-CCCCHH-HHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCC
Q 036416 143 GLTGRTVGDIIAYAGGAMGSYAEEQILPA-NKVVPVP-SSIDPV-IAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG 219 (256)
Q Consensus 143 ~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~-~~~~~ip-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g 219 (256)
+++++++||+|+++ |+|+||+++|. ..++++| ++++++ +++++++++.|||+++.+.+++++|++|||+||+|
T Consensus 87 ~v~~~~vGd~V~~~----g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G 162 (338)
T cd08295 87 GNPDFKVGDLVWGF----TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASG 162 (338)
T ss_pred CCCCCCCCCEEEec----CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCcc
Confidence 99999999999865 68999999999 7999995 678887 78999999999999998888999999999999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh-CCCCC
Q 036416 220 GVGSLLCQWANALGATVIGTVSTKEKAAQAKD-DGCHH 256 (256)
Q Consensus 220 ~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~-~Ga~~ 256 (256)
++|++++|+|+.+|++|+++++++++.+++++ +|+++
T Consensus 163 ~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~ 200 (338)
T cd08295 163 AVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDD 200 (338)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCce
Confidence 99999999999999999999999999999998 99864
No 36
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.97 E-value=1.6e-30 Score=230.60 Aligned_cols=187 Identities=35% Similarity=0.518 Sum_probs=168.4
Q ss_pred eEEEEEcccCCC-CceEEEEeeCCCCCC-CeEEEEEeEEeeChhhhHhHhCCCCCC-C----CCCCCCcccEEEEEEeCC
Q 036416 70 VKAIRVYEHGDP-EVLKWEDVEIGEPGE-GEIRVRNKAIGLNFIDVYYRKGVYKPA-K----MPFTPGMEAVGEVVAVGP 142 (256)
Q Consensus 70 ~~a~~~~~~~~~-~~l~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~-~----~p~~lG~e~~G~V~~vG~ 142 (256)
|||+.+.+++.+ +.+.+++.|.|+|.+ +||+||+.++++|+.|+..+.|..+.. . .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 789999988765 468899999998887 999999999999999999988875432 2 577999999999999999
Q ss_pred CCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHH
Q 036416 143 GLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVG 222 (256)
Q Consensus 143 ~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG 222 (256)
++..+++||+|++.....|+|++|+.++.+.++++|+++++++++.+++.+.|||+++....++++|++|||+|++|++|
T Consensus 81 ~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg 160 (341)
T cd08290 81 GVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVG 160 (341)
T ss_pred CCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHH
Confidence 99999999999987644589999999999999999999999999999999999999998878899999999999899999
Q ss_pred HHHHHHHHHcCCeEEEEeCCh----hhHHHHHhCCCCC
Q 036416 223 SLLCQWANALGATVIGTVSTK----EKAAQAKDDGCHH 256 (256)
Q Consensus 223 ~~ai~la~~~ga~Vi~~~~~~----~~~~~~~~~Ga~~ 256 (256)
++++|+|+.+|++|++++.++ ++.++++++|+++
T Consensus 161 ~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~ 198 (341)
T cd08290 161 QAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADH 198 (341)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCE
Confidence 999999999999999998876 6788889999863
No 37
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.97 E-value=4.6e-30 Score=230.57 Aligned_cols=184 Identities=28% Similarity=0.335 Sum_probs=165.7
Q ss_pred cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
++|||+++.+++.+ +++++.+.|.+.++||+||+.++++|++|++...|.++ ...|.++|||++|+|+++|+++.++
T Consensus 1 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~ 77 (365)
T cd08278 1 MKTTAAVVREPGGP--FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGL 77 (365)
T ss_pred CccEEeeeccCCCc--ceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccC
Confidence 46999999976543 77889999999999999999999999999999988765 3368899999999999999999999
Q ss_pred CCCCEEEEeC------------------------------------------------CCCcceeeEEEecCCCeEECCC
Q 036416 148 TVGDIIAYAG------------------------------------------------GAMGSYAEEQILPANKVVPVPS 179 (256)
Q Consensus 148 ~~Gd~V~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~ip~ 179 (256)
++||+|++.. ...|+|++|+.++...++++|+
T Consensus 78 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 78 KPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 9999998521 0138899999999999999999
Q ss_pred CCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 180 SIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++++++++.+++.+.|||.++...+++++|++|+|+| +|++|++++|+|+.+|+ .+++++.+++|.++++++|++
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~ 233 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGAT 233 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc
Confidence 9999999999999999999988888899999999997 69999999999999999 588998999999999999985
No 38
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=3.2e-30 Score=226.64 Aligned_cols=176 Identities=23% Similarity=0.357 Sum_probs=147.6
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeC-hhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCC
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLN-FIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGL 144 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v 144 (256)
+||++++. .++.+++++.+.|+|+++||+|||.+++|| ++|++.+.|.++. ..+|.++|||++|+|+++|+++
T Consensus 1 ~~ka~~~~---~~~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v 77 (308)
T TIGR01202 1 KTQAIVLS---GPNQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT 77 (308)
T ss_pred CceEEEEe---CCCeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC
Confidence 47899998 455699999999999999999999999995 7999988887643 2479999999999999999998
Q ss_pred CccCCCCEEEEeCC--------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416 145 TGRTVGDIIAYAGG--------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA 216 (256)
Q Consensus 145 ~~~~~Gd~V~~~~~--------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g 216 (256)
++++||||++... ..|+|+||+.+|.+.++++|++++++. +.+. ...|||+++... ..+|++|+|+|
T Consensus 78 -~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~~--~~~~~~vlV~G 152 (308)
T TIGR01202 78 -GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAGA--EVKVLPDLIVG 152 (308)
T ss_pred -CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHhc--ccCCCcEEEEC
Confidence 6999999986421 259999999999999999999999865 4443 468999988652 34689999998
Q ss_pred CCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCC
Q 036416 217 AAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDG 253 (256)
Q Consensus 217 a~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~G 253 (256)
+|++|++++|+|+.+|++ |++++..++|++.+++++
T Consensus 153 -~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~ 189 (308)
T TIGR01202 153 -HGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE 189 (308)
T ss_pred -CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc
Confidence 699999999999999997 566677777887776554
No 39
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=2.9e-30 Score=235.33 Aligned_cols=182 Identities=24% Similarity=0.253 Sum_probs=150.2
Q ss_pred cceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhH-hCCCC----C--CCCCCCCCcccEEEEEEe
Q 036416 68 NMVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYR-KGVYK----P--AKMPFTPGMEAVGEVVAV 140 (256)
Q Consensus 68 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~----~--~~~p~~lG~e~~G~V~~v 140 (256)
|.||++++.+++ .++++++|.|+|+++||+|||.++|||++|++.+ .|... . ..+|.++|||++|+|+++
T Consensus 1 m~~~a~~~~~~~---~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~v 77 (410)
T cd08238 1 MKTKAWRMYGKG---DLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKV 77 (410)
T ss_pred CCcEEEEEEcCC---ceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEe
Confidence 458999998544 5999999999999999999999999999999976 45421 1 136889999999999999
Q ss_pred CCCCC-ccCCCCEEEEeCC---------------CCcceeeEEEecCC----CeEECCCCCCHHHHhhh-chh-HHHHHH
Q 036416 141 GPGLT-GRTVGDIIAYAGG---------------AMGSYAEEQILPAN----KVVPVPSSIDPVIAASI-MLK-GMTAQF 198 (256)
Q Consensus 141 G~~v~-~~~~Gd~V~~~~~---------------~~G~~a~~~~v~~~----~~~~ip~~~~~~~aa~l-~~~-~~ta~~ 198 (256)
|++|+ .+++||||++... .+|+|+||+++|.+ .++++|+++++++++.+ +.. ..+++.
T Consensus 78 G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~ 157 (410)
T cd08238 78 GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYT 157 (410)
T ss_pred CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhh
Confidence 99998 5999999987521 25999999999987 68999999999998754 211 122333
Q ss_pred H--------HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhhHHHHHhC
Q 036416 199 L--------LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA---TVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 199 ~--------l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga---~Vi~~~~~~~~~~~~~~~ 252 (256)
+ +...+++++|++|+|+|++|++|++++|+|+.+|+ +|++++.+++|+++++++
T Consensus 158 a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 158 ANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred hcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3 23456889999999999889999999999999864 799999999999999997
No 40
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.97 E-value=6.9e-30 Score=227.91 Aligned_cols=181 Identities=28% Similarity=0.316 Sum_probs=158.2
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC---C--------CCCCCCCCCcccEEEEE
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---K--------PAKMPFTPGMEAVGEVV 138 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~--------~~~~p~~lG~e~~G~V~ 138 (256)
||++++.++ +.+.+++++.|+|+++||+||+.++++|++|++.+.+.. + ...+|.++|||++|+|+
T Consensus 1 mka~~~~~~---~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~ 77 (351)
T cd08233 1 MKAARYHGR---KDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVV 77 (351)
T ss_pred CceEEEecC---CceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEE
Confidence 789999854 458999999999999999999999999999998765421 1 01368899999999999
Q ss_pred EeCCCCCccCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhch
Q 036416 139 AVGPGLTGRTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIML 191 (256)
Q Consensus 139 ~vG~~v~~~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~ 191 (256)
++|++++++++||+|++.. ..+|+|++|+.++...++++|+++++++++.+ .
T Consensus 78 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~ 156 (351)
T cd08233 78 EVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-E 156 (351)
T ss_pred EeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-c
Confidence 9999999999999998732 11589999999999999999999999998765 6
Q ss_pred hHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 192 KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 192 ~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
.+.|||+++ ..+++++|++|+|+| +|++|++++|+|+.+|+ +|++++.++++.++++++|+|+
T Consensus 157 ~~~ta~~~l-~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~ 220 (351)
T cd08233 157 PLAVAWHAV-RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATI 220 (351)
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence 778999998 667899999999998 59999999999999999 8999999999999999999863
No 41
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.97 E-value=5.9e-30 Score=231.90 Aligned_cols=190 Identities=34% Similarity=0.455 Sum_probs=165.8
Q ss_pred cccceEEEEEc--ccCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC----------CCCCCCCCcc
Q 036416 66 RTNMVKAIRVY--EHGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP----------AKMPFTPGME 132 (256)
Q Consensus 66 ~~~~~~a~~~~--~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----------~~~p~~lG~e 132 (256)
.|.+|+++++. +++.+ ..+++++.+.|.++++||+|++.++++|++|++...|.... ...+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 45679999885 34444 35888999999999999999999999999999887764110 1123588999
Q ss_pred cEEEEEEeCCCCCccCCCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHH
Q 036416 133 AVGEVVAVGPGLTGRTVGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVI 185 (256)
Q Consensus 133 ~~G~V~~vG~~v~~~~~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~ 185 (256)
++|+|+++|++++.+++||+|++... ..|+|++|++++...++++|+++++++
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~ 168 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEE 168 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHH
Confidence 99999999999999999999988642 248999999999999999999999999
Q ss_pred HhhhchhHHHHHHHHHHH--cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 186 AASIMLKGMTAQFLLRRC--FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 186 aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++.+++.+.|||+++... +++++|++|+|+|++|++|++++++|+.+|+++++++.+++|+++++++|++
T Consensus 169 aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~ 240 (393)
T cd08246 169 AAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAE 240 (393)
T ss_pred HhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCC
Confidence 999999999999998655 6789999999999889999999999999999999999999999999999975
No 42
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.97 E-value=1.5e-29 Score=223.14 Aligned_cols=186 Identities=30% Similarity=0.360 Sum_probs=169.7
Q ss_pred ceEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 69 MVKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 69 ~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
||||+++..++.+..+.+++.+.|.+.++||+|||.++++|+.|+....|..+. ...|.++|+|++|+|+++|++++.+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 599999998887777888888888899999999999999999999988876532 3356789999999999999999999
Q ss_pred CCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416 148 TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ 227 (256)
Q Consensus 148 ~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~ 227 (256)
++||+|+++.. +|+|++|++++.+.++++|+++++.+++.+++.+.+||+++...+++++|++|+|+|++|++|+++++
T Consensus 81 ~~Gd~V~~~~~-~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~ 159 (334)
T PTZ00354 81 KEGDRVMALLP-GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQ 159 (334)
T ss_pred CCCCEEEEecC-CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHH
Confidence 99999998743 48999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 228 WANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|+.+|++++.++.++++.++++++|++
T Consensus 160 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~ 187 (334)
T PTZ00354 160 LAEKYGAATIITTSSEEKVDFCKKLAAI 187 (334)
T ss_pred HHHHcCCEEEEEeCCHHHHHHHHHcCCc
Confidence 9999999988899999999999999985
No 43
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=9.1e-30 Score=226.89 Aligned_cols=180 Identities=26% Similarity=0.247 Sum_probs=153.4
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++++++++ .+++++.|.|+| +++||+|||.++++|++|++...+.. ...+|.++|||++|+|+++|+++++++
T Consensus 1 Mka~~~~~~~---~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~ 76 (347)
T PRK10309 1 MKSVVNDTDG---IVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLH 76 (347)
T ss_pred CceEEEeCCC---ceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCC
Confidence 7899998654 488999999998 69999999999999999997543211 123578999999999999999999999
Q ss_pred CCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 149 VGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 149 ~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
+||+|++.. ...|+|+||+.+|.+.++++|+++++++++.+. ...++|+++ .
T Consensus 77 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~-~ 154 (347)
T PRK10309 77 PGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF-H 154 (347)
T ss_pred CCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-H
Confidence 999998753 125899999999999999999999999998663 445577775 4
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
...+++|++|+|+| +|++|++++|+|+.+|++ |++++++++|+++++++|+++
T Consensus 155 ~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~ 208 (347)
T PRK10309 155 LAQGCEGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ 208 (347)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce
Confidence 56889999999998 699999999999999996 788999999999999999863
No 44
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.97 E-value=1.7e-29 Score=222.12 Aligned_cols=185 Identities=29% Similarity=0.372 Sum_probs=164.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||++++.+++++.+++++.|.|.++++||+|++.++++|++|+..+.|.++. ..+|.++|||++|+|+++ +++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 78999998887778999999999999999999999999999999998887543 335789999999999998 567899
Q ss_pred CCCEEEEeC-----CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCC--C-CCCEEEEecCCCh
Q 036416 149 VGDIIAYAG-----GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV--E-PGHTVLIQAAAGG 220 (256)
Q Consensus 149 ~Gd~V~~~~-----~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~--~-~g~~VlI~ga~g~ 220 (256)
+||+|++.. ..+|+|++|+.++.+.++++|+++++++++.+++.+.++|+++....+. . .+++|+|+|++|+
T Consensus 79 ~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~ 158 (325)
T cd05280 79 EGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGG 158 (325)
T ss_pred CCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccH
Confidence 999999863 1258999999999999999999999999999999999999988765433 5 4579999998999
Q ss_pred HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+|++++|+|+.+|++|++++.+++++++++++|+++
T Consensus 159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~ 194 (325)
T cd05280 159 VGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASE 194 (325)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcE
Confidence 999999999999999999999999999999999863
No 45
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.97 E-value=1.3e-29 Score=223.54 Aligned_cols=178 Identities=22% Similarity=0.283 Sum_probs=154.6
Q ss_pred ceEEEEEcc-c-CCC--CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCC
Q 036416 69 MVKAIRVYE-H-GDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGL 144 (256)
Q Consensus 69 ~~~a~~~~~-~-~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v 144 (256)
+|+++++.. + +++ +.+++++.+.|+|++|||+|||.+++||+.|.+...+ + ..+|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~-~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L-NEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C-CCCCcEecceEEEEEec---CC
Confidence 489999998 3 444 7899999999999999999999999999987653221 1 23688999999999995 45
Q ss_pred CccCCCCEEEEeCCCCcceeeEEEecCC---CeEECCCCCC-----HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEec
Q 036416 145 TGRTVGDIIAYAGGAMGSYAEEQILPAN---KVVPVPSSID-----PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQA 216 (256)
Q Consensus 145 ~~~~~Gd~V~~~~~~~G~~a~~~~v~~~---~~~~ip~~~~-----~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~g 216 (256)
+.+++||+|++. ++|++|++++.+ .++++|++++ ...++++++.++|||+++...+++++|++|||+|
T Consensus 76 ~~~~~Gd~V~~~----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~g 151 (329)
T cd08294 76 SKFPVGTIVVAS----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNG 151 (329)
T ss_pred CCCCCCCEEEee----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 679999999875 579999999999 9999999998 2333467889999999998888999999999999
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 217 AAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 217 a~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
|+|++|++++|+|+.+|++|+++++++++.++++++|+++
T Consensus 152 a~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~ 191 (329)
T cd08294 152 AAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDA 191 (329)
T ss_pred CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999999999863
No 46
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.97 E-value=1.4e-29 Score=223.73 Aligned_cols=171 Identities=22% Similarity=0.262 Sum_probs=150.2
Q ss_pred cccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEE
Q 036416 76 YEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAY 155 (256)
Q Consensus 76 ~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~ 155 (256)
+....++.+++.+.+.|+|++|||||||.++++|+.|. .|.++....|.++|.|++|+|+++|+ .+++||+|++
T Consensus 11 ~~~~~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~ 84 (325)
T TIGR02825 11 VGYPTDSDFELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLA 84 (325)
T ss_pred CCCCCCCceEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEE
Confidence 34456778999999999999999999999999999654 44433333578999999999999874 5999999997
Q ss_pred eCCCCcceeeEEEecCCCeEEC----CCCCCHHHH-hhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHH
Q 036416 156 AGGAMGSYAEEQILPANKVVPV----PSSIDPVIA-ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWAN 230 (256)
Q Consensus 156 ~~~~~G~~a~~~~v~~~~~~~i----p~~~~~~~a-a~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~ 230 (256)
+ ++|++|+.++.+.+.++ |++++++++ +++++.+.|||+++...+++++|++|||+|++|++|++++|+|+
T Consensus 85 ~----~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk 160 (325)
T TIGR02825 85 S----PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAK 160 (325)
T ss_pred e----cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 5 46999999999888777 899999997 67899999999999888899999999999999999999999999
Q ss_pred HcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 231 ALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 231 ~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
..|++|+++++++++.++++++|+|+
T Consensus 161 ~~G~~Vi~~~~s~~~~~~~~~lGa~~ 186 (325)
T TIGR02825 161 LKGCKVVGAAGSDEKVAYLKKLGFDV 186 (325)
T ss_pred HcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence 99999999999999999999999863
No 47
>PRK10083 putative oxidoreductase; Provisional
Probab=99.97 E-value=2.1e-29 Score=223.44 Aligned_cols=181 Identities=27% Similarity=0.335 Sum_probs=157.6
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||+++.+ ++.+++++++.|.|+++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~~---~~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 77 (339)
T PRK10083 1 MKSIVIEK---PNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARI 77 (339)
T ss_pred CeEEEEec---CCeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCC
Confidence 68999985 446999999999999999999999999999999998887655457899999999999999999999999
Q ss_pred CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
||+|+... ..+|+|++|+.++...++++|+++++++++ +...+.++|. +...
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~-~~~~ 155 (339)
T PRK10083 78 GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAAN-VTGR 155 (339)
T ss_pred CCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHH-HHHh
Confidence 99998421 124899999999999999999999998876 5566777775 4466
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHH-cCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANA-LGAT-VIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~-~ga~-Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++++|++|+|+| +|++|++++|+|+. +|++ +++++++++|.++++++|+|+
T Consensus 156 ~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~ 209 (339)
T PRK10083 156 TGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW 209 (339)
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence 7899999999999 79999999999996 6995 777888899999999999863
No 48
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=2.3e-29 Score=220.32 Aligned_cols=184 Identities=37% Similarity=0.464 Sum_probs=167.2
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++.+...+.+..+.+.+.+.|.++++||+||+.++++|+.|++...|..+....|.++|||++|+|+++|. ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 6888998777667788888888889999999999999999999999888765545678999999999999995 57999
Q ss_pred CCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416 150 GDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 150 Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ 224 (256)
||+|+++.. ..|+|++|+.++...++++|+++++++++.+++++.+||+++....++++|++|+|+|++|++|++
T Consensus 79 Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~ 158 (320)
T cd08243 79 GQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLA 158 (320)
T ss_pred CCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHH
Confidence 999998752 248999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++|+|+.+|++|++++.++++.++++++|++
T Consensus 159 ~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~ 189 (320)
T cd08243 159 ALKLAKALGATVTATTRSPERAALLKELGAD 189 (320)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc
Confidence 9999999999999999999999999999985
No 49
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=3e-29 Score=223.77 Aligned_cols=182 Identities=24% Similarity=0.228 Sum_probs=162.3
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++.+++ .+.+++.+.|.+.++||+||+.++++|++|++...+.++....|.++|||++|+|+++|++++++++
T Consensus 1 mka~~~~~~~---~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~ 77 (351)
T cd08285 1 MKAFAMLGIG---KVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKP 77 (351)
T ss_pred CceEEEccCC---ccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCC
Confidence 7899999655 3788899999999999999999999999999988876654456899999999999999999999999
Q ss_pred CCEEEEeCC-----------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHHH
Q 036416 150 GDIIAYAGG-----------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQF 198 (256)
Q Consensus 150 Gd~V~~~~~-----------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~~ 198 (256)
||+|++... ..|+|++|+.++.. .++++|+++++++++.++..+.|||+
T Consensus 78 Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~ 157 (351)
T cd08285 78 GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFH 157 (351)
T ss_pred CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHH
Confidence 999997431 25899999999974 89999999999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
++ ..+++++|++|||+| +|++|++++|+|+.+|+ .|++++.+++|.++++++|+++
T Consensus 158 ~~-~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~ 214 (351)
T cd08285 158 GA-ELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATD 214 (351)
T ss_pred HH-HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCce
Confidence 86 557899999999997 69999999999999999 5888989999999999999863
No 50
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.97 E-value=2.3e-29 Score=223.86 Aligned_cols=184 Identities=33% Similarity=0.493 Sum_probs=162.0
Q ss_pred eEEEEEcccCCCCceEEEE-eeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC--------------------CCCCCCC
Q 036416 70 VKAIRVYEHGDPEVLKWED-VEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK--------------------PAKMPFT 128 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~~ 128 (256)
||++.+..++.++.+.+.+ .+.|.+.+++|+|||.++++|++|+++..|.++ ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 6888888777766777764 477788999999999999999999998877543 2346789
Q ss_pred CCcccEEEEEEeCCCCCccCCCCEEEEeC------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhc
Q 036416 129 PGMEAVGEVVAVGPGLTGRTVGDIIAYAG------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIM 190 (256)
Q Consensus 129 lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~ 190 (256)
+|||++|+|+++|++++++++||+|++.. ..+|++++|+.++...++++|+++++++++.++
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~ 160 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP 160 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcc
Confidence 99999999999999999999999998742 124899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 191 ~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+.+.|||+++ ...++++|++|||+|++|++|++++++|+.+|++|++++.++ +++.++++|++
T Consensus 161 ~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~ 223 (350)
T cd08274 161 CSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGAD 223 (350)
T ss_pred cHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCe
Confidence 9999999988 667899999999999889999999999999999999998765 88888999974
No 51
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=226.02 Aligned_cols=181 Identities=31% Similarity=0.347 Sum_probs=147.2
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCC-CCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPF-TPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~-~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|+++++...+.. ..+++.+.|.+.++||+|||.++|||++|++.+.|..+....+. ++|||++|+|+++| .++.++
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~ 77 (350)
T COG1063 1 MKAAVVYVGGGD--VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFK 77 (350)
T ss_pred CceeEEEecCCc--cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCC
Confidence 556666644332 33667776778999999999999999999999999877665666 99999999999999 778899
Q ss_pred CCCEEEEeC------------------C-------------CCcceeeEEEecCCCeEE-CCCCCCHHHHhhhchhHHHH
Q 036416 149 VGDIIAYAG------------------G-------------AMGSYAEEQILPANKVVP-VPSSIDPVIAASIMLKGMTA 196 (256)
Q Consensus 149 ~Gd~V~~~~------------------~-------------~~G~~a~~~~v~~~~~~~-ip~~~~~~~aa~l~~~~~ta 196 (256)
+||||++.+ . .+|+|+||+.+|.+..++ +|+++ ..+++++...+.++
T Consensus 78 ~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~ 156 (350)
T COG1063 78 VGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATA 156 (350)
T ss_pred CCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhh
Confidence 999998642 1 258999999999765554 58887 55556677888999
Q ss_pred HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh-CCCC
Q 036416 197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD-DGCH 255 (256)
Q Consensus 197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~-~Ga~ 255 (256)
+++.......+++++|+|+| +|++|++++++|+..|+ +|++++.+++|++++++ +|++
T Consensus 157 ~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~ 216 (350)
T COG1063 157 YHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD 216 (350)
T ss_pred hhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence 77754555667777999999 69999999999999998 79999999999999998 6654
No 52
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.97 E-value=2.4e-29 Score=223.07 Aligned_cols=184 Identities=36% Similarity=0.560 Sum_probs=164.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
||++++++++. .+.+.+.+.|.+.+++|+|++.++++|++|++...|.++. ..+|.++|+|++|+|+++|+++..
T Consensus 1 ~ka~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~ 78 (340)
T cd05284 1 MKAARLYEYGK--PLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDG 78 (340)
T ss_pred CeeeEeccCCC--CceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCc
Confidence 68999997754 4788888999999999999999999999999998886542 346789999999999999999999
Q ss_pred cCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416 147 RTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL 200 (256)
Q Consensus 147 ~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l 200 (256)
+++||+|++... ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l 158 (340)
T cd05284 79 LKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV 158 (340)
T ss_pred CcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence 999999997641 248999999999999999999999999999999999999998
Q ss_pred HHH-cCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHhCCCCC
Q 036416 201 RRC-FKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 201 ~~~-~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
... ..+.+|++|||+| +|++|++++|+|+.+| ++|+++++++++.+.++++|+++
T Consensus 159 ~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~ 215 (340)
T cd05284 159 KKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADH 215 (340)
T ss_pred HHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcE
Confidence 776 4688999999999 5779999999999999 79999999999999999999853
No 53
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.97 E-value=3.5e-29 Score=220.95 Aligned_cols=182 Identities=40% Similarity=0.621 Sum_probs=167.4
Q ss_pred eEEEEEcccCC--CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGD--PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~--~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
||++++..++. ++.+++++.+.|.+.++||+||+.++++|+.|++...|.++. ..+|.++|+|++|+|+.+|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~ 81 (329)
T cd08250 2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTD 81 (329)
T ss_pred ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCC
Confidence 89999999887 788999999999999999999999999999999988887643 457889999999999999999999
Q ss_pred cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHH
Q 036416 147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLC 226 (256)
Q Consensus 147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai 226 (256)
+++||+|+++.. |+|++|+.++.+.++++|+. +.+++.++..+.|||+++....++++|++|+|+|++|++|++++
T Consensus 82 ~~~Gd~V~~~~~--g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~ 157 (329)
T cd08250 82 FKVGDAVATMSF--GAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAV 157 (329)
T ss_pred CCCCCEEEEecC--cceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHH
Confidence 999999998765 89999999999999999997 35677889999999999988888999999999999999999999
Q ss_pred HHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 227 QWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 227 ~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++|+..|++|+++++++++.++++++|++
T Consensus 158 ~~a~~~g~~v~~~~~~~~~~~~~~~~g~~ 186 (329)
T cd08250 158 QLAKLAGCHVIGTCSSDEKAEFLKSLGCD 186 (329)
T ss_pred HHHHHcCCeEEEEeCcHHHHHHHHHcCCc
Confidence 99999999999999999999999999974
No 54
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.97 E-value=4.6e-29 Score=217.62 Aligned_cols=179 Identities=29% Similarity=0.383 Sum_probs=162.2
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++++.+ |..+++++.+.|.++++||+||+.++++|+.|++...+. ..|.++|||++|+|+++|+++..+++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~ 75 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAV 75 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence 6889998765 778888899999999999999999999999999876522 23578999999999999999999999
Q ss_pred CCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHH
Q 036416 150 GDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWA 229 (256)
Q Consensus 150 Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la 229 (256)
||+|+++.. .|+|++|+.++.+.++++|+++++++++.+++.+.|||+++...... +|++|+|+|+.|++|.+++++|
T Consensus 76 Gd~V~~~~~-~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a 153 (305)
T cd08270 76 GARVVGLGA-MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLA 153 (305)
T ss_pred CCEEEEecC-CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHH
Confidence 999998752 48999999999999999999999999999999999999998776555 5999999998899999999999
Q ss_pred HHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 230 NALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 230 ~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+..|++|+.+++++++.+.++++|++
T Consensus 154 ~~~g~~v~~~~~~~~~~~~~~~~g~~ 179 (305)
T cd08270 154 ALAGAHVVAVVGSPARAEGLRELGAA 179 (305)
T ss_pred HHcCCEEEEEeCCHHHHHHHHHcCCc
Confidence 99999999999999999999999975
No 55
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.97 E-value=4.8e-29 Score=219.13 Aligned_cols=185 Identities=39% Similarity=0.586 Sum_probs=165.8
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
|||+.+++++.++.+.+.+.+.|.+.+++|+|++.++++|+.|++...|..+. ...|.++|||++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 68999988777778888888888889999999999999999999988876432 345788999999999999999999
Q ss_pred cCCCCEEEEeCC-CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHH
Q 036416 147 RTVGDIIAYAGG-AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLL 225 (256)
Q Consensus 147 ~~~Gd~V~~~~~-~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~a 225 (256)
+++||+|+++.. ..|+|++|+.++...++++|+++++++++.+++.+.||| ++...+++++|++|+|+|++|++|.++
T Consensus 81 ~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~ 159 (324)
T cd08244 81 AWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLL 159 (324)
T ss_pred CCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHH
Confidence 999999998751 138999999999999999999999999999999999995 555667899999999999999999999
Q ss_pred HHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 226 CQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 226 i~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++|+.+|++|+++++++++.++++++|++
T Consensus 160 ~~la~~~g~~v~~~~~~~~~~~~~~~~g~~ 189 (324)
T cd08244 160 VQLAKAAGATVVGAAGGPAKTALVRALGAD 189 (324)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999975
No 56
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.97 E-value=2.9e-29 Score=222.32 Aligned_cols=181 Identities=31% Similarity=0.414 Sum_probs=161.9
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++++++.+.. +++.|.|.+.++||+||+.++++|++|++.+.|..+.. .|.++|||++|+|+++|++++.+++
T Consensus 1 mka~~~~~~~~~~~--~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~~-~~~~~g~e~~G~V~~~G~~v~~~~~ 77 (338)
T PRK09422 1 MKAAVVNKDHTGDV--VVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDK-TGRILGHEGIGIVKEVGPGVTSLKV 77 (338)
T ss_pred CeEEEecCCCCCce--EEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCCC-CCccCCcccceEEEEECCCCccCCC
Confidence 78999997665422 78889999999999999999999999999988876432 4678999999999999999999999
Q ss_pred CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
||+|++.+ ..+|++++|+.++...++++|+++++.+++.+++.+.|||+++ .
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~ 156 (338)
T PRK09422 78 GDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-K 156 (338)
T ss_pred CCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-H
Confidence 99998621 1158999999999999999999999999999999999999998 6
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.+++++|++|||+| +|++|++++++|+. .|++|++++++++++++++++|++
T Consensus 157 ~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~ 209 (338)
T PRK09422 157 VSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGAD 209 (338)
T ss_pred hcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCc
Confidence 67899999999999 69999999999998 499999999999999999999985
No 57
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.97 E-value=6.8e-29 Score=221.75 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=153.4
Q ss_pred ceEEEEEccc----CCCCceEEEEe---eCC-CCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCc--ccEEEEE
Q 036416 69 MVKAIRVYEH----GDPEVLKWEDV---EIG-EPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGM--EAVGEVV 138 (256)
Q Consensus 69 ~~~a~~~~~~----~~~~~l~~~~~---~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~--e~~G~V~ 138 (256)
+.|.+.+.+. -.++++++++. +.| ++++||||||+.++++|+.|+....+.......|.++|+ |++|+|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~v~ 87 (348)
T PLN03154 8 ENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGVSK 87 (348)
T ss_pred cceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEEEE
Confidence 3577776432 23466887774 555 358999999999999999998754432322235889998 8899999
Q ss_pred EeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCC--eEE--CCCCCCHH-HHhhhchhHHHHHHHHHHHcCCCCCCEEE
Q 036416 139 AVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANK--VVP--VPSSIDPV-IAASIMLKGMTAQFLLRRCFKVEPGHTVL 213 (256)
Q Consensus 139 ~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~--~~~--ip~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~Vl 213 (256)
.+|++++++++||+|+++ |+|+||+.++... +++ +|++++++ +++++++++.|||+++...+++++|++||
T Consensus 88 ~vg~~v~~~~~Gd~V~~~----~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~Vl 163 (348)
T PLN03154 88 VVDSDDPNFKPGDLISGI----TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVF 163 (348)
T ss_pred EEecCCCCCCCCCEEEec----CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999865 6799999999753 544 48999986 68889999999999998888999999999
Q ss_pred EecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCCCC
Q 036416 214 IQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGCHH 256 (256)
Q Consensus 214 I~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga~~ 256 (256)
|+|++|++|++++|+|+.+|++|++++.+++|+++++ ++|+|+
T Consensus 164 V~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~ 207 (348)
T PLN03154 164 VSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDE 207 (348)
T ss_pred EecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCE
Confidence 9998899999999999999999999999999999997 799863
No 58
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.97 E-value=4.7e-29 Score=224.04 Aligned_cols=183 Identities=27% Similarity=0.365 Sum_probs=163.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
+||+++.+++.+ +++++.+.|.+++++|+|++.++++|+.|++.+.|.++. .+|.++|||++|+|+++|++++.+++
T Consensus 1 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~-~~~~i~g~e~~G~V~~vG~~v~~~~~ 77 (365)
T cd05279 1 CKAAVLWEKGKP--LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT-PLPVILGHEGAGIVESIGPGVTTLKP 77 (365)
T ss_pred CceeEEecCCCC--cEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC-CCCcccccceeEEEEEeCCCcccCCC
Confidence 367888865544 888999999999999999999999999999999887653 36789999999999999999999999
Q ss_pred CCEEEEeCC-----------------------------------------------CCcceeeEEEecCCCeEECCCCCC
Q 036416 150 GDIIAYAGG-----------------------------------------------AMGSYAEEQILPANKVVPVPSSID 182 (256)
Q Consensus 150 Gd~V~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~ip~~~~ 182 (256)
||+|++... ..|+|++|+.++.+.++++|++++
T Consensus 78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~ 157 (365)
T cd05279 78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP 157 (365)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCC
Confidence 999987621 136899999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416 183 PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++++.+.+.+.+||+++...+++++|++|||+| +|++|++++++|+.+|++ |++++++++|.++++++|+++
T Consensus 158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 231 (365)
T cd05279 158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATE 231 (365)
T ss_pred HHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCe
Confidence 9999999999999999988888999999999997 699999999999999996 777777899999999999863
No 59
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.97 E-value=6.7e-29 Score=218.75 Aligned_cols=183 Identities=34% Similarity=0.441 Sum_probs=166.3
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|+++++..+ ++.+.+++.|.|.+.++||+|++.++++|+.|++...|.++....|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~ 78 (332)
T cd08259 1 MKAAILHKP--NKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKP 78 (332)
T ss_pred CeEEEEecC--CCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCC
Confidence 688998753 345888999999999999999999999999999999887665556889999999999999999999999
Q ss_pred CCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 150 GDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
||+|+++.. ..|+|++|++++...++++|+++++++++.+++.+.+||+++..
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~- 157 (332)
T cd08259 79 GDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR- 157 (332)
T ss_pred CCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-
Confidence 999998751 14899999999999999999999999999999999999999977
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++.+|++++|+|++|++|++++++++..|++|+++++++++.+.++++|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCc
Confidence 7899999999999999999999999999999999999998899988888864
No 60
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.97 E-value=7.2e-29 Score=218.32 Aligned_cols=184 Identities=25% Similarity=0.353 Sum_probs=162.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||+++..+++++.+++++.|.|.|+++||+|++.++++|++|+....|.++. ..+|.++|||++|+|++ +++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999998888778999999999999999999999999999999988876532 33578899999999999 7778899
Q ss_pred CCCEEEEeC-----CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH--HcCCC-CCCEEEEecCCCh
Q 036416 149 VGDIIAYAG-----GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR--CFKVE-PGHTVLIQAAAGG 220 (256)
Q Consensus 149 ~Gd~V~~~~-----~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~-~g~~VlI~ga~g~ 220 (256)
+||+|+++. ...|+|++|++++.+.++++|+++++++++.+++.+++++.++.. ..... +|++|+|+|++|+
T Consensus 79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~ 158 (324)
T cd08288 79 PGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGG 158 (324)
T ss_pred CCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcH
Confidence 999999864 125899999999999999999999999999999999999877641 13444 6789999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|.+++|+|+.+|++|++++.+++|.++++++|++
T Consensus 159 vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~ 193 (324)
T cd08288 159 VGSVAVALLARLGYEVVASTGRPEEADYLRSLGAS 193 (324)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999985
No 61
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.97 E-value=6.4e-29 Score=219.73 Aligned_cols=186 Identities=34% Similarity=0.349 Sum_probs=168.7
Q ss_pred eEEEEEcccCCCC---ceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPE---VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~---~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
||++++++++.+. .+.+++.+.|++.+++|+|++.++++|+.|++.+.+..+....|.++|||++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 6899999887765 4777888889999999999999999999999988876654446778999999999999999999
Q ss_pred cCCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC-----CCEEEEecCCC
Q 036416 147 RTVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP-----GHTVLIQAAAG 219 (256)
Q Consensus 147 ~~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~ga~g 219 (256)
+++||+|++... ..|+|++|+.++...++++|+++++++++.+++.+.|||+++.+.+.+.+ |++|+|+|++|
T Consensus 81 ~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g 160 (336)
T cd08252 81 FKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAG 160 (336)
T ss_pred CCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCc
Confidence 999999998752 45899999999999999999999999999999999999999888788887 99999999899
Q ss_pred hHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHhCCCC
Q 036416 220 GVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 220 ~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++|++++++|+.+| ++|++++.++++.++++++|++
T Consensus 161 ~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~ 197 (336)
T cd08252 161 GVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGAD 197 (336)
T ss_pred hHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCc
Confidence 99999999999999 8999999999999999999975
No 62
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.97 E-value=6.1e-29 Score=225.77 Aligned_cols=190 Identities=34% Similarity=0.445 Sum_probs=165.8
Q ss_pred cccceEEEEEcc--cCCC-CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC----------CCCCC-CCCCc
Q 036416 66 RTNMVKAIRVYE--HGDP-EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK----------PAKMP-FTPGM 131 (256)
Q Consensus 66 ~~~~~~a~~~~~--~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p-~~lG~ 131 (256)
.+.+|||+++.. +++| +.+++.+.+.|.|+++||+|++.++++|+.|++...+... ....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 356699999965 6665 6799999999999999999999999999999887665421 01123 37999
Q ss_pred ccEEEEEEeCCCCCccCCCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHH
Q 036416 132 EAVGEVVAVGPGLTGRTVGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPV 184 (256)
Q Consensus 132 e~~G~V~~vG~~v~~~~~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~ 184 (256)
|++|+|+++|++++.+++||+|++... ..|+|++|+.++.+.++++|++++++
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~ 163 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWE 163 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHH
Confidence 999999999999999999999988641 24899999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHH--HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 185 IAASIMLKGMTAQFLLRR--CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 185 ~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++.+++.+.+||+++.. .+++++|++|+|+|++|++|++++++|+.+|+++++++.++++.++++++|++
T Consensus 164 ~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~ 236 (398)
T TIGR01751 164 EAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAE 236 (398)
T ss_pred HHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCC
Confidence 999999999999999865 46789999999999889999999999999999999999999999999999975
No 63
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=1.3e-28 Score=217.41 Aligned_cols=184 Identities=30% Similarity=0.439 Sum_probs=166.4
Q ss_pred eEEEEEcccCCC--CceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 70 VKAIRVYEHGDP--EVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 70 ~~a~~~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
||++++.+.+.+ +.+++++.+.|.++++||+||+.++++|++|++...|..+....|.++|||++|+|+++|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 688999877742 468888888888999999999999999999999998877655578899999999999999999999
Q ss_pred CCCCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416 148 TVGDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL 200 (256)
Q Consensus 148 ~~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l 200 (256)
++||+|++... ..|+|++|+.++.+.++++|+++++.+++.+++.+.|||+++
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~ 160 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL 160 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH
Confidence 99999986210 248999999999999999999999999999999999999998
Q ss_pred HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
..+++++|++|+|+| +|++|++++++|+..|++|++++.++++.++++++|++
T Consensus 161 -~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~ 213 (329)
T cd08298 161 -KLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVFAFTRSGEHQELARELGAD 213 (329)
T ss_pred -HhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCc
Confidence 778999999999997 79999999999999999999999999999999999985
No 64
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.97 E-value=8.9e-29 Score=217.92 Aligned_cols=184 Identities=25% Similarity=0.333 Sum_probs=159.9
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC-CCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY-KPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||+++..++++..+.+++.+.|.|.++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.| +..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999988877788899999999999999999999999999987664321 122358899999999999954 57799
Q ss_pred CCCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC---CCCCCEEEEecCCCh
Q 036416 149 VGDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK---VEPGHTVLIQAAAGG 220 (256)
Q Consensus 149 ~Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~ga~g~ 220 (256)
+||+|++... ..|+|++|+.++.+.++++|+++++++++.+++.+.|||.++....+ ...|++|+|+|++|+
T Consensus 79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~ 158 (326)
T cd08289 79 PGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGG 158 (326)
T ss_pred CCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCch
Confidence 9999998741 25899999999999999999999999999999999999988764332 345789999998899
Q ss_pred HHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 221 VGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 221 vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|++++|+|+.+|++|++++++++++++++++|++
T Consensus 159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~ 193 (326)
T cd08289 159 VGSLAVSILAKLGYEVVASTGKADAADYLKKLGAK 193 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999975
No 65
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=1.4e-28 Score=218.37 Aligned_cols=184 Identities=36% Similarity=0.519 Sum_probs=166.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||+++.+++ +..+++.+.+.|.+.++|++||+.++++|++|++++.|.++. ...|.++|+|++|+|+++|++++.++
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~ 79 (341)
T cd08297 1 MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLK 79 (341)
T ss_pred CceEEeeccC-CCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCC
Confidence 7899998777 567999999999999999999999999999999988887643 23467899999999999999999999
Q ss_pred CCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416 149 VGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR 201 (256)
Q Consensus 149 ~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~ 201 (256)
+||+|++.. ...|++++|+.++.+.++++|+++++++++.+++.+.|||+++.
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~ 159 (341)
T cd08297 80 VGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALK 159 (341)
T ss_pred CCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHH
Confidence 999998752 02489999999999999999999999999999999999999987
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
. .++++|++|||+|+.+++|++++++|+.+|++|++++.++++.++++++|++
T Consensus 160 ~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~ 212 (341)
T cd08297 160 K-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGAD 212 (341)
T ss_pred h-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCc
Confidence 6 4899999999999888899999999999999999999999999999999975
No 66
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.97 E-value=8.7e-29 Score=218.97 Aligned_cols=180 Identities=31% Similarity=0.367 Sum_probs=163.9
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++.+++. .+++++.|.|.+.++|++|++.++++|+.|++...|.++...+|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~~~--~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 78 (334)
T PRK13771 1 MKAVILPGFKQ--GYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKP 78 (334)
T ss_pred CeeEEEcCCCC--CcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCC
Confidence 78999987765 3888999999999999999999999999999988887665556889999999999999999999999
Q ss_pred CCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 150 GDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
||+|++... ..|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++...
T Consensus 79 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~ 158 (334)
T PRK13771 79 GDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA 158 (334)
T ss_pred CCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc
Confidence 999998641 148999999999999999999999999999999999999998776
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~ 252 (256)
++++|++|+|+|++|++|++++++|+.+|++|++++.+++++++++++
T Consensus 159 -~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~ 206 (334)
T PRK13771 159 -GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY 206 (334)
T ss_pred -CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 899999999999889999999999999999999999999998888776
No 67
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.97 E-value=1.3e-28 Score=218.94 Aligned_cols=182 Identities=31% Similarity=0.381 Sum_probs=166.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||+++.+++.+ +.+++.+.|.+.+++|+||+.++++|+.|+....|..+...+|.++|+|++|+|+++|+++..+++
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~ 78 (345)
T cd08260 1 MRAAVYEEFGEP--LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRV 78 (345)
T ss_pred CeeEEEecCCCC--cEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCC
Confidence 799999877755 888899999999999999999999999999999887665556889999999999999999999999
Q ss_pred CCEEEE---------------------------eCCCCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416 150 GDIIAY---------------------------AGGAMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQFLL 200 (256)
Q Consensus 150 Gd~V~~---------------------------~~~~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~~~l 200 (256)
||+|++ +. .+|+|++|+.++.. .++++|+++++++++.+++.+.|||+++
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l 157 (345)
T cd08260 79 GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFT-HPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRAL 157 (345)
T ss_pred CCEEEECCCCCCCCCccccCcCcccCCCCcccccC-CCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHH
Confidence 999987 21 25899999999975 8999999999999999999999999998
Q ss_pred HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
...+++.+|++|+|+| +|++|++++++|+.+|++|++++.++++.++++++|++
T Consensus 158 ~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~ 211 (345)
T cd08260 158 VHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAV 211 (345)
T ss_pred HHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCC
Confidence 8778899999999999 79999999999999999999999999999999999986
No 68
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.97 E-value=1.3e-28 Score=222.80 Aligned_cols=179 Identities=24% Similarity=0.191 Sum_probs=162.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||+++. .++.+++.+++.|.| ++++|+||+.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++++
T Consensus 1 m~a~~~~---~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 77 (386)
T cd08283 1 MKALVWH---GKGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLK 77 (386)
T ss_pred CeeEEEe---cCCCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCC
Confidence 7899988 346689999999988 599999999999999999999999876655789999999999999999999999
Q ss_pred CCCEEEEeCC----------------------------------------------CCcceeeEEEecCC--CeEECCCC
Q 036416 149 VGDIIAYAGG----------------------------------------------AMGSYAEEQILPAN--KVVPVPSS 180 (256)
Q Consensus 149 ~Gd~V~~~~~----------------------------------------------~~G~~a~~~~v~~~--~~~~ip~~ 180 (256)
+||+|++... ..|+|++|++++.+ .++++|++
T Consensus 78 ~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~ 157 (386)
T cd08283 78 VGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDD 157 (386)
T ss_pred CCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCC
Confidence 9999987531 14899999999988 89999999
Q ss_pred CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCC
Q 036416 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDG 253 (256)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~G 253 (256)
+++++++.++..+.|||+++ ..+++++|++|+|+| +|++|++++++|+.+|+ +|++++.++++.++++++|
T Consensus 158 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~ 229 (386)
T cd08283 158 LSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWG-CGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL 229 (386)
T ss_pred CCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC
Confidence 99999999999999999998 678999999999997 69999999999999998 5999999999999999883
No 69
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.97 E-value=1.9e-28 Score=215.76 Aligned_cols=183 Identities=26% Similarity=0.370 Sum_probs=162.7
Q ss_pred EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||+++...+.|+.+++++.|.|.+.++||+||+.++++|+.|++.+.|.++. ...|.++|||++|+|++ .++..+++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 5788888888888999999999999999999999999999999998887532 34588999999999998 56778999
Q ss_pred CCEEEEeCC-----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHc--CCCCCC-EEEEecCCChH
Q 036416 150 GDIIAYAGG-----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF--KVEPGH-TVLIQAAAGGV 221 (256)
Q Consensus 150 Gd~V~~~~~-----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~--~~~~g~-~VlI~ga~g~v 221 (256)
||+|++... ..|++++|+.+|.+.++++|+++++++++.+++.+.+||.++.... .+.+|+ +|+|+|++|++
T Consensus 79 Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~v 158 (323)
T TIGR02823 79 GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGV 158 (323)
T ss_pred CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHH
Confidence 999998741 2489999999999999999999999999999999999998875443 388998 99999988999
Q ss_pred HHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 222 GSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 222 G~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|.+++++|+.+|+++++++.+++++++++++|++
T Consensus 159 g~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~ 192 (323)
T TIGR02823 159 GSLAVAILSKLGYEVVASTGKAEEEDYLKELGAS 192 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Confidence 9999999999999999999988999999999985
No 70
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.97 E-value=1e-28 Score=219.55 Aligned_cols=181 Identities=27% Similarity=0.255 Sum_probs=162.3
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++.+.+++ .+.+.+.|.|.| .++||+||+.++++|++|++.+.|.++...+|.++|+|++|+|+++|+++++++
T Consensus 1 ~ka~~~~~~~---~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 77 (347)
T cd05278 1 MKALVYLGPG---KIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLK 77 (347)
T ss_pred CceEEEecCC---ceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccC
Confidence 6888988544 488889999999 999999999999999999999988876666789999999999999999999999
Q ss_pred CCCEEEEeC-----------------------------CCCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHH
Q 036416 149 VGDIIAYAG-----------------------------GAMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQ 197 (256)
Q Consensus 149 ~Gd~V~~~~-----------------------------~~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~ 197 (256)
+||+|++.. ...|+|++|++++.+ .++++|+++++++++.+++.+.|||
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~ 157 (347)
T cd05278 78 PGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGF 157 (347)
T ss_pred CCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhhee
Confidence 999998721 124899999999987 8999999999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++ ...++++|++|||.| +|++|.+++|+|+.+|+ +|++++.++++.++++++|++
T Consensus 158 ~~~-~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 158 HGA-ELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT 214 (347)
T ss_pred ehh-hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc
Confidence 998 567899999999986 69999999999999997 888988888889999999875
No 71
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.97 E-value=3e-29 Score=222.95 Aligned_cols=183 Identities=29% Similarity=0.330 Sum_probs=163.6
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||++++.++ +..+++++.+.|+|+++||+|++.++++|++|++...+..+ ...|.++|||++|+|+.+|++++.+++
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (339)
T cd08249 1 QKAAVLTGPG-GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI-PSYPAILGCDFAGTVVEVGSGVTRFKV 78 (339)
T ss_pred CceEEeccCC-CCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc-cCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence 7899999876 77899999999999999999999999999999987755441 124678999999999999999999999
Q ss_pred CCEEEEeCC-------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCC----------CCCCEE
Q 036416 150 GDIIAYAGG-------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV----------EPGHTV 212 (256)
Q Consensus 150 Gd~V~~~~~-------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~----------~~g~~V 212 (256)
||+|+++.. .+|+|++|+.++.+.++++|+++++++++.+++.+.|||+++....++ ++|++|
T Consensus 79 Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~v 158 (339)
T cd08249 79 GDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPV 158 (339)
T ss_pred CCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEE
Confidence 999998753 248999999999999999999999999999999999999998766554 789999
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|+|++|++|++++++|+.+|++|++++ +++|+++++++|++
T Consensus 159 lI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~ 200 (339)
T cd08249 159 LIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGAD 200 (339)
T ss_pred EEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCC
Confidence 9999999999999999999999999988 56889999999985
No 72
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=1.4e-28 Score=220.67 Aligned_cols=182 Identities=33% Similarity=0.439 Sum_probs=165.3
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||+++++++.+ +++++.+.|++++++|+|++.++++|+.|+..+.|.++. .+|.++|+|++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~ 77 (363)
T cd08279 1 MRAAVLHEVGKP--LEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA-PLPAVLGHEGAGVVEEVGPGVTGVKP 77 (363)
T ss_pred CeEEEEecCCCC--ceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC-CCCccccccceEEEEEeCCCccccCC
Confidence 799999987654 888999999999999999999999999999998887653 46789999999999999999999999
Q ss_pred CCEEEEeC----------------------------------------------CCCcceeeEEEecCCCeEECCCCCCH
Q 036416 150 GDIIAYAG----------------------------------------------GAMGSYAEEQILPANKVVPVPSSIDP 183 (256)
Q Consensus 150 Gd~V~~~~----------------------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~ 183 (256)
||+|+++. ...|+|++|+.++.+.++++|+++++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 78 GDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred CCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 99999842 12489999999999999999999999
Q ss_pred HHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 184 VIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 184 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++++.+++.+.+||.++...+++++|++|+|+| +|++|++++++|+.+|++ |++++.++++.++++++|++
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~ 229 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT 229 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe
Confidence 999999999999999988888999999999996 699999999999999996 99999999999999999975
No 73
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=3.6e-28 Score=214.34 Aligned_cols=183 Identities=40% Similarity=0.617 Sum_probs=168.5
Q ss_pred EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|++.+...+.++.+++++.+.|.|.++||+|++.++++|+.|+.+..|..+. ..+|.++|||++|+|+++|+++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 7899998888889999999999999999999999999999999988886543 346889999999999999999999999
Q ss_pred CCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHH
Q 036416 150 GDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWA 229 (256)
Q Consensus 150 Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la 229 (256)
||+|.++.. .|+|++|+.++.+.++++|+++++++++.+++.+.+||+++...+++++|++|+|+|++|++|++++++|
T Consensus 82 Gd~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a 160 (331)
T cd08273 82 GDRVAALTR-VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELA 160 (331)
T ss_pred CCEEEEeCC-CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 999998753 4899999999999999999999999999999999999999988788999999999999999999999999
Q ss_pred HHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 230 NALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 230 ~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+.+|++|++++. +++.++++++|++
T Consensus 161 ~~~g~~v~~~~~-~~~~~~~~~~g~~ 185 (331)
T cd08273 161 LLAGAEVYGTAS-ERNHAALRELGAT 185 (331)
T ss_pred HHcCCEEEEEeC-HHHHHHHHHcCCe
Confidence 999999999998 8889999999853
No 74
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.96 E-value=3.5e-28 Score=216.26 Aligned_cols=183 Identities=25% Similarity=0.190 Sum_probs=163.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++++.+++ .+++++.+.|+| .++||+|++.++++|+.|+..+.|.++...+|.++|||++|+|+++|++++.++
T Consensus 1 m~a~~~~~~~---~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 77 (345)
T cd08286 1 MKALVYHGPG---KISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFK 77 (345)
T ss_pred CceEEEecCC---ceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccC
Confidence 6888888554 488899999986 899999999999999999999998776555678999999999999999999999
Q ss_pred CCCEEEEeCC---------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHHHHH
Q 036416 149 VGDIIAYAGG---------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTAQFL 199 (256)
Q Consensus 149 ~Gd~V~~~~~---------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta~~~ 199 (256)
+||+|++... ..|+|++|+.++.+ .++++|++++..+++.+++.+.+||.+
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~ 157 (345)
T cd08286 78 VGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYEC 157 (345)
T ss_pred CCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHH
Confidence 9999987531 13889999999987 899999999999999999999999988
Q ss_pred HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHhCCCCC
Q 036416 200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+...+++++|++|+|+| +|++|.+++|+|+.+| .+|++++.+++|.++++++|+|+
T Consensus 158 ~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 214 (345)
T cd08286 158 GVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATH 214 (345)
T ss_pred HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCc
Confidence 77778899999999988 5999999999999999 68999888889999999999863
No 75
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.96 E-value=2.9e-28 Score=218.84 Aligned_cols=182 Identities=36% Similarity=0.481 Sum_probs=164.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCc---
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTG--- 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~--- 146 (256)
||++++..++. .+.+.+.|.|.++++||+|++.++++|++|+.+..|.++. .+|.++|||++|+|+.+|+++++
T Consensus 1 ~~a~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~ 77 (367)
T cd08263 1 MKAAVLKGPNP--PLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYG 77 (367)
T ss_pred CeeEEEecCCC--CcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCc
Confidence 68999987754 3778899999999999999999999999999998887654 46889999999999999999988
Q ss_pred cCCCCEEEEeC------------------------------------------------CCCcceeeEEEecCCCeEECC
Q 036416 147 RTVGDIIAYAG------------------------------------------------GAMGSYAEEQILPANKVVPVP 178 (256)
Q Consensus 147 ~~~Gd~V~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~ip 178 (256)
+++||+|++.. ...|+|++|+.++.+.++++|
T Consensus 78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P 157 (367)
T cd08263 78 LSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLP 157 (367)
T ss_pred CCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEECC
Confidence 99999998831 124899999999999999999
Q ss_pred CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++++.+++.+++.+.|||+++...+.+++|++|+|+| +|++|++++++|+.+|++ |++++.++++.++++++|++
T Consensus 158 ~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~ 234 (367)
T cd08263 158 ESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGAT 234 (367)
T ss_pred CCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence 99999999999999999999998888889999999996 799999999999999997 99999999999999999975
No 76
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.96 E-value=1.7e-28 Score=218.76 Aligned_cols=183 Identities=32% Similarity=0.475 Sum_probs=163.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC------------CCCCCCCCCcccEEEE
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK------------PAKMPFTPGMEAVGEV 137 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~------------~~~~p~~lG~e~~G~V 137 (256)
|||+.+..++.+ +++++.|.|+++++||+|++.++++|++|++.+.|.++ ...+|.++|+|++|+|
T Consensus 1 ~~a~~~~~~~~~--~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V 78 (350)
T cd08240 1 MKAAAVVEPGKP--LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEV 78 (350)
T ss_pred CeeEEeccCCCC--ceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEE
Confidence 788988876644 78889999999999999999999999999999887643 1235678999999999
Q ss_pred EEeCCCCCccCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhch
Q 036416 138 VAVGPGLTGRTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIML 191 (256)
Q Consensus 138 ~~vG~~v~~~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~ 191 (256)
+++|++++++++||+|++++. ..|++++|+.++.+.++++|+++++.+++.+.+
T Consensus 79 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~ 158 (350)
T cd08240 79 VAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLAC 158 (350)
T ss_pred EeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhc
Confidence 999999999999999987621 248999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 192 KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 192 ~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.+.|||+++.....+++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.+.++++|++
T Consensus 159 ~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~ 222 (350)
T cd08240 159 SGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGAD 222 (350)
T ss_pred hhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence 9999999998877777899999997 79999999999999999 789999999999999999975
No 77
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.96 E-value=4.8e-28 Score=215.98 Aligned_cols=180 Identities=28% Similarity=0.322 Sum_probs=157.0
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---------CCCCCCCCcccEEEEEEe
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---------AKMPFTPGMEAVGEVVAV 140 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---------~~~p~~lG~e~~G~V~~v 140 (256)
||+++++++ ..+++++.+.|++.+++|+||+.++++|+.|++.+.|.... ..+|.++|||++|+|+++
T Consensus 1 mka~~~~~~---~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~v 77 (350)
T cd08256 1 MRAVVCHGP---QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVEL 77 (350)
T ss_pred CeeEEEecC---CceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEe
Confidence 789999854 45899999999999999999999999999999988875311 136778999999999999
Q ss_pred CCCCC--ccCCCCEEEEeC----------------------------CCCcceeeEEEecCC-CeEECCCCCCHHHHhhh
Q 036416 141 GPGLT--GRTVGDIIAYAG----------------------------GAMGSYAEEQILPAN-KVVPVPSSIDPVIAASI 189 (256)
Q Consensus 141 G~~v~--~~~~Gd~V~~~~----------------------------~~~G~~a~~~~v~~~-~~~~ip~~~~~~~aa~l 189 (256)
|++++ ++++||+|++.. ...|+|++|+.++.+ .++++|+++++++++.+
T Consensus 78 G~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~ 157 (350)
T cd08256 78 GEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI 157 (350)
T ss_pred CCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhh
Confidence 99999 899999998721 135899999999988 57899999999999988
Q ss_pred chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
..+.++|+++ ..+++++|++|+|.| +|++|++++++|+.+|+. ++++++++++.++++++|++
T Consensus 158 -~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~ 221 (350)
T cd08256 158 -EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGAD 221 (350)
T ss_pred -hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCc
Confidence 8899999998 667999999999955 799999999999999985 77788889999999999975
No 78
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.96 E-value=3.8e-28 Score=214.12 Aligned_cols=179 Identities=34% Similarity=0.474 Sum_probs=157.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++..++ ++.+++++.+.|+++++||+|++.++++|++|++...+.. ...+|.++|||++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (325)
T cd08264 1 MKALVFEKSG-IENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-VKPMPHIPGAEFAGVVEEVGDHVKGVKK 78 (325)
T ss_pred CeeEEeccCC-CCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-CCCCCeecccceeEEEEEECCCCCCCCC
Confidence 6889988766 6778888888888999999999999999999998876532 2235778999999999999999999999
Q ss_pred CCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 150 GDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
||+|++... ..|+|++|+.++.+.++++|+++++++++.+++.+.+||+++..
T Consensus 79 Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~- 157 (325)
T cd08264 79 GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT- 157 (325)
T ss_pred CCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-
Confidence 999987521 24899999999999999999999999999999999999999865
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++++|++|+|+|++|++|++++++|+.+|++|+++++ .++++++|++
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~~~g~~ 205 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWLKEFGAD 205 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHHHHhCCC
Confidence 79999999999998899999999999999999988863 3667888875
No 79
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.96 E-value=3.4e-28 Score=219.19 Aligned_cols=179 Identities=25% Similarity=0.176 Sum_probs=158.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++++.+ ++.++++++|+|.+ +++||+||+.++++|++|++.+.|.++. .+|.++|||++|+|+++|+++..++
T Consensus 1 m~~~~~~~---~~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~-~~p~~~g~e~~G~V~~vG~~v~~~~ 76 (375)
T cd08282 1 MKAVVYGG---PGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA-EPGLVLGHEAMGEVEEVGSAVESLK 76 (375)
T ss_pred CceEEEec---CCceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC-CCCceeccccEEEEEEeCCCCCcCC
Confidence 67888874 44689999999986 7999999999999999999999887653 3688999999999999999999999
Q ss_pred CCCEEEEeCC------------------------------------CCcceeeEEEecCC--CeEECCCCCCHH---HHh
Q 036416 149 VGDIIAYAGG------------------------------------AMGSYAEEQILPAN--KVVPVPSSIDPV---IAA 187 (256)
Q Consensus 149 ~Gd~V~~~~~------------------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~---~aa 187 (256)
+||+|++... .+|+|++|+.+|.. .++++|++++++ +++
T Consensus 77 ~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a 156 (375)
T cd08282 77 VGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYL 156 (375)
T ss_pred CCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhhee
Confidence 9999987211 13889999999976 899999999998 467
Q ss_pred hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCC
Q 036416 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga 254 (256)
.++..+.+||+++ ..+++++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.++++++|+
T Consensus 157 ~~~~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~ 222 (375)
T cd08282 157 MLSDIFPTGWHGL-ELAGVQPGDTVAVFG-AGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222 (375)
T ss_pred eecchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 7888999999998 678999999999987 69999999999999998 79999899999999999996
No 80
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.96 E-value=2.6e-28 Score=217.17 Aligned_cols=185 Identities=31% Similarity=0.403 Sum_probs=162.7
Q ss_pred eEEEEEcccCCCC-ceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCC---------------CCCCCCCCCcc
Q 036416 70 VKAIRVYEHGDPE-VLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYK---------------PAKMPFTPGME 132 (256)
Q Consensus 70 ~~a~~~~~~~~~~-~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~~lG~e 132 (256)
|||+++++++.++ .+.+++.+.|+| +++||+|++.++++|+.|+++..|... ...+|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 7889988877753 478889999999 599999999999999999998877421 23468899999
Q ss_pred cEEEEEEeCCCCCccCCCCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC--
Q 036416 133 AVGEVVAVGPGLTGRTVGDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP-- 208 (256)
Q Consensus 133 ~~G~V~~vG~~v~~~~~Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-- 208 (256)
++|+|+++|+++.++++||+|++... ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++...+.+.+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~ 160 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKN 160 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCcc
Confidence 99999999999999999999998752 24899999999999999999999999999999999999999888777754
Q ss_pred --CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 209 --GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 209 --g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|++|+|+|++|++|++++++|+.+|++|++++.+ ++.+.++++|++
T Consensus 161 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~ 208 (350)
T cd08248 161 AAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGAD 208 (350)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCc
Confidence 9999999999999999999999999999988865 677888888874
No 81
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.96 E-value=4.5e-28 Score=215.16 Aligned_cols=181 Identities=29% Similarity=0.412 Sum_probs=161.8
Q ss_pred EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG 150 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G 150 (256)
|++..++.+ .++++.+++.|.|.++||+||+.++++|++|++.+.|......+|.++|||++|+|+++|++++++++|
T Consensus 1 ~~~~~~~~~--~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (337)
T cd05283 1 KGYAARDAS--GKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVG 78 (337)
T ss_pred CceEEecCC--CCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCC
Confidence 356666554 569999999999999999999999999999999998876555578999999999999999999999999
Q ss_pred CEEEEeC----------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHH
Q 036416 151 DIIAYAG----------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTA 196 (256)
Q Consensus 151 d~V~~~~----------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta 196 (256)
|+|++.. ...|+|++|+.++.+.++++|+++++++++.+.+.+.+|
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta 158 (337)
T cd05283 79 DRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITV 158 (337)
T ss_pred CEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHH
Confidence 9997420 225899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|+++... .+++|++|+|.| +|++|++++++|+.+|++|+++++++++.++++++|++
T Consensus 159 ~~~~~~~-~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~ 215 (337)
T cd05283 159 YSPLKRN-GVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGAD 215 (337)
T ss_pred HHHHHhc-CCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCc
Confidence 9998664 689999999987 79999999999999999999999999999999999976
No 82
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.96 E-value=6.5e-28 Score=213.86 Aligned_cols=180 Identities=32% Similarity=0.364 Sum_probs=160.0
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||+.++.+ +.+++.+.+.|++.++||+|+|.++++|+.|+.+..|..+...+|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~a~~~~~~---~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~ 77 (337)
T cd08261 1 MKALVCEKP---GRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKV 77 (337)
T ss_pred CeEEEEeCC---CceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCC
Confidence 688888854 45889999999999999999999999999999998887655556789999999999999999999999
Q ss_pred CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
||+|++.. ...|+|++|+.++.+ ++++|+++++++++.+ ..+.++++++ ..
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~ 154 (337)
T cd08261 78 GDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RR 154 (337)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-Hh
Confidence 99998731 125899999999999 9999999999999876 6778888887 67
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+++++|++|||+| +|++|.+++|+|+.+|++|++++.++++.++++++|+++
T Consensus 155 ~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~ 206 (337)
T cd08261 155 AGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADD 206 (337)
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCE
Confidence 7999999999997 699999999999999999999999999999999998763
No 83
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.96 E-value=3.6e-28 Score=215.70 Aligned_cols=179 Identities=25% Similarity=0.276 Sum_probs=156.3
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC-----------CCCCCCCCCcccEEEEE
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-----------PAKMPFTPGMEAVGEVV 138 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-----------~~~~p~~lG~e~~G~V~ 138 (256)
||++++..+ .+++++.+.|+++++||+|++.++++|+.|++...|... ...+|.++|+|++|+|+
T Consensus 1 m~a~~~~~~----~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~ 76 (341)
T cd08262 1 MRAAVFRDG----PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVV 76 (341)
T ss_pred CceEEEeCC----ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEE
Confidence 688888744 588899999999999999999999999999999887321 22357889999999999
Q ss_pred EeCCCCCc-cCCCCEEEEeCC----------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHH
Q 036416 139 AVGPGLTG-RTVGDIIAYAGG----------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLR 201 (256)
Q Consensus 139 ~vG~~v~~-~~~Gd~V~~~~~----------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~ 201 (256)
++|+++++ +++||+|++++. ..|+|++|+.++.+.++++|+++++++++ ++..+.+||+++
T Consensus 77 ~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~- 154 (341)
T cd08262 77 DYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV- 154 (341)
T ss_pred EeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-
Confidence 99999997 999999998731 25899999999999999999999999877 667888999885
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
..+++++|++|||+| +|++|.+++|+|+.+|++ +++++.++++.++++++|++
T Consensus 155 ~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~ 208 (341)
T cd08262 155 RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGAD 208 (341)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCc
Confidence 667999999999997 599999999999999996 66777788999999999975
No 84
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.96 E-value=3.6e-28 Score=213.51 Aligned_cols=179 Identities=36% Similarity=0.555 Sum_probs=161.9
Q ss_pred cccCCCC--ceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCCCCE
Q 036416 76 YEHGDPE--VLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTVGDI 152 (256)
Q Consensus 76 ~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~ 152 (256)
+.++.+. .+++++.+.|.+.+++|+|++.++++|+.|...+.|.+.. ..+|.++|||++|+|+++|++++.+++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~ 83 (323)
T cd05282 4 TQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQR 83 (323)
T ss_pred CcCCCCccceEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCE
Confidence 4445554 7888888999999999999999999999999988776543 346789999999999999999999999999
Q ss_pred EEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHc
Q 036416 153 IAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL 232 (256)
Q Consensus 153 V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ 232 (256)
|+++.. .|+|++|+.++...++++|+++++.+++.+++.+.+||+++...+.+.+|++|+|+|++|++|++++++|+.+
T Consensus 84 V~~~~~-~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~ 162 (323)
T cd05282 84 VLPLGG-EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLL 162 (323)
T ss_pred EEEeCC-CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHC
Confidence 999762 2899999999999999999999999999999999999999988888999999999998899999999999999
Q ss_pred CCeEEEEeCChhhHHHHHhCCCC
Q 036416 233 GATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 233 ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|+++++++++++++++++++|++
T Consensus 163 g~~v~~~~~~~~~~~~~~~~g~~ 185 (323)
T cd05282 163 GFKTINVVRRDEQVEELKALGAD 185 (323)
T ss_pred CCeEEEEecChHHHHHHHhcCCC
Confidence 99999999999999999999985
No 85
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.96 E-value=8.2e-28 Score=210.08 Aligned_cols=186 Identities=35% Similarity=0.563 Sum_probs=169.4
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++.+..++.+..+.+.+++.|.+.+++|+|++.++++|++|+....|..+. ...|.++|||++|+|+++|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 67888887776777888999999999999999999999999999988776542 44688999999999999999999999
Q ss_pred CCCEEEEeCC----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416 149 VGDIIAYAGG----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 149 ~Gd~V~~~~~----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ 224 (256)
+||+|++... ..|++++|+.++.+.++++|+++++++++.+++.+.+||+++...+++.+|++|+|+|++|++|++
T Consensus 81 ~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~ 160 (325)
T cd08253 81 VGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHA 160 (325)
T ss_pred CCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHH
Confidence 9999998752 248999999999999999999999999999999999999999887899999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++++++.+|++|+++++++++.++++++|++
T Consensus 161 ~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~ 191 (325)
T cd08253 161 AVQLARWAGARVIATASSAEGAELVRQAGAD 191 (325)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999988875
No 86
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.96 E-value=1.2e-27 Score=212.38 Aligned_cols=180 Identities=33% Similarity=0.375 Sum_probs=159.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++.+++++ .+.+++.+.|++.+++|+|++.++++|+.|+.+..|.++....|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~ 77 (343)
T cd08235 1 MKAAVLHGPN---DVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKV 77 (343)
T ss_pred CeEEEEecCC---ceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCC
Confidence 6889998654 4888999999999999999999999999999998886643345779999999999999999999999
Q ss_pred CCEEEEeCC--------------------------CCcceeeEEEecCCC-----eEECCCCCCHHHHhhhchhHHHHHH
Q 036416 150 GDIIAYAGG--------------------------AMGSYAEEQILPANK-----VVPVPSSIDPVIAASIMLKGMTAQF 198 (256)
Q Consensus 150 Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~-----~~~ip~~~~~~~aa~l~~~~~ta~~ 198 (256)
||+|++... ..|+|++|+.++... ++++|+++++.+++.+ ..+.+||+
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~ 156 (343)
T cd08235 78 GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCIN 156 (343)
T ss_pred CCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHHH
Confidence 999998621 358999999999988 9999999999999765 78899999
Q ss_pred HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++.. .++++|++|+|+| +|++|.+++|+|+..|++ |++++.++++.++++++|++
T Consensus 157 ~l~~-~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~ 212 (343)
T cd08235 157 AQRK-AGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGAD 212 (343)
T ss_pred HHHh-cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 9865 4899999999997 699999999999999998 99999999999998888875
No 87
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.96 E-value=1e-27 Score=209.13 Aligned_cols=185 Identities=40% Similarity=0.555 Sum_probs=168.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++++.+.+.++.+.+.+.+.|.+.+++|+||+.++++|+.|++...|.++. ...|.++|||++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 79999998877888888888888889999999999999999999988776543 34578999999999999999999999
Q ss_pred CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416 149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228 (256)
Q Consensus 149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l 228 (256)
+||+|+++.. +|+|++|+.++.+.++++|+++++.+++.++..+.++|+++...+.+.+|++|+|+|++|++|++++++
T Consensus 81 ~Gd~V~~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~ 159 (323)
T cd05276 81 VGDRVCALLA-GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQL 159 (323)
T ss_pred CCCEEEEecC-CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHH
Confidence 9999998753 489999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 229 ANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++..|++|+++++++++.++++++|++
T Consensus 160 ~~~~g~~v~~~~~~~~~~~~~~~~g~~ 186 (323)
T cd05276 160 AKALGARVIATAGSEEKLEACRALGAD 186 (323)
T ss_pred HHHcCCEEEEEcCCHHHHHHHHHcCCC
Confidence 999999999999998999999888864
No 88
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=1.5e-27 Score=210.35 Aligned_cols=185 Identities=38% Similarity=0.495 Sum_probs=167.9
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|||++++..+.++.+++++.+.|.++++|++|++.++++|++|++...|.++. ...|.++|||++|+|+++|+++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 78999998877778999888888899999999999999999999988876543 33678999999999999999999999
Q ss_pred CCCEEEEeCC--------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCC
Q 036416 149 VGDIIAYAGG--------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEP 208 (256)
Q Consensus 149 ~Gd~V~~~~~--------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 208 (256)
+||+|++... .+|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++...+.+++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 160 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKP 160 (336)
T ss_pred CCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCC
Confidence 9999998651 14889999999999999999999999999999999999999988889999
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|++|+|+| +|++|++++++|+.+|++|++++.++++.++++++|++
T Consensus 161 g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~ 206 (336)
T cd08276 161 GDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGAD 206 (336)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence 99999996 79999999999999999999999999999999888875
No 89
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.96 E-value=1.2e-27 Score=212.58 Aligned_cols=180 Identities=27% Similarity=0.271 Sum_probs=160.0
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCC-CCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPG-EGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++++..+ +.++++++++|+|. ++||+|++.++++|+.|++...|.++. .+|.++|+|++|+|+++|++++.++
T Consensus 1 ~~a~~~~~~---~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (344)
T cd08284 1 MKAVVFKGP---GDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS-TPGFVLGHEFVGEVVEVGPEVRTLK 76 (344)
T ss_pred CeeEEEecC---CCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC-CCCcccccceEEEEEeeCCCccccC
Confidence 678888743 46899999999985 999999999999999999988887653 3578999999999999999999999
Q ss_pred CCCEEEEeCC------------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHhhhchhHHHH
Q 036416 149 VGDIIAYAGG------------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAASIMLKGMTA 196 (256)
Q Consensus 149 ~Gd~V~~~~~------------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa~l~~~~~ta 196 (256)
+||+|++... .+|+|++|+.++.+ .++++|+++++++++.+++.+.||
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta 156 (344)
T cd08284 77 VGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTG 156 (344)
T ss_pred CCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHH
Confidence 9999997531 14899999999975 999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 197 QFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 197 ~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|+++.. +++++|++|+|+| +|++|++++++|+.+|+ +|++++.+++|.++++++|++
T Consensus 157 ~~~~~~-~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~ 214 (344)
T cd08284 157 YFGAKR-AQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE 214 (344)
T ss_pred HhhhHh-cCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe
Confidence 999865 7899999999997 79999999999999997 899998888999999999963
No 90
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.96 E-value=2.2e-27 Score=208.25 Aligned_cols=183 Identities=29% Similarity=0.410 Sum_probs=160.0
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||+++.++. .+..+.+++++.|.+.+++|+|++.++++|+.|++...|.+.....|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 79 (306)
T cd08258 1 MKALVKTGP-GPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKV 79 (306)
T ss_pred CeeEEEecC-CCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCC
Confidence 578888763 3466999999999999999999999999999999988887643345789999999999999999999999
Q ss_pred CCEEEEeCC---------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 150 GDIIAYAGG---------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 150 Gd~V~~~~~---------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
||+|++... ..|+|++|++++...++++|+++++++++ ++..+.++|+++..
T Consensus 80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~ 158 (306)
T cd08258 80 GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAE 158 (306)
T ss_pred CCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHH
Confidence 999998642 24899999999999999999999999886 77888999999988
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe--CChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV--STKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~--~~~~~~~~~~~~Ga~ 255 (256)
.+++++|++|+|.| +|++|.+++|+|+.+|++|+.++ .++++.+.++++|++
T Consensus 159 ~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCc
Confidence 88999999999977 79999999999999999988773 345678888999985
No 91
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.96 E-value=1.6e-27 Score=210.56 Aligned_cols=184 Identities=37% Similarity=0.480 Sum_probs=166.0
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC-CCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++.+..++.+. +.+.+.+.|.+++++|+|++.++++|+.|+....|.++ ...+|.++|+|++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~ 79 (338)
T cd08254 1 MKAWRFHKGSKGL-LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFK 79 (338)
T ss_pred CeeEEEecCCCCc-eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCC
Confidence 7899999888776 77888888999999999999999999999999888765 234577899999999999999999999
Q ss_pred CCCEEEE------------------eC--------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 149 VGDIIAY------------------AG--------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 149 ~Gd~V~~------------------~~--------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
+||+|++ +. ...|+|++|+.++.+.++++|+++++++++.++..+.|||+++..
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~ 159 (338)
T cd08254 80 VGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVR 159 (338)
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHh
Confidence 9999986 11 114899999999999999999999999999999999999999988
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
..+++++++|||.| +|++|++++++|+.+|++|++++.++++.+.++++|++
T Consensus 160 ~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~ 211 (338)
T cd08254 160 AGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD 211 (338)
T ss_pred ccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC
Confidence 88899999999986 69999999999999999999999999999999999875
No 92
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=2.4e-27 Score=207.62 Aligned_cols=185 Identities=37% Similarity=0.479 Sum_probs=167.4
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||+++++.++.++.+.+++.+.|.+.+++|+|++.++++|++|+....|.... ...|.++|||++|+|+.+|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 78999998888878888888888889999999999999999999988776432 23577899999999999999999999
Q ss_pred CCCEEEEeCC----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416 149 VGDIIAYAGG----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 149 ~Gd~V~~~~~----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ 224 (256)
+||+|+++.. ..|+|++|+.++...++++|+++++.+++.+++.+.+||+++....++++|++++|+|++|++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~ 160 (326)
T cd08272 81 VGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHV 160 (326)
T ss_pred CCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHH
Confidence 9999998751 248999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++++|+.+|++|++++.+ ++.++++++|++
T Consensus 161 ~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~ 190 (326)
T cd08272 161 AVQLAKAAGARVYATASS-EKAAFARSLGAD 190 (326)
T ss_pred HHHHHHHcCCEEEEEech-HHHHHHHHcCCC
Confidence 999999999999999988 889999888874
No 93
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.96 E-value=2.8e-27 Score=208.15 Aligned_cols=174 Identities=28% Similarity=0.286 Sum_probs=151.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||+++.++ ..+++++++.|+++++||+||+.++++|++|++...|.++ .|.++|||++|+|+++|++ +++
T Consensus 1 ~~a~~~~~~---~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~ 71 (319)
T cd08242 1 MKALVLDGG---LDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELV 71 (319)
T ss_pred CeeEEEeCC---CcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCC
Confidence 689999854 3599999999999999999999999999999999888654 5789999999999999988 679
Q ss_pred CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
||+|.... ..+|+|++|++++.+.++++|+++++++++.+ ....++|..+ .
T Consensus 72 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~-~ 149 (319)
T cd08242 72 GKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL-E 149 (319)
T ss_pred CCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-H
Confidence 99996421 12589999999999999999999999988753 3444555554 6
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
..++++|++|+|+| +|++|++++|+|+.+|++|++++.++++.++++++|++
T Consensus 150 ~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~ 201 (319)
T cd08242 150 QVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVE 201 (319)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCc
Confidence 67899999999997 79999999999999999999999999999999999986
No 94
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.96 E-value=3.8e-27 Score=205.17 Aligned_cols=183 Identities=56% Similarity=0.956 Sum_probs=165.5
Q ss_pred EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG 150 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G 150 (256)
+|+.....+.+..+.+.+.+.|.+.++||+|++.++++|+.|++...+..+. .+|.++|||++|+|+.+|+++.++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 4666776666777888888877889999999999999999999998876643 357789999999999999999999999
Q ss_pred CEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHH
Q 036416 151 DIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWAN 230 (256)
Q Consensus 151 d~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~ 230 (256)
|+|+++. ..|++++|+.++.+.++++|+++++.+++.+++.+.++|+++...+++++|++|+|+|++|++|++++++|+
T Consensus 80 ~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~ 158 (320)
T cd05286 80 DRVAYAG-PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAK 158 (320)
T ss_pred CEEEEec-CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence 9999876 138999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 231 ALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 231 ~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.+|++|++++.++++.++++++|++
T Consensus 159 ~~g~~v~~~~~~~~~~~~~~~~g~~ 183 (320)
T cd05286 159 ALGATVIGTVSSEEKAELARAAGAD 183 (320)
T ss_pred HcCCEEEEEcCCHHHHHHHHHCCCC
Confidence 9999999999999999999999975
No 95
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.96 E-value=3e-27 Score=209.94 Aligned_cols=179 Identities=34% Similarity=0.449 Sum_probs=159.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||+++++++ .+.+++.+.|+++++||+||+.++++|+.|+..+.|.+.. ..|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~---~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~-~~~~~~g~~~~G~V~~~g~~v~~~~~ 76 (343)
T cd08236 1 MKALVLTGPG---DLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY-HPPLVLGHEFSGTVEEVGSGVDDLAV 76 (343)
T ss_pred CeeEEEecCC---ceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC-CCCcccCcceEEEEEEECCCCCcCCC
Confidence 6899998654 4888999999999999999999999999999988776532 35788999999999999999999999
Q ss_pred CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
||+|+++. ...|+|++|+.+|.+.++++|+++++++++.+ ..+.+||+++. .
T Consensus 77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~ 154 (343)
T cd08236 77 GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-L 154 (343)
T ss_pred CCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-h
Confidence 99999862 13589999999999999999999999999877 67889999986 6
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++++|++|+|+| +|.+|.+++|+|+.+|++ |++++.++++.++++++|++
T Consensus 155 ~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~ 206 (343)
T cd08236 155 AGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGAD 206 (343)
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence 7899999999997 699999999999999997 99999999999999989874
No 96
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.96 E-value=6.2e-27 Score=206.32 Aligned_cols=186 Identities=38% Similarity=0.570 Sum_probs=166.8
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++++...+.+..+.+.+.+.|.+.+++|+|++.++++|++|++.+.|..+. ...|.++|||++|+|+.+|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 68899887777778888888888899999999999999999999998886542 24578999999999999999999999
Q ss_pred CCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 149 VGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 149 ~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
+||+|++... ..|++++|+.++.+.++++|+++++++++.+++.+.+||+++..
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~ 160 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVT 160 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence 9999998631 24889999999999999999999999999999999999999888
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
..++++|++++|+|+++++|++++++++..|++|+.+++++++.+.++++|++
T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 213 (342)
T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGAD 213 (342)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence 88999999999999988999999999999999999999999898888877753
No 97
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=4.3e-27 Score=208.00 Aligned_cols=179 Identities=34% Similarity=0.432 Sum_probs=159.7
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|||+++.+++ .+++.+.+.|++.++||+||+.++++|+.|+....|.++.. +|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~---~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~-~p~~~g~~~~G~v~~vG~~v~~~~~ 76 (334)
T cd08234 1 MKALVYEGPG---ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA-PPLVPGHEFAGVVVAVGSKVTGFKV 76 (334)
T ss_pred CeeEEecCCC---ceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCC-CCcccccceEEEEEEeCCCCCCCCC
Confidence 6899998654 58889999999999999999999999999999998876543 7889999999999999999999999
Q ss_pred CCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 150 GDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 150 Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
||+|++.. ...|+|++|+.++.+.++++|+++++.+++.+ ..+.++++++ ..
T Consensus 77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~ 154 (334)
T cd08234 77 GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DL 154 (334)
T ss_pred CCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-Hh
Confidence 99998721 12589999999999999999999999998765 7788899888 67
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+++++|++|+|+| +|++|.+++++|+.+|++ |++++.++++.++++++|++
T Consensus 155 ~~~~~g~~vlI~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~ 206 (334)
T cd08234 155 LGIKPGDSVLVFG-AGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT 206 (334)
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe
Confidence 8999999999997 699999999999999997 89999999999999988874
No 98
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=8.3e-27 Score=204.50 Aligned_cols=185 Identities=37% Similarity=0.498 Sum_probs=165.2
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
||++++.+++..+.+.+++.+.|++.+++|+|++.++++|+.|+....+.......|.++|||++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 78999997664346999999999999999999999999999999988776543334778999999999999999999999
Q ss_pred CCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416 150 GDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ 227 (256)
Q Consensus 150 Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~ 227 (256)
||+|.+... ..|+|++|+.++.+.++++|+++++.+++.+++.+.+|++++...+++++|++|+|+|++|++|+++++
T Consensus 81 Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~ 160 (325)
T cd08271 81 GDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQ 160 (325)
T ss_pred CCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHH
Confidence 999998752 248999999999999999999999999999999999999999888899999999999988999999999
Q ss_pred HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 228 WANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|+..|++|+++. ++++.++++++|++
T Consensus 161 ~a~~~g~~v~~~~-~~~~~~~~~~~g~~ 187 (325)
T cd08271 161 LAKRAGLRVITTC-SKRNFEYVKSLGAD 187 (325)
T ss_pred HHHHcCCEEEEEE-cHHHHHHHHHcCCc
Confidence 9999999999887 67788888888875
No 99
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.95 E-value=7.5e-27 Score=206.24 Aligned_cols=181 Identities=34% Similarity=0.532 Sum_probs=161.9
Q ss_pred EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCC
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVG 150 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G 150 (256)
|++++.++|. .+++++.|.|.+.+++|+|++.++++|+.|++.+.|.++...+|.++|||++|+|+++|++++++++|
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~G 78 (330)
T cd08245 1 KAAVVHAAGG--PLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVG 78 (330)
T ss_pred CeEEEecCCC--CceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccC
Confidence 5678876643 58889999999999999999999999999999998876555578899999999999999999999999
Q ss_pred CEEEEeC-------------------------C--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHH
Q 036416 151 DIIAYAG-------------------------G--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRC 203 (256)
Q Consensus 151 d~V~~~~-------------------------~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~ 203 (256)
|+|+... . ..|+|++|+.++.+.++++|+++++++++.+++.+.+||+++..
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~- 157 (330)
T cd08245 79 DRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD- 157 (330)
T ss_pred CEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-
Confidence 9998421 1 25899999999999999999999999999999999999999866
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.++++|++|+|+| +|++|++++++|+.+|++|+++++++++.++++++|++
T Consensus 158 ~~~~~~~~vlI~g-~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~ 208 (330)
T cd08245 158 AGPRPGERVAVLG-IGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGAD 208 (330)
T ss_pred hCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCc
Confidence 6899999999997 68899999999999999999999999999999999875
No 100
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.95 E-value=7e-27 Score=208.51 Aligned_cols=184 Identities=24% Similarity=0.228 Sum_probs=154.8
Q ss_pred EEEEEcccCCCCceEEEEeeCCC-CCCCeEEEEEeEEeeChhhhHhHhCCCCCCC-CCCCCCcccEEEEEEeCCCCC-cc
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGE-PGEGEIRVRNKAIGLNFIDVYYRKGVYKPAK-MPFTPGMEAVGEVVAVGPGLT-GR 147 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~-~p~~lG~e~~G~V~~vG~~v~-~~ 147 (256)
|++++.+++++..++..+.|.|. +++++|+|++.++++|++|+....+...... .|.++|+|++|+|+++|++++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 67888888877555555555554 4999999999999999999988765332222 377899999999999999998 89
Q ss_pred CCCCEEEEeCC----CCcceeeEEEecCC----CeEECCCCCCHHHHhhhchhHHHHHHHHHHHc-CCCCCCEEEEecCC
Q 036416 148 TVGDIIAYAGG----AMGSYAEEQILPAN----KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF-KVEPGHTVLIQAAA 218 (256)
Q Consensus 148 ~~Gd~V~~~~~----~~G~~a~~~~v~~~----~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~ga~ 218 (256)
++||+|++... ..|+|++|++++.. .++++|+++++++++.+++.+.|||+++.... ++++|++|+|+|++
T Consensus 82 ~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~ 161 (352)
T cd08247 82 KVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGS 161 (352)
T ss_pred CCCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCC
Confidence 99999998752 24899999999987 78999999999999999999999999998877 79999999999998
Q ss_pred ChHHHHHHHHHHHcC-C-eEEEEeCChhhHHHHHhCCCC
Q 036416 219 GGVGSLLCQWANALG-A-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 219 g~vG~~ai~la~~~g-a-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|++|.+++++|+.+| . .|+++.. +++.++++++|++
T Consensus 162 ~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~~~~g~~ 199 (352)
T cd08247 162 TSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELNKKLGAD 199 (352)
T ss_pred chHHHHHHHHHHhcCCcceEEEEeC-hhHHHHHHHhCCC
Confidence 999999999999984 5 5777665 5566788999985
No 101
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=1.4e-26 Score=202.80 Aligned_cols=186 Identities=40% Similarity=0.582 Sum_probs=167.5
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||++.++..+.++.+.+.+.+.|.+++++++|++.++++|+.|+....+.... ..+|.++|||++|+|+.+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 68888887777778888888888889999999999999999999887775432 23477899999999999999999999
Q ss_pred CCCEEEEeCC----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416 149 VGDIIAYAGG----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 149 ~Gd~V~~~~~----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ 224 (256)
+||+|.++.. ..|++++|+.++.+.++++|+++++++++.+++.+.++|.++.....+.++++|+|+|++|++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~ 160 (328)
T cd08268 81 VGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLA 160 (328)
T ss_pred CCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHH
Confidence 9999998743 348999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++++++..|++++.++.++++.++++++|++
T Consensus 161 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~ 191 (328)
T cd08268 161 AIQIANAAGATVIATTRTSEKRDALLALGAA 191 (328)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999988888864
No 102
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.95 E-value=1.1e-26 Score=206.36 Aligned_cols=181 Identities=29% Similarity=0.320 Sum_probs=152.8
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC---CCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---KPAKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
||++++.+++ +.+++.+.|.|.|+++||+||+.++++|++|++++.+.. ....+|.++|||++|+|+++|++++.
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~ 78 (341)
T PRK05396 1 MKALVKLKAE--PGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTG 78 (341)
T ss_pred CceEEEecCC--CceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCc
Confidence 6889998755 458999999999999999999999999999999876632 12236779999999999999999999
Q ss_pred cCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416 147 RTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL 200 (256)
Q Consensus 147 ~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l 200 (256)
+++||+|++... .+|+|++|+.++.+.++++|+++++++++.+ ..+.++++++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~ 157 (341)
T PRK05396 79 FKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTA 157 (341)
T ss_pred CCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHHH
Confidence 999999987621 2589999999999999999999999888744 5556665554
Q ss_pred HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
.. ...+|++|+|+| +|++|++++|+|+.+|+ +|++++.++++.++++++|+|+
T Consensus 158 ~~--~~~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~ 211 (341)
T PRK05396 158 LS--FDLVGEDVLITG-AGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATR 211 (341)
T ss_pred Hc--CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence 32 346899999987 69999999999999999 6888888899999999999863
No 103
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.95 E-value=1.4e-26 Score=205.83 Aligned_cols=181 Identities=24% Similarity=0.237 Sum_probs=152.8
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCC-CCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEP-GEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
||+++++++ +.+++++.|.|.| +++||+||+.++++|++|++.+.|.++. ..|.++|||++|+|+++|+++..++
T Consensus 1 m~~~~~~~~---~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (345)
T cd08287 1 MRATVIHGP---GDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVK 76 (345)
T ss_pred CceeEEecC---CceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccC
Confidence 688999854 4588999999986 8999999999999999999988887653 3578999999999999999999999
Q ss_pred CCCEEEEe-CC-------------------------CCcceeeEEEecCC--CeEECCCCCCHHHHh-----hhchhHHH
Q 036416 149 VGDIIAYA-GG-------------------------AMGSYAEEQILPAN--KVVPVPSSIDPVIAA-----SIMLKGMT 195 (256)
Q Consensus 149 ~Gd~V~~~-~~-------------------------~~G~~a~~~~v~~~--~~~~ip~~~~~~~aa-----~l~~~~~t 195 (256)
+||+|++. .. ..|+|++|+.++.+ .++++|++++++.+. ++...+.+
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~ 156 (345)
T cd08287 77 PGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGT 156 (345)
T ss_pred CCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHH
Confidence 99999872 11 13899999999975 899999999883221 22356888
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416 196 AQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 196 a~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
||+++. .+++++|++|+|+| +|++|++++|+|+.+|++ ++++++++++.++++++|+++
T Consensus 157 a~~~~~-~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~ 216 (345)
T cd08287 157 GHHAAV-SAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATD 216 (345)
T ss_pred HHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCce
Confidence 998875 57899999999987 799999999999999995 888888888899999999853
No 104
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.95 E-value=1.4e-26 Score=201.06 Aligned_cols=185 Identities=42% Similarity=0.608 Sum_probs=164.8
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
|+++.+..++..+.+.+++.+.|.++++||+|++.++++|+.|+....|... ....|.++|||++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 6788888877766677888888888999999999999999999998877642 2345789999999999999999999
Q ss_pred cCCCCEEEEeC--CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH
Q 036416 147 RTVGDIIAYAG--GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 147 ~~~Gd~V~~~~--~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ 224 (256)
+++||+|+++. +..|+|++|+.++...++++|+++++..++.+++.+.++|+++.....+.+|++|+|+|++|++|++
T Consensus 81 ~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~ 160 (309)
T cd05289 81 FKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSF 160 (309)
T ss_pred CCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHH
Confidence 99999999876 1238999999999999999999999999999999999999999887779999999999988999999
Q ss_pred HHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 225 LCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 225 ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++++++..|++|++++.++ +.++++++|++
T Consensus 161 ~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~ 190 (309)
T cd05289 161 AVQLAKARGARVIATASAA-NADFLRSLGAD 190 (309)
T ss_pred HHHHHHHcCCEEEEEecch-hHHHHHHcCCC
Confidence 9999999999999998877 88888888864
No 105
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.95 E-value=7.6e-27 Score=207.09 Aligned_cols=186 Identities=32% Similarity=0.442 Sum_probs=153.1
Q ss_pred eEEEEEcc-cCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCC----CCCCCCCcccEEE---EEEeC
Q 036416 70 VKAIRVYE-HGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPA----KMPFTPGMEAVGE---VVAVG 141 (256)
Q Consensus 70 ~~a~~~~~-~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----~~p~~lG~e~~G~---V~~vG 141 (256)
++.+.+.. .+.+.....++.++|.|.+++++|++.++++|+.|+.++.|..... .+|.+++.++.|+ +...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g 84 (347)
T KOG1198|consen 5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVG 84 (347)
T ss_pred cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccc
Confidence 34444444 4444555666889999999999999999999999999999987653 4675555554444 44455
Q ss_pred -CCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHc------CCCCCCEEEE
Q 036416 142 -PGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF------KVEPGHTVLI 214 (256)
Q Consensus 142 -~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~------~~~~g~~VlI 214 (256)
..+..+..||.+..... .|+|+||+++|...++++|+++++++||+++.++.|||.++...+ ++++|++|||
T Consensus 85 ~~~~~~~~~g~~~~~~~~-~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv 163 (347)
T KOG1198|consen 85 DDVVGGWVHGDAVVAFLS-SGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLV 163 (347)
T ss_pred cccccceEeeeEEeeccC-CCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEE
Confidence 33445777777665544 599999999999999999999999999999999999999999998 8999999999
Q ss_pred ecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCCC
Q 036416 215 QAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 215 ~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+||+|++|++++|+|+..|+..++++.++++.+++|++|||+
T Consensus 164 ~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~ 205 (347)
T KOG1198|consen 164 LGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADE 205 (347)
T ss_pred EeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcE
Confidence 999999999999999999976666666689999999999985
No 106
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=2.6e-26 Score=200.84 Aligned_cols=180 Identities=38% Similarity=0.494 Sum_probs=159.4
Q ss_pred EcccCCCCce--EEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 75 VYEHGDPEVL--KWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 75 ~~~~~~~~~l--~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
++..++++++ ++.+.+.|++.++||+|++.++++|+.|++...|..+. ...|..+|||++|+|+++|+++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~ 82 (319)
T cd08267 3 YTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKV 82 (319)
T ss_pred eCCCCChhhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCC
Confidence 4455666665 77888999999999999999999999999988776521 224678999999999999999999999
Q ss_pred CCEEEEeCC--CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416 150 GDIIAYAGG--AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ 227 (256)
Q Consensus 150 Gd~V~~~~~--~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~ 227 (256)
||+|++... ..|+|++|+.++.+.++++|+++++++++.+++.+.+||+++....++++|++|+|+|++|++|+++++
T Consensus 83 Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~ 162 (319)
T cd08267 83 GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQ 162 (319)
T ss_pred CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 999998752 358999999999999999999999999999999999999999888789999999999988999999999
Q ss_pred HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 228 WANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|+.+|++|++++.+ ++.++++++|++
T Consensus 163 la~~~g~~v~~~~~~-~~~~~~~~~g~~ 189 (319)
T cd08267 163 IAKALGAHVTGVCST-RNAELVRSLGAD 189 (319)
T ss_pred HHHHcCCEEEEEeCH-HHHHHHHHcCCC
Confidence 999999999999875 888899999974
No 107
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.95 E-value=5.1e-26 Score=198.92 Aligned_cols=185 Identities=37% Similarity=0.498 Sum_probs=166.2
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|+++.+...+.+..+.+++.+.|.+++++++|++.++++|+.|+....+.++. ..+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 67888887777777888887777789999999999999999999988775543 23578999999999999999999999
Q ss_pred CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416 149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228 (256)
Q Consensus 149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l 228 (256)
+||+|+++.. +|++++|+.++...++++|+++++.+++.++..+.++|+++.....+++|++|+|+|++|++|.+++++
T Consensus 81 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~ 159 (325)
T TIGR02824 81 VGDRVCALVA-GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQL 159 (325)
T ss_pred CCCEEEEccC-CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHH
Confidence 9999998743 389999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 229 ANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 229 a~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++.+|++|+++++++++.++++++|++
T Consensus 160 a~~~g~~v~~~~~~~~~~~~~~~~g~~ 186 (325)
T TIGR02824 160 AKAFGARVFTTAGSDEKCAACEALGAD 186 (325)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHcCCc
Confidence 999999999999999988888888864
No 108
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.95 E-value=3.6e-26 Score=205.03 Aligned_cols=181 Identities=26% Similarity=0.301 Sum_probs=149.8
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
|+++.+. .++.+++++.+.|.+.++||+||+.++++|++|++...+... ...+|.++|||++|+|+++|+++++
T Consensus 18 ~~~~~~~---~~~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 94 (364)
T PLN02702 18 NMAAWLV---GVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH 94 (364)
T ss_pred cceEEEe---cCCceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence 4444444 334588888888989999999999999999999998876321 1225778999999999999999999
Q ss_pred cCCCCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHH
Q 036416 147 RTVGDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFL 199 (256)
Q Consensus 147 ~~~Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~ 199 (256)
|++||+|++.. ..+|+|++|+.++...++++|+++++++++.. ..+.++|++
T Consensus 95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~ 173 (364)
T PLN02702 95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHA 173 (364)
T ss_pred CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHH
Confidence 99999998621 11489999999999999999999999988752 234457777
Q ss_pred HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCCC
Q 036416 200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+ ...++.+|++|+|+| +|++|++++++|+.+|++ |++++.+++|.++++++|+++
T Consensus 174 ~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 229 (364)
T PLN02702 174 C-RRANIGPETNVLVMG-AGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADE 229 (364)
T ss_pred H-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence 7 667899999999997 699999999999999995 777888888999999999863
No 109
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.95 E-value=3.7e-26 Score=203.30 Aligned_cols=177 Identities=33% Similarity=0.369 Sum_probs=151.6
Q ss_pred EEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCC-CCC--CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 73 IRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGV-YKP--AKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~--~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
+.+++. ..+.+++.+.|.+.++||+|++.++++|+.|++.+.+. ... ..+|.++|+|++|+|+++|++++++++
T Consensus 2 ~~~~~~---~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~ 78 (343)
T cd05285 2 AVLHGP---GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKV 78 (343)
T ss_pred ceEecC---CceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCC
Confidence 455633 45888999999999999999999999999999876432 111 235778999999999999999999999
Q ss_pred CCEEEEeC---------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHH
Q 036416 150 GDIIAYAG---------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRR 202 (256)
Q Consensus 150 Gd~V~~~~---------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~ 202 (256)
||+|++.. ...|+|++|++++.+.++++|+++++++++.+ ..+.+||+++ .
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~ 156 (343)
T cd05285 79 GDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-R 156 (343)
T ss_pred CCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-H
Confidence 99998621 12489999999999999999999999998876 5778899887 6
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.+++++|++|+|+| +|++|++++|+|+.+|++ |+++++++++.++++++|++
T Consensus 157 ~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~ 209 (343)
T cd05285 157 RAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGAT 209 (343)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCc
Confidence 78999999999987 699999999999999997 99999999999999999986
No 110
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.95 E-value=6.8e-26 Score=204.89 Aligned_cols=181 Identities=24% Similarity=0.183 Sum_probs=152.7
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC------C-CCCCCCCCCcccEEEEEEeCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY------K-PAKMPFTPGMEAVGEVVAVGP 142 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~~lG~e~~G~V~~vG~ 142 (256)
+...++... .+++++.|.|+++++||+|++.++++|++|++.+.+.. + ...+|.++|||++|+|+++|+
T Consensus 29 ~~~~~~~~~----~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 104 (384)
T cd08265 29 LGSKVWRYP----ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK 104 (384)
T ss_pred ceeEEEeCC----CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence 455555532 38999999999999999999999999999998876321 1 134678999999999999999
Q ss_pred CCCccCCCCEEEEeC--------------------------CCCcceeeEEEecCCCeEECCCC-------CCHHHHhhh
Q 036416 143 GLTGRTVGDIIAYAG--------------------------GAMGSYAEEQILPANKVVPVPSS-------IDPVIAASI 189 (256)
Q Consensus 143 ~v~~~~~Gd~V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~-------~~~~~aa~l 189 (256)
+++.+++||+|++.. ...|+|++|+.++...++++|+. ++++ ++++
T Consensus 105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~ 183 (384)
T cd08265 105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGAL 183 (384)
T ss_pred CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-Hhhh
Confidence 999999999998621 11589999999999999999986 3455 5567
Q ss_pred chhHHHHHHHHHHH-cCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 190 MLKGMTAQFLLRRC-FKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 190 ~~~~~ta~~~l~~~-~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
+..+.+||+++... +++++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.+.++++|+++
T Consensus 184 ~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~ 251 (384)
T cd08265 184 VEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADY 251 (384)
T ss_pred hhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCE
Confidence 78889999998665 6899999999996 69999999999999999 7999999988999999999853
No 111
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.95 E-value=6.5e-26 Score=201.07 Aligned_cols=173 Identities=31% Similarity=0.420 Sum_probs=149.2
Q ss_pred CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHh-CCCCC--CCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEe
Q 036416 80 DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRK-GVYKP--AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYA 156 (256)
Q Consensus 80 ~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~~--~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~ 156 (256)
+++.+.+++.+.|.++++||+||+.++++|++|++... |.... ..+|.++|+|++|+|+++|++++++++||+|++.
T Consensus 5 ~~~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~ 84 (339)
T cd08232 5 AAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVN 84 (339)
T ss_pred cCCceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEc
Confidence 34568999999999999999999999999999998764 32211 2357789999999999999999999999999872
Q ss_pred C-------------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC
Q 036416 157 G-------------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK 205 (256)
Q Consensus 157 ~-------------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~ 205 (256)
. ...|+|++|+.++.+.++++|+++++++++. +..+.++|+++.....
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~ 163 (339)
T cd08232 85 PSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGD 163 (339)
T ss_pred cCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCC
Confidence 1 1258999999999999999999999999875 5788899999877655
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+ +|++|||.| +|++|.+++|+|+.+|+ +|++++.++++.++++++|++
T Consensus 164 ~-~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~ 212 (339)
T cd08232 164 L-AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD 212 (339)
T ss_pred C-CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC
Confidence 6 999999987 69999999999999999 799999988888888999875
No 112
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.94 E-value=7.7e-26 Score=197.74 Aligned_cols=168 Identities=32% Similarity=0.383 Sum_probs=147.8
Q ss_pred CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhH-hCCCCC--CCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeC
Q 036416 81 PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYR-KGVYKP--AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG 157 (256)
Q Consensus 81 ~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~--~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 157 (256)
++.+++++++.|++.++||+|++.++++|+.|++.+ .|..+. +.+|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus 4 ~~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 83 (312)
T cd08269 4 PGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS 83 (312)
T ss_pred CCeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec
Confidence 456889999999999999999999999999999987 665432 22478999999999999999999999999999886
Q ss_pred CCCcceeeEEEecCCCeEECCCCCCHHHHhhhc-hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-
Q 036416 158 GAMGSYAEEQILPANKVVPVPSSIDPVIAASIM-LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT- 235 (256)
Q Consensus 158 ~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~-~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~- 235 (256)
. |+|++|+.++.+.++++|+++ ..+ +++ .++.++++++. .+++++|++|+|+| +|++|.+++|+|+.+|++
T Consensus 84 ~--g~~~~~~~v~~~~~~~lP~~~--~~~-~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~ 156 (312)
T cd08269 84 G--GAFAEYDLADADHAVPLPSLL--DGQ-AFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARR 156 (312)
T ss_pred C--CcceeeEEEchhheEECCCch--hhh-HHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence 5 899999999999999999998 232 333 77888998886 78899999999997 699999999999999998
Q ss_pred EEEEeCChhhHHHHHhCCCC
Q 036416 236 VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 236 Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|+++++++++.++++++|++
T Consensus 157 v~~~~~~~~~~~~~~~~g~~ 176 (312)
T cd08269 157 VIAIDRRPARLALARELGAT 176 (312)
T ss_pred EEEECCCHHHHHHHHHhCCc
Confidence 99999999999999999975
No 113
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.94 E-value=1.4e-25 Score=197.71 Aligned_cols=179 Identities=25% Similarity=0.301 Sum_probs=153.3
Q ss_pred EEEEEcccC----CCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC---CCCCCCCCcccEEEEEEeCCC
Q 036416 71 KAIRVYEHG----DPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP---AKMPFTPGMEAVGEVVAVGPG 143 (256)
Q Consensus 71 ~a~~~~~~~----~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~ 143 (256)
+++.++..+ .++.+++++.+.|.+.+++|+||+.++++|+.|.....+.... ...+.++|+|++|+|+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~ 82 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP 82 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence 566666554 5678999999999999999999999999999887655543211 113467899999999999964
Q ss_pred CCccCCCCEEEEeCCCCcceeeEEEecC-CCeEECCCCCC--HHHHhh-hchhHHHHHHHHHHHcCCCCCCEEEEecCCC
Q 036416 144 LTGRTVGDIIAYAGGAMGSYAEEQILPA-NKVVPVPSSID--PVIAAS-IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAG 219 (256)
Q Consensus 144 v~~~~~Gd~V~~~~~~~G~~a~~~~v~~-~~~~~ip~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g 219 (256)
++++||+|+++ ++|++|+.++. +.++++|++++ +.++++ +++.+.|||+++...+.+.+|++|+|+|++|
T Consensus 83 --~~~~Gd~V~~~----~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g 156 (329)
T cd05288 83 --DFKVGDLVSGF----LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAG 156 (329)
T ss_pred --CCCCCCEEecc----cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcc
Confidence 79999999875 47999999999 99999999995 555555 8899999999998878899999999999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh-CCCC
Q 036416 220 GVGSLLCQWANALGATVIGTVSTKEKAAQAKD-DGCH 255 (256)
Q Consensus 220 ~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~-~Ga~ 255 (256)
++|++++|+|+.+|++|+++++++++.+++++ +|++
T Consensus 157 ~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~ 193 (329)
T cd05288 157 AVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFD 193 (329)
T ss_pred hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999988 9975
No 114
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.94 E-value=1.7e-25 Score=198.86 Aligned_cols=181 Identities=29% Similarity=0.316 Sum_probs=153.1
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCC---CCCCCCCCCCcccEEEEEEeCCCCCc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVY---KPAKMPFTPGMEAVGEVVAVGPGLTG 146 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~~lG~e~~G~V~~vG~~v~~ 146 (256)
||++.++.++. .+.+.+.+.|.|.++|++||+.++++|+.|++++.+.. .....|.++|+|++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~ 78 (341)
T cd05281 1 MKAIVKTKAGP--GAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTR 78 (341)
T ss_pred CcceEEecCCC--ceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCC
Confidence 68888887654 48888999999999999999999999999998765432 12235678999999999999999999
Q ss_pred cCCCCEEEEeCC--------------------------CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHH
Q 036416 147 RTVGDIIAYAGG--------------------------AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLL 200 (256)
Q Consensus 147 ~~~Gd~V~~~~~--------------------------~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l 200 (256)
+++||+|++... ..|+|++|++++.+.++++|++++.+.+ +++..+.++++++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~ 157 (341)
T cd05281 79 VKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTV 157 (341)
T ss_pred CCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHH
Confidence 999999988511 2489999999999999999999998544 5677888888876
Q ss_pred HHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhCCCCC
Q 036416 201 RRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
. ...++|++|+|+| +|++|++++|+|+.+|+ +|++++.+++|.++++++|+++
T Consensus 158 ~--~~~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 211 (341)
T cd05281 158 L--AGDVSGKSVLITG-CGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV 211 (341)
T ss_pred H--hcCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce
Confidence 4 3568999999987 69999999999999999 7999988889999999999753
No 115
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.94 E-value=1.3e-25 Score=194.74 Aligned_cols=164 Identities=34% Similarity=0.502 Sum_probs=150.5
Q ss_pred CCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeC-CCCcceeeEEE
Q 036416 91 IGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG-GAMGSYAEEQI 168 (256)
Q Consensus 91 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~-~~~G~~a~~~~ 168 (256)
.|++.+++|+|++.++++|+.|+....|.++. ..+|.++|+|++|+|+++|+++.++++||+|+++. ...|+|++|+.
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~ 81 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVT 81 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEE
Confidence 57789999999999999999999998886543 34688999999999999999999999999999875 34689999999
Q ss_pred ecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416 169 LPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248 (256)
Q Consensus 169 v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~ 248 (256)
++.+.++++|+++++++++.++..+.+||+++. ..++++|++|+|++++|++|++++|+|+.+|++|++++.++++.++
T Consensus 82 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 160 (303)
T cd08251 82 VPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEY 160 (303)
T ss_pred ccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 999999999999999999999999999999985 6799999999999999999999999999999999999999999999
Q ss_pred HHhCCCC
Q 036416 249 AKDDGCH 255 (256)
Q Consensus 249 ~~~~Ga~ 255 (256)
++++|++
T Consensus 161 ~~~~g~~ 167 (303)
T cd08251 161 LKQLGVP 167 (303)
T ss_pred HHHcCCC
Confidence 9999975
No 116
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.94 E-value=3.7e-25 Score=193.11 Aligned_cols=184 Identities=43% Similarity=0.640 Sum_probs=163.7
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCCC-CCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCcc
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEPG-EGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGR 147 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~ 147 (256)
|+++++..++.+..+.+.+.+ |.+. +++++|++.++++|+.|++...|.+.. ...|.++|||++|+|+.+|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 688888877777778888877 7665 599999999999999999988776532 2346689999999999999999999
Q ss_pred CCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHH
Q 036416 148 TVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQ 227 (256)
Q Consensus 148 ~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~ 227 (256)
++||+|+++.. .|++++|+.++.+.++++|+++++.+++.+...+.+||+++....++++|++|+|+|++|++|+++++
T Consensus 80 ~~G~~V~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~ 158 (323)
T cd08241 80 KVGDRVVALTG-QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQ 158 (323)
T ss_pred CCCCEEEEecC-CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHH
Confidence 99999999861 38999999999999999999999999998999999999998877889999999999988999999999
Q ss_pred HHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 228 WANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 228 la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|+..|++|+.++.++++.++++++|++
T Consensus 159 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~ 186 (323)
T cd08241 159 LAKALGARVIAAASSEEKLALARALGAD 186 (323)
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHHcCCc
Confidence 9999999999999999999999988874
No 117
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.94 E-value=3e-25 Score=189.40 Aligned_cols=157 Identities=41% Similarity=0.556 Sum_probs=143.4
Q ss_pred eEEEEEeEEeeChhhhHhHhCCCC-CCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCC------------------
Q 036416 98 EIRVRNKAIGLNFIDVYYRKGVYK-PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGG------------------ 158 (256)
Q Consensus 98 eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~------------------ 158 (256)
||+|++.++++|+.|++.+.|..+ ...+|.++|||++|+|+++|++++.+++||+|++...
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGI 80 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCE
Confidence 689999999999999999988765 3446789999999999999999999999999998762
Q ss_pred ----CCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC
Q 036416 159 ----AMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA 234 (256)
Q Consensus 159 ----~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga 234 (256)
..|+|++|+.++.+.++++|+++++++++.++..+.+||+++.....+++|++|+|+|+.+ +|++++++++..|+
T Consensus 81 ~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~ 159 (271)
T cd05188 81 LGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGA 159 (271)
T ss_pred eccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCC
Confidence 2589999999999999999999999999999999999999998887779999999999755 99999999999999
Q ss_pred eEEEEeCChhhHHHHHhCCCC
Q 036416 235 TVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 235 ~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+|++++.++++.++++++|++
T Consensus 160 ~v~~~~~~~~~~~~~~~~g~~ 180 (271)
T cd05188 160 RVIVTDRSDEKLELAKELGAD 180 (271)
T ss_pred eEEEEcCCHHHHHHHHHhCCc
Confidence 999999999999999988865
No 118
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.94 E-value=5.3e-25 Score=195.63 Aligned_cols=174 Identities=30% Similarity=0.362 Sum_probs=146.9
Q ss_pred cccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCC---CCCCCCCCCcccEEEEEEeCCCCCccCCCCE
Q 036416 76 YEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYK---PAKMPFTPGMEAVGEVVAVGPGLTGRTVGDI 152 (256)
Q Consensus 76 ~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~ 152 (256)
++++.+ +++++.|.|.|+++||+||+.++++|+.|+.++.+... ...+|.++|+|++|+|+++|++++++++||+
T Consensus 5 ~~~~~~--~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~ 82 (340)
T TIGR00692 5 TKPGYG--AELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDY 82 (340)
T ss_pred ccCCCC--cEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCE
Confidence 344444 78889999999999999999999999999998765421 1235678999999999999999999999999
Q ss_pred EEEeC--------------------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCC
Q 036416 153 IAYAG--------------------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKV 206 (256)
Q Consensus 153 V~~~~--------------------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~ 206 (256)
|++.. ...|+|++|++++.+.++++|++++++++ +++..+.+|++++ ....
T Consensus 83 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~ 159 (340)
T TIGR00692 83 VSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGP 159 (340)
T ss_pred EEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccC
Confidence 98731 13589999999999999999999998655 5678888898876 3467
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
++|++|+|.| +|++|.+++|+|+.+|++ |++++.++++.+.++++|++
T Consensus 160 ~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 160 ISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT 208 (340)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 8999999987 699999999999999996 88888888889999999975
No 119
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=2.4e-24 Score=189.84 Aligned_cols=183 Identities=37% Similarity=0.590 Sum_probs=156.9
Q ss_pred EEEEEcccCCCCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCCcccEEEEEEeCCCCCccCC
Q 036416 71 KAIRVYEHGDPEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPGMEAVGEVVAVGPGLTGRTV 149 (256)
Q Consensus 71 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~ 149 (256)
|++.+...+.++.+.+.+.+.|.+.+++|+|++.++++|+.|+....|.++. +..|.++|||++|+|+.+|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4566666666667888888888889999999999999999999988876542 345778999999999999999999999
Q ss_pred CCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHH
Q 036416 150 GDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWA 229 (256)
Q Consensus 150 Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la 229 (256)
||+|+++.. .|+|++|+.++.+.++++|+++++++++.+++.+.++|+++....++++|++|+|+|++|++|++++++|
T Consensus 81 G~~V~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a 159 (337)
T cd08275 81 GDRVMGLTR-FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLC 159 (337)
T ss_pred CCEEEEecC-CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHH
Confidence 999998753 3899999999999999999999999999999999999999888889999999999998899999999999
Q ss_pred HHc-CCeEEEEeCChhhHHHHHhCCCC
Q 036416 230 NAL-GATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 230 ~~~-ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
+.+ +..++... .+++.++++++|++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~g~~ 185 (337)
T cd08275 160 KTVPNVTVVGTA-SASKHEALKENGVT 185 (337)
T ss_pred HHccCcEEEEeC-CHHHHHHHHHcCCc
Confidence 998 43333332 35678888888874
No 120
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.93 E-value=2.5e-24 Score=184.78 Aligned_cols=153 Identities=37% Similarity=0.489 Sum_probs=142.6
Q ss_pred CeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEE
Q 036416 97 GEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVP 176 (256)
Q Consensus 97 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ 176 (256)
+||+||+.++++|+.|++...|..+ .+|.++|||++|+|+++|+++..+++||+|++... |+|++|+.++.+.+++
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~--g~~~~~~~~~~~~~~~ 76 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP--GAFATHVRVDARLVVK 76 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec--CcccceEEechhheEe
Confidence 5899999999999999999888652 35789999999999999999999999999998864 8999999999999999
Q ss_pred CCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416 177 VPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253 (256)
Q Consensus 177 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G 253 (256)
+|+++++.+++.+++.+.++|.++....++++|++|+|+|++|++|++++|+|+.+|++|++++.++++.++++++|
T Consensus 77 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~ 153 (293)
T cd05195 77 IPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELG 153 (293)
T ss_pred CCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 99999999999999999999999888889999999999998999999999999999999999999999999998887
No 121
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.92 E-value=4.8e-24 Score=180.41 Aligned_cols=171 Identities=27% Similarity=0.340 Sum_probs=141.6
Q ss_pred CCceEEEEeeCCCCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeC--CCCCccCCCCEEEEeCC
Q 036416 81 PEVLKWEDVEIGEPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVG--PGLTGRTVGDIIAYAGG 158 (256)
Q Consensus 81 ~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG--~~v~~~~~Gd~V~~~~~ 158 (256)
++++++++.++|+|+++|||||+.|.+++| ....+....++-..|+-+|...+|-++... ++...|++||.|..+.
T Consensus 24 ~d~F~lee~~vp~p~~GqvLl~~~ylS~DP-ymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~- 101 (340)
T COG2130 24 PDDFRLEEVDVPEPGEGQVLLRTLYLSLDP-YMRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS- 101 (340)
T ss_pred CCCceeEeccCCCCCcCceEEEEEEeccCH-HHeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc-
Confidence 466999999999999999999999999977 222222333333457778876666554433 5677899999998875
Q ss_pred CCcceeeEEEecCCCeEECCCCCC--HHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeE
Q 036416 159 AMGSYAEEQILPANKVVPVPSSID--PVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATV 236 (256)
Q Consensus 159 ~~G~~a~~~~v~~~~~~~ip~~~~--~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~V 236 (256)
+|++|..++...+.|+.+..- ......+.++..|||.+|.+.++.++|++|+|.+|+|++|..+.|+||..|++|
T Consensus 102 ---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rV 178 (340)
T COG2130 102 ---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRV 178 (340)
T ss_pred ---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeE
Confidence 699999999999999975532 233456789999999999999999999999999999999999999999999999
Q ss_pred EEEeCChhhHHHHHh-CCCCC
Q 036416 237 IGTVSTKEKAAQAKD-DGCHH 256 (256)
Q Consensus 237 i~~~~~~~~~~~~~~-~Ga~~ 256 (256)
++++.+++|++++++ +|+|.
T Consensus 179 VGiaGg~eK~~~l~~~lGfD~ 199 (340)
T COG2130 179 VGIAGGAEKCDFLTEELGFDA 199 (340)
T ss_pred EEecCCHHHHHHHHHhcCCce
Confidence 999999999999997 89874
No 122
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.92 E-value=1.6e-23 Score=179.66 Aligned_cols=149 Identities=38% Similarity=0.493 Sum_probs=139.6
Q ss_pred EEEeEEeeChhhhHhHhCCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCC
Q 036416 101 VRNKAIGLNFIDVYYRKGVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSS 180 (256)
Q Consensus 101 Vkv~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~ 180 (256)
||+.++++|+.|++...|.++ .|.++|||++|+|+++|++++.+++||+|++... |+|++|+.++.+.++++|++
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~--g~~~~~~~~~~~~~~~~p~~ 76 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP--GSFATYVRTDARLVVPIPDG 76 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC--CceeeEEEccHHHeEECCCC
Confidence 889999999999999887654 3578999999999999999999999999998865 89999999999999999999
Q ss_pred CCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 181 IDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
+++++++.+++.+.++|.++.....+.+|++|+|+|++|++|++++++|+.+|++|+++++++++.++++++|+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~ 150 (288)
T smart00829 77 LSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGI 150 (288)
T ss_pred CCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence 99999999999999999998777899999999999999999999999999999999999999999999999997
No 123
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.91 E-value=1.4e-23 Score=182.07 Aligned_cols=127 Identities=31% Similarity=0.378 Sum_probs=113.6
Q ss_pred CCCcccEEEEEEeCCCCC------ccCCCCEEEEeCC---------------------------------CCcceeeEEE
Q 036416 128 TPGMEAVGEVVAVGPGLT------GRTVGDIIAYAGG---------------------------------AMGSYAEEQI 168 (256)
Q Consensus 128 ~lG~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~---------------------------------~~G~~a~~~~ 168 (256)
++|||++|+|+++|++|+ ++++||||++... .+|+|+||++
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~ 80 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH 80 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence 589999999999999999 8999999975310 2489999999
Q ss_pred ecCC-CeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhH
Q 036416 169 LPAN-KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKA 246 (256)
Q Consensus 169 v~~~-~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~ 246 (256)
+|.. .++++|+++++++++.+++.+.|+|+++... ...+|++|||+| +|++|++++|+|+.+|++ |++++.+++|+
T Consensus 81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~-~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~ 158 (280)
T TIGR03366 81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAA-GDLKGRRVLVVG-AGMLGLTAAAAAAAAGAARVVAADPSPDRR 158 (280)
T ss_pred ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhc-cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 9997 6999999999999999999999999998654 567999999998 599999999999999996 89998899999
Q ss_pred HHHHhCCCCC
Q 036416 247 AQAKDDGCHH 256 (256)
Q Consensus 247 ~~~~~~Ga~~ 256 (256)
++++++|+++
T Consensus 159 ~~a~~~Ga~~ 168 (280)
T TIGR03366 159 ELALSFGATA 168 (280)
T ss_pred HHHHHcCCcE
Confidence 9999999863
No 124
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.84 E-value=6.9e-20 Score=157.92 Aligned_cols=128 Identities=36% Similarity=0.477 Sum_probs=116.9
Q ss_pred CCCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHH
Q 036416 118 GVYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQ 197 (256)
Q Consensus 118 g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~ 197 (256)
|..|.+ +|.++|||++|+|+++|++++++++||+|+++. .|++|+.++.+.++++|+++++++++.+ ..+.+||
T Consensus 14 ~~~~~~-~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~----~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~ 87 (277)
T cd08255 14 GTEKLP-LPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG----PHAERVVVPANLLVPLPDGLPPERAALT-ALAATAL 87 (277)
T ss_pred cCccCc-CCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHH
Confidence 444444 789999999999999999999999999999864 5999999999999999999999999888 7899999
Q ss_pred HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHHHhCC
Q 036416 198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQAKDDG 253 (256)
Q Consensus 198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~~~~G 253 (256)
+++. .+++++|++++|+| +|++|++++++|+.+|++ |+++++++++.++++++|
T Consensus 88 ~~~~-~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g 142 (277)
T cd08255 88 NGVR-DAEPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG 142 (277)
T ss_pred HHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC
Confidence 9985 57899999999997 699999999999999998 999999999999999998
No 125
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.80 E-value=6.3e-18 Score=143.02 Aligned_cols=163 Identities=24% Similarity=0.320 Sum_probs=125.0
Q ss_pred EeeCC-CCCCCeEEEEEeEEeeChhhhHhHhCCCCC-CCCCCCCC----cccEEEEEEeCCCCCccCCCCEEEEeCCCCc
Q 036416 88 DVEIG-EPGEGEIRVRNKAIGLNFIDVYYRKGVYKP-AKMPFTPG----MEAVGEVVAVGPGLTGRTVGDIIAYAGGAMG 161 (256)
Q Consensus 88 ~~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~~lG----~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~G 161 (256)
+.+.+ ++++++||||..|.+..|--...+.-..+. -..|+.+| ..++|.|++ ++-+++++||.|+++.
T Consensus 28 ~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~---- 101 (343)
T KOG1196|consen 28 TVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV---- 101 (343)
T ss_pred eecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec----
Confidence 34433 568999999999999855432222211111 11233343 378999999 4667899999999987
Q ss_pred ceeeEEEecCCC--eEECC--CCCCHHHH-hhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeE
Q 036416 162 SYAEEQILPANK--VVPVP--SSIDPVIA-ASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATV 236 (256)
Q Consensus 162 ~~a~~~~v~~~~--~~~ip--~~~~~~~a-a~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~V 236 (256)
+|.||.+++... .++++ .+.++... ..+.++.+|||.++.+.+..++|++|+|.||+|++|+++.|+|+.+||+|
T Consensus 102 gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~V 181 (343)
T KOG1196|consen 102 GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYV 181 (343)
T ss_pred cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEE
Confidence 599999998753 44443 34444443 45678999999999999999999999999999999999999999999999
Q ss_pred EEEeCChhhHHHHH-hCCCCC
Q 036416 237 IGTVSTKEKAAQAK-DDGCHH 256 (256)
Q Consensus 237 i~~~~~~~~~~~~~-~~Ga~~ 256 (256)
++++.+++|.++++ +||.|+
T Consensus 182 VGsaGS~EKv~ll~~~~G~d~ 202 (343)
T KOG1196|consen 182 VGSAGSKEKVDLLKTKFGFDD 202 (343)
T ss_pred EEecCChhhhhhhHhccCCcc
Confidence 99999999999987 578874
No 126
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.78 E-value=8.3e-19 Score=131.08 Aligned_cols=82 Identities=43% Similarity=0.667 Sum_probs=70.4
Q ss_pred CCeEEEEEeEEeeChhhhHhHhC-CCCCCCCCCCCCcccEEEEEEeCCCCCccCCCCEEEEeC-----------------
Q 036416 96 EGEIRVRNKAIGLNFIDVYYRKG-VYKPAKMPFTPGMEAVGEVVAVGPGLTGRTVGDIIAYAG----------------- 157 (256)
Q Consensus 96 ~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~----------------- 157 (256)
|+|||||++++|||++|++++.| ......+|.++|||++|+|+++|+++++|++||+|++..
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 68999999999999999999999 345567899999999999999999999999999998743
Q ss_pred ---------CCCcceeeEEEecCCCeEEC
Q 036416 158 ---------GAMGSYAEEQILPANKVVPV 177 (256)
Q Consensus 158 ---------~~~G~~a~~~~v~~~~~~~i 177 (256)
..+|+|+||+.+|.+.++++
T Consensus 81 c~~~~~~g~~~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEVLGLGLDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred CCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence 12599999999999999875
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.77 E-value=6.5e-19 Score=168.98 Aligned_cols=162 Identities=27% Similarity=0.293 Sum_probs=144.1
Q ss_pred CCCCceEEEEeeCC---CCCCCeEEEEEeEEeeChhhhHhHhCCCCCCCCC-------CCCCcccEEEEEEeCCCCCccC
Q 036416 79 GDPEVLKWEDVEIG---EPGEGEIRVRNKAIGLNFIDVYYRKGVYKPAKMP-------FTPGMEAVGEVVAVGPGLTGRT 148 (256)
Q Consensus 79 ~~~~~l~~~~~~~p---~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p-------~~lG~e~~G~V~~vG~~v~~~~ 148 (256)
|+...++|.+-|.. +..++.=+..|.|+.||+.|+....|+.+....| .++|.|++|+ .+
T Consensus 1424 GDlsSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~ 1493 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DA 1493 (2376)
T ss_pred ccccceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cC
Confidence 55667888887765 3467888899999999999999999998765444 5778899887 34
Q ss_pred CCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHH
Q 036416 149 VGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQW 228 (256)
Q Consensus 149 ~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~l 228 (256)
-|.||.++.+. -++++.+.++.+.++.+|.++.+++|++.|+.+.||||+|..++..++|+++|||+++|++|+++|.+
T Consensus 1494 ~GrRvM~mvpA-ksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIai 1572 (2376)
T KOG1202|consen 1494 SGRRVMGMVPA-KSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAI 1572 (2376)
T ss_pred CCcEEEEeeeh-hhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHH
Confidence 59999998873 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEeCChhhHHHHHh
Q 036416 229 ANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 229 a~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
|-++|++|+.++.+.+|++++++
T Consensus 1573 ALa~G~~VFTTVGSaEKRefL~~ 1595 (2376)
T KOG1202|consen 1573 ALAHGCTVFTTVGSAEKREFLLK 1595 (2376)
T ss_pred HHHcCCEEEEecCcHHHHHHHHH
Confidence 99999999999999999998864
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.37 E-value=3.5e-06 Score=78.58 Aligned_cols=49 Identities=31% Similarity=0.272 Sum_probs=46.6
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
..+|++|+|+| +|.+|+++++.|+.+||+|++++.+++|++.++++|++
T Consensus 162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 46899999999 69999999999999999999999999999999999986
No 129
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.76 E-value=0.0001 Score=67.22 Aligned_cols=58 Identities=26% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 197 QFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 197 ~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
|.++.+..+ .-+|++|+|.| .|.+|+.+++.++..|++|++++.++.|.+.++++|++
T Consensus 189 ~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~ 247 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE 247 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE
Confidence 444444334 46899999999 69999999999999999999999999999999999974
No 130
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.47 E-value=0.00048 Score=64.40 Aligned_cols=48 Identities=31% Similarity=0.295 Sum_probs=44.8
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.++++|+|+| +|.+|++++++|+.+|++|++++.++++++.++++|++
T Consensus 162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~ 209 (511)
T TIGR00561 162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAE 209 (511)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4679999999 69999999999999999999999999999999999975
No 131
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.19 E-value=0.0017 Score=55.39 Aligned_cols=93 Identities=22% Similarity=0.225 Sum_probs=64.2
Q ss_pred ccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHc-CCCCCCEEEEecCCChHHHH
Q 036416 146 GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCF-KVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 146 ~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~ga~g~vG~~ 224 (256)
.+++||++++.+. |.+|.. +...++.+++++++..+. ...|.. ++.... .+.++++||-.| +|. |..
T Consensus 66 p~~~g~~~~i~p~----~~~~~~-~~~~~i~i~p~~afgtg~----h~tt~~-~l~~l~~~~~~~~~VLDiG-cGs-G~l 133 (250)
T PRK00517 66 PIRIGDRLWIVPS----WEDPPD-PDEINIELDPGMAFGTGT----HPTTRL-CLEALEKLVLPGKTVLDVG-CGS-GIL 133 (250)
T ss_pred CEEEcCCEEEECC----CcCCCC-CCeEEEEECCCCccCCCC----CHHHHH-HHHHHHhhcCCCCEEEEeC-CcH-HHH
Confidence 3678999887764 566644 667789999998877643 222222 222211 257899999999 676 988
Q ss_pred HHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416 225 LCQWANALGA-TVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 225 ai~la~~~ga-~Vi~~~~~~~~~~~~~~ 251 (256)
++.+++ .|+ +|++++.++...+.+++
T Consensus 134 ~i~~~~-~g~~~v~giDis~~~l~~A~~ 160 (250)
T PRK00517 134 AIAAAK-LGAKKVLAVDIDPQAVEAARE 160 (250)
T ss_pred HHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 876555 677 59999999888777654
No 132
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.15 E-value=0.0019 Score=59.26 Aligned_cols=60 Identities=32% Similarity=0.266 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 194 MTAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 194 ~ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
..+|.++....++. .|++|+|.| .|.+|..+++.++.+|++|++++.++.|...+...|+
T Consensus 196 ~s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~ 256 (425)
T PRK05476 196 ESLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGF 256 (425)
T ss_pred hhhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC
Confidence 34566665543544 899999999 6999999999999999999999998888766666665
No 133
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.06 E-value=0.0046 Score=54.19 Aligned_cols=47 Identities=28% Similarity=0.328 Sum_probs=43.0
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.|.+|+|+| .|.+|+.+++.++.+|++|+++++++++.+.++++|++
T Consensus 151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~ 197 (296)
T PRK08306 151 HGSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS 197 (296)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe
Confidence 689999999 69999999999999999999999998888888888864
No 134
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.98 E-value=0.0033 Score=57.29 Aligned_cols=58 Identities=28% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHHHHHcC-CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 196 AQFLLRRCFK-VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 196 a~~~l~~~~~-~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
++.++.+..+ .-.|++|+|.| .|.+|+.+++.++..|++|++++.++.+...++..|+
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~ 239 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF 239 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC
Confidence 3444444333 36899999999 7999999999999999999999988888777777775
No 135
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.72 E-value=0.0038 Score=59.61 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=42.5
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC---------------------hhhHHHHHhCCCC
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST---------------------KEKAAQAKDDGCH 255 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~---------------------~~~~~~~~~~Ga~ 255 (256)
..++|++|+|+| +|+.|+.+++.++..|++|++++.. +.+++.++++|++
T Consensus 133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~ 203 (564)
T PRK12771 133 APDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVE 203 (564)
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCE
Confidence 367899999999 5999999999999999999998842 4567788889875
No 136
>PLN02494 adenosylhomocysteinase
Probab=96.59 E-value=0.0085 Score=55.43 Aligned_cols=57 Identities=32% Similarity=0.184 Sum_probs=46.0
Q ss_pred HHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 197 QFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 197 ~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
+.++.+..++ -.|++|+|.| .|.+|..+++.++..|++|++++.++.+...+...|+
T Consensus 241 ~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~ 298 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGY 298 (477)
T ss_pred HHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC
Confidence 4444444343 6799999999 7999999999999999999999998877667776665
No 137
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.45 E-value=0.0036 Score=55.26 Aligned_cols=80 Identities=24% Similarity=0.190 Sum_probs=56.4
Q ss_pred CeEECCCCCCHHHHhhhchhHHHHHHHHHHHcC---CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhH-H
Q 036416 173 KVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFK---VEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKA-A 247 (256)
Q Consensus 173 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~-~ 247 (256)
..+++|+.+..+.++... +...++.++..... --+|++|+|.| +|.+|..+++.++..|+ +|+++.++++|. +
T Consensus 140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 456667777776665432 33444444433222 14789999999 59999999999998876 788899987765 6
Q ss_pred HHHhCCC
Q 036416 248 QAKDDGC 254 (256)
Q Consensus 248 ~~~~~Ga 254 (256)
+++++|+
T Consensus 218 la~~~g~ 224 (311)
T cd05213 218 LAKELGG 224 (311)
T ss_pred HHHHcCC
Confidence 7778886
No 138
>PRK08324 short chain dehydrogenase; Validated
Probab=96.39 E-value=0.0071 Score=59.08 Aligned_cols=78 Identities=22% Similarity=0.177 Sum_probs=57.9
Q ss_pred cceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q 036416 161 GSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV 240 (256)
Q Consensus 161 G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~ 240 (256)
.++++|..+++..++.+ +.++.+++..-... ..+.-+|+++||.||+|++|..+++.+...|++|++++
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~ 453 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLAD 453 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence 46678888887777776 66677766411000 11234689999999999999999999999999999999
Q ss_pred CChhhHHHH
Q 036416 241 STKEKAAQA 249 (256)
Q Consensus 241 ~~~~~~~~~ 249 (256)
+++++.+.+
T Consensus 454 r~~~~~~~~ 462 (681)
T PRK08324 454 LDEEAAEAA 462 (681)
T ss_pred CCHHHHHHH
Confidence 988776544
No 139
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.26 E-value=0.044 Score=50.90 Aligned_cols=48 Identities=31% Similarity=0.291 Sum_probs=40.4
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
.-.|++|+|.| .|.+|..+++.++..|++|++++.++.+...+...|+
T Consensus 251 ~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~ 298 (476)
T PTZ00075 251 MIAGKTVVVCG-YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY 298 (476)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc
Confidence 45799999999 7999999999999999999999887766655555565
No 140
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.15 E-value=0.02 Score=44.07 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=37.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhhHHHH-HhC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTKEKAAQA-KDD 252 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~~~~~~~-~~~ 252 (256)
.+.+++|.| +|+.|.+++..+...|++ |+++.++.+|.+.+ +++
T Consensus 11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 589999999 599999999999999995 99999998887654 444
No 141
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.15 E-value=0.035 Score=45.28 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=35.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
.+.+++|.|++|++|..++..+...|++|+.+.++.++.+.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l 68 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKA 68 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 578999999899999998888888899999999987776543
No 142
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.03 E-value=0.017 Score=51.08 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
+.|.+++|.||++++|...+......|++|+.+++++++.+.+
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV 93 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 3589999999999999998888878899999999998876544
No 143
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.021 Score=49.75 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=36.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
.+.+++|.||+|++|...++.+...|++|++++++.++.+.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 357899999999999999998888999999999987765443
No 144
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.96 E-value=0.048 Score=47.59 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=40.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
.|++|+|.| .|.+|..++..++..|++|+++++++++.+.+.++|+
T Consensus 150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~ 195 (287)
T TIGR02853 150 HGSNVMVLG-FGRTGMTIARTFSALGARVFVGARSSADLARITEMGL 195 (287)
T ss_pred CCCEEEEEc-ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCC
Confidence 578999999 6999999999999999999999999887776666664
No 145
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.92 E-value=0.031 Score=44.64 Aligned_cols=45 Identities=29% Similarity=0.347 Sum_probs=38.4
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
..+|+|.| +|.+|.-|+++++.+|++|+..+..+++.+..+..++
T Consensus 20 p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~ 64 (168)
T PF01262_consen 20 PAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA 64 (168)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT
T ss_pred CeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC
Confidence 36799999 6999999999999999999999999888888777664
No 146
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.024 Score=49.89 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=35.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~ 247 (256)
.|.+++|.||++++|..++..+...|++|+.++++.++.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~ 52 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGE 52 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4789999999999999999988889999999999877654
No 147
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.90 E-value=0.026 Score=51.95 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=75.0
Q ss_pred CCCcccEEEEEEeCCCCCccCCCCEEEEeC-----------------CCCcceeeEEEecCCCeEECCCCCCHHHHhhhc
Q 036416 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYAG-----------------GAMGSYAEEQILPANKVVPVPSSIDPVIAASIM 190 (256)
Q Consensus 128 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----------------~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~ 190 (256)
.-|+|+++.+.+|++++++.-+|+.-+ ++ ..++.|++.+.+ |+.+..+.+. ..
T Consensus 91 ~~g~ea~~hl~~V~~GldS~V~GE~qI-lgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~--------~k~v~~~t~i-~~ 160 (423)
T PRK00045 91 HEGEEAVRHLFRVASGLDSMVLGEPQI-LGQVKDAYALAQEAGTVGTILNRLFQKAFSV--------AKRVRTETGI-GA 160 (423)
T ss_pred cCCHHHHHHHHHHHhhhhhhhcCChHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHH--------HhhHhhhcCC-CC
Confidence 459999999999999998876776543 11 002333333333 3333222221 11
Q ss_pred hhHHHHHHHHHHHcC---CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCCC
Q 036416 191 LKGMTAQFLLRRCFK---VEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDGC 254 (256)
Q Consensus 191 ~~~~ta~~~l~~~~~---~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~Ga 254 (256)
.+...++.++..... -.+|++|+|+| +|.+|.++++.++..|+ +|+++.+++++.+ +++++|+
T Consensus 161 ~~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~ 228 (423)
T PRK00045 161 GAVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG 228 (423)
T ss_pred CCcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence 123334444433221 25789999999 69999999999999998 7999999988855 6777774
No 148
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.90 E-value=0.024 Score=53.83 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=40.4
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~ 248 (256)
..+.+.|++|||.||+|++|..+++.+...|++|++++++.++.+.
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~ 119 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAES 119 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 3467799999999999999999999998899999999998877653
No 149
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.026 Score=47.93 Aligned_cols=43 Identities=33% Similarity=0.438 Sum_probs=36.6
Q ss_pred CCCCCEEEEecCCC-hHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416 206 VEPGHTVLIQAAAG-GVGSLLCQWANALGATVIGTVSTKEKAAQ 248 (256)
Q Consensus 206 ~~~g~~VlI~ga~g-~vG~~ai~la~~~ga~Vi~~~~~~~~~~~ 248 (256)
+..+++++|.||+| ++|.++++.+...|++|+++++++++.+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~ 57 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGE 57 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 44678999999986 89999999999999999999988766543
No 150
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.81 E-value=0.05 Score=44.86 Aligned_cols=46 Identities=33% Similarity=0.316 Sum_probs=39.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGC 254 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga 254 (256)
.|.+|+|+| .|.+|..+++.+...|++|++++.++++.+.++ .+|+
T Consensus 27 ~gk~v~I~G-~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~ 73 (200)
T cd01075 27 EGKTVAVQG-LGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGA 73 (200)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence 678999999 699999999999999999999999888776654 3454
No 151
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.79 E-value=0.031 Score=45.11 Aligned_cols=46 Identities=28% Similarity=0.352 Sum_probs=37.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G 253 (256)
-.|.+|.|+| .|.+|..+++.++..|++|++.++.........++|
T Consensus 34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred cCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence 3689999999 799999999999999999999999876554344444
No 152
>PRK04148 hypothetical protein; Provisional
Probab=95.75 E-value=0.038 Score=42.49 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=38.9
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
...++.++++.| +| .|...+..+...|.+|+++|.+++..+.+++.|.
T Consensus 13 ~~~~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~ 60 (134)
T PRK04148 13 EKGKNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGL 60 (134)
T ss_pred ccccCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC
Confidence 334678899999 68 8875565666789999999999999998888775
No 153
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.73 E-value=0.027 Score=48.44 Aligned_cols=46 Identities=37% Similarity=0.438 Sum_probs=39.8
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHHh
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~~ 251 (256)
+.+++|++||.+| +|+ |..++++++..|. +|++++.+++.++.+++
T Consensus 73 ~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 73 AELKPGETVLDLG-SGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred ccCCCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 5788999999999 677 9988899988775 69999999998888875
No 154
>PRK06196 oxidoreductase; Provisional
Probab=95.67 E-value=0.034 Score=48.86 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=35.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~ 248 (256)
.|.+++|.||+|++|..++......|++|+++++++++.+.
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~ 65 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVARE 65 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46899999999999999999888899999999998776543
No 155
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.035 Score=46.80 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=36.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
.+.++||.||+|++|..+++.+...|++|+.++++++..+...
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~ 56 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAA 56 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4679999999999999999988889999999998866544443
No 156
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.039 Score=48.20 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~ 247 (256)
.|.+|+|.||+|++|..+++.....|++|++++++.++.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~ 54 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK 54 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5789999999999999999988888999999998876643
No 157
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.50 E-value=0.036 Score=50.12 Aligned_cols=45 Identities=31% Similarity=0.262 Sum_probs=37.8
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH-hCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK-DDGC 254 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~-~~Ga 254 (256)
+.+|+|.| +|.+|+.+++.++.+|++|+++++++++.+.+. .+|.
T Consensus 167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~ 212 (370)
T TIGR00518 167 PGDVTIIG-GGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG 212 (370)
T ss_pred CceEEEEc-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc
Confidence 45699999 599999999999999999999999888877664 4553
No 158
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=95.19 E-value=0.48 Score=41.77 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=69.4
Q ss_pred EEEEEEeCCCCCccCCCCEEEEeCCC--------------------------CcceeeEEEecCCCeEECCCCCCHHHH-
Q 036416 134 VGEVVAVGPGLTGRTVGDIIAYAGGA--------------------------MGSYAEEQILPANKVVPVPSSIDPVIA- 186 (256)
Q Consensus 134 ~G~V~~vG~~v~~~~~Gd~V~~~~~~--------------------------~G~~a~~~~v~~~~~~~ip~~~~~~~a- 186 (256)
-++|++ +.+.++.+|.||.++-+. .-.|-+|.++..+..+ +-+.+..
T Consensus 38 fA~Vve--S~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y----~~~~e~~~ 111 (314)
T PF11017_consen 38 FATVVE--SRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAY----DPEREDWQ 111 (314)
T ss_pred EEEEEe--eCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCccc----CcchhHHH
Confidence 466777 889999999999987541 0122233333322211 0122222
Q ss_pred hhhchhHHHHHHHHHHHc--CCCCCCEEEEecCCChHHHHHHHHHH-HcC-CeEEEEeCChhhHHHHHhCCC
Q 036416 187 ASIMLKGMTAQFLLRRCF--KVEPGHTVLIQAAAGGVGSLLCQWAN-ALG-ATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 187 a~l~~~~~ta~~~l~~~~--~~~~g~~VlI~ga~g~vG~~ai~la~-~~g-a~Vi~~~~~~~~~~~~~~~Ga 254 (256)
+.+-.-+.|.|..-.... +.-..+.|+|.+|++=+++..+.+++ ..+ .+++++++. ...++.+++|+
T Consensus 112 ~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~-~N~~Fve~lg~ 182 (314)
T PF11017_consen 112 MLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSA-RNVAFVESLGC 182 (314)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecC-cchhhhhccCC
Confidence 233345566665422221 12344678999999999999888888 444 489999986 45678899986
No 159
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.19 E-value=0.07 Score=48.52 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416 193 GMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 193 ~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~ 252 (256)
....+..+....++++|++||-+| + |.|..+..+++..|++|++++.+++..+.+++.
T Consensus 152 q~~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 152 QEAKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEHYGVSVVGVTISAEQQKLAQER 209 (383)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 344455555667889999999999 4 678888999998899999999999998888764
No 160
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.18 E-value=0.06 Score=46.62 Aligned_cols=50 Identities=32% Similarity=0.412 Sum_probs=36.6
Q ss_pred HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
.+.+.+++++|++||-+| || -|..++.+|+..|++|++++.+++..++++
T Consensus 53 ~~~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIG-CG-WGGLAIYAAERYGCHVTGITLSEEQAEYAR 102 (273)
T ss_dssp HHHTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEEEEES-HHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHH
Confidence 344667899999999999 45 788899999999999999999998887764
No 161
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.14 E-value=0.061 Score=45.55 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.++||.||+|++|..+++.....|++|++++++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999998899999999887
No 162
>PLN02253 xanthoxin dehydrogenase
Probab=95.13 E-value=0.067 Score=45.87 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=34.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~ 247 (256)
.|.+++|.||+|++|.++++.+...|++|+++++++++.+
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~ 56 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ 56 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4788999999999999999888889999999988765543
No 163
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.11 E-value=0.13 Score=47.42 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=79.9
Q ss_pred CCCcccEEEEEEeCCCCCccCCCCEEEEe----------------CCCCcceeeEEEecCCCeEE---C-CCCCCHHHHh
Q 036416 128 TPGMEAVGEVVAVGPGLTGRTVGDIIAYA----------------GGAMGSYAEEQILPANKVVP---V-PSSIDPVIAA 187 (256)
Q Consensus 128 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------~~~~G~~a~~~~v~~~~~~~---i-p~~~~~~~aa 187 (256)
.-|.|+++.+.+|++++++.-+|+.-+.- ...++.|++++.++. .+.. + +..++...+|
T Consensus 89 ~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A 167 (417)
T TIGR01035 89 LTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSAA 167 (417)
T ss_pred cCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHHH
Confidence 46889999999999999887777754410 012468888888775 3332 3 3344433332
Q ss_pred hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHH-HHHhCCC
Q 036416 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAA-QAKDDGC 254 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~-~~~~~Ga 254 (256)
.-.+. ......+|++|+|+| +|.+|..+++.++..| .+|+++.++.++.+ +++++|.
T Consensus 168 --------v~la~-~~~~~l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 168 --------VELAE-RIFGSLKGKKALLIG-AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG 226 (417)
T ss_pred --------HHHHH-HHhCCccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 11122 222346789999999 5999999999999999 48999999987754 6677774
No 164
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.03 E-value=0.069 Score=47.20 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=37.9
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
-.|.+++|.|+++|+|..++..+...|++|+..+++.++.+.+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~ 75 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEA 75 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 3567899999999999999999999999999999998766554
No 165
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=94.90 E-value=0.14 Score=45.23 Aligned_cols=53 Identities=28% Similarity=0.319 Sum_probs=47.4
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.+.+.||.++||-.-+|.+|...+.+|...|.++|++.. +.+|+..+++||+.
T Consensus 97 ~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gae 152 (362)
T KOG1252|consen 97 KGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAE 152 (362)
T ss_pred cCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCE
Confidence 357899999999999999999999999999999888875 47889999999974
No 166
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.63 E-value=0.23 Score=43.09 Aligned_cols=65 Identities=26% Similarity=0.276 Sum_probs=49.8
Q ss_pred CCCCHHHHhhhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 179 SSIDPVIAASIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
+++++++|- ..+...+....++++|++||=+| .|=|.+++..|+..|++|++++-+++..+.+++
T Consensus 49 ~~~tL~eAQ------~~k~~~~~~kl~L~~G~~lLDiG--CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 49 PDMTLEEAQ------RAKLDLILEKLGLKPGMTLLDIG--CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred CCCChHHHH------HHHHHHHHHhcCCCCCCEEEEeC--CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH
Confidence 334555552 33444555678999999999999 455888999999999999999999988776643
No 167
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.62 E-value=0.21 Score=43.50 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=35.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA 249 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~ 249 (256)
.+.+|+|+| +|++|.+++..+...|+ +|++++++.+|.+.+
T Consensus 126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l 167 (284)
T PRK12549 126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAAL 167 (284)
T ss_pred cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 568899999 69999999999999998 799999998876644
No 168
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.57 E-value=0.23 Score=43.24 Aligned_cols=92 Identities=14% Similarity=0.085 Sum_probs=56.7
Q ss_pred cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH--HHHHHcCCCCCCEEEEecCCChHHHH
Q 036416 147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF--LLRRCFKVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~--~l~~~~~~~~g~~VlI~ga~g~vG~~ 224 (256)
+.+|++.++.+. |.++-..+....+.+.+++.|... ....|... .+.. ...+|++||-.| +|. |..
T Consensus 106 ~~~g~~~~i~p~----w~~~~~~~~~~~i~ldpg~aFgtG----~h~tt~l~l~~l~~--~~~~g~~VLDvG-cGs-G~l 173 (288)
T TIGR00406 106 VQFGKRFWICPS----WRDVPSDEDALIIMLDPGLAFGTG----THPTTSLCLEWLED--LDLKDKNVIDVG-CGS-GIL 173 (288)
T ss_pred EEEcCeEEEECC----CcCCCCCCCcEEEEECCCCcccCC----CCHHHHHHHHHHHh--hcCCCCEEEEeC-CCh-hHH
Confidence 678887777654 323322233455666666654432 22333321 2222 246889999999 566 888
Q ss_pred HHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416 225 LCQWANALGA-TVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 225 ai~la~~~ga-~Vi~~~~~~~~~~~~~~ 251 (256)
++.+++ .|+ +|++++.++...+.+++
T Consensus 174 ai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 174 SIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred HHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 877776 566 89999999887776654
No 169
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.48 E-value=0.21 Score=43.71 Aligned_cols=46 Identities=30% Similarity=0.369 Sum_probs=41.0
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
+.++-..++|.|++.++|++.+..++..|+.|..+.++.+|+..++
T Consensus 29 ~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~ 74 (331)
T KOG1210|consen 29 KPKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAK 74 (331)
T ss_pred ccCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHH
Confidence 3455588999999999999999999999999999999999887765
No 170
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.40 E-value=0.11 Score=47.61 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=34.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~ 247 (256)
.|++++|.||+|++|.+++......|++|+++++++++.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4789999999999999999988889999999998766543
No 171
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.39 E-value=0.15 Score=40.47 Aligned_cols=47 Identities=32% Similarity=0.338 Sum_probs=36.0
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDG 253 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~G 253 (256)
.-.|++++|.| -|-+|.-+++.++.+|++|++++.++-+.-.+..-|
T Consensus 20 ~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG 66 (162)
T PF00670_consen 20 MLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG 66 (162)
T ss_dssp --TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT
T ss_pred eeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC
Confidence 45899999999 899999999999999999999999987765555444
No 172
>PRK06720 hypothetical protein; Provisional
Probab=94.38 E-value=0.16 Score=40.59 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.0
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~ 246 (256)
.|..++|.||++++|..++......|++|++++++.+..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~ 53 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESG 53 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 578999999999999999988888999999999876554
No 173
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.38 E-value=0.024 Score=52.38 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=37.3
Q ss_pred HcCCCCCCEEE----EecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416 203 CFKVEPGHTVL----IQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245 (256)
Q Consensus 203 ~~~~~~g~~Vl----I~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~ 245 (256)
..++++|+++| |+||+|++|.+++|+++..|++|+++...+.+
T Consensus 28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~ 74 (450)
T PRK08261 28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLT 74 (450)
T ss_pred ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccc
Confidence 34678999998 99999999999999999999999998766553
No 174
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=94.37 E-value=0.21 Score=43.67 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+.+++|+ .+|-+-+|.+|...+.+|+.+|.+++.+.. +.+|++.++.+||.
T Consensus 55 ~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAe 110 (300)
T COG0031 55 KRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAE 110 (300)
T ss_pred HcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Confidence 335699999 667777899999999999999998777764 58899999999984
No 175
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.35 E-value=0.26 Score=42.68 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=36.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQA 249 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~ 249 (256)
..+.+|+|+| +|++|.+++..+...| .+|+++.++.++.+.+
T Consensus 121 ~~~k~vlVlG-aGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l 163 (278)
T PRK00258 121 LKGKRILILG-AGGAARAVILPLLDLGVAEITIVNRTVERAEEL 163 (278)
T ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 3567899999 5999999999999999 5899999998876544
No 176
>PRK12367 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.1 Score=44.24 Aligned_cols=36 Identities=36% Similarity=0.500 Sum_probs=32.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|.+++|.||+|++|..+++.....|++|+++++++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 468999999999999999998888999999998865
No 177
>PRK06484 short chain dehydrogenase; Validated
Probab=94.27 E-value=0.12 Score=48.49 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=38.2
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
..|.++||.||++++|..+++.....|++|+.+++++++.+.++
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 310 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLA 310 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35789999999999999999988899999999999877766554
No 178
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.23 E-value=0.27 Score=42.75 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=37.6
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~ 250 (256)
.+|++++|.| +||.+.+++.-+...|+ +|+++.++.+|.+.+.
T Consensus 124 ~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La 167 (283)
T COG0169 124 VTGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELA 167 (283)
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 4689999999 59999999999999997 7999999988866553
No 179
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.02 E-value=0.35 Score=41.85 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=36.8
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA 249 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~ 249 (256)
....+.+++|.| +||.+.+++..+...|+ +|+++.++++|.+.+
T Consensus 118 ~~~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 118 QVPPDLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CCCCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 344567899999 59999999999999998 699999998887654
No 180
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.00 E-value=0.15 Score=43.15 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~ 247 (256)
.+.+|||.||+|.+|..++..+...|.+|+++.+++++..
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 55 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK 55 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4678999999999999999888888999999988766543
No 181
>PLN02686 cinnamoyl-CoA reductase
Probab=93.86 E-value=0.17 Score=45.68 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=36.3
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
...+++|||.||+|.+|..++..+...|.+|+++.++.++.+.+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35678999999999999999999989999999888776554433
No 182
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.86 E-value=0.37 Score=41.51 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
...+.+++|.|+ |++|.+++..+...|++|+++.+++++.+.+
T Consensus 114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~l 156 (270)
T TIGR00507 114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEEL 156 (270)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 355789999995 9999999988888899999999987775433
No 183
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.82 E-value=0.29 Score=42.60 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=35.4
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA 249 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~ 249 (256)
..+.+++|.| +||.+.+++..+...|+ +|+++.++.+|.+.+
T Consensus 125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L 167 (283)
T PRK14027 125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL 167 (283)
T ss_pred cCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence 3478999999 59999999998888998 789999998886654
No 184
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.78 E-value=0.17 Score=47.24 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh---------------------hhHHHHHhCCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK---------------------EKAAQAKDDGCH 255 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~---------------------~~~~~~~~~Ga~ 255 (256)
.+++|+|+| +|+.|+.++..++..|.+|++++..+ ...++++++|++
T Consensus 140 ~~~~V~IIG-~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~ 207 (467)
T TIGR01318 140 TGKRVAVIG-AGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIE 207 (467)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCE
Confidence 688999999 59999999999999999998888653 245677888864
No 185
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.54 E-value=0.22 Score=43.29 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=35.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA 249 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~ 249 (256)
.+.+|+|+| +|+.+.+++..+..+|+ +|+++.++.+|.+.+
T Consensus 124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 578999999 69999999999999998 799999998876644
No 186
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.50 E-value=0.24 Score=36.00 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=35.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhhHHHHHh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANA-LGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~-~ga~Vi~~~~~~~~~~~~~~ 251 (256)
||++||-.| .+.|..++.+++. .+++|++++.+++-.+.+++
T Consensus 1 p~~~vLDlG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 1 PGGRVLDLG--CGTGRLSIALARLFPGARVVGVDISPEMLEIARE 43 (112)
T ss_dssp TTCEEEEET--TTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEc--CcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 688999998 5668999999984 78899999999988877754
No 187
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=93.38 E-value=0.21 Score=48.82 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~ 248 (256)
.|.++||.||+|++|..+++.....|++|++++++.++.+.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~ 453 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEA 453 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 47899999999999999999888899999999998766543
No 188
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=93.32 E-value=0.2 Score=43.86 Aligned_cols=91 Identities=25% Similarity=0.276 Sum_probs=56.6
Q ss_pred cCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH--HHHHHcCCCCCCEEEEecCCChHHHH
Q 036416 147 RTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF--LLRRCFKVEPGHTVLIQAAAGGVGSL 224 (256)
Q Consensus 147 ~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~--~l~~~~~~~~g~~VlI~ga~g~vG~~ 224 (256)
+++|++.++.+. |.++-.-+...++.+.+++.|-.. ....|... .|... .++|++||=.| .|.|.+
T Consensus 108 ~~vg~~~~I~P~----w~~~~~~~~~~~I~idPg~AFGTG----~H~TT~lcl~~l~~~--~~~g~~vLDvG--~GSGIL 175 (295)
T PF06325_consen 108 IRVGDRLVIVPS----WEEYPEPPDEIVIEIDPGMAFGTG----HHPTTRLCLELLEKY--VKPGKRVLDVG--CGSGIL 175 (295)
T ss_dssp EEECTTEEEEET----T----SSTTSEEEEESTTSSS-SS----HCHHHHHHHHHHHHH--SSTTSEEEEES---TTSHH
T ss_pred EEECCcEEEECC----CcccCCCCCcEEEEECCCCcccCC----CCHHHHHHHHHHHHh--ccCCCEEEEeC--CcHHHH
Confidence 678987776654 555522244567788888766543 34444442 23332 67899999888 566777
Q ss_pred HHHHHHHcCC-eEEEEeCChhhHHHHH
Q 036416 225 LCQWANALGA-TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 225 ai~la~~~ga-~Vi~~~~~~~~~~~~~ 250 (256)
++..++ +|| +|+++|.++.-.+.++
T Consensus 176 aiaA~k-lGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 176 AIAAAK-LGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp HHHHHH-TTBSEEEEEESSCHHHHHHH
T ss_pred HHHHHH-cCCCeEEEecCCHHHHHHHH
Confidence 777666 588 7999999877555544
No 189
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.27 E-value=0.19 Score=48.99 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=31.9
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
..|++|+|+| +|+.|+.++..++..|.+|++++..+
T Consensus 325 ~~~~~VaIIG-aGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIG-AGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3588999999 59999999999999999999998753
No 190
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.27 E-value=0.49 Score=38.69 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=38.4
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHH
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~ 250 (256)
...+.+|++|+-.| +|. |..++++|+..+ .+|++++.+++..+.++
T Consensus 35 ~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 35 KLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 35788999999999 577 999999998864 58999999988877654
No 191
>PLN03013 cysteine synthase
Probab=93.25 E-value=0.44 Score=43.91 Aligned_cols=54 Identities=26% Similarity=0.320 Sum_probs=44.6
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
....+++|.+.+|...+|..|.+++..|+.+|.+++++.. +++|.+.++.+||+
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAe 223 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAE 223 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCE
Confidence 4456788866677777899999999999999998777754 47789999999985
No 192
>PLN02565 cysteine synthase
Probab=93.15 E-value=0.55 Score=41.66 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=43.5
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
...+.+|++.+|...+|..|++++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 60 ~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~ 115 (322)
T PLN02565 60 KGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAE 115 (322)
T ss_pred cCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Confidence 345678877677777899999999999999998777665 47889999999984
No 193
>PRK06128 oxidoreductase; Provisional
Probab=93.10 E-value=0.26 Score=42.93 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.++||.||+|++|..++......|++|+.+..+
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999999999999999888899999887654
No 194
>PRK07201 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.25 Score=47.80 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=35.3
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~ 248 (256)
|.+++|.||+|++|..++......|++|+++++++++.+.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~ 410 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDE 410 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 6789999999999999998888889999999998776543
No 195
>PRK07985 oxidoreductase; Provisional
Probab=93.01 E-value=0.25 Score=42.99 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=31.0
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.++||.||+|++|..+++.+...|++|+.+.++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 56799999999999999999998899999887653
No 196
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=92.96 E-value=0.3 Score=42.69 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=37.0
Q ss_pred CCCCEEEEecCCChHHHH-HHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSL-LCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~-ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
+.|++.+|.||+.++|.+ +-++|+ .|.+|+.+.++++|++.++
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvvLIsRt~~KL~~v~ 90 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVVLISRTQEKLEAVA 90 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCCEEEEEeCCHHHHHHHH
Confidence 467999999999999976 666666 9999999999999987664
No 197
>PRK05855 short chain dehydrogenase; Validated
Probab=92.94 E-value=0.28 Score=46.38 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ 248 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~ 248 (256)
.+.++||.||+|++|..+++.+...|++|+.++++.++.+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~ 354 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAER 354 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45789999999999999998888899999999998766543
No 198
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.92 E-value=0.58 Score=40.82 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~~ 243 (256)
.+.+++|.|| |++|.+++..+...|++ |+++.++.
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5789999995 99999999888889995 99998875
No 199
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.62 E-value=0.29 Score=45.20 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=32.0
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+|.++||.|++|++|..+++.+...|++|+++++.
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~ 243 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP 243 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999999999999998874
No 200
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.62 E-value=0.25 Score=48.00 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=31.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|++|+|+| +|+.|+.++..++..|.+|++++..+
T Consensus 309 ~~kkVaIIG-~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIG-AGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 489999999 59999999999999999999998765
No 201
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.52 E-value=0.36 Score=45.08 Aligned_cols=46 Identities=24% Similarity=0.180 Sum_probs=36.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-----hHHHHHhCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-----KAAQAKDDGC 254 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~-----~~~~~~~~Ga 254 (256)
.+.+|+|+| .|++|+.++..++..|++|++++..+. ..+.+++.|+
T Consensus 15 ~~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv 65 (480)
T PRK01438 15 QGLRVVVAG-LGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA 65 (480)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC
Confidence 577999999 599999999999999999999986542 2345666675
No 202
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.38 E-value=0.38 Score=41.71 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|.++||.||+|++|..++......|++|+.+.++.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 478999999999999999988888999999888764
No 203
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=92.31 E-value=0.17 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=14.4
Q ss_pred eEEEEEcccCCCCceEEEEeeCCCC
Q 036416 70 VKAIRVYEHGDPEVLKWEDVEIGEP 94 (256)
Q Consensus 70 ~~a~~~~~~~~~~~l~~~~~~~p~~ 94 (256)
|||+++. +++++.++++|.|.+
T Consensus 1 MkAv~y~---G~~~v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYH---GPKDVRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEE---ETTEEEEEEE----S
T ss_pred CcceEEe---CCCceEEEECCCccc
Confidence 8999999 566699999998865
No 204
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=92.08 E-value=0.83 Score=41.35 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=44.4
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
....+++|.+.+|...+|..|.+++..|+.+|.+++++.. +.+|.+.++.+||+
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~ 159 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAE 159 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 3345788877777787999999999999999998777754 36789999999985
No 205
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.07 E-value=0.68 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
|+|.| .|.+|..+++.++..+.+|++++.++++.+.+++.|.
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~ 42 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV 42 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS
T ss_pred eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc
Confidence 67889 6999999999999977799999999999998887774
No 206
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.06 E-value=0.26 Score=43.92 Aligned_cols=47 Identities=34% Similarity=0.210 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 195 TAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 195 ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
|||--++....+ ++.+|||.||+|-+|..++..+...|.+|+++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455555443333 45789999999999999999999899999999874
No 207
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.03 E-value=0.41 Score=41.69 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=32.0
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
-.|+.|||.||.+|+|.+.++=...+|++++.+|.+.+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~ 73 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ 73 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc
Confidence 36899999999999999877777778999888887643
No 208
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.88 E-value=0.89 Score=42.12 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=31.0
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
-.|.+|+|.| .|.||..+++.+..+|++|+++..++
T Consensus 235 l~Gk~VaVqG-~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 235 LEGKTVVVSG-SGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3789999999 79999999999999999999555443
No 209
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.86 E-value=0.87 Score=39.76 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~ 243 (256)
.+.+++|+| +|+.+.+++..+...|+ +|+++.+++
T Consensus 123 ~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 123 KGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 567999999 59999987777777898 799998884
No 210
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.80 E-value=1.1 Score=35.79 Aligned_cols=57 Identities=23% Similarity=0.106 Sum_probs=40.5
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGG-VGSLLCQWANALGATVIGTVSTKEKA 246 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~~~~~~~~ 246 (256)
.|+...++...+.....--.|.+|+|.|+ |. +|..++..++..|++|+++.++.+++
T Consensus 24 ~p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~~~l 81 (168)
T cd01080 24 IPCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKTKNL 81 (168)
T ss_pred cCChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCchhH
Confidence 34444444444444433357899999995 76 59989999999999999888875433
No 211
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.77 E-value=0.97 Score=37.96 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=33.7
Q ss_pred HHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe---EEEEeCC
Q 036416 198 FLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT---VIGTVST 242 (256)
Q Consensus 198 ~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~---Vi~~~~~ 242 (256)
.+++....--.+.+++|+| +|+.|..++..+...|++ ++.++++
T Consensus 14 ~al~~~g~~l~~~rvlvlG-AGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 14 NALKLVGKKIEEVKIVING-AGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHhCCCccCCEEEEEC-chHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 3444432224678999999 599999999988888985 8888887
No 212
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.56 E-value=0.39 Score=43.74 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~ 245 (256)
+-..+.+|||.||+|.+|..++..+...|.+|++++++..+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 45678899999999999999999888899999999987643
No 213
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=91.46 E-value=1.3 Score=38.54 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=41.1
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+.+|++|+.. .+|..|.+++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 54 g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~ 107 (290)
T TIGR01138 54 GEIKPGDVLIEA-TSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAE 107 (290)
T ss_pred CCCCCCCEEEEE-CCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCE
Confidence 445677776665 4899999999999999998777665 36789999999985
No 214
>PRK11761 cysM cysteine synthase B; Provisional
Probab=91.36 E-value=1.3 Score=38.70 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=41.5
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+.+|++|+... +|..|++++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 58 g~~~~g~~vv~aS-sGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~ 111 (296)
T PRK11761 58 GEIKPGDTLIEAT-SGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAE 111 (296)
T ss_pred CCCCCCCEEEEeC-CChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 4467788776655 899999999999999998777664 36789999999985
No 215
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.30 E-value=1.8 Score=33.47 Aligned_cols=46 Identities=35% Similarity=0.373 Sum_probs=36.4
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHH-HHhCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQ-AKDDG 253 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~-~~~~G 253 (256)
..+.+++|.| +|.+|...++.+...| .+|++++++.++.+. +++++
T Consensus 17 ~~~~~i~iiG-~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 17 LKGKKVLILG-AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 4578899999 5999999999888886 589999998777654 45555
No 216
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=91.25 E-value=0.79 Score=41.71 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=33.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
-.|.+|.|.| .|.+|..+++.+...|++|+++..+..
T Consensus 205 l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 205 LEGARVAVQG-FGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 4899999999 799999999999888999999988765
No 217
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.23 E-value=0.75 Score=38.21 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=35.7
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~ 250 (256)
....+++|++||-+| +|.|..++-+|+..|. +|+.++..++-.+.++
T Consensus 66 ~~L~l~pg~~VLeIG--tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~ 114 (209)
T PF01135_consen 66 EALDLKPGDRVLEIG--TGSGYQAALLAHLVGPVGRVVSVERDPELAERAR 114 (209)
T ss_dssp HHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred HHHhcCCCCEEEEec--CCCcHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence 556799999999999 6789999999999875 6999998876555543
No 218
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.78 Score=38.00 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=40.8
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHH----HHhCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQ----AKDDGC 254 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~----~~~~Ga 254 (256)
....+++|++||=+| +|.|..++-+|+..| +|+.+.+.++=.+. ++.+|.
T Consensus 66 ~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~ 119 (209)
T COG2518 66 QLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGY 119 (209)
T ss_pred HHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCC
Confidence 456899999999999 678999999999998 99999998664444 455665
No 219
>PRK07574 formate dehydrogenase; Provisional
Probab=91.07 E-value=0.5 Score=42.99 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=36.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.....+..+++|+
T Consensus 191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~ 236 (385)
T PRK07574 191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL 236 (385)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence 578999999 7999999999999999999999987533344444553
No 220
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.04 E-value=0.6 Score=44.37 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
.+.+++|.|+ |++|.+++..+...|++|+++.++.++.+.+
T Consensus 378 ~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~l 418 (529)
T PLN02520 378 AGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKEL 418 (529)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 4678999995 9999999999999999999999987776544
No 221
>PLN02427 UDP-apiose/xylose synthase
Probab=91.04 E-value=0.58 Score=42.26 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQA 249 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~ 249 (256)
-+..+|||.||+|-+|..+++.+... |.+|++++++.++.+.+
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l 55 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHL 55 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhh
Confidence 34568999999999999988888877 58999999776554443
No 222
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.80 E-value=0.7 Score=40.99 Aligned_cols=47 Identities=28% Similarity=0.271 Sum_probs=38.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
=.|.+|.|+| .|.+|...++.++..|.+|++.++.....+.+++.|+
T Consensus 14 LkgKtVGIIG-~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~ 60 (335)
T PRK13403 14 LQGKTVAVIG-YGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGF 60 (335)
T ss_pred hCcCEEEEEe-EcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCC
Confidence 3688999999 7999999999999999999988766544556666665
No 223
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.74 E-value=1.2 Score=32.71 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~ 250 (256)
....+.++++|+-.| +|. |..+..+++..+ .+|++++.++...+.++
T Consensus 13 ~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 13 SKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRVYAIERNPEALRLIE 60 (124)
T ss_pred HHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence 334677888999999 455 999999999874 69999999988777654
No 224
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.60 E-value=0.72 Score=43.15 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=37.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH-HHHhCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA-QAKDDGC 254 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~-~~~~~Ga 254 (256)
-.+.+|+|+| .|+.|++++.++...|++|++.+....+.. .+.++|+
T Consensus 13 ~~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi 60 (473)
T PRK00141 13 ELSGRVLVAG-AGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGV 60 (473)
T ss_pred ccCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCc
Confidence 3567899999 699999999999999999999997654433 3455564
No 225
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.47 E-value=0.62 Score=44.48 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=40.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
++++|.| .|.+|..+++..+..|.++++++.++++.+.+++.|.
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~ 461 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGI 461 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC
Confidence 6789999 7999999999999999999999999999999988774
No 226
>PLN03139 formate dehydrogenase; Provisional
Probab=90.24 E-value=0.63 Score=42.35 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=37.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.....+..+++|+
T Consensus 198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred CCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence 578999999 7999999999999999999999876444444455553
No 227
>PRK10717 cysteine synthase A; Provisional
Probab=90.17 E-value=1.9 Score=38.24 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=40.5
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+++|++|+... +|..|+++...|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 59 g~~~~g~~vv~aS-sGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~ 112 (330)
T PRK10717 59 GLLKPGGTIVEGT-AGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAE 112 (330)
T ss_pred CCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCE
Confidence 3467788766654 899999999999999997666664 36688999999985
No 228
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=90.15 E-value=1 Score=37.04 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=36.4
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGC 254 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga 254 (256)
..++|.|++.++|.+..|.....|++|.+.+.+.+. .+.++.+|.
T Consensus 15 k~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g 60 (256)
T KOG1200|consen 15 KVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG 60 (256)
T ss_pred ceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC
Confidence 457899999999999999999999999999976543 344566664
No 229
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.13 E-value=2.2 Score=35.56 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=29.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|+|+| .|.+|..+++.+...|++++++..+
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 688999999 7999999999999999976665544
No 230
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.07 E-value=1.5 Score=36.37 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=38.9
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~ 251 (256)
...++++|++||-.| .|.|..+..+++..+ .+|++++.+++-.+.+++
T Consensus 70 ~~l~~~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~ 119 (212)
T PRK13942 70 ELLDLKEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK 119 (212)
T ss_pred HHcCCCCcCEEEEEC--CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 445789999999998 677888888888875 589999999887766643
No 231
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=90.06 E-value=2.1 Score=37.55 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=60.5
Q ss_pred ccCCCCEEEEeCCCCcceeeEEEecCCCeEECCCCCCHHHHhhhchhHHHHHH--HHHHHcCCCCCCEEEEecCCChHHH
Q 036416 146 GRTVGDIIAYAGGAMGSYAEEQILPANKVVPVPSSIDPVIAASIMLKGMTAQF--LLRRCFKVEPGHTVLIQAAAGGVGS 223 (256)
Q Consensus 146 ~~~~Gd~V~~~~~~~G~~a~~~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~--~l~~~~~~~~g~~VlI~ga~g~vG~ 223 (256)
.+++|++.++.++ |.+|..-.....+++.+++.|- .+....|++. ++.. .+++|.+||=.| .|.|.
T Consensus 108 P~rig~~f~I~Ps----w~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lcL~~Le~--~~~~g~~vlDvG--cGSGI 175 (300)
T COG2264 108 PVRIGERFVIVPS----WREYPEPSDELNIELDPGLAFG----TGTHPTTSLCLEALEK--LLKKGKTVLDVG--CGSGI 175 (300)
T ss_pred cEEeeeeEEECCC----CccCCCCCCceEEEEccccccC----CCCChhHHHHHHHHHH--hhcCCCEEEEec--CChhH
Confidence 3678998887764 4444322234567777777553 3556666664 3333 367999999998 56687
Q ss_pred HHHHHHHHcCC-eEEEEeCChhhHHHHH
Q 036416 224 LLCQWANALGA-TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 224 ~ai~la~~~ga-~Vi~~~~~~~~~~~~~ 250 (256)
++|..++ +|| +|+++|-++--.+.++
T Consensus 176 LaIAa~k-LGA~~v~g~DiDp~AV~aa~ 202 (300)
T COG2264 176 LAIAAAK-LGAKKVVGVDIDPQAVEAAR 202 (300)
T ss_pred HHHHHHH-cCCceEEEecCCHHHHHHHH
Confidence 7776665 677 6999998876555443
No 232
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.94 E-value=0.71 Score=44.76 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=41.2
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
.++|+|.| .|.+|+.+++.++..|.++++++.++++.+.++++|.
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~ 444 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGM 444 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCC
Confidence 36799999 7999999999999999999999999999999998875
No 233
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.93 E-value=0.78 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=27.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTV 240 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~ 240 (256)
.|.+|+|.|| |.+|..-++.....|++|+++.
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence 5789999995 9999988888888999988885
No 234
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=89.91 E-value=0.96 Score=41.14 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCCEEEEecCCChHHHH--HHHHHHHcCCeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSL--LCQWANALGATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~--ai~la~~~ga~Vi~~~~ 241 (256)
..|+++||.|+++++|++ +++.+ ..|++++++..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~ 74 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF 74 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence 456899999999999999 55666 78999888873
No 235
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=89.88 E-value=1.8 Score=40.58 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
.+.+++|.| +|++|.+++..+...|++|+++.+++++.+.+
T Consensus 331 ~~k~vlIiG-aGgiG~aia~~L~~~G~~V~i~~R~~~~~~~l 371 (477)
T PRK09310 331 NNQHVAIVG-AGGAAKAIATTLARAGAELLIFNRTKAHAEAL 371 (477)
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 567899999 59999999999999999999999887776544
No 236
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.82 E-value=0.86 Score=31.27 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.0
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
+|+|.| +|.+|+-++..++..|.+|+.+.+.+.
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999 599999999999999999999987643
No 237
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=89.76 E-value=2.3 Score=37.05 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=40.2
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+.+|++| |...+|..|.+++..|+..|.+.+++.. ++.|.+.++.+||+
T Consensus 52 g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~ 105 (298)
T TIGR01139 52 GLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAE 105 (298)
T ss_pred CCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCE
Confidence 345677776 5555899999999999999997666665 36688899999985
No 238
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.65 E-value=0.74 Score=39.24 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=34.3
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
.+.+-.+++|+| +|.++...+++|+.+|++|++++..++
T Consensus 96 ~~~p~~~L~IfG-aG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 96 EAPPAPHVVLFG-AGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred ccCCCCEEEEEC-CcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 456778999999 599999999999999999999987654
No 239
>PLN00011 cysteine synthase
Probab=89.63 E-value=2.1 Score=37.91 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=41.6
Q ss_pred HHcCCCCC-CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 202 RCFKVEPG-HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g-~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
....+.+| ++|+ ...+|..|++++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 61 ~~g~~~~g~~~vv-~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~ 117 (323)
T PLN00011 61 DKGLITPGKSTLI-EATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAE 117 (323)
T ss_pred HcCCCCCCCcEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Confidence 33457788 5554 566899999999999999998777765 35788999999985
No 240
>PLN02572 UDP-sulfoquinovose synthase
Probab=89.61 E-value=0.61 Score=43.23 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=30.8
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
..+.+|||.||+|.+|..+++.+...|.+|+++++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 35678999999999999999999889999999863
No 241
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=89.61 E-value=2.4 Score=37.05 Aligned_cols=51 Identities=27% Similarity=0.379 Sum_probs=40.0
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+.+|++|+ ...+|..|.++...|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 53 g~~~~g~~vv-~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~ 106 (299)
T TIGR01136 53 GLLKPGDTII-EATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAE 106 (299)
T ss_pred CCCCCCCEEE-EeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence 3456778765 555899999999999999997666554 46788999999985
No 242
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.58 E-value=1.6 Score=37.33 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
-+|.+|+|.| .|.+|+.+++++..+|++|+++..
T Consensus 36 l~g~~vaIqG-fGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 36 LKGKRVAISG-SGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3688999999 799999999999999999997765
No 243
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=89.57 E-value=2 Score=39.50 Aligned_cols=46 Identities=30% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDG 253 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~G 253 (256)
-.|.+|+|.| +|++|.+++..+...|+ +++++.++.+|.+ ++.++|
T Consensus 179 l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~ 226 (414)
T PRK13940 179 ISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR 226 (414)
T ss_pred ccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence 4578999999 59999999999999997 6888999877755 445565
No 244
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=89.38 E-value=2.2 Score=39.51 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=41.9
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+.+|++|+-.. +|..|.+++..|+.+|.+++++.. +++|.+.++.+||+
T Consensus 57 g~~~~g~~vv~~s-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 110 (454)
T TIGR01137 57 GRLKPGDTIIEPT-SGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAE 110 (454)
T ss_pred CCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCE
Confidence 4457788776664 899999999999999998777775 46789999999985
No 245
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.32 E-value=1.6 Score=38.70 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=37.9
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~ 250 (256)
....++++++||..| +| .|..++.+++..+. .|++++.+++..+.++
T Consensus 74 ~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar 122 (322)
T PRK13943 74 EWVGLDKGMRVLEIG-GG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK 122 (322)
T ss_pred HhcCCCCCCEEEEEe-CC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 345788999999999 45 69999999998864 6999999987665554
No 246
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.25 E-value=0.97 Score=40.28 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=32.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.+++.+
T Consensus 149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~ 184 (333)
T PRK13243 149 YGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRK 184 (333)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 578999999 799999999999999999999998644
No 247
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.13 E-value=2.4 Score=37.97 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=36.0
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHH-cCC-eEEEEeCChhhHHHH-HhCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANA-LGA-TVIGTVSTKEKAAQA-KDDG 253 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~-~ga-~Vi~~~~~~~~~~~~-~~~G 253 (256)
-.+.+|+|.||+|.+|..+++.+.. .|+ +++.+.++.++...+ ++++
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~ 202 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG 202 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc
Confidence 3678999999999999988887754 465 788888887776654 3443
No 248
>PRK08317 hypothetical protein; Provisional
Probab=89.12 E-value=1.5 Score=36.20 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=39.9
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHhC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~~ 252 (256)
....++++++||-.| +|. |..+..+++..+ +++++++.+++..+.+++.
T Consensus 13 ~~~~~~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 13 ELLAVQPGDRVLDVG-CGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHcCCCCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 456788999999999 454 889999998873 5899999998887777653
No 249
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.97 E-value=2.4 Score=36.98 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=42.4
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~ 245 (256)
+|++..+.+..+....---.|.+|+|.|.+.-+|..++.++...||+|+.+.+....
T Consensus 138 ~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~ 194 (286)
T PRK14175 138 VPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKD 194 (286)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh
Confidence 466666666666544222479999999975559999999999999999988875433
No 250
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=88.89 E-value=1.5 Score=30.23 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCCCCCEEEEecCCChHHHHHH-HHHHHcCCeEEEEeC
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLC-QWANALGATVIGTVS 241 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai-~la~~~ga~Vi~~~~ 241 (256)
.++-.++|||+|++++.|++.- .+|-..||+.+.+.-
T Consensus 35 ~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 35 KINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp --TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 4534489999999999999853 344456788877764
No 251
>PRK14030 glutamate dehydrogenase; Provisional
Probab=88.86 E-value=2.3 Score=39.45 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGT 239 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~ 239 (256)
-.|.+|+|.| .|.||..+++.+...|++|+++
T Consensus 226 l~g~~vaIQG-fGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 226 IKGKTVAISG-FGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEE
Confidence 3689999999 7999999999999999999994
No 252
>PRK14967 putative methyltransferase; Provisional
Probab=88.80 E-value=2.1 Score=35.64 Aligned_cols=45 Identities=29% Similarity=0.342 Sum_probs=35.9
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~ 251 (256)
..++++++||-.| +|. |..++.+++. ++ +|++++.+++..+.+++
T Consensus 32 ~~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 32 EGLGPGRRVLDLC-TGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred cccCCCCeEEEec-CCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 3578899999999 565 9888888875 66 89999999887765543
No 253
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=88.78 E-value=1.4 Score=38.33 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
++.|+..+ +|..|.+++..|+..|.+++++.. +++|++.++.+|++
T Consensus 65 ~~~iv~~s-sGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~ 113 (304)
T cd01562 65 AKGVVAAS-AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAE 113 (304)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 45566655 799999999999999998777765 36688899999974
No 254
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.57 E-value=0.86 Score=42.26 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
.++.+|||.||+|-+|..+++.+...|.+|+++++
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 35689999999999999999999999999999875
No 255
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=88.51 E-value=0.96 Score=40.20 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=33.0
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
.|.++.|+| .|.+|.++++.++..|++|+..++.+.
T Consensus 145 ~gktvGIiG-~GrIG~avA~r~~~Fgm~v~y~~~~~~ 180 (324)
T COG1052 145 RGKTLGIIG-LGRIGQAVARRLKGFGMKVLYYDRSPN 180 (324)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 489999999 799999999999988999999998754
No 256
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=88.39 E-value=0.92 Score=40.89 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..+.+|||.||+|-+|..++..+...|.+|+++++.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 467899999999999999999999999999999864
No 257
>PLN02928 oxidoreductase family protein
Probab=88.36 E-value=0.89 Score=40.80 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++..|++|++++++
T Consensus 158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCC
Confidence 578999999 7999999999999999999999876
No 258
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.13 E-value=1.2 Score=43.02 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=40.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
+.|+|.| .|.+|..+++..+..|.++++++.++++.+.++++|.
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~ 444 (601)
T PRK03659 401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGY 444 (601)
T ss_pred CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCC
Confidence 5799999 6999999999999999999999999999999998874
No 259
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.05 E-value=0.65 Score=33.80 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|.+|||.|+ |.+|..-++.+...||+|+++....
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 5789999995 9999999999999999999999874
No 260
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=88.04 E-value=2.7 Score=36.94 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=36.6
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
-.+..|+|.|..+|.|...+.-+...|.+|++.+.+++..+.++
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~ 70 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLR 70 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHh
Confidence 35567999999999999988888889999999998776655543
No 261
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=87.94 E-value=3.5 Score=37.81 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=36.8
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
-+|...+|..|+.++..|+.+|.+++++.. +++|.+.++.+||+
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAe 182 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVT 182 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCE
Confidence 466666899999999999999998666664 47889999999985
No 262
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.84 E-value=1 Score=39.75 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus 144 ~gktvGIiG-~G~IG~~vA~~~~~fgm~V~~~d~~ 177 (311)
T PRK08410 144 KGKKWGIIG-LGTIGKRVAKIAQAFGAKVVYYSTS 177 (311)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhcCCEEEEECCC
Confidence 588999999 7999999999999999999999875
No 263
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.66 E-value=1.5 Score=40.80 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.+.+|+|+| .|..|++++++++..|++|++.|..+
T Consensus 13 ~~~~i~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 13 KNKKVAVVG-IGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred cCCeEEEEc-ccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 367899999 69999999999999999999999754
No 264
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=87.61 E-value=1.1 Score=41.50 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=32.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+++.+|||.||+|-+|..++..+...|.+|+++++.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456789999999999999999998899999999864
No 265
>PLN02970 serine racemase
Probab=87.42 E-value=2.4 Score=37.66 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=36.4
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+.|+.. .+|..|.+++..|+.+|.+++++.. +++|.+.++.+||+
T Consensus 76 ~~vv~a-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~ 123 (328)
T PLN02970 76 KGVVTH-SSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGI 123 (328)
T ss_pred CeEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCE
Confidence 445554 5899999999999999998777775 46788899999985
No 266
>PRK14031 glutamate dehydrogenase; Provisional
Probab=87.40 E-value=2.4 Score=39.36 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
-.|.+|+|.| .|.||..+++.+...|++|+++..
T Consensus 226 l~g~rVaVQG-fGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 226 LKGKVCLVSG-SGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3689999999 699999999999999999998554
No 267
>PRK06110 hypothetical protein; Provisional
Probab=87.33 E-value=2.6 Score=37.30 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=36.2
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+|...+|..|++++..|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 71 ~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~ 118 (322)
T PRK06110 71 RGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAE 118 (322)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 3467777899999999999999997666654 36788889999985
No 268
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=87.28 E-value=3.9 Score=31.66 Aligned_cols=54 Identities=24% Similarity=0.127 Sum_probs=40.7
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+++........+....---.|.+|+|+|.+..+|.-++.++...|++|+.+.+.
T Consensus 8 ~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~ 61 (140)
T cd05212 8 VSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK 61 (140)
T ss_pred cccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC
Confidence 344444445555444222479999999999999999999999999999999854
No 269
>PLN02477 glutamate dehydrogenase
Probab=87.25 E-value=2.4 Score=38.91 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=30.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|+|.| .|.||..+++++...|++|+++..+
T Consensus 205 ~g~~VaIqG-fGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 205 AGQTFVIQG-FGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEECC
Confidence 689999999 7999999999999999999966543
No 270
>PLN02356 phosphateglycerate kinase
Probab=87.24 E-value=3.3 Score=38.22 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.++++..| +...+|..|.+++.+|+.+|.+++++.. +++|.+.++.+||+
T Consensus 100 ~~~~~g~V-veaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAe 152 (423)
T PLN02356 100 QLFPGGVV-TEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGAT 152 (423)
T ss_pred ccCCCCEE-EEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCE
Confidence 44566654 4445899999999999999998777764 37889999999985
No 271
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.14 E-value=2.8 Score=29.56 Aligned_cols=43 Identities=37% Similarity=0.375 Sum_probs=34.6
Q ss_pred EEEEecCCChHHHHHHHHHHHcC---CeEEEE-eCChhhHHHH-HhCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALG---ATVIGT-VSTKEKAAQA-KDDGC 254 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~g---a~Vi~~-~~~~~~~~~~-~~~Ga 254 (256)
+|.|+| +|.+|.+.+.-....| .+|+.+ .+++++.+.+ +++|+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~ 48 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV 48 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc
Confidence 477888 7999999999999999 788855 8888887655 56664
No 272
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.13 E-value=2.6 Score=37.12 Aligned_cols=148 Identities=21% Similarity=0.084 Sum_probs=80.9
Q ss_pred CCeEEEEEeEEeeCh-hhhHhH-hCCCCCCCCCCCCC-cccEEEEEEe-CCCCCccCCCCEEEEeCCCC-----------
Q 036416 96 EGEIRVRNKAIGLNF-IDVYYR-KGVYKPAKMPFTPG-MEAVGEVVAV-GPGLTGRTVGDIIAYAGGAM----------- 160 (256)
Q Consensus 96 ~~eVlVkv~~~~i~~-~D~~~~-~g~~~~~~~p~~lG-~e~~G~V~~v-G~~v~~~~~Gd~V~~~~~~~----------- 160 (256)
-+||+|+..+..-.+ .|..+. .|..-.....-+++ .|.+=.|-+- -++..-|+.|+..+.+-+..
T Consensus 30 GheVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~~vw~~~dmvvKvKEP~~~EY~ylregqiLftyLHLA~~~~lt~~l~~ 109 (371)
T COG0686 30 GHEVLVETGAGAGSGFDDDDYEAAGAKIVATAAEVWAEADMVVKVKEPLPSEYPYLREGQILFTYLHLAASPELTEALLK 109 (371)
T ss_pred CcEEEEecCCcCCCCCChHHHHHcCCEEecCHHHhhcccceEEEecCCChhhhhhhcCCcEEEEEeeecCChHHHHHHHH
Confidence 468999988766533 343332 23211111112333 4444444331 12233488999888765321
Q ss_pred -ccee-eEEEecCCCeEECCCC-----CCHHHHhhhchhHHHHHHHHHHHc----------CCCCCCEEEEecCCChHHH
Q 036416 161 -GSYA-EEQILPANKVVPVPSS-----IDPVIAASIMLKGMTAQFLLRRCF----------KVEPGHTVLIQAAAGGVGS 223 (256)
Q Consensus 161 -G~~a-~~~~v~~~~~~~ip~~-----~~~~~aa~l~~~~~ta~~~l~~~~----------~~~~g~~VlI~ga~g~vG~ 223 (256)
|.-+ -|- .+..|++ -+..+.|.-......|++..+..+ ++.+ .+|.|+|+ |-+|.
T Consensus 110 ~gvtaIayE------TV~~~~g~lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~-~kv~iiGG-Gvvgt 181 (371)
T COG0686 110 SGVTAIAYE------TVQLPDGNLPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLP-AKVVVLGG-GVVGT 181 (371)
T ss_pred cCcceEEEE------EEEcCCCCCcccchHHHHhhhHHHHHHHHHHHhccCCceeEecCCCCCCC-ccEEEECC-ccccc
Confidence 1111 111 1222331 233444433334444555322221 1233 45777884 99999
Q ss_pred HHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 224 LLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 224 ~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
-++.+|..+||+|+..+.+.+|++.+..
T Consensus 182 naAkiA~glgA~Vtild~n~~rl~~ldd 209 (371)
T COG0686 182 NAAKIAIGLGADVTILDLNIDRLRQLDD 209 (371)
T ss_pred hHHHHHhccCCeeEEEecCHHHHhhhhH
Confidence 9999999999999999999999988865
No 273
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=87.10 E-value=2.8 Score=34.62 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=37.5
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~ 250 (256)
....+++|++||=.| .|.|..++.+++..+. +|++++.+++-.+.++
T Consensus 71 ~~l~~~~~~~VLDiG--~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~ 119 (215)
T TIGR00080 71 ELLELKPGMKVLEIG--TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119 (215)
T ss_pred HHhCCCCcCEEEEEC--CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 445789999999998 6678888888888654 6999999888776654
No 274
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=86.86 E-value=3.7 Score=32.62 Aligned_cols=57 Identities=21% Similarity=0.062 Sum_probs=38.2
Q ss_pred hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
.+|++..+.+..|....---.|++|+|.|.+..+|.-+..+....||.|+......+
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~ 71 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK 71 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC
Confidence 345555555666655422358999999998889999999999999999998776543
No 275
>PRK08198 threonine dehydratase; Provisional
Probab=86.85 E-value=2.5 Score=38.62 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=37.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.++.|+..+ +|..|++++..|+.+|.+.+++.. +..|.+.++.+||+
T Consensus 69 ~~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 118 (404)
T PRK08198 69 RARGVVAAS-AGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAE 118 (404)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 356666665 799999999999999997666654 46788899999985
No 276
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.81 E-value=1.9 Score=40.29 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+.+.+|+|+| +|+.|+.++..++..|.+|++++..
T Consensus 141 ~~~~~VvIIG-aGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVG-SGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHhCCCcEEEEecC
Confidence 4578999999 5999999999999999999998864
No 277
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.80 E-value=1.4 Score=42.91 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
..+++|+|+| +|+.|+.++..+...|.+|++++..+
T Consensus 191 ~~~k~VaIIG-aGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIG-AGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4578999999 59999999999999999999998754
No 278
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=86.80 E-value=4.9 Score=33.76 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=30.0
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|+|.| .|.+|..+++++...|++|+++..+
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999999 7999999999999999999966543
No 279
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=86.80 E-value=1.1 Score=39.81 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=31.0
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
|.+|.|+| .|.+|..+++.++..|++|++.+.
T Consensus 142 gkTvGIiG-~G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIG-LGRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEECC
Confidence 78999999 799999999999999999999998
No 280
>PRK13984 putative oxidoreductase; Provisional
Probab=86.79 E-value=1.9 Score=41.51 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=31.8
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.+.+++|+|.| +|+.|+.++..++..|.+|++++..
T Consensus 280 ~~~~~~v~IIG-aG~aGl~aA~~L~~~G~~v~vie~~ 315 (604)
T PRK13984 280 EKKNKKVAIVG-SGPAGLSAAYFLATMGYEVTVYESL 315 (604)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46789999999 6999999999999999999888754
No 281
>PRK07402 precorrin-6B methylase; Provisional
Probab=86.77 E-value=2.7 Score=34.13 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHH
Q 036416 200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~ 250 (256)
+.....++++++||=.| .|.|..++.+++.. +.+|++++.+++..+.++
T Consensus 32 l~~~l~~~~~~~VLDiG--~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~ 81 (196)
T PRK07402 32 LISQLRLEPDSVLWDIG--AGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR 81 (196)
T ss_pred HHHhcCCCCCCEEEEeC--CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 33445778899887776 56676777777664 579999999988777664
No 282
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=86.77 E-value=1.8 Score=40.61 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..+.+|+|+| +|..|+.++..++..|.+|++++..
T Consensus 141 ~~~~~V~IIG-aG~aGl~aA~~L~~~g~~V~v~e~~ 175 (485)
T TIGR01317 141 RTGKKVAVVG-SGPAGLAAADQLNRAGHTVTVFERE 175 (485)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEecC
Confidence 4578999999 5999999999999999999888754
No 283
>PRK06932 glycerate dehydrogenase; Provisional
Probab=86.68 E-value=1.2 Score=39.40 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus 146 ~gktvgIiG-~G~IG~~va~~l~~fg~~V~~~~~~ 179 (314)
T PRK06932 146 RGSTLGVFG-KGCLGTEVGRLAQALGMKVLYAEHK 179 (314)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhcCCCEEEEECCC
Confidence 478999999 7999999999999999999998764
No 284
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=86.59 E-value=5 Score=34.80 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=38.5
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.++|++|+. ..+|..|++++..|+.+|.+.+++.. ++.|++.++.+||+
T Consensus 50 ~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~ 101 (291)
T cd01561 50 LKPGTTIIE-PTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAE 101 (291)
T ss_pred CCCCCEEEE-eCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCE
Confidence 445666655 56899999999999999997666654 36788999999985
No 285
>PRK06487 glycerate dehydrogenase; Provisional
Probab=86.56 E-value=1.3 Score=39.25 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus 147 ~gktvgIiG-~G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 147 EGKTLGLLG-HGELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCC
Confidence 578999999 7999999999999999999998864
No 286
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=86.51 E-value=1.5 Score=40.09 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=36.5
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~ 246 (256)
+-..-+.|+|.||+|.+|+..++.++..|..|.+.+++.++.
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a 116 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKA 116 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhh
Confidence 345567899999999999999999999999999999986553
No 287
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.48 E-value=3.5 Score=33.87 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=37.3
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~ 250 (256)
....+++|++||=.| .|.|..++.+++..+ .+|++++.+++-.+.++
T Consensus 66 ~~l~~~~~~~VLDiG--~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~ 114 (205)
T PRK13944 66 ELIEPRPGMKILEVG--TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA 114 (205)
T ss_pred HhcCCCCCCEEEEEC--cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 445788999999998 567888888888774 58999999987665554
No 288
>PRK07048 serine/threonine dehydratase; Validated
Probab=86.26 E-value=2.9 Score=36.92 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=35.7
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+.|+..+ +|..|.+++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 73 ~~vv~aS-sGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAe 120 (321)
T PRK07048 73 AGVVTFS-SGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGE 120 (321)
T ss_pred CcEEEeC-CCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 3455555 799999999999999998766664 36688899999984
No 289
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.23 E-value=4.1 Score=35.49 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=30.9
Q ss_pred CCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCCh
Q 036416 206 VEPGHTVLIQAAAGG-VGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~-vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
--.|.+|+|.|+ |+ +|..++.++...|++|+++.+..
T Consensus 156 ~l~Gk~vvViG~-gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 156 ELAGKHAVVVGR-SAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 357899999995 65 99999999999999888777643
No 290
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.18 E-value=2.6 Score=32.51 Aligned_cols=36 Identities=33% Similarity=0.356 Sum_probs=30.5
Q ss_pred EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhH
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKA 246 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~ 246 (256)
+|.|+|++|.+|..++..+...+. ++..++..+++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~ 39 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA 39 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc
Confidence 689999889999999999988876 799999886653
No 291
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=85.95 E-value=4.2 Score=34.16 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=36.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+++.| |...+|..|.+++..|+..|.+++++.. ++.+.+.++.+|++
T Consensus 49 ~~~~v-v~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~ 98 (244)
T cd00640 49 PKGVI-IESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAE 98 (244)
T ss_pred CCCEE-EEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 35554 4454799999999999999998777765 46778888999974
No 292
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.86 E-value=1.6 Score=38.42 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..++++++..|++|++.+++
T Consensus 121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 121 YNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCC
Confidence 589999999 7999999999999999999999975
No 293
>PRK06381 threonine synthase; Validated
Probab=85.85 E-value=2.8 Score=36.93 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=37.3
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
|.+.+|.+.+|..|++++..|+..|.+.+++.. +..|.+.++.+||+
T Consensus 62 g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~ 111 (319)
T PRK06381 62 GYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAE 111 (319)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCE
Confidence 444566667899999999999999997666664 36788899999985
No 294
>PLN00203 glutamyl-tRNA reductase
Probab=85.85 E-value=2.7 Score=39.85 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=36.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHH-HhC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQA-KDD 252 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~-~~~ 252 (256)
.+.+|+|+| +|.+|.+++..+...|+ +|+++.++.++.+.+ .++
T Consensus 265 ~~kkVlVIG-AG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 265 ASARVLVIG-AGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCCEEEEEe-CHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 368899999 59999999999999998 699999998886655 345
No 295
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.75 E-value=2 Score=38.29 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=33.0
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK 245 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~ 245 (256)
.|.+|.|+| .|.+|..+++.++..|.+|++.+++++.
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNK 181 (330)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 567899999 7999999999999999999999987643
No 296
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=85.73 E-value=3.3 Score=36.59 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.++++|+..+ +|..|.+++..|+..|.+++++.. ++.|.+.++.+||+
T Consensus 49 ~~~~~vv~aS-sGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~ 99 (316)
T cd06448 49 NECVHVVCSS-GGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGAT 99 (316)
T ss_pred ccCCeEEEeC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 3467776666 799999999999999998666664 46788999999984
No 297
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=85.53 E-value=1.6 Score=40.02 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCCEEEEecC----------------CChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAA----------------AGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga----------------~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|||.|| +|.+|.++++.+...|++|+.++++
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 6899999998 6679999999999999999988765
No 298
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=85.52 E-value=4.8 Score=37.27 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=37.0
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+-+|.+.+|..|+.++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 153 ~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAe 200 (431)
T TIGR02035 153 YSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVT 200 (431)
T ss_pred ceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 3566667899999999999999997666654 47789999999985
No 299
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=85.50 E-value=2.4 Score=34.62 Aligned_cols=44 Identities=20% Similarity=0.030 Sum_probs=34.2
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
.+..++.+||-.| .|.|..+..+|+. |++|++++.+++-.+.++
T Consensus 26 l~~~~~~~vLDiG--cG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~ 69 (197)
T PRK11207 26 VKVVKPGKTLDLG--CGNGRNSLYLAAN-GFDVTAWDKNPMSIANLE 69 (197)
T ss_pred cccCCCCcEEEEC--CCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 3556778999998 4558888888874 889999999987665554
No 300
>PLN02256 arogenate dehydrogenase
Probab=85.26 E-value=3.7 Score=36.15 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
+..+-..+.+|.|+| .|.+|...+..++..|.+|+++++++. .+.++++|+
T Consensus 29 ~~~~~~~~~kI~IIG-~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv 79 (304)
T PLN02256 29 EELEKSRKLKIGIVG-FGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGV 79 (304)
T ss_pred HhhccCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCC
Confidence 333444667899999 699999988888888889999998764 455666665
No 301
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=85.10 E-value=2.5 Score=32.30 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=26.6
Q ss_pred EEEecCCChHHHHHHHHHHHcC--CeEEEEeCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALG--ATVIGTVST 242 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~ 242 (256)
|.|.|++|++|..++++.+... ++|++....
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~ 33 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG 33 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 6799999999999999999987 677777653
No 302
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.05 E-value=1.7 Score=38.37 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
.|.+|.|+| .|.+|..+++.++..|++|+++++..+
T Consensus 135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~ 170 (312)
T PRK15469 135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRK 170 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 678999999 799999999999999999999987543
No 303
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=84.79 E-value=1.8 Score=42.31 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChh
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKE 244 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~ 244 (256)
.+++.+|||.||+|-+|..+++.+... |.+|+++++.+.
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~ 351 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD 351 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence 367789999999999999999888765 689999987654
No 304
>PRK06608 threonine dehydratase; Provisional
Probab=84.66 E-value=4 Score=36.47 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=35.5
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
-+|...+|..|++++..|+..|.+.+++.. +++|.+.++.+||+
T Consensus 74 ~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~ 120 (338)
T PRK06608 74 KIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGE 120 (338)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 345556899999999999999997666554 47789999999985
No 305
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=84.56 E-value=4.9 Score=27.97 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=27.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~ 241 (256)
-.+.+++|.| +|.+|..+++.+...+ .++.+.++
T Consensus 21 ~~~~~v~i~G-~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLG-AGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4678999999 5999999999998884 46666543
No 306
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=84.36 E-value=4.4 Score=27.49 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=29.3
Q ss_pred CCCEEEEecCC-ChHHHHHHHHHHHcCCeEEEEeC
Q 036416 208 PGHTVLIQAAA-GGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 208 ~g~~VlI~ga~-g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
-++.+||+|++ .+...++.+.|+..|..++..-.
T Consensus 31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 36789999998 89999999999999998776544
No 307
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=84.20 E-value=2.8 Score=30.47 Aligned_cols=41 Identities=27% Similarity=0.252 Sum_probs=27.0
Q ss_pred EEEEEEeCCCCC----ccCCCCEEEEeCCCCcc-----eeeEEEecCCCeE
Q 036416 134 VGEVVAVGPGLT----GRTVGDIIAYAGGAMGS-----YAEEQILPANKVV 175 (256)
Q Consensus 134 ~G~V~~vG~~v~----~~~~Gd~V~~~~~~~G~-----~a~~~~v~~~~~~ 175 (256)
-|.|+++|++.. .+++||+|+.-.. .|. =.+|+++.++.++
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y-~Gtevk~dg~ey~i~~e~DIL 95 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLPEF-GGSSVKVEGEEFFLYNEDSLL 95 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEcCC-CCcEEEECCEEEEEEEhHHEE
Confidence 599999999854 3899999985322 222 1456666655443
No 308
>PRK08246 threonine dehydratase; Provisional
Probab=84.16 E-value=5.1 Score=35.28 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=36.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
++++|+..- +|..|++++..|+..|.+++++.. ++.|.+.++.+|++
T Consensus 67 ~~~~vv~aS-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 116 (310)
T PRK08246 67 PAAGVVAAS-GGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAE 116 (310)
T ss_pred cCCeEEEeC-CCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCE
Confidence 566665554 799999999999999997666654 36678899999985
No 309
>PRK08638 threonine dehydratase; Validated
Probab=84.15 E-value=4 Score=36.36 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=35.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+.|+..+ +|..|.+++..|+..|.+.+++.. ++.|.+.++.+||+
T Consensus 76 ~~vv~~S-sGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 123 (333)
T PRK08638 76 KGVVACS-AGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAE 123 (333)
T ss_pred CeEEEeC-CcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCE
Confidence 3455554 799999999999999997666654 36688899999984
No 310
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.14 E-value=7.2 Score=34.01 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=41.9
Q ss_pred hchhHHHHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 189 IMLKGMTAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
+|++..+....|... ++. .|.+|+|.|.+.-+|.-++.++...||.|++......
T Consensus 137 ~PcTp~avi~lL~~~-~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~ 192 (285)
T PRK14191 137 VPATPMGVMRLLKHY-HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK 192 (285)
T ss_pred CCCcHHHHHHHHHHh-CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH
Confidence 466666666666554 443 6999999997779999999999999999988765433
No 311
>PRK14968 putative methyltransferase; Provisional
Probab=84.07 E-value=3.1 Score=33.06 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=33.5
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
..++++||-.| .+.|..+..+++. +.+|++++.+++-.+.++
T Consensus 21 ~~~~~~vLd~G--~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~ 62 (188)
T PRK14968 21 DKKGDRVLEVG--TGSGIVAIVAAKN-GKKVVGVDINPYAVECAK 62 (188)
T ss_pred ccCCCEEEEEc--cccCHHHHHHHhh-cceEEEEECCHHHHHHHH
Confidence 36888999998 5667788888877 899999999987666553
No 312
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=84.02 E-value=5 Score=35.37 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+++|+.. .+|..|.+++..|+.+|.+++++.. ++.+.+.++.+||+
T Consensus 70 ~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~ 118 (324)
T cd01563 70 VKAVACA-STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGAT 118 (324)
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCE
Confidence 5566655 4799999999999999998776664 46788899999985
No 313
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.74 E-value=2.1 Score=39.32 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus 150 ~gktvGIiG-~G~IG~~vA~~~~~fGm~V~~~d~~ 183 (409)
T PRK11790 150 RGKTLGIVG-YGHIGTQLSVLAESLGMRVYFYDIE 183 (409)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCC
Confidence 578999999 7999999999999999999999975
No 314
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=83.59 E-value=7.1 Score=35.86 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=39.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHH-HHHhCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAA-QAKDDGC 254 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~-~~~~~Ga 254 (256)
-.+.+|||+| +|-+|..++.-....|. +|++.-++.+|.+ +++++|+
T Consensus 176 L~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~ 224 (414)
T COG0373 176 LKDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA 224 (414)
T ss_pred cccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence 3678999999 59999999999999996 7888888888754 6678885
No 315
>PRK09414 glutamate dehydrogenase; Provisional
Probab=83.58 E-value=4.7 Score=37.46 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=30.6
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
-.|.+|+|.| .|.||..+++++...|++|+++..
T Consensus 230 l~g~rVaIqG-fGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 230 FEGKRVVVSG-SGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence 3689999999 699999999999999999999844
No 316
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=83.18 E-value=3.2 Score=31.83 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=26.3
Q ss_pred HcCCCCCCEEEEecCCChHH--HHHHHHHHHcCCeEEEEe
Q 036416 203 CFKVEPGHTVLIQAAAGGVG--SLLCQWANALGATVIGTV 240 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG--~~ai~la~~~ga~Vi~~~ 240 (256)
..++++||.++++..+|... ..+++.||.+|++||+++
T Consensus 98 ~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 98 LYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 34689999999987666444 568999999999999876
No 317
>PRK12831 putative oxidoreductase; Provisional
Probab=83.13 E-value=3.5 Score=38.47 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
...|++|+|+| .|.+|+-++..+..+|++|+.+.+.
T Consensus 278 ~~~gk~VvVIG-gG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 278 IKVGKKVAVVG-GGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred ccCCCeEEEEC-CcHHHHHHHHHHHHcCCEEEEEeec
Confidence 46789999999 5999999999999999998888763
No 318
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.04 E-value=2.3 Score=32.30 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=27.4
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
..+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCc
Confidence 46899999 69999999999988999 67777764
No 319
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=82.94 E-value=4.8 Score=32.74 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=37.8
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHH----HhCCCC
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQA----KDDGCH 255 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~----~~~Ga~ 255 (256)
..+++|+.++=+| -+.|..++++|+.. ..+||+++++++..+.. ++||++
T Consensus 30 L~~~~g~~l~DIG--aGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 30 LRPRPGDRLWDIG--AGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD 84 (187)
T ss_pred hCCCCCCEEEEeC--CCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence 4789999887777 35677888999443 35999999998887665 457754
No 320
>PRK08328 hypothetical protein; Provisional
Probab=82.91 E-value=2.3 Score=35.77 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
.+.+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 346799999 79999999999999998 67777654
No 321
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=82.89 E-value=5.9 Score=33.59 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=40.4
Q ss_pred HHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHh
Q 036416 200 LRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~ 251 (256)
+......++|++||=.+ +|+|-.+..+++..| ++|+++|.+++-++.+++
T Consensus 43 ~i~~~~~~~g~~vLDva--~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~ 93 (238)
T COG2226 43 LISLLGIKPGDKVLDVA--CGTGDMALLLAKSVGTGEVVGLDISESMLEVARE 93 (238)
T ss_pred HHHhhCCCCCCEEEEec--CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHH
Confidence 33445667899998775 889999999999997 489999999988777653
No 322
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=82.77 E-value=2.6 Score=30.37 Aligned_cols=24 Identities=50% Similarity=0.797 Sum_probs=19.5
Q ss_pred cEEEEEEeCCCCC---------ccCCCCEEEEe
Q 036416 133 AVGEVVAVGPGLT---------GRTVGDIIAYA 156 (256)
Q Consensus 133 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 156 (256)
..|+|+++|++.. .+++||+|...
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 4799999999653 38999999864
No 323
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=82.75 E-value=5.2 Score=34.27 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=38.4
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
...+++++.+||=+| +| .|..+..+++..+++|++++.+++-.+.+++
T Consensus 46 ~~l~l~~~~~VLDiG-cG-~G~~a~~la~~~~~~v~giD~s~~~~~~a~~ 93 (263)
T PTZ00098 46 SDIELNENSKVLDIG-SG-LGGGCKYINEKYGAHVHGVDICEKMVNIAKL 93 (263)
T ss_pred HhCCCCCCCEEEEEc-CC-CChhhHHHHhhcCCEEEEEECCHHHHHHHHH
Confidence 445789999999998 34 5667778888778999999999887777765
No 324
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.71 E-value=3.7 Score=39.03 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCCCEEEEecCCChHHHH-HHHHHHHcCC-eEEEEeCChhhHHH
Q 036416 207 EPGHTVLIQAAAGGVGSL-LCQWANALGA-TVIGTVSTKEKAAQ 248 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~-ai~la~~~ga-~Vi~~~~~~~~~~~ 248 (256)
-.|++|||.||.|++|.- +-|+++. +. +++..++++.+...
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~~E~~~~~ 290 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKF-NPKEIILFSRDEYKLYL 290 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecCchHHHHH
Confidence 468999999999999975 5566665 55 78888888776543
No 325
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.53 E-value=3.9 Score=37.65 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=38.5
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~ 252 (256)
...+++|.| .|.+|..+++.+...|.+|++++.++++.+.+++.
T Consensus 230 ~~~~iiIiG-~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 230 PVKRVMIVG-GGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 468899999 59999999999999999999999999888777653
No 326
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=82.47 E-value=2.6 Score=38.26 Aligned_cols=35 Identities=29% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
-.|.+|.|+| .|.+|..+++.++..|++|++.+..
T Consensus 114 L~gktvGIIG-~G~IG~~vA~~l~a~G~~V~~~dp~ 148 (378)
T PRK15438 114 LHDRTVGIVG-VGNVGRRLQARLEALGIKTLLCDPP 148 (378)
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCc
Confidence 3789999999 7999999999999999999999853
No 327
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=82.45 E-value=2.7 Score=28.04 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=24.6
Q ss_pred EecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 214 IQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 214 I~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
|+| +|..|++++..++..|.+|.+.+..+
T Consensus 1 IiG-aG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIG-AGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES--SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEe-eCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 678 59999999999998999999998764
No 328
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.41 E-value=2.6 Score=34.67 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=29.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
...+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 457799999 79999999999999998 78888865
No 329
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=82.40 E-value=4 Score=36.36 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-hHHHHHhCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE-KAAQAKDDGC 254 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~-~~~~~~~~Ga 254 (256)
.|.+|.|+| .|.+|.+.++-++..|.+|++..+... ..+.+++.|+
T Consensus 16 ~gktIgIIG-~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~ 62 (330)
T PRK05479 16 KGKKVAIIG-YGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGF 62 (330)
T ss_pred CCCEEEEEe-eHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCC
Confidence 578899999 799999999999999999888766533 3455566665
No 330
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.20 E-value=7.6 Score=34.06 Aligned_cols=55 Identities=24% Similarity=0.208 Sum_probs=42.2
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CCh
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV-STK 243 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~-~~~ 243 (256)
+|++..+.+..|....---.|.+|+|+|-++.+|.-++.++...|+.|++.. ++.
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~ 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence 4666666666665542224799999999899999999999999999999985 443
No 331
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=82.17 E-value=3.5 Score=35.06 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=29.4
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGT 239 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~ 239 (256)
-.|.+|+|.| .|.+|..+++.+...|++|+++
T Consensus 30 l~g~~v~IqG-fG~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 30 LEGKRVAIQG-FGNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp STTCEEEEEE-SSHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEE
Confidence 3689999999 6999999999999999998888
No 332
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.05 E-value=6.2 Score=34.40 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=40.9
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
+|++..+....|... ++ -.|.+|+|.|.+.-+|.-+..++...|++|+...+..
T Consensus 138 ~PcTp~aii~lL~~~-~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t 192 (285)
T PRK14189 138 RPCTPYGVMKMLESI-GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT 192 (285)
T ss_pred cCCCHHHHHHHHHHc-CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC
Confidence 455655555555544 33 4799999999877779999999999999998876543
No 333
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=82.05 E-value=4.4 Score=37.60 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
...|++|+|+| .|.+|+-++..+..+|++|+.+.+.
T Consensus 269 ~~~gk~VvVIG-gG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 269 VYAGKSVVVIG-GGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHcCCEEEEEeec
Confidence 35789999999 5999999999999999998888764
No 334
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=81.86 E-value=2.8 Score=35.55 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.0
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
+.+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus 24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46799999 69999999999999998 67777654
No 335
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=81.44 E-value=6.4 Score=35.62 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=34.2
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|++++..|+.+|.+.+++.. +..|.+.++.+||+
T Consensus 51 vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 96 (380)
T TIGR01127 51 VVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAE 96 (380)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCE
Confidence 44445799999999999999997666554 35788999999985
No 336
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=81.24 E-value=5.6 Score=33.91 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=35.1
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~ 250 (256)
..++++||++|+=.| .|.|.++..+++..|- +|+..+..+++.+.++
T Consensus 34 ~~l~i~pG~~VlEaG--tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~ 82 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAG--TGSGSLTHALARAVGPTGHVYTYEFREDRAEKAR 82 (247)
T ss_dssp HHTT--TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred HHcCCCCCCEEEEec--CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHH
Confidence 446899999998887 6678899999998874 8999999998887664
No 337
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=81.06 E-value=5 Score=36.51 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
-.|.+|.|+| .|.+|..+++.++..|.+|++.+..
T Consensus 114 l~gktvGIIG-~G~IG~~va~~l~a~G~~V~~~Dp~ 148 (381)
T PRK00257 114 LAERTYGVVG-AGHVGGRLVRVLRGLGWKVLVCDPP 148 (381)
T ss_pred cCcCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCc
Confidence 3689999999 7999999999999999999999864
No 338
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=81.05 E-value=3.7 Score=36.43 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHH-HcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWAN-ALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~-~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++ ..|++|+..++.
T Consensus 144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~~~~~~ 178 (323)
T PRK15409 144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPILYNARR 178 (323)
T ss_pred CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEEEECCC
Confidence 578999999 7999999999998 899999988865
No 339
>PRK06721 threonine synthase; Reviewed
Probab=80.80 E-value=6 Score=35.50 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=36.2
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC----ChhhHHHHHhCCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS----TKEKAAQAKDDGCH 255 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~----~~~~~~~~~~~Ga~ 255 (256)
|...+|...+|..|.+++..|+..|.+++++.. ++.|.+.++.+||+
T Consensus 74 g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~ 124 (352)
T PRK06721 74 GSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAE 124 (352)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCE
Confidence 334455555899999999999999998666664 24688889999985
No 340
>PRK12831 putative oxidoreductase; Provisional
Probab=80.71 E-value=3.1 Score=38.78 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=31.0
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
...+..|+|+| +|+.|+.++..++..|.+|++++..
T Consensus 137 ~~~~~~V~IIG-~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 137 EKKGKKVAVIG-SGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEecC
Confidence 35688999999 5999999999999999999888753
No 341
>PRK02991 D-serine dehydratase; Provisional
Probab=80.67 E-value=12 Score=34.80 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=36.1
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.+|...+|..|++++..|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 159 ~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAe 205 (441)
T PRK02991 159 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVT 205 (441)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 456666899999999999999997665554 47789999999985
No 342
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=80.60 E-value=6.5 Score=31.94 Aligned_cols=44 Identities=25% Similarity=0.058 Sum_probs=33.3
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHH
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~ 250 (256)
.++++++||-.| .|.|..++.+++.. +++|++++.+++..+.++
T Consensus 42 ~l~~g~~VLDiG--cGtG~~al~la~~~~~~~V~giD~s~~~l~~A~ 86 (187)
T PRK00107 42 YLPGGERVLDVG--SGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR 86 (187)
T ss_pred hcCCCCeEEEEc--CCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH
Confidence 355689999998 45677777777654 679999999988776664
No 343
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=80.46 E-value=4.8 Score=32.76 Aligned_cols=45 Identities=16% Similarity=-0.034 Sum_probs=34.0
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
.....++.+||-.| .|.|..+..+++ .|.+|+++|.+++-.+.++
T Consensus 25 ~~~~~~~~~vLDiG--cG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 25 AVKTVAPCKTLDLG--CGQGRNSLYLSL-AGYDVRAWDHNPASIASVL 69 (195)
T ss_pred HhccCCCCcEEEeC--CCCCHHHHHHHH-CCCeEEEEECCHHHHHHHH
Confidence 33455567899988 577888888887 5889999999987665543
No 344
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=80.19 E-value=7.4 Score=34.38 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=34.6
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~ 115 (317)
T TIGR02991 70 VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAE 115 (317)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCE
Confidence 44555899999999999999998666654 35688899999985
No 345
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=80.14 E-value=3.9 Score=38.90 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.2
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
-.|+|.| +|++|++++..+...|.+|.+++..+
T Consensus 24 ~dVlIVG-aGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVG-AGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCEEEEC-CCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3599999 59999999888888999999988654
No 346
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.09 E-value=4.4 Score=38.52 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=31.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus 137 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 137 YGKTLGVIG-LGRIGSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCC
Confidence 578999999 7999999999999999999999974
No 347
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.99 E-value=9.6 Score=33.50 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=42.4
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
+|++..+....|....---.|.+|.|+|.++-+|.-++.++...|++|++..+...
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence 46666666666655422247999999997679999999999999999999966533
No 348
>PRK07476 eutB threonine dehydratase; Provisional
Probab=79.82 E-value=7.3 Score=34.44 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=34.5
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|.+++..|+..|.+++++.. ++.|.+.++.+||+
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~ 115 (322)
T PRK07476 70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAE 115 (322)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence 34445899999999999999998666654 36688899999985
No 349
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=79.82 E-value=4.9 Score=28.71 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=26.9
Q ss_pred cEEEEEEeCCCCC----ccCCCCEEEEeCCCCcc-----eeeEEEecCCCeE
Q 036416 133 AVGEVVAVGPGLT----GRTVGDIIAYAGGAMGS-----YAEEQILPANKVV 175 (256)
Q Consensus 133 ~~G~V~~vG~~v~----~~~~Gd~V~~~~~~~G~-----~a~~~~v~~~~~~ 175 (256)
..|+|+++|++.. .+++||+|..... .|. =.+|+.++.+.++
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~y-~g~ev~~~~~~y~iv~e~DIL 86 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIFSKY-AGTEIKIDDEDYIIIDVNDIL 86 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEEccC-CCeEEEECCEEEEEEEhHhEE
Confidence 4699999997643 4899999986432 221 1356666654443
No 350
>PLN02306 hydroxypyruvate reductase
Probab=79.57 E-value=3.3 Score=37.72 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=30.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHH-HcCCeEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWAN-ALGATVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~-~~ga~Vi~~~~~~ 243 (256)
.|.+|.|+| .|.+|..+++.++ ..|++|++.++..
T Consensus 164 ~gktvGIiG-~G~IG~~vA~~l~~~fGm~V~~~d~~~ 199 (386)
T PLN02306 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 478999999 7999999999975 8899999999764
No 351
>PRK08813 threonine dehydratase; Provisional
Probab=79.51 E-value=9.7 Score=34.24 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=34.7
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|++++..|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 84 VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAe 129 (349)
T PRK08813 84 VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGAT 129 (349)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 55666899999999999999987555553 46788999999984
No 352
>PRK07334 threonine dehydratase; Provisional
Probab=79.28 E-value=6.5 Score=35.96 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=35.1
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.|+.. .+|..|.+++..|+..|.+.+++.. ++.|.+.++.+||+
T Consensus 73 ~vv~a-SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 119 (403)
T PRK07334 73 GVIAM-SAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAE 119 (403)
T ss_pred cEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 35444 4899999999999999997666664 46788999999985
No 353
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=79.26 E-value=5.5 Score=38.10 Aligned_cols=52 Identities=23% Similarity=0.135 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHH--HHHHHHHcCCeEEEEeCC
Q 036416 190 MLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSL--LCQWANALGATVIGTVST 242 (256)
Q Consensus 190 ~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~--ai~la~~~ga~Vi~~~~~ 242 (256)
-..+.|...++.....+..|+++.|.|+ .++|-- ..+++|...++|++.+..
T Consensus 207 ~~PL~TG~RvID~lfPi~kGqr~~I~gg-~G~GKT~l~~~lak~s~aDviVyvg~ 260 (591)
T TIGR01042 207 NTPLLTGQRVLDALFPCVQGGTTAIPGA-FGCGKTVISQSLSKYSNSDAIVYVGC 260 (591)
T ss_pred CCccccchhhhhhccchhcCCeEEEEcC-CCcCHHHHHHHHHhccCcCEEEEEEE
Confidence 4467788888887788899999999995 677744 445677667765555543
No 354
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.26 E-value=4.8 Score=38.25 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|.|+| .|.+|..+++.++..|++|++.++.
T Consensus 139 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~ 172 (526)
T PRK13581 139 YGKTLGIIG-LGRIGSEVAKRAKAFGMKVIAYDPY 172 (526)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCC
Confidence 478999999 7999999999999999999999975
No 355
>PRK08639 threonine dehydratase; Validated
Probab=79.23 E-value=7.2 Score=35.92 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=35.2
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+.|+.. .+|..|+.++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 74 ~~Vv~a-SsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~ 121 (420)
T PRK08639 74 AGVVCA-SAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGE 121 (420)
T ss_pred CEEEEE-CccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 445544 4899999999999999997666654 35688899999985
No 356
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=79.03 E-value=6.7 Score=31.33 Aligned_cols=60 Identities=22% Similarity=0.096 Sum_probs=35.2
Q ss_pred hhchhHHHHHHHHHH-----HcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHH
Q 036416 188 SIMLKGMTAQFLLRR-----CFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~-----~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~ 250 (256)
.++.+..-+.+.... ......+.+||=.| +| +|+..+.+|+.. +++|+++|..+ -.+.++
T Consensus 20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELG-aG-~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~ 85 (173)
T PF10294_consen 20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELG-AG-TGLPGIAAAKLFGAARVVLTDYNE-VLELLR 85 (173)
T ss_dssp ---HHHHHHHHHHH-------GGGTTTSEEEETT--T-TSHHHHHHHHT-T-SEEEEEE-S--HHHHHH
T ss_pred EechHHHHHHHHHHhcccccchhhcCCceEEEEC-Cc-cchhHHHHHhccCCceEEEeccch-hhHHHH
Confidence 345555555555543 23467889999999 45 787777777774 45899999876 455443
No 357
>PRK06153 hypothetical protein; Provisional
Probab=78.99 E-value=3 Score=37.90 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=28.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
.+.+|+|.| +||+|..+++.+...|. +++.+|.+
T Consensus 175 ~~~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999 79999999999988998 67777764
No 358
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=78.72 E-value=12 Score=29.90 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~ 250 (256)
....+.++++||=.| .|.|..++.+++.. +.+|++++.+++..+.++
T Consensus 25 ~~l~~~~~~~vLDiG--~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~ 72 (187)
T PRK08287 25 SKLELHRAKHLIDVG--AGTGSVSIEAALQFPSLQVTAIERNPDALRLIK 72 (187)
T ss_pred HhcCCCCCCEEEEEC--CcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 344677889988887 44588888888775 469999999988776664
No 359
>PRK00811 spermidine synthase; Provisional
Probab=78.71 E-value=4.5 Score=35.13 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=34.4
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~ 251 (256)
...++||++| ||.|..+..+++..+. +|.+++.+++-.+.+++
T Consensus 75 ~~p~~VL~iG--~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~ 118 (283)
T PRK00811 75 PNPKRVLIIG--GGDGGTLREVLKHPSVEKITLVEIDERVVEVCRK 118 (283)
T ss_pred CCCCEEEEEe--cCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHH
Confidence 3567899999 5668888888887665 89999999888887775
No 360
>PRK07409 threonine synthase; Validated
Probab=78.69 E-value=7.9 Score=34.68 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=34.7
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeCC----hhhHHHHHhCCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVST----KEKAAQAKDDGCH 255 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~----~~~~~~~~~~Ga~ 255 (256)
..+|...+|..|.+++..|+..|.+++++... +.|.+.++.+||+
T Consensus 79 ~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~ 127 (353)
T PRK07409 79 KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAE 127 (353)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCE
Confidence 34555568999999999999999975555542 4688888999985
No 361
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.55 E-value=4.1 Score=35.17 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
.+.+|+|.| .|++|..++..+...|. +++.+|.+
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457899999 69999999999999996 78888764
No 362
>PLN02244 tocopherol O-methyltransferase
Probab=78.26 E-value=6.9 Score=34.93 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=35.2
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
+++++||=+| .|.|..+..+++..|++|++++.+++..+.+++
T Consensus 117 ~~~~~VLDiG--CG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~ 159 (340)
T PLN02244 117 KRPKRIVDVG--CGIGGSSRYLARKYGANVKGITLSPVQAARANA 159 (340)
T ss_pred CCCCeEEEec--CCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 7889999888 566778889998889999999999876665543
No 363
>PLN00016 RNA-binding protein; Provisional
Probab=78.14 E-value=3 Score=37.59 Aligned_cols=38 Identities=24% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCCEEEEe----cCCChHHHHHHHHHHHcCCeEEEEeCChhh
Q 036416 208 PGHTVLIQ----AAAGGVGSLLCQWANALGATVIGTVSTKEK 245 (256)
Q Consensus 208 ~g~~VlI~----ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~ 245 (256)
...+|||. ||+|-+|..++..+...|.+|+++++.+.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34679999 999999999999888889999999987543
No 364
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=78.09 E-value=8.5 Score=31.72 Aligned_cols=46 Identities=33% Similarity=0.467 Sum_probs=36.7
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~ 251 (256)
....++.+|+-.| +|. |..+..+++..+ .++++++.+++..+.+++
T Consensus 47 ~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 94 (239)
T PRK00216 47 LGVRPGDKVLDLA-CGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE 94 (239)
T ss_pred hCCCCCCeEEEeC-CCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Confidence 3456788999998 565 888889988875 799999998877776654
No 365
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.98 E-value=13 Score=32.49 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=42.4
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
+|++..+....|... ++ -.|.+|+|.|.+.-+|.-+..++...||+|+.......
T Consensus 138 ~PcTp~av~~lL~~~-~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~ 193 (284)
T PRK14190 138 LPCTPHGILELLKEY-NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK 193 (284)
T ss_pred CCCCHHHHHHHHHHc-CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch
Confidence 456656666566554 43 47999999999999999999999999999998765433
No 366
>PRK06815 hypothetical protein; Provisional
Probab=77.95 E-value=9.4 Score=33.66 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=34.5
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 71 vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~ 116 (317)
T PRK06815 71 VITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAE 116 (317)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 45556899999999999999997666664 35688899999985
No 367
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.92 E-value=3.2 Score=37.64 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=28.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
-.|+|.| +|..|++++..+...|.+|.++++.+
T Consensus 19 ~dV~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVG-GGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred cCEEEEC-cCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3599999 59999999988888999999998654
No 368
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.88 E-value=5.2 Score=36.25 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
.+.+|+|.| +|++|..++..+...|. +++.++.+
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456799999 69999999999999999 68888775
No 369
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.81 E-value=11 Score=32.86 Aligned_cols=55 Identities=18% Similarity=0.056 Sum_probs=42.3
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
+|++..+.+..+... ++ -.|.+|+|.|-+.-+|.-+..++...||+|++..+.-.
T Consensus 139 ~PcTp~av~~ll~~~-~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~ 194 (285)
T PRK10792 139 RPCTPRGIMTLLERY-GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK 194 (285)
T ss_pred CCCCHHHHHHHHHHc-CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC
Confidence 466666666666554 44 36999999997777999999999999999998876543
No 370
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=77.79 E-value=4.9 Score=34.14 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
...+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus 31 ~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVG-LGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 347899999 69999999999999998 67777654
No 371
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=77.68 E-value=4.6 Score=33.79 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
..+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus 21 ~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999 79999999999999998 67666543
No 372
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=77.64 E-value=11 Score=31.93 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=39.5
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
......++++||=.| +|.|..+..+++.. +++|++++.++.-.+.+++.++
T Consensus 23 ~~l~~~~~~~vLDlG--cG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~ 74 (255)
T PRK14103 23 ARVGAERARRVVDLG--CGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGV 74 (255)
T ss_pred HhCCCCCCCEEEEEc--CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCC
Confidence 444667889999998 44588888888875 6799999999888887776543
No 373
>PRK08223 hypothetical protein; Validated
Probab=77.48 E-value=4.3 Score=35.45 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=28.4
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
...+|+|.| +|++|..+++.+...|. ++..+|.+
T Consensus 26 ~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 356799999 69999999999999998 67777654
No 374
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=77.36 E-value=9 Score=34.75 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+.++++|+|.| .|.+|+-++..++..|.+|+.+...
T Consensus 141 ~~~~~~vvViG-gG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 141 LQPERSVVIVG-AGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred hhcCCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Confidence 45788999999 5999999888888899999888753
No 375
>PRK06141 ornithine cyclodeaminase; Validated
Probab=77.31 E-value=16 Score=32.23 Aligned_cols=42 Identities=19% Similarity=0.091 Sum_probs=32.2
Q ss_pred CCCCEEEEecCCChHHHHHHHHHH-HcCC-eEEEEeCChhhHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWAN-ALGA-TVIGTVSTKEKAAQA 249 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~-~~ga-~Vi~~~~~~~~~~~~ 249 (256)
....+|+|+| +|..|...+.... ..+. +|++..+++++.+.+
T Consensus 123 ~~~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~ 166 (314)
T PRK06141 123 KDASRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL 166 (314)
T ss_pred CCCceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 4578899999 7999999886444 3564 799999998875533
No 376
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.28 E-value=4.5 Score=36.06 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=31.3
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.+.+.+|+|+| +|..|+.++..++..|.+|+.++..
T Consensus 15 ~~~~~~VvIIG-~G~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 15 PPTGKKVAIIG-AGPAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45678999999 5999999999988899999988875
No 377
>PRK06352 threonine synthase; Validated
Probab=77.26 E-value=10 Score=34.01 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=34.2
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeC----ChhhHHHHHhCCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVS----TKEKAAQAKDDGCH 255 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~----~~~~~~~~~~~Ga~ 255 (256)
-+|...+|..|.+++..|+.+|.+++++.. +.+|.+.++.+||+
T Consensus 77 ~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~ 124 (351)
T PRK06352 77 AVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGAD 124 (351)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCE
Confidence 455545899999999999999987555552 36688889999985
No 378
>PLN03075 nicotianamine synthase; Provisional
Probab=77.06 E-value=11 Score=33.02 Aligned_cols=43 Identities=9% Similarity=-0.068 Sum_probs=36.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~ 251 (256)
++++|+=+| +|+.|+.++-+++.+ +.+++.+|.+++..+.+++
T Consensus 123 ~p~~VldIG-cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~ 167 (296)
T PLN03075 123 VPTKVAFVG-SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARR 167 (296)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 779999999 899999888888765 4579999999988877765
No 379
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=77.04 E-value=3.6 Score=41.94 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=31.0
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..|.+|+|+| +|+.|+.++..+...|.+|++.+..
T Consensus 304 ~~gkkVaVIG-sGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVG-SGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 3589999999 6999999999999999999988864
No 380
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=77.03 E-value=11 Score=30.77 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=34.0
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
...+++++++||=.| .|.|..+..+++.. .+|++++.+++..+.++
T Consensus 72 ~~l~~~~~~~VLeiG--~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~ 117 (212)
T PRK00312 72 ELLELKPGDRVLEIG--TGSGYQAAVLAHLV-RRVFSVERIKTLQWEAK 117 (212)
T ss_pred HhcCCCCCCEEEEEC--CCccHHHHHHHHHh-CEEEEEeCCHHHHHHHH
Confidence 345788999999998 44566666666654 58999999877666554
No 381
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=76.88 E-value=5.2 Score=29.79 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=26.2
Q ss_pred EEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChh
Q 036416 211 TVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKE 244 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~ 244 (256)
+|.|+||+|-+|..+++++... .++++.+..+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 5899999999999999998876 456666555433
No 382
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=76.58 E-value=7.4 Score=32.43 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=34.2
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
.+.++.+||+.| .|.|.-++-+|. .|++|++++.++.-++.+
T Consensus 34 ~~~~~~rvL~~g--CG~G~da~~LA~-~G~~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 34 ALPAGSRVLVPL--CGKSLDMLWLAE-QGHEVLGVELSELAVEQF 75 (218)
T ss_pred CCCCCCeEEEeC--CCChHhHHHHHh-CCCeEEEEccCHHHHHHH
Confidence 446778999998 677888888885 799999999998766643
No 383
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=76.56 E-value=5.3 Score=32.85 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=28.8
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
..+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus 21 ~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICG-LGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46799999 69999999999999999 68888876
No 384
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=76.46 E-value=4.3 Score=34.74 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=26.9
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|+|.| +|+.|++++..+...|.+|++++..
T Consensus 27 DVvIVG-gGpAGl~AA~~la~~G~~V~liEk~ 57 (257)
T PRK04176 27 DVAIVG-AGPSGLTAAYYLAKAGLKVAVFERK 57 (257)
T ss_pred CEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Confidence 399999 5999999888888899999999865
No 385
>PTZ00188 adrenodoxin reductase; Provisional
Probab=76.38 E-value=5.2 Score=37.69 Aligned_cols=36 Identities=17% Similarity=-0.003 Sum_probs=29.0
Q ss_pred CCCCEEEEecCCChHHHHHHH-HHHHcCCeEEEEeCCh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQ-WANALGATVIGTVSTK 243 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~-la~~~ga~Vi~~~~~~ 243 (256)
..+.+|+|+| +|+.|+.++. +++..|.+|.+.+..+
T Consensus 37 ~~~krVAIVG-aGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 37 AKPFKVGIIG-AGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3467899999 6999999877 7777788888877654
No 386
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=76.38 E-value=7.3 Score=33.04 Aligned_cols=42 Identities=29% Similarity=0.238 Sum_probs=34.0
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
.++.+||=.| +|.|..+..+++. |.+|++++.+++..+.+++
T Consensus 43 ~~~~~vLDiG--cG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~ 84 (255)
T PRK11036 43 PRPLRVLDAG--GGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQ 84 (255)
T ss_pred CCCCEEEEeC--CCchHHHHHHHHc-CCEEEEEECCHHHHHHHHH
Confidence 4567888887 6778888888875 8899999999888777654
No 387
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.35 E-value=14 Score=32.17 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=43.3
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~ 246 (256)
+|++..+.+..|... ++ -.|.+|+|.|-+.-+|.-+..++...||+|+...+....+
T Consensus 138 ~PcTp~av~~lL~~~-~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l 195 (278)
T PRK14172 138 LPCTPNSVITLIKSL-NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNL 195 (278)
T ss_pred cCCCHHHHHHHHHHh-CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence 466666666666554 43 4799999999999999999999999999998887543333
No 388
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.02 E-value=5.5 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
...+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 346799999 69999999999999998 58888775
No 389
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=75.93 E-value=3.7 Score=33.97 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhhHHHHHh
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANAL--GATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~--ga~Vi~~~~~~~~~~~~~~ 251 (256)
+.....+||-+| ..+|..++.+|+.+ +.+|+.++.++++.+.+++
T Consensus 42 ~~~~~k~vLEIG--t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~ 88 (205)
T PF01596_consen 42 RLTRPKRVLEIG--TFTGYSALWLAEALPEDGKITTIEIDPERAEIARE 88 (205)
T ss_dssp HHHT-SEEEEES--TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHH
T ss_pred HhcCCceEEEec--cccccHHHHHHHhhcccceEEEecCcHHHHHHHHH
Confidence 445567899999 78899999999886 5799999999998877743
No 390
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=75.91 E-value=5.5 Score=35.07 Aligned_cols=50 Identities=26% Similarity=0.155 Sum_probs=43.9
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCCC
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGCH 255 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga~ 255 (256)
.-.++.++++.| .|-.|+.++..++..|+-|...+....+.+..+++|+.
T Consensus 160 gtv~pA~vlv~G-~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~ 209 (356)
T COG3288 160 GTVSPAKVLVIG-AGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAK 209 (356)
T ss_pred ccccchhhhhhh-HHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccc
Confidence 345678899999 59999999999999999999999998888888888874
No 391
>PRK05638 threonine synthase; Validated
Probab=75.87 E-value=10 Score=35.17 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=35.6
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..+|...+|..|.+++..|+..|.+++++.. ++.|.+.++.+||+
T Consensus 113 ~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~ 160 (442)
T PRK05638 113 NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAK 160 (442)
T ss_pred CEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcE
Confidence 3445566899999999999999997666654 36788899999985
No 392
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=75.77 E-value=5.2 Score=37.13 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=30.3
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..+.+|+|+| +|+.|+.++..++..|.+|++++..
T Consensus 131 ~~~~~V~IIG-~G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIG-AGPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCcEEEEecC
Confidence 3578899999 5999999999999999999988864
No 393
>PRK08329 threonine synthase; Validated
Probab=75.75 E-value=13 Score=33.19 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=35.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
++|+... +|..|.+++..|+..|.+++++.. ++.|++.++.+||+
T Consensus 105 ~~vv~aS-sGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~ 152 (347)
T PRK08329 105 NEVVIDS-SGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAE 152 (347)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCE
Confidence 4555544 899999999999999997666654 35688899999985
No 394
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.66 E-value=5.3 Score=35.70 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=28.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
.+.+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus 23 ~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVG-AGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 346799999 69999999999999998 67777775
No 395
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=75.64 E-value=4.5 Score=29.90 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=30.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~ 246 (256)
++|||.| .|.++.-+++-++.+|.+.+++..++++.
T Consensus 3 kkvLIan-rGeia~r~~ra~r~~Gi~tv~v~s~~d~~ 38 (110)
T PF00289_consen 3 KKVLIAN-RGEIAVRIIRALRELGIETVAVNSNPDTV 38 (110)
T ss_dssp SEEEESS--HHHHHHHHHHHHHTTSEEEEEEEGGGTT
T ss_pred CEEEEEC-CCHHHHHHHHHHHHhCCcceeccCchhcc
Confidence 5799999 79999999999999999988888877653
No 396
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=75.57 E-value=4.5 Score=34.55 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=27.9
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|+|.| +|+.|++++..+...|.+|+++++..
T Consensus 23 DVvIVG-gGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 23 DVIIVG-AGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 389999 59999999999988999999998763
No 397
>PRK08197 threonine synthase; Validated
Probab=75.54 E-value=7 Score=35.63 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=36.9
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
|...+|...+|..|.+++..|+..|.+++++.. ++.|.+.++.+||+
T Consensus 126 g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~ 175 (394)
T PRK08197 126 GVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAE 175 (394)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCE
Confidence 334555566899999999999999997666663 46788899999985
No 398
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=75.52 E-value=9.6 Score=35.33 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=36.4
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh--------hhHHHHHhCCC
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTK--------EKAAQAKDDGC 254 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~--------~~~~~~~~~Ga 254 (256)
.+..|++|+|+| .|.+|+-++..+...|+ +|+.+.+.+ ...+.+++.|+
T Consensus 269 ~~~~g~~VvViG-gG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV 326 (457)
T PRK11749 269 DLPVGKRVVVIG-GGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGV 326 (457)
T ss_pred cCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCC
Confidence 345799999999 59999988888888898 788887532 22455566665
No 399
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.40 E-value=14 Score=32.29 Aligned_cols=54 Identities=17% Similarity=0.059 Sum_probs=41.7
Q ss_pred hchhHHHHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 189 IMLKGMTAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
+|++..+.+..+... ++. .|.+|+|.|-+.-+|.-+..++...||+|++....-
T Consensus 144 ~PcTp~av~~ll~~~-~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T 198 (287)
T PRK14176 144 VPCTPHGVIRALEEY-GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT 198 (287)
T ss_pred CCCcHHHHHHHHHHc-CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC
Confidence 466666666666554 443 799999999777799999999999999998877543
No 400
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.01 E-value=12 Score=27.14 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=42.2
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHhCCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKDDGCHH 256 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~~Ga~~ 256 (256)
..+++..-+.+++.-..-..-+.++..++.++ .++++...+++..+.++++|+|+
T Consensus 56 ~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 56 ERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADH 112 (116)
T ss_dssp HHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SE
T ss_pred hhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCE
Confidence 33567767778887656666778888888754 48999999999999999999984
No 401
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=75.00 E-value=12 Score=31.46 Aligned_cols=34 Identities=18% Similarity=0.002 Sum_probs=28.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|.+|||.|| |.++.-=+..+...||+|+++...
T Consensus 24 ~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5789999995 999988788888899998888764
No 402
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=74.90 E-value=3.9 Score=29.29 Aligned_cols=25 Identities=44% Similarity=0.706 Sum_probs=20.2
Q ss_pred cEEEEEEeCCCC---------CccCCCCEEEEeC
Q 036416 133 AVGEVVAVGPGL---------TGRTVGDIIAYAG 157 (256)
Q Consensus 133 ~~G~V~~vG~~v---------~~~~~Gd~V~~~~ 157 (256)
..|+|+++|++. ..+++||+|....
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 579999999984 3599999998543
No 403
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.84 E-value=15 Score=31.99 Aligned_cols=54 Identities=19% Similarity=0.023 Sum_probs=42.3
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+|++..+.+..|....---.|.+|+|.|.+.-+|.-+..++...||+|+...+.
T Consensus 138 ~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~ 191 (282)
T PRK14180 138 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF 191 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC
Confidence 466666666666655333479999999999999999999999999999887654
No 404
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=74.84 E-value=5.1 Score=34.06 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=27.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVS 241 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~ 241 (256)
...+|+|.| .|+||.+++..+...|. ++..+|.
T Consensus 29 ~~~~V~VvG-iGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 29 KQAHVCVVG-IGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred hhCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEec
Confidence 347899999 69999999999999998 6666664
No 405
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.74 E-value=6 Score=35.57 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=28.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
...+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 347899999 69999999999999998 67777764
No 406
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=74.62 E-value=7.9 Score=31.24 Aligned_cols=36 Identities=36% Similarity=0.602 Sum_probs=30.1
Q ss_pred CCCCCCEEEEec---CCChHHHHHHHHHHHcCCeEEEEe
Q 036416 205 KVEPGHTVLIQA---AAGGVGSLLCQWANALGATVIGTV 240 (256)
Q Consensus 205 ~~~~g~~VlI~g---a~g~vG~~ai~la~~~ga~Vi~~~ 240 (256)
.+++|++|||.. ++|++-.+++++....|++|..+.
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~ 150 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAA 150 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEE
Confidence 456999999983 589999999999999999766554
No 407
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=74.54 E-value=6.9 Score=34.02 Aligned_cols=53 Identities=25% Similarity=0.257 Sum_probs=40.1
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCe--EEEEe-CChhhHHHHHhCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGAT--VIGTV-STKEKAAQAKDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~--Vi~~~-~~~~~~~~~~~~Ga~ 255 (256)
+.+++-+| ..++-|-+|.+|...+.+|+++|++ |+.-+ .+.+|.+.++.+||+
T Consensus 93 e~GkL~~g-g~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~ 148 (391)
T KOG1481|consen 93 EKGKLVRG-GTVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAE 148 (391)
T ss_pred HcCCcccC-ceEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcce
Confidence 34567788 4566787899999999999999985 33322 346788999999985
No 408
>PRK06382 threonine dehydratase; Provisional
Probab=74.50 E-value=12 Score=34.21 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=33.5
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|++++..|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 76 vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~ 121 (406)
T PRK06382 76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAH 121 (406)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCE
Confidence 44445799999999999999987555553 25778889999984
No 409
>PLN02823 spermine synthase
Probab=74.44 E-value=41 Score=30.08 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=33.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHhC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~~ 252 (256)
..++|||.| ||-|..+.++++..+. +|++++.+++-.+.++++
T Consensus 103 ~pk~VLiiG--gG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~ 146 (336)
T PLN02823 103 NPKTVFIMG--GGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKH 146 (336)
T ss_pred CCCEEEEEC--CCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence 457899999 5667777788886655 799999998888888764
No 410
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=74.36 E-value=8.2 Score=35.04 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=36.5
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
..-+|...+|..|++++..|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 94 ~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAe 142 (376)
T TIGR01747 94 QATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAE 142 (376)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 44566666899999999999999997555554 35788899999985
No 411
>PRK08605 D-lactate dehydrogenase; Validated
Probab=74.35 E-value=5.8 Score=35.33 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCCEEEEecCCChHHHHHHHHH-HHcCCeEEEEeCChh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWA-NALGATVIGTVSTKE 244 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la-~~~ga~Vi~~~~~~~ 244 (256)
.|.+|.|+| .|.+|..+++.+ +..|++|++.+.+..
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~~d~~~~ 181 (332)
T PRK08605 145 KDLKVAVIG-TGRIGLAVAKIFAKGYGSDVVAYDPFPN 181 (332)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 478999999 699999988887 667899999987643
No 412
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.34 E-value=16 Score=31.77 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=42.5
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
+|++..+.+..+....---.|.+|+|.|-+.-+|.-+..++...||+|+...+.-.
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~ 194 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ 194 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 45555555555554422347999999999999999999999999999998875433
No 413
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=74.32 E-value=4.6 Score=38.11 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=27.3
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
|+|+| +|..|++++.-|...|++|++++..+
T Consensus 64 VvVVG-~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 64 IVIVG-AGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 99999 59999999888888999999988653
No 414
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.17 E-value=14 Score=32.27 Aligned_cols=52 Identities=23% Similarity=0.138 Sum_probs=40.6
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
+|++..+....|... ++ -.|.+|.|.|.++-+|.-++.++...|++|++...
T Consensus 138 ~PcTp~avi~lL~~~-~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s 190 (284)
T PRK14179 138 IPCTPAGIMEMFREY-NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS 190 (284)
T ss_pred cCCCHHHHHHHHHHh-CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC
Confidence 456666666566554 43 47999999998899999999999999999988743
No 415
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=74.00 E-value=5.7 Score=40.54 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..|.+|+|.| +|+.|+.++..+...|.+|++++..
T Consensus 381 ~tgKKVaVVG-aGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTG-LGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhCCCeEEEEccc
Confidence 4688999999 5999999999999999999999974
No 416
>PRK07340 ornithine cyclodeaminase; Validated
Probab=73.95 E-value=23 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHH-cCC-eEEEEeCChhhHH-HHHhC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANA-LGA-TVIGTVSTKEKAA-QAKDD 252 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~-~ga-~Vi~~~~~~~~~~-~~~~~ 252 (256)
....+++|+| +|..|.+.++.+.. .+. +|.+..+++++.+ ++.++
T Consensus 123 ~~~~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~ 170 (304)
T PRK07340 123 APPGDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHA 170 (304)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 4567899999 69999998888764 566 6888899887755 33443
No 417
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.90 E-value=6.4 Score=35.21 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=28.8
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
..+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus 24 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46799999 69999999999999999 78888875
No 418
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=73.90 E-value=6.2 Score=35.76 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
...+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456799999 69999999999999998 78877765
No 419
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=73.90 E-value=5.4 Score=40.88 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=30.9
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..|++|+|+| +|+.|+.++..++..|.+|++++..
T Consensus 537 ~tgKkVaIIG-gGPAGLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIG-AGPAGLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHcCCeEEEEecc
Confidence 4578999999 5999999999999999999988864
No 420
>PLN02712 arogenate dehydrogenase
Probab=73.69 E-value=9.8 Score=37.32 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=36.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
.+.+|.|+| .|.+|...+...+..|.+|++++++++. +.++++|+
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv 412 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGV 412 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCC
Confidence 467899999 7999999988888889999999987543 55666775
No 421
>PRK08618 ornithine cyclodeaminase; Validated
Probab=73.59 E-value=20 Score=31.71 Aligned_cols=41 Identities=22% Similarity=0.076 Sum_probs=30.9
Q ss_pred CCCCEEEEecCCChHHHHHHHHH-HHcCC-eEEEEeCChhhHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWA-NALGA-TVIGTVSTKEKAAQ 248 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la-~~~ga-~Vi~~~~~~~~~~~ 248 (256)
+...+++|+| +|..|...+... ...++ +|.++.+++++.+.
T Consensus 125 ~~~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~ 167 (325)
T PRK08618 125 EDAKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYA 167 (325)
T ss_pred CCCcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence 4567899999 799998776544 45677 68888888877653
No 422
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=73.58 E-value=5.4 Score=39.05 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.++..+|+|.| +|..|++++..++..|.+|.++++.+
T Consensus 78 ~~~~~~VlIVG-gGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAG-GGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEEC-CCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 36677899999 49999999999999999999998753
No 423
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=73.28 E-value=5.9 Score=38.47 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.3
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVS 241 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~ 241 (256)
...+|||.| +|++|..+++.+...|. +++.+|.
T Consensus 337 ~~~kVLIvG-aGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 337 SQLKVLLLG-AGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred hcCeEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 367899999 69999999999999999 5777764
No 424
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=73.18 E-value=6.8 Score=35.79 Aligned_cols=36 Identities=33% Similarity=0.344 Sum_probs=30.4
Q ss_pred CCCCEEEEecCC----------------ChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAA----------------GGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~----------------g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
-.|.+|||.||. |.+|.+.++.+..+|++|+.+.+.
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 468999999973 359999999999999999987754
No 425
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=73.17 E-value=16 Score=31.19 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=39.1
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA--TVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga--~Vi~~~~~~~~~~~~~ 250 (256)
...++.+|++|+=.| .|.|.+++.||+..|. +|+..+..++..+.++
T Consensus 88 ~~~gi~pg~rVlEAG--tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~ 136 (256)
T COG2519 88 ARLGISPGSRVLEAG--TGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136 (256)
T ss_pred HHcCCCCCCEEEEcc--cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHH
Confidence 346899999998877 6779999999998875 8999999888877664
No 426
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=73.15 E-value=13 Score=33.94 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=33.3
Q ss_pred CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC---h---hhHHHHHhCCCC
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALGATVIGTVST---K---EKAAQAKDDGCH 255 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~---~---~~~~~~~~~Ga~ 255 (256)
+.+++..++|..|++++..|+.+|.+++++... + .+.+.++.+||+
T Consensus 99 ~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~ 150 (385)
T TIGR00263 99 KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAK 150 (385)
T ss_pred CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCE
Confidence 456664447999999999999999875555432 1 345678999985
No 427
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=73.13 E-value=18 Score=28.53 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=36.7
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
+..++.++++||=.| +| .|..+..+++. +.+|++++.+++-.+.+++
T Consensus 7 ~~~~~~~~~~vLEiG-~G-~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~ 53 (169)
T smart00650 7 RAANLRPGDTVLEIG-PG-KGALTEELLER-AARVTAIEIDPRLAPRLRE 53 (169)
T ss_pred HhcCCCCcCEEEEEC-CC-ccHHHHHHHhc-CCeEEEEECCHHHHHHHHH
Confidence 445778889998888 34 68888888876 7899999999877776654
No 428
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=72.98 E-value=9 Score=33.10 Aligned_cols=47 Identities=32% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC---hhhHHHHHhCCCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST---KEKAAQAKDDGCH 255 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~---~~~~~~~~~~Ga~ 255 (256)
..+.| |.+.+|..|.+++..|+..|.+++++... +.+++.++.+|++
T Consensus 55 ~~~~v-v~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~ 104 (306)
T PF00291_consen 55 GGRTV-VGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAE 104 (306)
T ss_dssp TTSEE-EEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCE
T ss_pred cccee-eeeccCCceehhhhhhhhccccceeeeccccccccccceeeecce
Confidence 44556 66668999999999999999986666643 4577888999984
No 429
>PRK07121 hypothetical protein; Validated
Probab=72.86 E-value=5.6 Score=37.26 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=26.8
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
|+|+| +|..|++++.-|...|++|++++..+
T Consensus 23 VvVVG-aG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 23 VVVVG-FGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 99999 59999988888888899999988653
No 430
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=72.83 E-value=10 Score=38.86 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.|++|+|+|+ |.+|+-++..++..|++|+.+.+.
T Consensus 446 ~Gk~VvVIGG-G~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 446 KGKEVFVIGG-GNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEec
Confidence 6899999994 999999999999999998888754
No 431
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=72.79 E-value=17 Score=30.54 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~ 252 (256)
...++++||-+| ||. |..+..+++ .|.+|+++|.+++.++.+++.
T Consensus 39 ~~~~~~~vLDiG-cG~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 39 PQRKFTHVLDAG-CGP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred CccCCCeEEEee-CCC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhh
Confidence 344678899998 454 776666655 588999999999888877654
No 432
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=72.78 E-value=8.6 Score=33.81 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=39.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhh-HHHHHhCCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEK-AAQAKDDGCH 255 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~-~~~~~~~Ga~ 255 (256)
=.|.+|.|+| .|+-|.+-.+-.|..|.+|++--+.... .+.+++-|++
T Consensus 16 LkgK~iaIIG-YGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~ 64 (338)
T COG0059 16 LKGKKVAIIG-YGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK 64 (338)
T ss_pred hcCCeEEEEe-cChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE
Confidence 4678999999 8999999999999999998777765544 6677777753
No 433
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.72 E-value=17 Score=31.73 Aligned_cols=55 Identities=20% Similarity=0.116 Sum_probs=42.0
Q ss_pred hchhHHHHHHHHHHHcCCC-CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 189 IMLKGMTAQFLLRRCFKVE-PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~-~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
+|++..+....|... ++. .|.+|+|.|.+.-+|.-+..++...||+|+...+...
T Consensus 135 ~PcTp~avi~lL~~~-~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~ 190 (287)
T PRK14173 135 EPCTPAGVVRLLKHY-GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ 190 (287)
T ss_pred CCCCHHHHHHHHHHc-CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC
Confidence 455555555555543 443 7999999999999999999999999999987765433
No 434
>PLN02852 ferredoxin-NADP+ reductase
Probab=72.66 E-value=6.5 Score=37.05 Aligned_cols=36 Identities=17% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHH--cCCeEEEEeCCh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANA--LGATVIGTVSTK 243 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~--~ga~Vi~~~~~~ 243 (256)
..+.+|+|+| +|+.|+.++..+.. .|.+|.+++..+
T Consensus 24 ~~~~~VaIVG-aGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVG-SGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEEC-ccHHHHHHHHHHHhhCCCCeEEEEecCC
No 435
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=72.63 E-value=6.4 Score=36.49 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..+.+|+|+| +|+.|+.++..+...|.+|++++..
T Consensus 138 ~~~~~VvIIG-gGpaGl~aA~~l~~~g~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIG-AGPAGLTAAHRLARKGYDVTIFEAR 172 (457)
T ss_pred cCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccC
Confidence 4578899999 5999999999888899999988764
No 436
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=72.58 E-value=7.6 Score=34.96 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhH
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKA 246 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~ 246 (256)
+-.|+.++|.| -|-+|.-+++.++.+||+|+++.-++-+.
T Consensus 206 liaGK~vVV~G-YG~vGrG~A~~~rg~GA~ViVtEvDPI~A 245 (420)
T COG0499 206 LLAGKNVVVAG-YGWVGRGIAMRLRGMGARVIVTEVDPIRA 245 (420)
T ss_pred eecCceEEEec-ccccchHHHHHhhcCCCeEEEEecCchHH
Confidence 46899999999 89999999999999999999999887553
No 437
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=72.51 E-value=16 Score=30.00 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=40.7
Q ss_pred hchhHHHHHHHHHHHcCC----------CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe
Q 036416 189 IMLKGMTAQFLLRRCFKV----------EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTV 240 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~----------~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~ 240 (256)
+|++..+.+..|... ++ -.|++|+|.|-+.-+|.-+..++...||+|+..+
T Consensus 33 ~PCTp~avi~lL~~~-~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~ 93 (197)
T cd01079 33 LPCTPLAIVKILEFL-GIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD 93 (197)
T ss_pred cCCCHHHHHHHHHHh-CCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence 466666666666543 33 4799999999999999999999999999999874
No 438
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=72.47 E-value=13 Score=31.48 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHh
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~ 251 (256)
....++++++||=+| .|.|..+..+++.. +++|++++.+++-.+.+++
T Consensus 25 ~~~~~~~~~~vLDiG--cG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~ 73 (258)
T PRK01683 25 ARVPLENPRYVVDLG--CGPGNSTELLVERWPAARITGIDSSPAMLAEARS 73 (258)
T ss_pred hhCCCcCCCEEEEEc--ccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 334667889999998 45678888888876 5799999999887777654
No 439
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=72.06 E-value=6.8 Score=38.92 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=30.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
..+.+|+|+| +|+.|+.++..+...|.+|++++..
T Consensus 429 ~~~~~V~IIG-aGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIG-SGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4578999999 5999999999999999999988863
No 440
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=71.99 E-value=8.8 Score=34.62 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=33.2
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh------hhHHHHHhCCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTK------EKAAQAKDDGCH 255 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~------~~~~~~~~~Ga~ 255 (256)
.+++..++|..|.+++..|+.+|.+++++.... .+.+.++.+||+
T Consensus 84 ~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAe 134 (365)
T cd06446 84 RVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAE 134 (365)
T ss_pred eEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCE
Confidence 455544479999999999999999766665421 356778999985
No 441
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=71.96 E-value=11 Score=31.17 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=33.8
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHH
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQA 249 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~ 249 (256)
..++.+||+.| .|.|.-++-+|. .|.+|++++.++.-++.+
T Consensus 32 ~~~~~rvLd~G--CG~G~da~~LA~-~G~~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 32 LPAGARVFVPL--CGKSLDLAWLAE-QGHRVLGVELSEIAVEQF 72 (213)
T ss_pred CCCCCeEEEeC--CCchhHHHHHHh-CCCeEEEEeCCHHHHHHH
Confidence 35778999998 567888888885 799999999998866653
No 442
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.92 E-value=18 Score=31.71 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=42.1
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
+|++..+....|....---.|.+|+|.|-+.-+|.-+..++...+|+|+...+.-
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT 194 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC
Confidence 4555555555665542234799999999999999999999999999999877643
No 443
>PRK01581 speE spermidine synthase; Validated
Probab=71.91 E-value=13 Score=33.76 Aligned_cols=43 Identities=21% Similarity=0.044 Sum_probs=34.2
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~ 251 (256)
....+|||.| ||.|.++..+++.-+ .+|++++.+++-.+.+++
T Consensus 149 ~~PkrVLIIG--gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 149 IDPKRVLILG--GGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 3446899999 667878888887654 489999999888888886
No 444
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=71.87 E-value=6.5 Score=40.37 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
.+.+|+|+| +|+.|+.++..++..|.+|++++..
T Consensus 536 ~~kkVaIIG-GGPAGLSAA~~LAr~G~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIG-AGPAGLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEecc
Confidence 467899999 5999999999999999999998864
No 445
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=71.85 E-value=18 Score=31.75 Aligned_cols=56 Identities=18% Similarity=-0.003 Sum_probs=43.0
Q ss_pred hhchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 188 SIMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.+|++..+.+..|....---.|.+|+|.|-+.-+|.-+..++...||+|+...+..
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T 201 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT 201 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 34666666666665542223699999999999999999999999999999887643
No 446
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=71.85 E-value=11 Score=35.11 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=37.1
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
...++++++||=.| +| .|..++.+++..|++|++++.+++-.+.+++
T Consensus 261 ~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 261 KLDLKPGQKVLDVG-CG-IGGGDFYMAENFDVHVVGIDLSVNMISFALE 307 (475)
T ss_pred hcCCCCCCEEEEEe-cc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 34567889999998 44 4777888888889999999999877776653
No 447
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=71.82 E-value=7.8 Score=34.22 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=36.1
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC----hhhHHHHHhCCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVST----KEKAAQAKDDGCH 255 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~----~~~~~~~~~~Ga~ 255 (256)
|...+|...+|..|.+++..|+..|.+++++... ++|.+.++.+||+
T Consensus 70 g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~ 120 (328)
T TIGR00260 70 GNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAE 120 (328)
T ss_pred CCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcE
Confidence 3445666668999999999999999976666543 5677888889975
No 448
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=71.73 E-value=22 Score=32.23 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
..+|.|+||.|.+|...+..++..|..|+++++++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 47899999889999999999999999999988753
No 449
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=71.73 E-value=7.8 Score=31.74 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.5
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
..+|+|.| +|++|..++.-+-..|. +++.+|.+
T Consensus 19 ~s~VlviG-~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIG-AGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 36799999 69999999999999999 57777654
No 450
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.71 E-value=21 Score=31.05 Aligned_cols=58 Identities=19% Similarity=0.095 Sum_probs=44.2
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHH
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAA 247 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~ 247 (256)
+|++..+.+..+... ++ -.|.+|+|.|-+.-+|.-+..+....|++|+...+....++
T Consensus 132 ~PcTp~av~~ll~~~-~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~ 190 (279)
T PRK14178 132 APCTPNGIMTLLHEY-KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK 190 (279)
T ss_pred CCCCHHHHHHHHHHc-CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH
Confidence 456666666666554 43 47999999998779999999999999999998887655443
No 451
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=71.62 E-value=11 Score=31.64 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=40.8
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHH----hCCCC
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAK----DDGCH 255 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~----~~Ga~ 255 (256)
.++.....+||=+| +++|..++.+|..+. .+++.++.++++.+.++ +.|++
T Consensus 54 L~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~ 110 (219)
T COG4122 54 LARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD 110 (219)
T ss_pred HHHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 34566788899998 788999999999886 48999999999987775 45654
No 452
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=71.52 E-value=17 Score=33.45 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=34.6
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|++++..|+..|.+.+++.. ++.|.+.++.+||+
T Consensus 67 vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~ 112 (409)
T TIGR02079 67 VVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGE 112 (409)
T ss_pred EEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCC
Confidence 45555899999999999999997666554 36788899999985
No 453
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=71.38 E-value=16 Score=30.12 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~ 250 (256)
....+++|++||=.| .|.|..+..+++..+ .+|++++.+++..+.++
T Consensus 39 ~~l~~~~~~~vLDiG--cG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 39 KRMNVQAGTSALDVC--CGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HhcCCCCCCEEEEeC--CCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 345678899999888 566778888888764 58999999987766664
No 454
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=71.28 E-value=12 Score=34.13 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=34.9
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|...+|..|++++..|+.+|.+++++.. ++.|.+.++.+||+
T Consensus 119 vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~ 164 (399)
T PRK08206 119 FATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAE 164 (399)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCE
Confidence 45556899999999999999997666664 46788889999985
No 455
>PRK07591 threonine synthase; Validated
Probab=71.27 E-value=9.9 Score=35.03 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=35.3
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.+|.+.+|..|.+++..|+..|.+++++.. ++.|...++.+||+
T Consensus 139 ~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~ 185 (421)
T PRK07591 139 TVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPT 185 (421)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 446667999999999999999987655554 35788889999985
No 456
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=71.14 E-value=7.1 Score=34.48 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVS 241 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~ 241 (256)
.++.|+|.| +|++|.+++..+...|+ ++-.++-
T Consensus 73 ~~syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 73 TNSYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred cCcEEEEEe-cCchhHHHHHHHHHhcCceEEEech
Confidence 578899999 69999999999999999 5555554
No 457
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=71.04 E-value=15 Score=31.47 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=36.2
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHH
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~ 250 (256)
...++++++||=.| .|.|..+..+++..+ .+|+++|.+++-++.++
T Consensus 68 ~~~~~~~~~VLDlG--cGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~ 115 (261)
T PLN02233 68 WSGAKMGDRVLDLC--CGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA 115 (261)
T ss_pred HhCCCCCCEEEEEC--CcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 34678899999998 455677788888765 58999999988777765
No 458
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.99 E-value=23 Score=30.90 Aligned_cols=54 Identities=22% Similarity=0.063 Sum_probs=41.3
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+|++..+.+..|....---.|.+|+|.|-+.-+|.-+..++...||+|+...+.
T Consensus 136 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~ 189 (282)
T PRK14169 136 VASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK 189 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC
Confidence 456666666666554222479999999999999999999999999999877544
No 459
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=70.93 E-value=15 Score=31.35 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHh
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~ 251 (256)
...++.++++|+=.| .|.|.++..+++. +.+|++++.+++-.+.+++
T Consensus 23 ~~~~~~~~~~VLEIG--~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 23 EYAEDTDGDPVLEIG--PGKGALTDELAKR-AKKVYAIELDPRLAEFLRD 69 (258)
T ss_pred HhcCCCCcCeEEEEe--CccCHHHHHHHHh-CCEEEEEECCHHHHHHHHH
Confidence 345678899999998 6778888888887 6799999998876766654
No 460
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.87 E-value=22 Score=30.91 Aligned_cols=54 Identities=20% Similarity=0.083 Sum_probs=41.9
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+|++..+.+..|....---.|.+|+|.|-+.-+|.-+..++...+|+|+...+.
T Consensus 137 ~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~ 190 (282)
T PRK14166 137 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK 190 (282)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 466666666666554222479999999999999999999999999999877654
No 461
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=70.60 E-value=28 Score=30.83 Aligned_cols=41 Identities=20% Similarity=0.032 Sum_probs=32.1
Q ss_pred CCCCEEEEecCCChHHHHHHHHHH-HcCC-eEEEEeCChhhHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWAN-ALGA-TVIGTVSTKEKAAQ 248 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~-~~ga-~Vi~~~~~~~~~~~ 248 (256)
+...+++|+| +|+.+.+.+..+. ..+. +|.+..++.+|.+.
T Consensus 127 ~~~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~ 169 (326)
T TIGR02992 127 EDSSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEA 169 (326)
T ss_pred CCCcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHH
Confidence 4567899999 6999988777775 4676 68899999887653
No 462
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.46 E-value=7.2 Score=36.86 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=30.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
+..+|+|+| +|..|++|+.-+...|.+|++....+
T Consensus 14 ~~~~VIVIG-AGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 14 KKKKVIVIG-AGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCCcEEEEC-CcHHHHHHHHHHHHcCCceEEEeccC
Confidence 445799999 59999999999999999999887653
No 463
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=70.29 E-value=8.8 Score=33.92 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=32.1
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+.|||+||+.- .|--|+-++.+++.+|++|-.+..+
T Consensus 89 lePgd~vLv~~-~G~wg~ra~D~~~r~ga~V~~v~~~ 124 (385)
T KOG2862|consen 89 LEPGDNVLVVS-TGTWGQRAADCARRYGAEVDVVEAD 124 (385)
T ss_pred cCCCCeEEEEE-echHHHHHHHHHHhhCceeeEEecC
Confidence 67999999987 8999999999999999988877654
No 464
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=70.18 E-value=13 Score=31.33 Aligned_cols=48 Identities=19% Similarity=0.009 Sum_probs=37.0
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~ 251 (256)
...+..++++||=.| .++|..++.+++..+ .+|+.++.+++..+.+++
T Consensus 62 ~l~~~~~~~~vLEiG--t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~ 111 (234)
T PLN02781 62 MLVKIMNAKNTLEIG--VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLE 111 (234)
T ss_pred HHHHHhCCCEEEEec--CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 344667788999998 677888888888763 589999999888776653
No 465
>PRK04457 spermidine synthase; Provisional
Probab=70.09 E-value=15 Score=31.54 Aligned_cols=44 Identities=18% Similarity=0.063 Sum_probs=35.6
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhhHHHHHhC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANAL-GATVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~-ga~Vi~~~~~~~~~~~~~~~ 252 (256)
.++.+||++| +|.|..+..+++.. +++|++++.+++-.+.++++
T Consensus 65 ~~~~~vL~IG--~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~ 109 (262)
T PRK04457 65 PRPQHILQIG--LGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNH 109 (262)
T ss_pred CCCCEEEEEC--CCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH
Confidence 4567899999 44588888888877 56999999999888888763
No 466
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.08 E-value=22 Score=31.27 Aligned_cols=54 Identities=22% Similarity=0.086 Sum_probs=41.2
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|++..+....|... ++ -.|.+|+|.|-+.-+|.-+..++...||+|+...+..
T Consensus 138 ~PcTp~aii~lL~~~-~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T 192 (297)
T PRK14186 138 RSCTPAGVMRLLRSQ-QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT 192 (297)
T ss_pred CCCCHHHHHHHHHHh-CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence 355555555555544 44 3799999999999999999999999999998886543
No 467
>PRK06450 threonine synthase; Validated
Probab=70.03 E-value=19 Score=32.12 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.-+|...+|..|.+++..|+..|.+.+++.. ++.|.+.++.+||+
T Consensus 98 ~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~ 145 (338)
T PRK06450 98 KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAE 145 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE
Confidence 3445555899999999999999987555553 46788999999985
No 468
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=69.85 E-value=4.6 Score=37.56 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=27.4
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
-.|++|+|+| .|.+|.+.+.-++..|.+|++..+
T Consensus 34 LkgKtIaIIG-yGSqG~AqAlNLrdSGvnVvvglr 67 (487)
T PRK05225 34 LKGKKIVIVG-CGAQGLNQGLNMRDSGLDISYALR 67 (487)
T ss_pred hCCCEEEEEc-cCHHHHHHhCCCccccceeEEecc
Confidence 4689999999 899999777777778888874433
No 469
>PLN02366 spermidine synthase
Probab=69.83 E-value=11 Score=33.28 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=33.0
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhhHHHHHh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~~~~~~~~~~ 251 (256)
...++|||.| ||-|..+..+++.-+. +|.+++.+++-.+.+++
T Consensus 90 ~~pkrVLiIG--gG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~ 133 (308)
T PLN02366 90 PNPKKVLVVG--GGDGGVLREIARHSSVEQIDICEIDKMVIDVSKK 133 (308)
T ss_pred CCCCeEEEEc--CCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 4578999999 4447778888887664 78899988776777766
No 470
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=69.69 E-value=8.8 Score=30.78 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=25.7
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKE 244 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~ 244 (256)
-+|++|+|.| +|..+.-++..+...|.+|..+.+++-
T Consensus 165 ~~~k~V~VVG-~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 165 FKGKRVVVVG-GGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp CTTSEEEEE---SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred cCCCcEEEEc-ChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3579999999 477776666666666789999998764
No 471
>PLN02569 threonine synthase
Probab=69.62 E-value=25 Score=33.13 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=34.3
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeCC----hhhHHHHHhCCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVST----KEKAAQAKDDGCH 255 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~----~~~~~~~~~~Ga~ 255 (256)
.+|...+|..|.++...|+..|.+++++... ..|+..++.+||+
T Consensus 189 ~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~ 236 (484)
T PLN02569 189 GVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGAL 236 (484)
T ss_pred EEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCE
Confidence 3454558999999999999999976666543 2688899999974
No 472
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=69.49 E-value=9 Score=31.37 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=27.5
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
..+|+|.| +|++|.-++..+-..|. ++..+|.+
T Consensus 21 ~s~VlIiG-~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 21 SARILLIG-LKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCcEEEEc-CCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46799999 69999999999999999 56666653
No 473
>PRK07411 hypothetical protein; Validated
Probab=69.28 E-value=8.1 Score=35.26 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=28.0
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
..+|+|.| +|++|..+++.+...|. +++.+|.+
T Consensus 38 ~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred cCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46799999 79999999999999999 57777654
No 474
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=69.22 E-value=20 Score=33.02 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=34.0
Q ss_pred cCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHH
Q 036416 204 FKVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 204 ~~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~ 250 (256)
.++++|++||=.| .+.|..++++++..+ .+|++++.++++++.++
T Consensus 234 L~~~~g~~VLDlc--ag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~ 279 (426)
T TIGR00563 234 LAPQNEETILDAC--AAPGGKTTHILELAPQAQVVALDIHEHRLKRVY 279 (426)
T ss_pred hCCCCCCeEEEeC--CCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4678999887776 455666667777665 79999999999877663
No 475
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=69.05 E-value=8.1 Score=35.26 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGA-TVIGTVST 242 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga-~Vi~~~~~ 242 (256)
...+|+|.| +|++|..++..+...|. +++.+|.+
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 346799999 79999999999999998 67777654
No 476
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=69.05 E-value=15 Score=31.89 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhC
Q 036416 199 LLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDD 252 (256)
Q Consensus 199 ~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~ 252 (256)
.+.+.+.++++|.||=.| .|+|.++..+.. .|++|+++..++.=.+.+.+.
T Consensus 49 ~I~~ka~~k~tD~VLEvG--PGTGnLT~~lLe-~~kkVvA~E~Dprmvael~kr 99 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVG--PGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKR 99 (315)
T ss_pred HHHhccCCCCCCEEEEeC--CCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHH
Confidence 344668999999999998 677877776654 578999999987666666553
No 477
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.97 E-value=24 Score=30.80 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=41.7
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
+|++..+....|... ++ -.|.+|+|.|-+.-+|.-+..++...||+|+...+.-
T Consensus 137 ~PcTp~avi~lL~~~-~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T 191 (284)
T PRK14170 137 VPCTPAGIIELIKST-GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT 191 (284)
T ss_pred CCCCHHHHHHHHHHh-CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 466666666556544 44 4699999999999999999999999999998776543
No 478
>PLN02712 arogenate dehydrogenase
Probab=68.65 E-value=15 Score=35.97 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 209 GHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 209 g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
..+|.|+| .|.+|...+..++..|.+|+++++++.+ +.++++|+
T Consensus 52 ~~kIgIIG-~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv 95 (667)
T PLN02712 52 QLKIAIIG-FGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGV 95 (667)
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCC
Confidence 35799999 7999999888888889999999987544 55777775
No 479
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=68.60 E-value=26 Score=28.48 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=36.4
Q ss_pred cCCCCCCEEEEec---CCChHHHHHHHHHHHcCCeE----EEEeCChhhHHHHHhCCC
Q 036416 204 FKVEPGHTVLIQA---AAGGVGSLLCQWANALGATV----IGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 204 ~~~~~g~~VlI~g---a~g~vG~~ai~la~~~ga~V----i~~~~~~~~~~~~~~~Ga 254 (256)
..+.+|++|+|.. .+|+.=..++++++..|++| +.+++.+.-.+.++++|.
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi 174 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADV 174 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCC
Confidence 3567999999874 37888899999999999863 334444433556667774
No 480
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.53 E-value=26 Score=30.48 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=39.2
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVS 241 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~ 241 (256)
+|++..+....|... ++ -.|.+|+|.|.+.-+|.-...+....||.|+...+
T Consensus 137 ~PcTp~avi~lL~~~-~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs 189 (281)
T PRK14183 137 VPCTPLGVMELLEEY-EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI 189 (281)
T ss_pred CCCcHHHHHHHHHHc-CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 455555555555544 44 47999999998889999999999999999985543
No 481
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.33 E-value=27 Score=30.51 Aligned_cols=58 Identities=21% Similarity=0.074 Sum_probs=43.2
Q ss_pred hchhHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHH----cCCeEEEEeCChhhH
Q 036416 189 IMLKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANA----LGATVIGTVSTKEKA 246 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~----~ga~Vi~~~~~~~~~ 246 (256)
+|++..+.+..|....---.|++|+|.|-+.-+|.-...++.. .+|+|+........+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l 198 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDL 198 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhH
Confidence 4666666666665542224799999999999999999999988 789998887654433
No 482
>PRK08291 ectoine utilization protein EutC; Validated
Probab=68.28 E-value=37 Score=30.10 Aligned_cols=42 Identities=17% Similarity=0.002 Sum_probs=31.9
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHH-cCC-eEEEEeCChhhHHHH
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANA-LGA-TVIGTVSTKEKAAQA 249 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~-~ga-~Vi~~~~~~~~~~~~ 249 (256)
+...+++|+| +|+.|.+.+..... .+. +|.+..+++++.+.+
T Consensus 130 ~~~~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l 173 (330)
T PRK08291 130 EDASRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAY 173 (330)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 4457899999 69999987776664 565 788889988876544
No 483
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=68.26 E-value=7.5 Score=36.13 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=28.2
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|+|.| +|+.|.+++..+...|.+|..++...
T Consensus 41 DViIVG-aGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 41 RVAVIG-GGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred eEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 499999 59999999988888999999999764
No 484
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=68.21 E-value=13 Score=33.95 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=35.3
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
.+|...+|..|++++..|+.+|.+.+++.. ++.|.+.++.+||+
T Consensus 115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAe 161 (396)
T TIGR03528 115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAE 161 (396)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCE
Confidence 566666899999999999999987555553 35688899999985
No 485
>PLN02476 O-methyltransferase
Probab=68.16 E-value=13 Score=32.34 Aligned_cols=52 Identities=10% Similarity=-0.032 Sum_probs=40.0
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHH----HhCCCC
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQA----KDDGCH 255 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~----~~~Ga~ 255 (256)
...+....++||=+| .++|..++.+|+.++ .+|+.++.+++..+.+ +++|..
T Consensus 112 ~L~~~~~ak~VLEIG--T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~ 169 (278)
T PLN02476 112 MLVQILGAERCIEVG--VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS 169 (278)
T ss_pred HHHHhcCCCeEEEec--CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 445667788999998 688889999998774 4799999998887766 445653
No 486
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.87 E-value=26 Score=30.64 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=40.8
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVST 242 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~ 242 (256)
+|++..+.+..+... ++ -.|.+|+|.|-+.-+|.-+..++...||+|+...+.
T Consensus 139 ~PcTp~av~~lL~~y-~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~ 192 (288)
T PRK14171 139 IPCTALGCLAVIKKY-EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK 192 (288)
T ss_pred cCCCHHHHHHHHHHh-CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 455555555556544 43 479999999999999999999999999999876644
No 487
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=67.80 E-value=7.1 Score=32.18 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhhHHHHHh
Q 036416 205 KVEPGHTVLIQAAAGGVGSLLCQWANALG-ATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 205 ~~~~g~~VlI~ga~g~vG~~ai~la~~~g-a~Vi~~~~~~~~~~~~~~ 251 (256)
.+++|++|+-. -.|+|..++.+|+... .+|++++.+++-.+++++
T Consensus 98 ~v~~~e~VlD~--faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~ 143 (200)
T PF02475_consen 98 LVKPGEVVLDM--FAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKE 143 (200)
T ss_dssp C--TT-EEEET--T-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHH
T ss_pred cCCcceEEEEc--cCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHH
Confidence 47889988776 4789999999998554 579999999988877753
No 488
>PRK10742 putative methyltransferase; Provisional
Probab=67.76 E-value=16 Score=31.24 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=36.0
Q ss_pred HHcCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHH
Q 036416 202 RCFKVEPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAK 250 (256)
Q Consensus 202 ~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~ 250 (256)
...++++|++--|+.++.|+|..++.++.. ||+|+.+++++.-..+++
T Consensus 80 kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~ 127 (250)
T PRK10742 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLD 127 (250)
T ss_pred HHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHH
Confidence 455788888555666788888888887754 999999999876554443
No 489
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=67.75 E-value=20 Score=32.93 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHcCCCCCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCC
Q 036416 192 KGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGSLLCQWANALGA---TVIGTVST 242 (256)
Q Consensus 192 ~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~~ai~la~~~ga---~Vi~~~~~ 242 (256)
.......+++...+-=...+|+++| +|+.|.+++.+.+..|+ +|+++|+.
T Consensus 182 ~lA~llnalk~~gk~l~d~kiv~~G-AGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 182 TLAALLNALKLTGKKLKDQKIVING-AGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred HHHHHHHHHHHhCCCccceEEEEeC-CcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 3444455665554444667889999 59999999999999998 58888863
No 490
>PLN02463 lycopene beta cyclase
Probab=67.69 E-value=8.1 Score=35.93 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.2
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 211 TVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 211 ~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
.|+|.| +|+.|++++..+...|.+|.+++..+
T Consensus 30 DVvIVG-aGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 30 DLVVVG-GGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred eEEEEC-CCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 489999 59999998877777899999998754
No 491
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=67.29 E-value=10 Score=42.91 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=30.0
Q ss_pred CCCCCEEEEecCCChHHHHHHH-HHHHcCCeEEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQ-WANALGATVIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~-la~~~ga~Vi~~~~~ 242 (256)
+.+|+.+||.||++++|..++. +++..|++|+.+.++
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs 2031 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRS 2031 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4578899999999999987554 555558999999887
No 492
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=67.14 E-value=11 Score=33.52 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhhHHHHHhCCC
Q 036416 207 EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTKEKAAQAKDDGC 254 (256)
Q Consensus 207 ~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~~~~~~~~~~Ga 254 (256)
..|++|.|.| .|.+|...++=++..|+.+.-..+.+.+-+...++++
T Consensus 160 ~~gK~vgilG-~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 160 LEGKTVGILG-LGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred ccCCEEEEec-CcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence 4688999999 6999999999999989656666665555566655555
No 493
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=67.02 E-value=16 Score=32.43 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=27.1
Q ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeC
Q 036416 208 PGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVS 241 (256)
Q Consensus 208 ~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~ 241 (256)
.|++|+|.| +|.+|+-++..+...|++ |+++.+
T Consensus 171 ~g~~vvViG-~G~~g~e~A~~l~~~g~~~Vtvi~~ 204 (352)
T PRK12770 171 EGKKVVVVG-AGLTAVDAALEAVLLGAEKVYLAYR 204 (352)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEee
Confidence 378999999 599998888777778986 888875
No 494
>PRK09224 threonine dehydratase; Reviewed
Probab=67.01 E-value=22 Score=33.61 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=33.9
Q ss_pred EEecCCChHHHHHHHHHHHcCCeEEEEeC---ChhhHHHHHhCCCC
Q 036416 213 LIQAAAGGVGSLLCQWANALGATVIGTVS---TKEKAAQAKDDGCH 255 (256)
Q Consensus 213 lI~ga~g~vG~~ai~la~~~ga~Vi~~~~---~~~~~~~~~~~Ga~ 255 (256)
+|..++|.-|++++..|+.+|.+.+++.. +..|.+.++.+||+
T Consensus 71 vV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~ 116 (504)
T PRK09224 71 VITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGE 116 (504)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCE
Confidence 44445899999999999999997666554 35678889999984
No 495
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=66.97 E-value=19 Score=34.69 Aligned_cols=54 Identities=26% Similarity=0.218 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHcCCCCCCEEEEecCCChHHH--HHHHHHHHcCCeEEEEeCChhh
Q 036416 191 LKGMTAQFLLRRCFKVEPGHTVLIQAAAGGVGS--LLCQWANALGATVIGTVSTKEK 245 (256)
Q Consensus 191 ~~~~ta~~~l~~~~~~~~g~~VlI~ga~g~vG~--~ai~la~~~ga~Vi~~~~~~~~ 245 (256)
..+.|...++.....+..|+++.|.|+ .++|. ...|+++...+.|++.+..-+|
T Consensus 209 ~pL~TGirvID~l~Pi~kGq~~~Ipg~-~G~GKTvl~~~iak~a~adivVyvg~GER 264 (586)
T PRK04192 209 EPLITGQRVIDTFFPVAKGGTAAIPGP-FGSGKTVTQHQLAKWADADIVIYVGCGER 264 (586)
T ss_pred CccccCchhhhcccccccCCeEEEecC-CCCCHHHHHHHHHhcCCCCEEEEEEcCcC
Confidence 345666777777777899999999995 66664 4566777666665555543333
No 496
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.88 E-value=29 Score=30.24 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=41.6
Q ss_pred hchhHHHHHHHHHHHcCC-CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 189 IMLKGMTAQFLLRRCFKV-EPGHTVLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~-~~g~~VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
+|++..+....+... ++ -.|.+|+|.|-+.-+|.-...++...+|+|+...+..
T Consensus 137 ~PcTp~avi~ll~~~-~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T 191 (282)
T PRK14182 137 RPCTPAGVMRMLDEA-RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT 191 (282)
T ss_pred CCCCHHHHHHHHHHh-CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 456655555556544 33 4799999999999999999999999999988876543
No 497
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=66.59 E-value=14 Score=29.60 Aligned_cols=40 Identities=25% Similarity=0.162 Sum_probs=27.6
Q ss_pred HcCCCCCCEEEEecCCChHHHHHHHHHHHc-C-CeEEEEeCChh
Q 036416 203 CFKVEPGHTVLIQAAAGGVGSLLCQWANAL-G-ATVIGTVSTKE 244 (256)
Q Consensus 203 ~~~~~~g~~VlI~ga~g~vG~~ai~la~~~-g-a~Vi~~~~~~~ 244 (256)
...+++|++||.+| +|.-++ +..+++.. + .+|++++.++.
T Consensus 27 ~~~i~~g~~VLDiG-~GtG~~-~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 27 FKLIKPGDTVLDLG-AAPGGW-SQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred hcccCCCCEEEEec-CCCCHH-HHHHHHHhCCCceEEEEecccc
Confidence 34578999999999 465554 44444443 3 47999998764
No 498
>PRK07804 L-aspartate oxidase; Provisional
Probab=66.52 E-value=8.6 Score=36.63 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=26.2
Q ss_pred EEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 036416 212 VLIQAAAGGVGSLLCQWANALGATVIGTVSTK 243 (256)
Q Consensus 212 VlI~ga~g~vG~~ai~la~~~ga~Vi~~~~~~ 243 (256)
|+|+| +|..|+.++--|...|++|++++...
T Consensus 19 VlVIG-~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 19 VVVVG-SGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred EEEEC-ccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 89999 59999998888877899999987643
No 499
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=66.29 E-value=12 Score=32.39 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=28.1
Q ss_pred CEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhhHHHHHh
Q 036416 210 HTVLIQAAAGGVGSLLCQWANALG--ATVIGTVSTKEKAAQAKD 251 (256)
Q Consensus 210 ~~VlI~ga~g~vG~~ai~la~~~g--a~Vi~~~~~~~~~~~~~~ 251 (256)
++|+.+| +|++-+-++.+++..+ +.|+.+|.+++..+.+++
T Consensus 122 ~rVaFIG-SGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~ 164 (276)
T PF03059_consen 122 SRVAFIG-SGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR 164 (276)
T ss_dssp -EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH
T ss_pred ceEEEEc-CCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 4999999 7999999999998764 679999999887766644
No 500
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=66.11 E-value=14 Score=36.75 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCC
Q 036416 206 VEPGHTVLIQAAAGGVGSLLCQWANALGAT-VIGTVST 242 (256)
Q Consensus 206 ~~~g~~VlI~ga~g~vG~~ai~la~~~ga~-Vi~~~~~ 242 (256)
...|++|+|+| .|.+|+-++..+...|++ |+.+.+.
T Consensus 567 ~~~gk~VvVIG-gG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 567 IKFGKKVAVVG-GGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred ccCCCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 45789999999 599999999999999996 8888764
Done!