Query 036418
Match_columns 335
No_of_seqs 230 out of 609
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 21:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 94.3 0.0093 3.2E-07 45.5 0.4 34 181-227 32-65 (90)
2 2kmz_A Tumor necrosis factor r 66.1 1.8 6.3E-05 30.8 0.9 19 271-290 13-31 (53)
3 2eqp_A Tumor necrosis factor r 63.3 1.5 5.1E-05 30.8 -0.0 19 271-290 20-38 (50)
4 1r9i_A MU-conotoxin PIIIA; cys 58.5 3.1 0.00011 25.6 0.8 12 221-232 1-12 (26)
5 2klu_A T-cell surface glycopro 36.8 30 0.001 26.1 3.4 18 182-199 42-59 (70)
6 2kn0_A FN14; tweak, TNF recept 30.7 11 0.00037 28.0 0.1 19 271-290 9-27 (66)
7 4ev6_A Magnesium transport pro 28.2 1.8E+02 0.006 27.0 8.0 22 72-93 280-301 (339)
8 3rce_A Oligosaccharide transfe 22.9 2.9E+02 0.0099 29.1 9.2 34 81-118 358-393 (724)
9 2kog_A Vesicle-associated memb 20.5 91 0.0031 25.4 3.9 15 294-308 86-102 (119)
10 1gib_A MU-conotoxin GIIIB; neu 20.2 34 0.0012 20.9 0.9 10 223-232 2-11 (26)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=94.26 E-value=0.0093 Score=45.55 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCchhhhhHhhhcCcccccccccCcccccchhhhccCCCCCCcccCC
Q 036418 181 PNNWNNIKSCIYDTKICDDLFLKSLTVKSYDFTMKKLSPIESGCCTP 227 (335)
Q Consensus 181 ~~~W~~I~sCL~~s~~C~gl~~~~~~~~~~D~~~~~lspIqSGCCKP 227 (335)
.+.|+.||.-| .|||.++ +. ||.. +++|.+||++
T Consensus 32 ~~~~d~iQ~~l----~CCG~~~-~~-----Dw~~---~~vP~ScC~~ 65 (90)
T 1g8q_A 32 KAVVKTFHETL----DCCGSST-LT-----ALTT---SVLKNNLCPS 65 (90)
T ss_dssp HHHHHHHHHHH----TCCSCTT-CG-----GGHH---HHHHTTCSCT
T ss_pred HHHHHHHHHhh----cCCCCCC-hh-----hhcc---CCCCCCCCCC
Confidence 45899999888 9999877 45 6643 2478899964
No 2
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=66.09 E-value=1.8 Score=30.81 Aligned_cols=19 Identities=32% Similarity=1.074 Sum_probs=16.6
Q ss_pred ccccCCCCcccccCcchhhH
Q 036418 271 DTWTNDRNVLCYDCQACKDG 290 (335)
Q Consensus 271 ~~WsNd~~~LCy~C~SCKaG 290 (335)
+.||-|-+ .|-||.||++.
T Consensus 13 sswS~DLd-KCmdcs~C~~~ 31 (53)
T 2kmz_A 13 SSWSADLD-KCMDCASCRAR 31 (53)
T ss_dssp CBCCTTTT-CCBCSTTCSSC
T ss_pred cccchhhh-hhhccccCCCC
Confidence 56999987 99999999975
No 3
>2eqp_A Tumor necrosis factor receptor superfamily member 12A; STN_TNFRSF12A_TNFR domain; NMR {Homo sapiens} PDB: 2rpj_A
Probab=63.29 E-value=1.5 Score=30.82 Aligned_cols=19 Identities=32% Similarity=1.074 Sum_probs=16.7
Q ss_pred ccccCCCCcccccCcchhhH
Q 036418 271 DTWTNDRNVLCYDCQACKDG 290 (335)
Q Consensus 271 ~~WsNd~~~LCy~C~SCKaG 290 (335)
+.||-|-+ .|-||.||++.
T Consensus 20 sswS~DLd-KCMdcssC~~r 38 (50)
T 2eqp_A 20 SSWSADLD-KCMDCASCRAR 38 (50)
T ss_dssp CEEETTTT-EEECHHHHHHC
T ss_pred cccchhhh-hhhccccCCCC
Confidence 56999987 99999999985
No 4
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=58.49 E-value=3.1 Score=25.62 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.6
Q ss_pred CCcccCCCCCCC
Q 036418 221 ESGCCTPPAVCG 232 (335)
Q Consensus 221 qSGCCKPPt~Cg 232 (335)
+.+||++|.+|.
T Consensus 1 er~CC~~Pk~Ck 12 (26)
T 1r9i_A 1 ERLCCGFPKSCR 12 (26)
T ss_dssp CCTTTTSTTGGG
T ss_pred CCcccCCCCccc
Confidence 358999999885
No 5
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=36.82 E-value=30 Score=26.07 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=12.8
Q ss_pred CchhhhhHhhhcCccccc
Q 036418 182 NNWNNIKSCIYDTKICDD 199 (335)
Q Consensus 182 ~~W~~I~sCL~~s~~C~g 199 (335)
+.-..||.=|.+.+.|.-
T Consensus 42 eRMSQikrlLsEKKTCQC 59 (70)
T 2klu_A 42 ERMSQIKRLLSEKKTSQS 59 (70)
T ss_dssp TTSSHHHHHHHSSSCCCC
T ss_pred HHHHHHHHHHhccccccC
Confidence 344578888888888853
No 6
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=30.70 E-value=11 Score=28.01 Aligned_cols=19 Identities=26% Similarity=0.885 Sum_probs=15.4
Q ss_pred ccccCCCCcccccCcchhhH
Q 036418 271 DTWTNDRNVLCYDCQACKDG 290 (335)
Q Consensus 271 ~~WsNd~~~LCy~C~SCKaG 290 (335)
+.||-|-+ .|-+|.+|++.
T Consensus 9 ssws~dLd-kCM~Cs~C~~~ 27 (66)
T 2kn0_A 9 RAYSQDLG-KCMECSVCKNS 27 (66)
T ss_dssp EEEETTTT-EEEESTTCSSC
T ss_pred cccchhHH-hhcccCcCCCC
Confidence 46888876 89999999863
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.17 E-value=1.8e+02 Score=27.05 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhe
Q 036418 72 GILAMISFIVSLPILASVIWLL 93 (335)
Q Consensus 72 ~~~Nfl~~l~Gi~ILg~GIWl~ 93 (335)
..+..++.+.-.+-+.+|+|-+
T Consensus 280 k~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3333444443344444555543
No 8
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=22.94 E-value=2.9e+02 Score=29.12 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhheeeccCccccc--cccchHHHHHHHHHH
Q 036418 81 VSLPILASVIWLLYMRDYDCENL--LRLPRLQTGIGIALL 118 (335)
Q Consensus 81 ~Gi~ILg~GIWl~~~~~~~c~~~--l~~P~ilI~iGv~il 118 (335)
+.+++++.|++....+. || +..|.+.+++|.++-
T Consensus 358 l~Lp~~~lG~la~~~G~----RF~~~~~P~lalg~G~~i~ 393 (724)
T 3rce_A 358 LALPMLALGFMALRAGL----RFTIYAVPVMALGFGYFLY 393 (724)
T ss_dssp GGHHHHHHHHHHHHHCG----GGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Confidence 55677788877665432 43 567776566665443
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.48 E-value=91 Score=25.41 Aligned_cols=15 Identities=33% Similarity=0.959 Sum_probs=6.9
Q ss_pred HHHHH--HHHHHHHHHH
Q 036418 294 TLESK--WRKLGLFLVL 308 (335)
Q Consensus 294 ~lr~~--W~~~~i~ni~ 308 (335)
.+|++ |++.-+..++
T Consensus 86 kl~rkmwwkn~K~~iii 102 (119)
T 2kog_A 86 KLKRKYWWKNLKMMIIL 102 (119)
T ss_dssp HHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45543 5554444443
No 10
>1gib_A MU-conotoxin GIIIB; neurotoxin, sodium channel inhibitor; HET: HYP; NMR {Conus geographus} SCOP: j.30.1.1 PDB: 1tcg_A* 1tcj_A* 1tch_A* 1tck_A*
Probab=20.16 E-value=34 Score=20.88 Aligned_cols=10 Identities=60% Similarity=1.627 Sum_probs=7.7
Q ss_pred cccCCCCCCC
Q 036418 223 GCCTPPAVCG 232 (335)
Q Consensus 223 GCCKPPt~Cg 232 (335)
-||.||.+|.
T Consensus 2 ~cc~~p~~ck 11 (26)
T 1gib_A 2 DCCTPPRKCK 11 (26)
T ss_dssp CSSSSSCCCC
T ss_pred cccCCCcccc
Confidence 3888888885
Done!