BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036421
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 240/399 (60%), Gaps = 12/399 (3%)
Query: 26 SSGRSVTALKPISAVHSTDPANTKTVSTKWTPDSWRNKKALQIPEYPNKAELDSVLDTLS 85
SSG + T PI + S P T + T+ D+ K A Q P +P L ++ L
Sbjct: 8 SSGMNWTVDIPIDQLPSLPPLPTD-LRTRL--DAALAKPAAQQPTWPADQAL-AMRTVLE 63
Query: 86 SFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVL 145
S PP+ E +L+++L Q A G AFLL GGDCAE+F + +IR R LLQM+VVL
Sbjct: 64 SVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVL 123
Query: 146 MFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMI 205
+G MPV+KV R+AGQ+AKPRS + + + L SYRGD +NG A D +R DP R++
Sbjct: 124 TYGASMPVVKVARIAGQYAKPRS---ADIDALGLRSYRGDMINGFAPDAAAREHDPSRLV 180
Query: 206 RAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAA 265
RAY+ + A +NL+RA + G A++ V WN +F S G RY+ LA +D + FM+A
Sbjct: 181 RAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSA 240
Query: 266 AGLTANHPIMTSTEFWTSHECLLLPYEQALTR---EDSTSGLYYDCSAHMVWVGERTRQL 322
G+ + + + E + SHE L+L YE+A+ R D +D SAH VW+GERTRQ+
Sbjct: 241 CGVADRN--LQTAEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQI 298
Query: 323 DGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLP 382
DGAH+ F + +ANP+G+K+ M P+ V + L+P NKPGR+T++ RMG +R LP
Sbjct: 299 DGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLP 358
Query: 383 HLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAI 421
++ V+ G V W DPMHGNT ++ +G KTR FD I
Sbjct: 359 PIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRI 397
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 226/367 (61%), Gaps = 9/367 (2%)
Query: 58 DSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGG 117
D+ K A Q P +P L ++ L S PP+ E +L+++L Q A G AFLL GG
Sbjct: 29 DAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGG 87
Query: 118 DCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGV 177
DCAE+F + +IR R LLQM+VVL +G MPV+KV R+AGQ+AKPRS + + +
Sbjct: 88 DCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDAL 144
Query: 178 KLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNL 237
L SYRGD +NG A D +R DP R++RAY+ + A +NL+RA + G A++ V WN
Sbjct: 145 GLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWNR 204
Query: 238 DFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTR 297
+F S G RY+ LA +D + FM+A G+ + + + E + SHE L+L YE+A+ R
Sbjct: 205 EFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAMLR 262
Query: 298 ---EDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLI 354
D +D SAH VW+GERTRQ+DGAH+ F + +ANP+G+K+ M P+ V +
Sbjct: 263 LSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYV 322
Query: 355 VILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLK 414
L+P NKPGR+T++ RMG +R LP ++ V+ G V W DPMHGNT ++ +G K
Sbjct: 323 ERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFK 382
Query: 415 TRSFDAI 421
TR FD I
Sbjct: 383 TRHFDRI 389
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 226/367 (61%), Gaps = 9/367 (2%)
Query: 58 DSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGG 117
D+ K A Q P +P L ++ L S PP+ E +L+++L Q A G AFLL GG
Sbjct: 27 DAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGG 85
Query: 118 DCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGV 177
DCAE+F + +IR R LLQM+VVL +G MPV+KV R+AGQ+AKPRS + + +
Sbjct: 86 DCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDAL 142
Query: 178 KLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNL 237
L SYRGD +NG A D +R DP R++RAY+ + A +NL+RA + G A++ V WN
Sbjct: 143 GLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWNR 202
Query: 238 DFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTR 297
+F S G RY+ LA +D + FM+A G+ + + + E + SHE L+L YE+A+ R
Sbjct: 203 EFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAMLR 260
Query: 298 ---EDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLI 354
D +D SAH VW+GERTRQ+DGAH+ F + +ANP+G+K+ M P+ V +
Sbjct: 261 LSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYV 320
Query: 355 VILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLK 414
L+P NKPGR+T++ RMG +R LP ++ V+ G V W DPMHGNT ++ +G K
Sbjct: 321 ERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFK 380
Query: 415 TRSFDAI 421
TR FD I
Sbjct: 381 TRHFDRI 387
>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
pdb|2B7O|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Length = 464
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 218/367 (59%), Gaps = 9/367 (2%)
Query: 58 DSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGG 117
D+ K A Q P +P L + L S PP+ E +L+++L Q A G AFLL GG
Sbjct: 29 DAALAKPAAQQPTWPADQAL-AXRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGG 87
Query: 118 DCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGV 177
DCAE+F + +IR R LLQ +VVL +G PV+KV R+AGQ+AKPRS + + +
Sbjct: 88 DCAETFXDNTEPHIRGNVRALLQXAVVLTYGASXPVVKVARIAGQYAKPRS---ADIDAL 144
Query: 178 KLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNL 237
L SYRGD +NG A D +R DP R++RAY+ + A NL+RA + G A++ V WN
Sbjct: 145 GLRSYRGDXINGFAPDAAAREHDPSRLVRAYANASAAXNLVRALTSSGLASLHLVHDWNR 204
Query: 238 DFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQA--- 294
+F S G RY+ LA +D + F +A G+ + + + E + SHE L+L YE+A
Sbjct: 205 EFVRTSPAGARYEALATEIDRGLRFXSACGVADRN--LQTAEIYASHEALVLDYERAXLR 262
Query: 295 LTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLI 354
L+ D +D SAH VW+GERTRQ+DGAH+ F + +ANP+G+K+ P+ V +
Sbjct: 263 LSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNXTPELAVEYV 322
Query: 355 VILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLK 414
L+P NKPGR+T++ R G +R LP ++ V+ G V W DP HGNT ++ +G K
Sbjct: 323 ERLDPHNKPGRLTLVSRXGNHKVRDLLPPIVEKVQATGHQVIWQCDPXHGNTHESSTGFK 382
Query: 415 TRSFDAI 421
TR FD I
Sbjct: 383 TRHFDRI 389
>pdb|2VHG|A Chain A, Crystal Structure Of The Ishp608 Transposase In Complex
With Right End 31-Mer Dna
pdb|2VHG|B Chain B, Crystal Structure Of The Ishp608 Transposase In Complex
With Right End 31-Mer Dna
pdb|2VIC|A Chain A, Crystal Structure Of The Ishp608 Transposase In Complex
With Left End 26-Mer Dna And Manganese
pdb|2VIC|B Chain B, Crystal Structure Of The Ishp608 Transposase In Complex
With Left End 26-Mer Dna And Manganese
pdb|2VIH|A Chain A, Crystal Structure Of The Is608 Transposase In Complex With
Left End 26-Mer Dna
pdb|2VIH|B Chain B, Crystal Structure Of The Is608 Transposase In Complex With
Left End 26-Mer Dna
pdb|2VJU|A Chain A, Crystal Structure Of The Is608 Transposase In Complex With
The Complete Right End 35-Mer Dna And Manganese
pdb|2VJU|B Chain B, Crystal Structure Of The Is608 Transposase In Complex With
The Complete Right End 35-Mer Dna And Manganese
pdb|2VJV|A Chain A, Crystal Structure Of The Is608 Transposase In Complex With
Left End 26-Mer Dna Hairpin And A 6-Mer Dna Representing
The Left End Cleavage Site
pdb|2VJV|B Chain B, Crystal Structure Of The Is608 Transposase In Complex With
Left End 26-Mer Dna Hairpin And A 6-Mer Dna Representing
The Left End Cleavage Site
Length = 159
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 300 STSGLYYDCSAHMVWVGERTRQLDGAHV-----EFLRGVANPLGIKVSNKMDPKELVRLI 354
S + Y C H+VW + R++ V E ++ VA L +++ K+ + ++
Sbjct: 13 SNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHIL 72
Query: 355 VILNP--------KNKPGRITVIVRMGAENMRVKLPHL 384
++P K GR + I+R +++ KLP L
Sbjct: 73 ADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTL 110
>pdb|2A6M|A Chain A, Crystal Structure Of The Ishp608 Transposase
pdb|2A6M|B Chain B, Crystal Structure Of The Ishp608 Transposase
pdb|2A6O|A Chain A, Crystal Structure Of The Ishp608 Transposase In Complex
With Stem-Loop Dna
pdb|2A6O|B Chain B, Crystal Structure Of The Ishp608 Transposase In Complex
With Stem-Loop Dna
Length = 155
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 300 STSGLYYDCSAHMVWVGERTRQLDGAHV-----EFLRGVANPLGIKVSNKMDPKELVRLI 354
S + Y C H+VW + R++ V E ++ VA L +++ K+ + ++
Sbjct: 9 SNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHIL 68
Query: 355 VILNP--------KNKPGRITVIVRMGAENMRVKLPHL 384
++P K GR + I+R +++ KLP L
Sbjct: 69 ADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPTL 106
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 236 NLDFTDHSEQGDRYQELANRVDEAIGFMAAAGL--TANHPIMTSTEFWTSHECLLLPY 291
N+ D Q D YQ LA+ G +AAAGL T+ P+ T+ T C++LP+
Sbjct: 242 NISRGDVVNQDDLYQALAS------GKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPH 293
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 236 NLDFTDHSEQGDRYQELANRVDEAIGFMAAAGL--TANHPIMTSTEFWTSHECLLLPY 291
N+ D Q D YQ LA+ G +AAAGL T+ P+ T+ T C++LP+
Sbjct: 244 NISRGDVVNQDDLYQALAS------GKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPH 295
>pdb|1WX2|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Hydrogenperoxide
pdb|1WX4|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Dithiothreitol
pdb|1WX5|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WX5|C Chain C, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WXC|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein
pdb|2AHK|A Chain A, Crystal Structure Of The Met-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase In Complex
With A Caddie Protein Obtained By Soking In Cupric
Sulfate For 6 Months
pdb|2AHL|A Chain A, Crystal Structure Of The Hydroxylamine-Induced Deoxy-Form
Of The Copper-Bound Streptomyces Castaneoglobisporus
Tyrosinase In Complex With A Caddie Protein
pdb|2ZMX|A Chain A, Crystal Structure Of The Met1-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 36 Hours
pdb|2ZMY|A Chain A, Crystal Structure Of The Met2-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 80 Hours
pdb|2ZMZ|A Chain A, The 1.37-A Crystal Structure Of The Hydroxylamine-Induced
Deoxy-Form Of The Copper-Bound Tyrosinase In Complex
With A Caddie Protein From Streptomyces
Castaneoglobisporus
pdb|2ZWD|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen- Saturated Solution For 5 Minutes
pdb|2ZWE|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 40 Minutes
pdb|2ZWF|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 80 Minutes
pdb|2ZWG|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 12 Hours
pdb|3AWS|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is Low
pdb|3AWT|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is High
pdb|3AWU|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
40 H
pdb|3AWV|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is Low
pdb|3AWW|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is High
pdb|3AWX|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H82q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWY|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie M84l Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWZ|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H97q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AX0|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Y98f Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
Length = 281
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 248 RYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGL-YY 306
RY E +E I +G H S F H LL +EQAL DS+ L Y+
Sbjct: 30 RYDEFVRTHNEFIMSDTDSGERTGH---RSPSFLPWHRRFLLDFEQALQSVDSSVTLPYW 86
Query: 307 DCSA 310
D SA
Sbjct: 87 DWSA 90
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 46 ANTKTVSTK-WTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVF------AGESRK 98
ANTKTV+ K P W+ A + L + PP VF AG
Sbjct: 294 ANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKATVILWNGPPGVFEFEKFAAGTKAL 353
Query: 99 LEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMP 152
L++ + +A GN ++ GGD A K++ + S+ L+ G ++P
Sbjct: 354 LDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELP 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,133,306
Number of Sequences: 62578
Number of extensions: 496090
Number of successful extensions: 1222
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 13
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)