Query 036421
Match_columns 422
No_of_seqs 144 out of 458
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02291 phospho-2-dehydro-3-d 100.0 5E-179 1E-183 1354.7 35.4 370 53-422 18-387 (474)
2 TIGR01358 DAHP_synth_II 3-deox 100.0 8E-179 2E-183 1347.4 34.0 367 55-422 1-367 (443)
3 PF01474 DAHP_synth_2: Class-I 100.0 1E-175 3E-180 1323.2 18.3 369 54-422 1-370 (439)
4 COG3200 AroG 3-deoxy-D-arabino 100.0 4E-172 9E-177 1268.8 28.8 370 52-422 2-371 (445)
5 PLN03033 2-dehydro-3-deoxyphos 96.4 0.02 4.3E-07 57.7 10.0 87 310-404 107-199 (290)
6 PRK12755 phospho-2-dehydro-3-d 94.0 0.13 2.8E-06 53.3 6.8 99 310-409 158-276 (353)
7 PF00793 DAHP_synth_1: DAHP sy 93.9 0.03 6.5E-07 55.5 1.9 97 310-409 108-209 (270)
8 TIGR00034 aroFGH phospho-2-deh 93.9 0.12 2.7E-06 53.3 6.3 97 312-409 154-269 (344)
9 PRK09261 phospho-2-dehydro-3-d 93.6 0.096 2.1E-06 54.1 4.9 99 310-409 157-275 (349)
10 PRK13398 3-deoxy-7-phosphohept 92.3 0.7 1.5E-05 45.8 8.7 91 311-406 112-208 (266)
11 KOG2599 Pyridoxal/pyridoxine/p 91.6 0.48 1E-05 48.1 6.7 85 321-405 34-123 (308)
12 PRK08673 3-deoxy-7-phosphohept 89.6 1.5 3.3E-05 45.1 8.4 93 311-407 178-275 (335)
13 PRK13396 3-deoxy-7-phosphohept 89.5 0.95 2.1E-05 47.0 6.9 91 310-405 185-282 (352)
14 COG2240 PdxK Pyridoxal/pyridox 88.4 1.2 2.6E-05 45.0 6.6 65 342-406 50-116 (281)
15 PRK05756 pyridoxamine kinase; 87.5 1.5 3.2E-05 42.6 6.4 66 340-405 49-116 (286)
16 TIGR00687 pyridox_kin pyridoxa 86.2 1.8 4E-05 41.9 6.3 62 341-402 50-113 (286)
17 PRK12822 phospho-2-dehydro-3-d 81.2 5 0.00011 42.0 7.3 97 312-409 159-274 (356)
18 PRK12756 phospho-2-dehydro-3-d 79.2 6.3 0.00014 41.2 7.2 95 314-409 160-273 (348)
19 PRK05198 2-dehydro-3-deoxyphos 78.8 5 0.00011 40.5 6.2 87 310-404 101-193 (264)
20 TIGR01362 KDO8P_synth 3-deoxy- 77.7 6 0.00013 39.8 6.4 90 310-404 93-185 (258)
21 TIGR01361 DAHP_synth_Bsub phos 77.7 7.1 0.00015 38.5 6.9 92 311-406 110-206 (260)
22 cd02803 OYE_like_FMN_family Ol 76.4 6.6 0.00014 38.7 6.3 129 249-397 136-286 (327)
23 cd01173 pyridoxal_pyridoxamine 75.6 7.2 0.00016 36.8 6.1 67 334-402 40-111 (254)
24 PTZ00344 pyridoxal kinase; Pro 74.3 8.9 0.00019 37.7 6.5 65 340-404 52-118 (296)
25 PRK12457 2-dehydro-3-deoxyphos 74.0 9.4 0.0002 38.8 6.7 90 310-404 107-201 (281)
26 PLN02978 pyridoxal kinase 70.7 8.7 0.00019 38.4 5.6 62 343-404 65-127 (308)
27 PF10096 DUF2334: Uncharacteri 67.9 9.4 0.0002 37.1 5.1 67 341-412 9-83 (243)
28 cd02067 B12-binding B12 bindin 56.2 41 0.00088 28.3 6.3 55 339-399 31-87 (119)
29 cd02931 ER_like_FMN Enoate red 55.9 18 0.00038 37.5 4.8 90 251-359 147-263 (382)
30 cd04883 ACT_AcuB C-terminal AC 55.0 25 0.00054 26.6 4.4 35 359-397 36-70 (72)
31 PRK13397 3-deoxy-7-phosphohept 54.9 22 0.00047 35.5 5.0 91 310-404 99-194 (250)
32 PRK13523 NADPH dehydrogenase N 54.2 23 0.00049 36.3 5.2 90 249-359 137-238 (337)
33 PLN03007 UDP-glucosyltransfera 53.6 30 0.00066 36.7 6.2 37 365-401 285-323 (482)
34 PRK13296 tRNA CCA-pyrophosphor 53.0 23 0.00049 37.3 5.1 64 197-271 128-203 (360)
35 cd04738 DHOD_2_like Dihydrooro 50.9 18 0.00039 36.5 3.9 38 335-373 203-240 (327)
36 cd08555 PI-PLCc_GDPD_SF Cataly 50.7 45 0.00097 30.3 6.1 63 339-401 86-159 (179)
37 cd02685 MIT_C MIT_C; domain fo 50.3 46 0.001 31.1 6.1 65 350-415 38-108 (148)
38 PRK12595 bifunctional 3-deoxy- 48.3 55 0.0012 34.1 7.0 89 310-404 202-297 (360)
39 cd02930 DCR_FMN 2,4-dienoyl-Co 47.9 28 0.0006 35.4 4.7 94 249-361 132-237 (353)
40 cd02071 MM_CoA_mut_B12_BD meth 46.7 74 0.0016 27.4 6.5 55 339-399 31-87 (122)
41 TIGR01309 L30P_arch 50S riboso 46.5 14 0.0003 34.3 2.1 108 65-189 28-146 (152)
42 COG0722 AroG 3-deoxy-D-arabino 43.3 88 0.0019 32.9 7.4 110 299-409 146-275 (351)
43 cd04747 OYE_like_5_FMN Old yel 43.1 41 0.00089 34.9 5.1 88 250-358 140-245 (361)
44 COG1448 TyrB Aspartate/tyrosin 42.4 7 0.00015 41.4 -0.5 38 371-418 108-147 (396)
45 cd04741 DHOD_1A_like Dihydroor 41.8 36 0.00078 33.9 4.3 49 325-373 144-197 (294)
46 PRK05286 dihydroorotate dehydr 41.8 31 0.00068 35.2 4.0 37 335-372 212-248 (344)
47 TIGR01036 pyrD_sub2 dihydrooro 40.9 29 0.00062 35.5 3.6 57 316-373 181-248 (335)
48 PRK12457 2-dehydro-3-deoxyphos 38.9 52 0.0011 33.7 5.0 61 316-398 171-236 (281)
49 PF14658 EF-hand_9: EF-hand do 38.6 32 0.00069 28.1 2.8 35 327-368 21-55 (66)
50 PLN02826 dihydroorotate dehydr 38.5 34 0.00075 36.2 3.8 53 316-369 231-296 (409)
51 PRK10887 glmM phosphoglucosami 38.4 60 0.0013 34.0 5.5 44 352-398 158-201 (443)
52 cd04735 OYE_like_4_FMN Old yel 37.9 41 0.00089 34.3 4.2 88 250-358 140-245 (353)
53 PRK02506 dihydroorotate dehydr 37.4 33 0.00072 34.5 3.4 37 327-363 146-186 (310)
54 cd04734 OYE_like_3_FMN Old yel 37.3 47 0.001 33.9 4.5 87 251-358 138-238 (343)
55 cd01828 sialate_O-acetylestera 37.0 1.2E+02 0.0026 26.4 6.4 52 346-399 33-94 (169)
56 cd05800 PGM_like2 This PGM-lik 36.7 78 0.0017 33.2 6.1 14 391-406 172-185 (461)
57 cd02810 DHOD_DHPD_FMN Dihydroo 34.9 32 0.0007 33.4 2.8 37 335-372 163-199 (289)
58 cd02933 OYE_like_FMN Old yello 34.8 5.2E+02 0.011 26.5 12.6 85 257-360 155-253 (338)
59 PF12617 LdpA_C: Iron-Sulfur b 33.8 88 0.0019 30.2 5.4 59 347-406 20-81 (183)
60 PRK14314 glmM phosphoglucosami 33.2 56 0.0012 34.2 4.4 47 349-398 161-207 (450)
61 PRK05722 glucose-6-phosphate 1 33.1 26 0.00056 38.1 1.9 53 123-186 260-313 (495)
62 cd00468 HIT_like HIT family: H 32.5 1.2E+02 0.0026 23.5 5.2 56 106-162 16-75 (86)
63 cd01829 SGNH_hydrolase_peri2 S 32.2 1.3E+02 0.0029 26.7 6.1 28 375-402 91-118 (200)
64 PRK01759 glnD PII uridylyl-tra 31.5 75 0.0016 36.6 5.3 64 198-271 340-415 (854)
65 TIGR02370 pyl_corrinoid methyl 31.4 1.2E+02 0.0027 28.4 6.0 54 339-399 116-173 (197)
66 cd02911 arch_FMN Archeal FMN-b 31.2 52 0.0011 31.9 3.5 64 327-396 129-195 (233)
67 TIGR02826 RNR_activ_nrdG3 anae 31.2 97 0.0021 28.2 5.0 50 342-396 43-92 (147)
68 PRK13298 tRNA CCA-pyrophosphor 30.2 1.2E+02 0.0025 32.6 6.1 24 344-367 316-339 (417)
69 cd00959 DeoC 2-deoxyribose-5-p 27.5 73 0.0016 29.9 3.7 32 324-356 161-195 (203)
70 cd08229 STKc_Nek7 Catalytic do 27.3 2E+02 0.0043 26.2 6.4 22 249-270 108-129 (267)
71 PLN02210 UDP-glucosyl transfer 27.1 1.1E+02 0.0024 32.6 5.3 80 318-401 207-307 (456)
72 cd02808 GltS_FMN Glutamate syn 27.1 74 0.0016 33.2 4.0 67 325-392 203-281 (392)
73 PRK10885 cca multifunctional t 27.0 1.3E+02 0.0029 31.7 5.8 27 198-224 129-166 (409)
74 TIGR02491 NrdG anaerobic ribon 26.9 1.4E+02 0.003 26.9 5.2 55 341-398 42-101 (154)
75 PRK14046 malate--CoA ligase su 26.8 1.5E+02 0.0032 31.1 6.1 67 332-405 282-352 (392)
76 PF05598 DUF772: Transposase d 26.8 1.2E+02 0.0026 23.7 4.3 23 249-271 25-47 (77)
77 PRK02261 methylaspartate mutas 26.8 1.4E+02 0.0031 26.7 5.3 55 339-399 35-91 (137)
78 TIGR01942 pcnB poly(A) polymer 26.8 1.4E+02 0.003 32.0 5.9 58 198-270 165-235 (410)
79 PRK08255 salicylyl-CoA 5-hydro 26.5 95 0.0021 35.1 4.9 91 249-360 546-650 (765)
80 PF01713 Smr: Smr domain; Int 26.1 1E+02 0.0023 24.5 3.9 44 363-407 27-76 (83)
81 PRK14315 glmM phosphoglucosami 26.1 88 0.0019 32.8 4.3 51 352-405 163-216 (448)
82 PF04136 Sec34: Sec34-like fam 25.3 27 0.00058 32.2 0.4 41 246-298 94-134 (157)
83 cd06619 PKc_MKK5 Catalytic dom 25.3 1.4E+02 0.0029 27.9 5.0 21 250-270 98-118 (279)
84 TIGR02692 tRNA_CCA_actino tRNA 25.2 1.2E+02 0.0025 32.3 5.1 62 198-271 167-238 (466)
85 PF08203 RNA_polI_A14: Yeast R 25.2 43 0.00092 28.1 1.5 18 75-92 59-76 (76)
86 PF01676 Metalloenzyme: Metall 25.0 86 0.0019 30.4 3.8 88 325-416 98-207 (252)
87 PF04361 DUF494: Protein of un 24.8 74 0.0016 29.5 3.1 39 254-292 38-82 (155)
88 PRK12595 bifunctional 3-deoxy- 24.8 4.5E+02 0.0098 27.5 9.1 38 136-188 132-169 (360)
89 PRK13397 3-deoxy-7-phosphohept 24.7 85 0.0019 31.4 3.7 44 110-171 14-58 (250)
90 PF05265 DUF723: Protein of un 24.6 53 0.0011 26.6 1.8 18 392-410 28-45 (60)
91 PRK10605 N-ethylmaleimide redu 24.1 1.4E+02 0.003 30.9 5.3 90 248-358 153-259 (362)
92 PLN02410 UDP-glucoronosyl/UDP- 24.0 1.3E+02 0.0029 32.0 5.2 79 321-401 214-302 (451)
93 PF10281 Ish1: Putative stress 24.0 71 0.0015 22.6 2.3 20 337-356 16-36 (38)
94 TIGR01362 KDO8P_synth 3-deoxy- 23.8 1.7E+02 0.0036 29.8 5.5 54 321-398 162-220 (258)
95 PRK13297 tRNA CCA-pyrophosphor 23.5 1.8E+02 0.0039 30.8 6.0 23 345-367 284-306 (364)
96 COG0537 Hit Diadenosine tetrap 23.1 1.2E+02 0.0027 27.1 4.2 63 118-187 44-110 (138)
97 cd05805 MPG1_transferase GTP-m 22.9 1.1E+02 0.0024 31.9 4.3 32 365-399 168-199 (441)
98 COG0167 PyrD Dihydroorotate de 22.8 62 0.0013 33.4 2.4 33 335-370 162-194 (310)
99 PRK12853 glucose-6-phosphate 1 22.8 49 0.0011 36.0 1.8 36 67-102 88-132 (482)
100 cd02070 corrinoid_protein_B12- 22.2 2.4E+02 0.0052 26.4 6.0 52 341-399 116-171 (201)
101 PRK06049 rpl30p 50S ribosomal 21.9 1.1E+02 0.0024 28.5 3.7 108 64-189 29-148 (154)
102 TIGR01693 UTase_glnD [Protein- 21.9 1.5E+02 0.0031 34.1 5.3 63 198-270 333-406 (850)
103 TIGR00871 zwf glucose-6-phosph 21.8 81 0.0017 34.3 3.1 53 121-186 249-302 (482)
104 cd01636 FIG FIG, FBPase/IMPase 21.7 49 0.0011 29.9 1.3 17 392-408 76-92 (184)
105 TIGR00140 hupD hydrogenase exp 20.9 2.6E+02 0.0056 24.2 5.6 45 344-390 74-128 (134)
106 PRK05198 2-dehydro-3-deoxyphos 20.8 2.3E+02 0.005 28.9 5.9 23 376-398 206-228 (264)
107 cd02940 DHPD_FMN Dihydropyrimi 20.4 80 0.0017 31.4 2.6 37 334-373 168-204 (299)
108 PF01230 HIT: HIT domain; Int 20.4 1.1E+02 0.0025 24.8 3.1 54 109-163 27-84 (98)
109 PRK13299 tRNA CCA-pyrophosphor 20.3 1.8E+02 0.0038 30.6 5.2 59 198-271 153-224 (394)
110 cd04733 OYE_like_2_FMN Old yel 20.3 2E+02 0.0043 29.1 5.4 93 249-360 144-248 (338)
111 PRK00227 glnD PII uridylyl-tra 20.1 1.4E+02 0.0031 33.9 4.8 59 199-270 289-358 (693)
No 1
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=100.00 E-value=5e-179 Score=1354.66 Aligned_cols=370 Identities=86% Similarity=1.390 Sum_probs=365.4
Q ss_pred CCCCCCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHH
Q 036421 53 TKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIR 132 (422)
Q Consensus 53 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~ 132 (422)
..|+|+|||++||+|||+|||+++|++|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus 18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir 97 (474)
T PLN02291 18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR 97 (474)
T ss_pred CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHHH
Q 036421 133 DTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSV 212 (422)
Q Consensus 133 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~Sa 212 (422)
+|+++|+|||.||+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus 98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa 177 (474)
T PLN02291 98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA 177 (474)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccc
Q 036421 213 ATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYE 292 (422)
Q Consensus 213 aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE 292 (422)
+|||+||+|.+|||||||++++||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus 178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE 257 (474)
T PLN02291 178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE 257 (474)
T ss_pred HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999987546889999999999999999
Q ss_pred cccccccCCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 036421 293 QALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM 372 (422)
Q Consensus 293 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 372 (422)
+||||+|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus 258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm 337 (474)
T PLN02291 258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM 337 (474)
T ss_pred hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421 373 GAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422 (422)
Q Consensus 373 Ga~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il 422 (422)
||+||+++||+||+||+++||+|||+||||||||++|++|||||+|++|+
T Consensus 338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il 387 (474)
T PLN02291 338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIR 387 (474)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999985
No 2
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=100.00 E-value=8.5e-179 Score=1347.40 Aligned_cols=367 Identities=62% Similarity=1.057 Sum_probs=364.0
Q ss_pred CCCCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHhH
Q 036421 55 WTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDT 134 (422)
Q Consensus 55 Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~k 134 (422)
|+|+|||++||+|||+|||+++|++|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus 1 w~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCAE~F~~~~~~~i~~k 80 (443)
T TIGR01358 1 WSPQSWRSKPAAQQPTYPDAGALEAVLDTLRSLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCAESFKDCTADHIRNK 80 (443)
T ss_pred CCchhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCccccCchhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 036421 135 FRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVAT 214 (422)
Q Consensus 135 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~SaaT 214 (422)
+++|+|||+||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||++|
T Consensus 81 ~~~llqMa~vl~~~~~~PVVkVGRiAGQyAKPRS~~~E~~~G~~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~saat 160 (443)
T TIGR01358 81 LRVLLQMAVVLTYGASLPVVKVGRIAGQYAKPRSAPTETRDGVTLPSYRGDIINGPAFTEAARVPDPRRLVRAYHQSAAT 160 (443)
T ss_pred HHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCChhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccc
Q 036421 215 LNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQA 294 (422)
Q Consensus 215 Ln~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~a 294 (422)
||+||+|.+|||||||++++||++|+++++.+++|++++++|++||+||++||++.++ .+++++||||||||||+||+|
T Consensus 161 ln~lRa~~~gg~adl~~~~~W~~~f~~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~-~l~~~~~~TSHEaLlL~YE~a 239 (443)
T TIGR01358 161 LNLVRALTTGGYADLHQVHYWNLEFVGYSPAGARYEKLASEIDEALRFMSACGLAPRY-NLQTVEFYTSHEALLLPYEEA 239 (443)
T ss_pred HHHHHHHhcCCchhhcccchhhhhhhhcCchhhHHHHHHHHHHHHHHHHHHcCCCccc-ccCcCceeechHhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999876 588999999999999999999
Q ss_pred cccccCCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccCh
Q 036421 295 LTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGA 374 (422)
Q Consensus 295 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa 374 (422)
|||.|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||||
T Consensus 240 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l~~L~~~LnP~~epGRlTLI~RmGa 319 (443)
T TIGR01358 240 LTRVDSRSGGWFDLSAHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDELLRLIERLNPENEPGRLTLISRMGA 319 (443)
T ss_pred hhcccCCCCCcccccccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421 375 ENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422 (422)
Q Consensus 375 ~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il 422 (422)
+||+++||+||+||+++||+|||+||||||||++|++|+|||+|++|+
T Consensus 320 ~kV~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il 367 (443)
T TIGR01358 320 DKIADKLPPLLRAVKAAGRRVVWVCDPMHGNTEEAASGYKTRRFDDIR 367 (443)
T ss_pred hHHHHhHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHH
Confidence 999999999999999999999999999999999999999999999985
No 3
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=100.00 E-value=1.2e-175 Score=1323.20 Aligned_cols=369 Identities=59% Similarity=1.044 Sum_probs=301.3
Q ss_pred CCCCCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHh
Q 036421 54 KWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRD 133 (422)
Q Consensus 54 ~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~ 133 (422)
+|+|+||+++||+|||+|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus 1 ~W~p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~I~~ 80 (439)
T PF01474_consen 1 EWSPSSWRSKPAAQQPEYPDPDALAEVLAKLASLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCAESFAECTADHIRD 80 (439)
T ss_dssp ---HHHHHTS--SS---S-HHHHH-HHHHHHTTS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS--STT-SHHHHHH
T ss_pred CCChhhHHhCCcccCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcccChhhcChHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 036421 134 TFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVA 213 (422)
Q Consensus 134 k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~Saa 213 (422)
|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus 81 k~~~Llqma~vL~~~~~~PVVrVGRiAGQyAKPRS~~~E~vdG~~LPsyRGD~VN~~~~~~~aR~PDP~RlL~aY~~Saa 160 (439)
T PF01474_consen 81 KFKLLLQMALVLTYGAGKPVVRVGRIAGQYAKPRSSPTETVDGVELPSYRGDIVNGPEFTPEARRPDPQRLLRAYFHSAA 160 (439)
T ss_dssp HHHHHHHHHHHHHHHHTS-EEEEEEBSS------S-SB----TTSSB----TTTS-SSSSHHHHS--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEechhhhcccCCCCCCccCCCCccCcccccccccCCCCChhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCccceeecccccccccc
Q 036421 214 TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTAN-HPIMTSTEFWTSHECLLLPYE 292 (422)
Q Consensus 214 TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~-~~~~~~~~~~tSHEaLlL~YE 292 (422)
|||+||+|++|||||||++++||++|+++|+.+++|++++++|++||+||++||++.+ ++.+.+++||||||||||+||
T Consensus 161 tLn~lRa~~~~G~Adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~g~~~~~~~~~~~~~~~tSHEaLlL~YE 240 (439)
T PF01474_consen 161 TLNLLRAFASGGFADLHHVHQWNLDFVRNSPLGERYEELADEIDDALRFMRACGVDSDSSPALRTVDFYTSHEALLLDYE 240 (439)
T ss_dssp HHHHHHHHHTSCCG-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTT-----GGGST---EEEEEE---HHHH
T ss_pred HHHHHHHHhcCChhhhcccccchhhhhcCChhhhHHHHHHHHHHHHHHHHHHcCCCccccccccccccccchHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999975 566899999999999999999
Q ss_pred cccccccCCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 036421 293 QALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM 372 (422)
Q Consensus 293 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 372 (422)
+||||.|+.+|.||+|||||+||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+||
T Consensus 241 ~altR~d~~~g~~y~~SaH~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l~~l~~~LnP~~~pGRltlI~Rm 320 (439)
T PF01474_consen 241 EALTRQDSDTGRWYNTSAHFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEELVELCDRLNPDNEPGRLTLITRM 320 (439)
T ss_dssp HHTEEEESSSEEEEETT-SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHHHHHHHHHSTT--TTSEEEEE--
T ss_pred hhhccccCCCCCccccccceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHHHHHHHHhCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421 373 GAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422 (422)
Q Consensus 373 Ga~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il 422 (422)
|++||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|+
T Consensus 321 Ga~~v~~~LP~li~aV~~~g~~vvW~cDPMHGNT~~~~~G~KTR~f~~i~ 370 (439)
T PF01474_consen 321 GADKVRERLPPLIEAVQAAGHPVVWSCDPMHGNTITTSSGYKTRHFDDIL 370 (439)
T ss_dssp -TTTHHHHHHHHHHHHHTTT---EEEE-TSTTSEEE-TTSSEEEBHHHHH
T ss_pred CcHHHHHHhHHHHHHHHHCCCceEEeccCCCCCceECCCCccCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999985
No 4
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-172 Score=1268.84 Aligned_cols=370 Identities=59% Similarity=1.016 Sum_probs=365.3
Q ss_pred CCCCCCCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhH
Q 036421 52 STKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNI 131 (422)
Q Consensus 52 ~~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I 131 (422)
...|+|.||+++|++|||+|||..+|+.|.++|+++|||||++|+++||++||+||.|+|||||||||||||+++++++|
T Consensus 2 ~~~w~p~swr~kpi~Q~p~ypd~~~l~~v~a~L~~~PplvfAgEar~Lk~~LA~Va~g~AfLLQgGDCAEsf~~~~a~~I 81 (445)
T COG3200 2 PTTWLPNSWRAKPIQQQPTYPDAQALARVEARLRSYPPLVFAGEARRLQEQLARVAKGEAFLLQGGDCAESFADHGADNI 81 (445)
T ss_pred CcccCcchhhcCchhcCCCCCCHHHHHHHHHHHhcCCCeeecHHHHHHHHHHHHHhcCceEEEeCCcHHHHHHhcccHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHH
Q 036421 132 RDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQS 211 (422)
Q Consensus 132 ~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~S 211 (422)
|+++|+|+|||+||+|++++|||||||||||||||||+++|+.+|++|||||||||||.||++++|.|||+||++||.+|
T Consensus 82 rd~frvllqMAvVLtfa~~~PVvKVgRIAGQfAKPRSs~~e~~g~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qs 161 (445)
T COG3200 82 RDNFRVLLQMAVVLTFAGSRPVVKVGRIAGQFAKPRSSDHEQLGGVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQS 161 (445)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEeeeecccccCCCCCchhccCCeeccccccccccCccCChhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeeccccccccc
Q 036421 212 VATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPY 291 (422)
Q Consensus 212 aaTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~Y 291 (422)
++|||+||+|++||||||+.+|+||++||++||++++|+.++++|+++|+||+|||++. .+.++.++||||||||||+|
T Consensus 162 aAtlNLlRafa~gG~A~L~~vh~W~l~Fv~~sp~~~rY~~la~~I~~~l~FM~A~Gv~~-~~~lre~~~ytSHEaLLL~Y 240 (445)
T COG3200 162 AATLNLLRAFASGGLADLENVHRWNLGFVKNSPQGARYEALADRISETLAFMRACGVTN-DPSLRETEFYTSHEALLLDY 240 (445)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCC-CcccccccchhhhHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999987 36689999999999999999
Q ss_pred ccccccccCCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 036421 292 EQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR 371 (422)
Q Consensus 292 E~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R 371 (422)
|+||||.|+.+|.||+|||||+||||||||+|||||||+|||.|||||||||+++||+|++||++|||+|||||||||+|
T Consensus 241 Eeam~R~ds~s~~~Yd~SaHmlWIGeRTRq~D~AHVe~~rgv~NPig~K~GP~~~~d~ll~l~d~LnP~nepGRLtLi~R 320 (445)
T COG3200 241 EEAMLRLDSTSGQWYDTSAHMLWIGERTRQPDGAHVEFLRGVKNPIGVKIGPSMTPDELLELIDRLNPHNEPGRLTLIAR 320 (445)
T ss_pred HHHHhhhccCCCceeccccceeeecccccCCChhHHHHHHhcCCccccccCCCCCHHHHHHHHHhcCCCCCCceEEeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421 372 MGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422 (422)
Q Consensus 372 mGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il 422 (422)
||++||.++||+||+||+++||+|||+||||||||+++++|||||+||.|+
T Consensus 321 mG~dKV~d~LP~li~av~~eG~~VvWs~DPMHGNTi~a~~gyKTR~fd~Il 371 (445)
T COG3200 321 MGADKVGDRLPPLVEAVEAEGHQVIWSSDPMHGNTIKASTGYKTRPFDRIL 371 (445)
T ss_pred hcchHHhhhhhHHHHHHHHcCCceEEecCCCCCceeecCCCCccccHHHHH
Confidence 999999999999999999999999999999999999999999999999885
No 5
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.45 E-value=0.02 Score=57.70 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=62.0
Q ss_pred CcceeecccccCCCchhHHHh---hhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChH
Q 036421 310 AHMVWVGERTRQLDGAHVEFL---RGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR---MGAENMRVKLPH 383 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVefl---rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~ 383 (422)
..++|||-|.=| --++| .+...||=||=|..++|+|.+..++++.-...+ +|.|+-| ||..+.---+-.
T Consensus 107 ~DilQIgAr~~r----qtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~-~viLcERG~tFgy~~lv~D~r~ 181 (290)
T PLN03033 107 ADIIQIPAFLCR----QTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDPRN 181 (290)
T ss_pred CcEEeeCcHHHH----HHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh
Confidence 369999999754 25566 667789999999999999999999999655443 6777666 455432111111
Q ss_pred HHHHHHHCCCceEEEcCCCCC
Q 036421 384 LIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 384 LI~AV~~~G~~ViW~cDPMHG 404 (422)
|-.++..+.||| |||=|+
T Consensus 182 -ip~mk~~~lPVI--~DpSHs 199 (290)
T PLN03033 182 -LEWMREANCPVV--ADITHS 199 (290)
T ss_pred -hHHHHhcCCCEE--EeCCcc
Confidence 123356899995 899994
No 6
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=94.03 E-value=0.13 Score=53.27 Aligned_cols=99 Identities=23% Similarity=0.293 Sum_probs=75.7
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHH-hCCCC-----CCCcE-----------EEEecc
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVI-LNPKN-----KPGRI-----------TVIVRM 372 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRl-----------TLI~Rm 372 (422)
-.|.+||-||-+ +--|.|+++|+.-|||+|=|.+.+.++.+.-+.. =+|+. +-|+. -||-|-
T Consensus 158 vs~~aIGARt~e-sq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~H~fl~~~~~G~~~iv~t~GN~~~hliLRG 236 (353)
T PRK12755 158 ISWGAIGARTTE-SQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQPHRFLGINQEGQVALLETRGNPDGHVILRG 236 (353)
T ss_pred hhheeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCCCeeeeeCCCCcEEEEECCCCCCEEEEeCC
Confidence 447889999988 7999999999999999999999999998877632 24543 33433 455665
Q ss_pred Ch---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 373 GA---ENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 373 Ga---~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
|. .--++.+=.....+.++|.+.-=|.||=|||..+-
T Consensus 237 g~~~pNy~~~~i~~a~~~l~k~~l~~~vmVD~SH~Ns~K~ 276 (353)
T PRK12755 237 GKKGPNYDAASVAACEAQLEKAGLRPRLMIDCSHANSGKD 276 (353)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcEEecCCccccccc
Confidence 52 12335556677788899999999999999998763
No 7
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=93.94 E-value=0.03 Score=55.50 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=73.0
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCC-CCCc--EEEEeccCh--hHHHhhChHH
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKN-KPGR--ITVIVRMGA--ENMRVKLPHL 384 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~-~pGR--lTLI~RmGa--~~v~~~LP~L 384 (422)
.-++|||-||=+ +-.|.+.+++..-||++|=|..++++|.+.-.+.+-=.. ..|= --.|.|+|. .....-+-.+
T Consensus 108 vd~lqIgAr~~~-n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~ 186 (270)
T PF00793_consen 108 VDWLQIGARLME-NQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAV 186 (270)
T ss_dssp ESEEEE-GGGTT-CHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHH
T ss_pred CcEEEECcchhc-CHHHHHHhccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHH
Confidence 349999999876 789999999999999999999999999998888763222 1221 235778887 5555556667
Q ss_pred HHHHHHCCCceEEEcCCCCCCcccC
Q 036421 385 IRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 385 I~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
...-+.++.|| ++||=|+|..+.
T Consensus 187 ~~~~~~~~lpV--ivD~SH~~~~~~ 209 (270)
T PF00793_consen 187 PIMKKKTHLPV--IVDPSHANSRKD 209 (270)
T ss_dssp HHHHHHTSSEE--EEEHHHHTTTCG
T ss_pred HHHHHhcCCCE--EECchhhhcccc
Confidence 77777776766 589999998654
No 8
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=93.93 E-value=0.12 Score=53.30 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=69.8
Q ss_pred ceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHH-HHhCCCC-----CCCc-----------EEEEeccCh
Q 036421 312 MVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLI-VILNPKN-----KPGR-----------ITVIVRMGA 374 (422)
Q Consensus 312 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~-----~pGR-----------lTLI~RmGa 374 (422)
|.+||-||-+ .--|-|+.+|+.-|||.|=|.+.+.++.+.-+ ..=+|+. .-|+ .-||-|-|.
T Consensus 154 w~aIGARt~e-sq~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~ 232 (344)
T TIGR00034 154 WGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAAAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGK 232 (344)
T ss_pred hccccCcccc-CHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHhCCceeeecCCCCcEEEEECCCCCCEEEEecCCC
Confidence 5699999976 35999999999999999999999999988654 3334554 2333 456667553
Q ss_pred h--HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 375 E--NMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 375 ~--~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
. --+.-+-......+.+|.+.-=++||=|||..+.
T Consensus 233 ~pNy~~~di~~~~~~l~~~~lp~~vmVD~SH~ns~k~ 269 (344)
T TIGR00034 233 KPNYSAADVAAAKKQLEKAGLPPHLMIDFSHGNSNKD 269 (344)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCeEEEeCCCcccccc
Confidence 2 0112333444555789999888999999998764
No 9
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=93.59 E-value=0.096 Score=54.13 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=75.8
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHH-HHhCCCCCCC-----c-----------EEEEecc
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLI-VILNPKNKPG-----R-----------ITVIVRM 372 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~~pG-----R-----------lTLI~Rm 372 (422)
--|+|||-||-+ +-.|.+.++|+.-|||+|=|.+.+.++.+.-+ ..=+|+.-.| + .-||-|-
T Consensus 157 vs~~~IGARt~e-sq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRG 235 (349)
T PRK09261 157 ISWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAPHHFLGITKDGRSAIVSTTGNPDCHVILRG 235 (349)
T ss_pred cceeeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCCceeeecCCCCcEEEEECCCCCCEEEEECC
Confidence 459999999998 79999999999999999999999999977665 3335554333 3 3466675
Q ss_pred Ch---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 373 GA---ENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 373 Ga---~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
|. .--++.+=.....+++.|.+.-=+.||=|||..+.
T Consensus 236 g~~~pNy~~~~i~~~~~~l~k~~l~~~v~VD~SH~ns~k~ 275 (349)
T PRK09261 236 GNKGPNYDAESVAEAKERLEKAGLPPRIMIDCSHANSGKD 275 (349)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCEEEECCCcccCcc
Confidence 52 11334555667778888998888999999998754
No 10
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.32 E-value=0.7 Score=45.81 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=65.1
Q ss_pred cceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec----c-ChhHHHhhChHHH
Q 036421 311 HMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR----M-GAENMRVKLPHLI 385 (422)
Q Consensus 311 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R----m-Ga~~v~~~LP~LI 385 (422)
-++|||-|+=+ +-.+++.+++..-||++|=|...+++|++.-++.+-=... ..+.|+-| + +.....-.|- .|
T Consensus 112 d~~kIga~~~~-n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn-~~i~L~~rG~~t~~~Y~~~~vdl~-~i 188 (266)
T PRK13398 112 DMLQIGSRNMQ-NFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGN-ENVVLCERGIRTFETYTRNTLDLA-AV 188 (266)
T ss_pred CEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC-CeEEEEECCCCCCCCCCHHHHHHH-HH
Confidence 49999999865 5679999999999999999999999999999999842222 26999998 3 2322211222 23
Q ss_pred HHHH-HCCCceEEEcCCCCCCc
Q 036421 386 RAVR-NAGQIVTWVSDPMHGNT 406 (422)
Q Consensus 386 ~AV~-~~G~~ViW~cDPMHGNT 406 (422)
...+ ..+.||+ +||=|+|.
T Consensus 189 ~~lk~~~~~pV~--~D~sHs~G 208 (266)
T PRK13398 189 AVIKELSHLPII--VDPSHATG 208 (266)
T ss_pred HHHHhccCCCEE--EeCCCccc
Confidence 3333 4477765 56779986
No 11
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=91.58 E-value=0.48 Score=48.08 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=56.8
Q ss_pred CCCchhHHHhhhc--cCCccee--eCCCCCHHHHHHHHHHhCCCCCCCc-EEEEeccChhHHHhhChHHHHHHHHCCCce
Q 036421 321 QLDGAHVEFLRGV--ANPLGIK--VSNKMDPKELVRLIVILNPKNKPGR-ITVIVRMGAENMRVKLPHLIRAVRNAGQIV 395 (422)
Q Consensus 321 qlDgAHVeflrgI--~NPIGvK--vGP~~~p~elv~L~~~LnP~~~pGR-lTLI~RmGa~~v~~~LP~LI~AV~~~G~~V 395 (422)
|+=|--|+.+-.| .|=-|-+ =|+.++++||.+|++-|-=+|--+= -.|-.=.|.-..-+..-.+|+++++..-++
T Consensus 34 QllGwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~ 113 (308)
T KOG2599|consen 34 QLLGWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNL 113 (308)
T ss_pred hhhccccccccceeeccccCCccccccccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCe
Confidence 4555555555443 3444433 3999999999999999943332211 112233344455566778999999999999
Q ss_pred EEEcCCCCCC
Q 036421 396 TWVSDPMHGN 405 (422)
Q Consensus 396 iW~cDPMHGN 405 (422)
+|+|||.=|.
T Consensus 114 ~wv~DPVmGD 123 (308)
T KOG2599|consen 114 TWVCDPVMGD 123 (308)
T ss_pred EEEeCccccC
Confidence 9999999886
No 12
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=89.60 E-value=1.5 Score=45.09 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=69.4
Q ss_pred cceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-----ChhHHHhhChHHH
Q 036421 311 HMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM-----GAENMRVKLPHLI 385 (422)
Q Consensus 311 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm-----Ga~~v~~~LP~LI 385 (422)
-++|||-|+=| +-.|++.+.+..-||.+|=|.+++++|++.-++.+--... .++.|+-|- +..+-.--|-.+.
T Consensus 178 d~lqIgAr~~~-N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN-~~viL~erG~~tf~~~~~~~ldl~ai~ 255 (335)
T PRK08673 178 DILQIGARNMQ-NFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGN-PNVILCERGIRTFETATRNTLDLSAVP 255 (335)
T ss_pred CeEEECccccc-CHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEECCCCCCCCcChhhhhHHHHH
Confidence 48999999876 7789999999999999999999999999999999953322 269999881 3333333344444
Q ss_pred HHHHHCCCceEEEcCCCCCCcc
Q 036421 386 RAVRNAGQIVTWVSDPMHGNTI 407 (422)
Q Consensus 386 ~AV~~~G~~ViW~cDPMHGNT~ 407 (422)
..-+..+.||+ .||=|++..
T Consensus 256 ~lk~~~~lPVi--~d~sH~~G~ 275 (335)
T PRK08673 256 VIKKLTHLPVI--VDPSHATGK 275 (335)
T ss_pred HHHHhcCCCEE--EeCCCCCcc
Confidence 33344677774 677799865
No 13
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.49 E-value=0.95 Score=46.96 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=66.2
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-----c-ChhHHHhhChH
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR-----M-GAENMRVKLPH 383 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R-----m-Ga~~v~~~LP~ 383 (422)
.-++|||-|.=| +-..++.+....-||-+|=|.+++++|+..-++.+--... .+|.|.-| - +.-+-.--|-.
T Consensus 185 ~d~lqIga~~~~-n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn-~~viL~erG~rtf~s~y~~~~~dl~a 262 (352)
T PRK13396 185 ADVIQVGARNMQ-NFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGN-PNVILCERGIRTFDRQYTRNTLDLSV 262 (352)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEecCCccCcCCCCCCCcCHHH
Confidence 359999999876 5778888889999999999999999999999999953333 36999988 3 33322122333
Q ss_pred HHHHHHH-CCCceEEEcCCCCCC
Q 036421 384 LIRAVRN-AGQIVTWVSDPMHGN 405 (422)
Q Consensus 384 LI~AV~~-~G~~ViW~cDPMHGN 405 (422)
|..+++ .+.|| +|||=|+=
T Consensus 263 -i~~lk~~~~lPV--i~DpsH~~ 282 (352)
T PRK13396 263 -IPVLRSLTHLPI--MIDPSHGT 282 (352)
T ss_pred -HHHHHHhhCCCE--EECCcccC
Confidence 333344 47777 59999953
No 14
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=88.41 E-value=1.2 Score=45.04 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhCC--CCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 036421 342 SNKMDPKELVRLIVILNP--KNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNT 406 (422)
Q Consensus 342 GP~~~p~elv~L~~~LnP--~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT 406 (422)
|..+.+|++.++++-|+= .+.-=...|..=||..+--+.+=.+|++||++.=++.|+|||.=|..
T Consensus 50 g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~ 116 (281)
T COG2240 50 GIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDP 116 (281)
T ss_pred CcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCC
Confidence 456789999999999964 44444677888899888888899999999999888999999988864
No 15
>PRK05756 pyridoxamine kinase; Validated
Probab=87.49 E-value=1.5 Score=42.65 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=52.0
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC
Q 036421 340 KVSNKMDPKELVRLIVILNPKNK--PGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGN 405 (422)
Q Consensus 340 KvGP~~~p~elv~L~~~LnP~~~--pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGN 405 (422)
=.|+.++++++.++++.+.=.+. +....++.=+|.....+.+=.+|+.+++.|..++|+|||.=|.
T Consensus 49 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d 116 (286)
T PRK05756 49 WTGCVMPPSHLTEIVQGIADIGWLGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGD 116 (286)
T ss_pred ccCeeCCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCcccc
Confidence 35778888999999887732222 4557777778888888999999999999888899999998554
No 16
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=86.25 E-value=1.8 Score=41.88 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=51.4
Q ss_pred eCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCC
Q 036421 341 VSNKMDPKELVRLIVIL--NPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPM 402 (422)
Q Consensus 341 vGP~~~p~elv~L~~~L--nP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPM 402 (422)
.|+.++++++.++++.+ .-.-.+....++.=++.....+.+=.+++..++.|..++|+|||-
T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv 113 (286)
T TIGR00687 50 TGQVLPPDELTELVDGLAAINKLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPV 113 (286)
T ss_pred cCeECCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCe
Confidence 58889999999999998 222236677888888888888888999999999888899999993
No 17
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=81.16 E-value=5 Score=41.95 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=72.6
Q ss_pred ceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEE-----------EEeccCh
Q 036421 312 MVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVI-LNPKN-----KPGRIT-----------VIVRMGA 374 (422)
Q Consensus 312 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRlT-----------LI~RmGa 374 (422)
|.+||-||-+ .--|-++.+|+.=|||+|=|...+.+..+.-+.. =+|+. .-|+.. +|-|=|.
T Consensus 159 w~aIGARt~e-sq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~ 237 (356)
T PRK12822 159 WGAIGARTTE-SQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGR 237 (356)
T ss_pred hhhhccchhc-CHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCC
Confidence 5599999976 5689999999999999999999999988766554 36774 455553 4556441
Q ss_pred h--HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 375 E--NMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 375 ~--~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
. --.+.+-...+..+++|.+.-=|.|==|||..|-
T Consensus 238 ~PNY~~~~v~~a~~~l~~~~l~~~vmVDcSH~NS~K~ 274 (356)
T PRK12822 238 EPNYGLSDVTKASKLLHDEGLNHRLIIDCSHGNSQKV 274 (356)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcEEEECCCccCCCC
Confidence 1 1122333456778889999999999999998764
No 18
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=79.18 E-value=6.3 Score=41.15 Aligned_cols=95 Identities=23% Similarity=0.301 Sum_probs=70.0
Q ss_pred eecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh-CCCC-----CCCcEE-----------EEeccCh--
Q 036421 314 WVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVIL-NPKN-----KPGRIT-----------VIVRMGA-- 374 (422)
Q Consensus 314 WIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L-nP~~-----~pGRlT-----------LI~RmGa-- 374 (422)
+||-||-+ .--|-|+.+|+.-|||+|=|...+.+..+.-+..- +|+. .-|+.. +|-|=|.
T Consensus 160 aIGARt~e-sq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~P 238 (348)
T PRK12756 160 AIGARTTE-SQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKP 238 (348)
T ss_pred hhcccccc-CHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCC
Confidence 59999876 55699999999999999999999998877665543 6664 444544 4555442
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 375 ENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 375 ~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
.--.+.+-...++.+++|.+.-=|.|==|||..|-
T Consensus 239 NY~~~~v~~a~~~l~~~~l~~~imVDcSH~NS~K~ 273 (348)
T PRK12756 239 NYHAEDIAAACDTLREFDLPEHLVVDFSHGNCQKQ 273 (348)
T ss_pred CCCHHHHHHHHHHHHHCCCCCcEEEECCCcccCCC
Confidence 11223333456678889999999999999998764
No 19
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=78.78 E-value=5 Score=40.46 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=59.8
Q ss_pred CcceeecccccCCCchhHHHhh---hccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChH
Q 036421 310 AHMVWVGERTRQLDGAHVEFLR---GVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR---MGAENMRVKLPH 383 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflr---gI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~ 383 (422)
..++|||-|.=|= .++|+ +..-||=||=|..++|+|.+--++.+.-...+ +|.|+-| ||..+.---+-
T Consensus 101 ~DilQIgArn~rn----~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~-~vilcERG~tf~y~r~~~D~~- 174 (264)
T PRK05198 101 VDVLQIPAFLCRQ----TDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGND-KIILCERGTSFGYNNLVVDMR- 174 (264)
T ss_pred CcEEEECchhcch----HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCcCCCCeeechh-
Confidence 5699999986431 35554 45789999999999999999999998655433 6777666 44432211111
Q ss_pred HHHHHHHCCCceEEEcCCCCC
Q 036421 384 LIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 384 LI~AV~~~G~~ViW~cDPMHG 404 (422)
-|-.+++.+.||| +||=|+
T Consensus 175 ~vp~~k~~~lPVi--~DpSHs 193 (264)
T PRK05198 175 GLPIMRETGAPVI--FDATHS 193 (264)
T ss_pred hhHHHhhCCCCEE--EeCCcc
Confidence 1234556788885 899996
No 20
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=77.74 E-value=6 Score=39.76 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=58.7
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR---MGAENMRVKLPHLIR 386 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~LI~ 386 (422)
..++|||-|.=|= -.=+.-+.+..-||=||=|..++|+|.+--++.+--...+ +|.|+-| ||..+.---+-. |-
T Consensus 93 vDilQIgArn~rn-~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~-~viLcERG~tf~y~r~~~D~~~-ip 169 (258)
T TIGR01362 93 VDIIQIPAFLCRQ-TDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNK-NILLCERGTSFGYNNLVVDMRS-LP 169 (258)
T ss_pred CcEEEeCchhcch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh-hH
Confidence 5599999985431 1223333444589999999999999999999998555443 6666655 454332111111 22
Q ss_pred HHHHCCCceEEEcCCCCC
Q 036421 387 AVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 387 AV~~~G~~ViW~cDPMHG 404 (422)
.+++.+.||| +||=|+
T Consensus 170 ~~k~~~~PVi--~DpSHs 185 (258)
T TIGR01362 170 IMRELGCPVI--FDATHS 185 (258)
T ss_pred HHHhcCCCEE--EeCCcc
Confidence 3456688885 899996
No 21
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=77.72 E-value=7.1 Score=38.54 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=65.8
Q ss_pred cceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-c----ChhHHHhhChHHH
Q 036421 311 HMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR-M----GAENMRVKLPHLI 385 (422)
Q Consensus 311 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R-m----Ga~~v~~~LP~LI 385 (422)
-++|||-|+=+ +-.+++.+++..-||.||-|..++++|+..-++++-=... .+|.|+-| . +...-.--|-.+.
T Consensus 110 d~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~l~~rG~s~y~~~~~~~~dl~~i~ 187 (260)
T TIGR01361 110 DILQIGARNMQ-NFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGN-GNVILCERGIRTFEKATRNTLDLSAVP 187 (260)
T ss_pred CEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEECCCCCCCCCCcCCcCHHHHH
Confidence 48999998643 4459999999999999999999999999999999953222 36999988 2 4333333344443
Q ss_pred HHHHHCCCceEEEcCCCCCCc
Q 036421 386 RAVRNAGQIVTWVSDPMHGNT 406 (422)
Q Consensus 386 ~AV~~~G~~ViW~cDPMHGNT 406 (422)
.--+..+.||++ ||=|...
T Consensus 188 ~lk~~~~~pV~~--ds~Hs~G 206 (260)
T TIGR01361 188 VLKKETHLPIIV--DPSHAAG 206 (260)
T ss_pred HHHHhhCCCEEE--cCCCCCC
Confidence 333446888875 6668543
No 22
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.41 E-value=6.6 Score=38.75 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
-+++.+...+|-+....+|.| .+++-..|--|+-.+=.+.+- .++.+ |..| + =.|.|.+ .|
T Consensus 136 i~~~i~~~~~aA~~a~~aGfD-------gveih~~~gyL~~qFlsp~~n--~R~d~-yGgs--~---enr~r~~----~e 196 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFD-------GVEIHGAHGYLLSQFLSPYTN--KRTDE-YGGS--L---ENRARFL----LE 196 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEcchhhhHHHHhcCcccc--CCCcc-cCCC--H---HHHHHHH----HH
Confidence 345666666666777778875 457888888777777666642 22333 4433 2 2566643 34
Q ss_pred Hhhhcc-----C-CcceeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH---------hhChHHHHH
Q 036421 329 FLRGVA-----N-PLGIKVSNK------MDPKELVRLIVILNPKNKPGRITVIVRMGAENMR---------VKLPHLIRA 387 (422)
Q Consensus 329 flrgI~-----N-PIGvKvGP~------~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~---------~~LP~LI~A 387 (422)
-++.|+ + ||+||+.|. .+++|.+++++.|.... ..=|.+..+....... .....+++.
T Consensus 197 ii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G-~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (327)
T cd02803 197 IVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAG-VDALHVSGGSYESPPPIIPPPYVPEGYFLELAEK 275 (327)
T ss_pred HHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCcccccccCCCCCCcchhHHHHHH
Confidence 444443 3 999999986 57899999999997554 3455555554432221 222356666
Q ss_pred HHHC-CCceEE
Q 036421 388 VRNA-GQIVTW 397 (422)
Q Consensus 388 V~~~-G~~ViW 397 (422)
+++. +.+|+-
T Consensus 276 ir~~~~iPVi~ 286 (327)
T cd02803 276 IKKAVKIPVIA 286 (327)
T ss_pred HHHHCCCCEEE
Confidence 6554 445543
No 23
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=75.55 E-value=7.2 Score=36.80 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=49.7
Q ss_pred cCCcce-eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHC--CCceEEEcCCC
Q 036421 334 ANPLGI-KVSNKMDPKELVRLIVILNPKN--KPGRITVIVRMGAENMRVKLPHLIRAVRNA--GQIVTWVSDPM 402 (422)
Q Consensus 334 ~NPIGv-KvGP~~~p~elv~L~~~LnP~~--~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~--G~~ViW~cDPM 402 (422)
.|+-++ ..||..+++++.++++.+.=.. .+..+.++.=++.....+.+=.+++..++. |.+| ++||.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~v--v~Dpv 111 (254)
T cd01173 40 NHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLY--VCDPV 111 (254)
T ss_pred CCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceE--EECCC
Confidence 566677 8899999999888888764221 334677777777778888888888888876 5544 79993
No 24
>PTZ00344 pyridoxal kinase; Provisional
Probab=74.28 E-value=8.9 Score=37.74 Aligned_cols=65 Identities=14% Similarity=0.273 Sum_probs=49.5
Q ss_pred eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 036421 340 KVSNKMDPKELVRLIVILNPKN--KPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 340 KvGP~~~p~elv~L~~~LnP~~--~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHG 404 (422)
=.||..+++++.++++.|.-.. ..-...++.=++...+.+.+=.+++..++.|..+.++|||.=|
T Consensus 52 ~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~ 118 (296)
T PTZ00344 52 IKGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMG 118 (296)
T ss_pred ccCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccc
Confidence 3578999999999999885322 2337888888888777777777777777777668899999743
No 25
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=74.00 E-value=9.4 Score=38.85 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=61.3
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR---MGAENMRVKLPHLIR 386 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~LI~ 386 (422)
..++|||-|.=|= -.=++-+..-.-||=||=|..++|+|.+--++.+-=...+ +|.|+-| +|..+.---+ .-|-
T Consensus 107 vDilQIgAr~~rn-tdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~-~vilcERG~~fgy~~~~~D~-~~ip 183 (281)
T PRK12457 107 ADVLQVPAFLARQ-TDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGND-RVILCERGSSFGYDNLVVDM-LGFR 183 (281)
T ss_pred CeEEeeCchhhch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCCCCCCcccch-HHHH
Confidence 6699999986331 1223334445679999999999999999999999655443 7777755 5554431112 1233
Q ss_pred HHHHC--CCceEEEcCCCCC
Q 036421 387 AVRNA--GQIVTWVSDPMHG 404 (422)
Q Consensus 387 AV~~~--G~~ViW~cDPMHG 404 (422)
.+++. +.||| +||=|+
T Consensus 184 ~mk~~~t~lPVi--~DpSHs 201 (281)
T PRK12457 184 QMKRTTGDLPVI--FDVTHS 201 (281)
T ss_pred HHHhhCCCCCEE--EeCCcc
Confidence 46664 88995 899995
No 26
>PLN02978 pyridoxal kinase
Probab=70.75 E-value=8.7 Score=38.35 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHhCCCCC-CCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 036421 343 NKMDPKELVRLIVILNPKNK-PGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 343 P~~~p~elv~L~~~LnP~~~-pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHG 404 (422)
-.++++++..+++-+...+. --.-.+|.-+|..+..+.+-.+++..++.+..+.|+|||.=|
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~ 127 (308)
T PLN02978 65 QVLDGEQLWALIEGLEANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLG 127 (308)
T ss_pred eeCCHHHHHHHHHHHHHcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCccc
Confidence 34667888888887765443 245678889998899899999999999888889999999744
No 27
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=67.89 E-value=9.4 Score=37.13 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=56.3
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHH--------HhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCC
Q 036421 341 VSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENM--------RVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSG 412 (422)
Q Consensus 341 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v--------~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G 412 (422)
|+|.++.+.|.++.+.|+-.+.|==|.+|.++...+- ...+=..++.+++.|..|+ |||=|....++
T Consensus 9 VsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~-----lHGYtHq~~~~ 83 (243)
T PF10096_consen 9 VSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIV-----LHGYTHQYGNS 83 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEE-----EEecceecCCC
Confidence 6899999999999999999999999999999765554 4566677888889999998 99998876433
No 28
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=56.20 E-value=41 Score=28.34 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 036421 339 IKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQ--IVTWVS 399 (422)
Q Consensus 339 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~--~ViW~c 399 (422)
+-.|+.++++++++.+...+|+ +..|+=+-...+ ..++.+++++++.+. ..||+.
T Consensus 31 ~~lg~~~~~~~l~~~~~~~~pd-----vV~iS~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 31 IDLGVDVPPEEIVEAAKEEDAD-----AIGLSGLLTTHM-TLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEeccccccH-HHHHHHHHHHHHcCCCCCeEEEE
Confidence 4459999999999999999886 667766533344 668999999999986 456665
No 29
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=55.92 E-value=18 Score=37.54 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccceeecc-cccccccccccccccCCCCCccccCCcceeecccccCCCchhHHH
Q 036421 251 ELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSH-ECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEF 329 (422)
Q Consensus 251 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSH-EaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef 329 (422)
++.+...+|-.....+|.| .+++-..| -.|+=.+=++.|- .++.+ |-.| +=.|+|-+ +|-
T Consensus 147 ~ii~~f~~AA~ra~~AGfD-------gVEih~ah~GyLl~qFLSp~~N--~RtDe-yGGs-----lenR~rf~----~ei 207 (382)
T cd02931 147 TFVGKFGESAVIAKEAGFD-------GVEIHAVHEGYLLDQFTISLFN--KRTDK-YGGS-----LENRLRFA----IEI 207 (382)
T ss_pred HHHHHHHHHHHHHHHcCCC-------EEEEeccccChHHHHhcCCccC--CCCCc-CCCC-----HHHHhHHH----HHH
Confidence 3444555555566667764 45788888 4555445444441 22333 4322 23588764 788
Q ss_pred hhhccC------CcceeeCC--------------------CCCHHHHHHHHHHhCC
Q 036421 330 LRGVAN------PLGIKVSN--------------------KMDPKELVRLIVILNP 359 (422)
Q Consensus 330 lrgI~N------PIGvKvGP--------------------~~~p~elv~L~~~LnP 359 (422)
+++|++ |||||+.| ..+++|.+++++.|+-
T Consensus 208 i~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~ 263 (382)
T cd02931 208 VEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEE 263 (382)
T ss_pred HHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHH
Confidence 888864 89999986 3578999999998863
No 30
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.98 E-value=25 Score=26.56 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEE
Q 036421 359 PKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTW 397 (422)
Q Consensus 359 P~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW 397 (422)
+...+|.-.++.|+-.+... .++++.++.|..|+|
T Consensus 36 ~~~~~~~~~v~i~v~~~~~~----~~~~~L~~~G~~v~~ 70 (72)
T cd04883 36 PSKEEDNKILVFRVQTMNPR----PIIEDLRRAGYEVLW 70 (72)
T ss_pred ccCCCCeEEEEEEEecCCHH----HHHHHHHHCCCeeeC
Confidence 44456777777787433322 899999999999999
No 31
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.86 E-value=22 Score=35.55 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=65.1
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc--ChhHHHh-hCh-HHH
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM--GAENMRV-KLP-HLI 385 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm--Ga~~v~~-~LP-~LI 385 (422)
.-++|||-|+=+ +-..++.+.+..-||-||=|..++++|+...++++--... .+|.|+-|. |-..-.+ .+- .-|
T Consensus 99 vdilqIgs~~~~-n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn-~~i~L~eRg~~~Y~~~~~n~~dl~ai 176 (250)
T PRK13397 99 LDVIQVGARNMQ-NFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK-SNIILCERGVRGYDVETRNMLDIMAV 176 (250)
T ss_pred CCEEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEccccCCCCCccccccCHHHH
Confidence 349999999765 4668888888899999999999999999999999963333 379999876 3222111 111 223
Q ss_pred HHHHH-CCCceEEEcCCCCC
Q 036421 386 RAVRN-AGQIVTWVSDPMHG 404 (422)
Q Consensus 386 ~AV~~-~G~~ViW~cDPMHG 404 (422)
..+++ .+.||+ +||=|.
T Consensus 177 ~~lk~~~~lPVi--vd~SHs 194 (250)
T PRK13397 177 PIIQQKTDLPII--VDVSHS 194 (250)
T ss_pred HHHHHHhCCCeE--ECCCCC
Confidence 34444 778876 688895
No 32
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=54.20 E-value=23 Score=36.25 Aligned_cols=90 Identities=23% Similarity=0.315 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCchh
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGAH 326 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAH 326 (422)
-+++.+...+|-.....+|.| .+++...|--|+=.|=++.+ |.|. |-.| +=.|+|-+
T Consensus 137 I~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlSp~~N~RtD~-----yGGs-----lenR~Rf~---- 195 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFD-------VIEIHGAHGYLINEFLSPLSNKRTDE-----YGGS-----PENRYRFL---- 195 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhcCCccCCcCCC-----CCCC-----HHHHHHHH----
Confidence 334555555555666667764 56889999888777766765 4443 4333 11466642
Q ss_pred HHHhhhccC----CcceeeCC------CCCHHHHHHHHHHhCC
Q 036421 327 VEFLRGVAN----PLGIKVSN------KMDPKELVRLIVILNP 359 (422)
Q Consensus 327 VeflrgI~N----PIGvKvGP------~~~p~elv~L~~~LnP 359 (422)
.|-+++|++ ||+||+.+ +.+++|.+++++.|.-
T Consensus 196 ~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~ 238 (337)
T PRK13523 196 REIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKE 238 (337)
T ss_pred HHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHH
Confidence 344444444 89999998 5789999999999953
No 33
>PLN03007 UDP-glucosyltransferase family protein
Probab=53.61 E-value=30 Score=36.71 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=28.2
Q ss_pred cEEEEeccChhH--HHhhChHHHHHHHHCCCceEEEcCC
Q 036421 365 RITVIVRMGAEN--MRVKLPHLIRAVRNAGQIVTWVSDP 401 (422)
Q Consensus 365 RlTLI~RmGa~~--v~~~LP~LI~AV~~~G~~ViW~cDP 401 (422)
|=++..=||... -.+.|-.++++...+|++++|++.+
T Consensus 285 ~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~ 323 (482)
T PLN03007 285 DSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRK 323 (482)
T ss_pred CceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 445566678542 2567889999999999999999985
No 34
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=53.02 E-value=23 Score=37.28 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHHHH-----------HHHHHHHHhc-CCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHH
Q 036421 197 RIPDPHRMIRAYSQSVA-----------TLNLLRAFAT-GGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMA 264 (422)
Q Consensus 197 R~PDP~Rll~aY~~Saa-----------TLn~lRa~~~-gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~ 264 (422)
=.-||-|||+|+..++. |++.|+.... +.++.+..-. ...+...+...-...+++|.
T Consensus 128 F~EDPLRILRa~RFaarL~~~gF~ie~eT~~~i~~~~~~~~L~~vs~ER-----------I~~El~kiL~~p~~~l~~L~ 196 (360)
T PRK13296 128 FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLTRER-----------LHIEFVKALNNPKIFFTTLK 196 (360)
T ss_pred cccCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhhhhhcCCHHH-----------HHHHHHHHHhChHHHHHHHH
Confidence 36799999999999884 8888887643 3333222211 12233333334456788899
Q ss_pred HhcCCCC
Q 036421 265 AAGLTAN 271 (422)
Q Consensus 265 a~G~~~~ 271 (422)
.+|+-..
T Consensus 197 ~~glL~~ 203 (360)
T PRK13296 197 ELEALKI 203 (360)
T ss_pred HcCCHHH
Confidence 9988543
No 35
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=50.92 E-value=18 Score=36.46 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=31.1
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 036421 335 NPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMG 373 (422)
Q Consensus 335 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG 373 (422)
=||.||++|..+.+++.++++.|.-...-| |+++.|+.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~-I~~~n~~~ 240 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDG-IIATNTTI 240 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEECCcc
Confidence 499999999999899999999987555444 88888753
No 36
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=50.73 E-value=45 Score=30.34 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=40.7
Q ss_pred eeeCCCCCHH---HHHHHHHHhCCCCCCCcEEEEe--ccChhH-----HHhhChHHHHHHHHCCCce-EEEcCC
Q 036421 339 IKVSNKMDPK---ELVRLIVILNPKNKPGRITVIV--RMGAEN-----MRVKLPHLIRAVRNAGQIV-TWVSDP 401 (422)
Q Consensus 339 vKvGP~~~p~---elv~L~~~LnP~~~pGRlTLI~--RmGa~~-----v~~~LP~LI~AV~~~G~~V-iW~cDP 401 (422)
+|.++...++ .++++++..+.....+|+.+++ -.|.+. ..-..+.+|+..++.|.+| +|-+|=
T Consensus 86 iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sf~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 86 IKQDSPEYDEFLAKVLKELRVYFDYDLRGKVVLSSFNALGVDYYNFSSKLIKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred eCCCCCcchHHHHHHHHHHHHcCCcccCCCEEEEeecccCCChhcccchhhcCHHHHHHHHHCCCEEEEEeeCC
Confidence 5655544444 4444444444322667999888 345443 2346899999999999985 798763
No 37
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=50.34 E-value=46 Score=31.05 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=53.6
Q ss_pred HHHHHHHh--CCCCCCCcEEEEeccChh---HHHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCccc
Q 036421 350 LVRLIVIL--NPKNKPGRITVIVRMGAE---NMRVKLPHLIRAVRNAGQIVTWVSDP-MHGNTIKAPSGLKT 415 (422)
Q Consensus 350 lv~L~~~L--nP~~~pGRlTLI~RmGa~---~v~~~LP~LI~AV~~~G~~ViW~cDP-MHGNT~~t~~G~KT 415 (422)
|+++||.+ +|.+ .=.+.|+|.--.. +-++.|-.|=+.....|..+.|..|+ +|.--+.+++|.+.
T Consensus 38 l~~F~El~vk~~~~-~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~~~~f~~tiHDR~I~~~nGw~I 108 (148)
T cd02685 38 FLRFCELVVKPPCE-LKYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEFTWEFSDTIHDREIRTDNGWII 108 (148)
T ss_pred HHHHHHHHhcCccc-eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEECCCccceEEEecCCeEE
Confidence 77777777 5555 5599999998766 44677888999999999999999986 89999999999764
No 38
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=48.33 E-value=55 Score=34.10 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=63.9
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-------ChhHHHhhCh
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM-------GAENMRVKLP 382 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm-------Ga~~v~~~LP 382 (422)
.-++|||-|.=+ +-..++++++..-||-+|=|..++++|+..-++.+-=... .+|.|.-|. |...+ -|-
T Consensus 202 vd~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~L~erg~s~yp~~~~~~l--dl~ 277 (360)
T PRK12595 202 VDVIQIGARNMQ-NFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGN-GQIILCERGIRTYEKATRNTL--DIS 277 (360)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCC-CCEEEECCccCCCCCCCCCCc--CHH
Confidence 448999998755 4578888888899999999999999999999999952222 368888765 34333 233
Q ss_pred HHHHHHHHCCCceEEEcCCCCC
Q 036421 383 HLIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 383 ~LI~AV~~~G~~ViW~cDPMHG 404 (422)
.+..--+..+.||++ ||=|.
T Consensus 278 ~i~~lk~~~~~PV~~--d~~Hs 297 (360)
T PRK12595 278 AVPILKQETHLPVMV--DVTHS 297 (360)
T ss_pred HHHHHHHHhCCCEEE--eCCCC
Confidence 333333347888875 66684
No 39
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=47.91 E-value=28 Score=35.43 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
-+++.+...+|-.....+|.| .+++-..|--||=.+=.+.+ +.++++ |..| +=.|.|.+ +|
T Consensus 132 I~~i~~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~--N~RtD~-yGGs-----lenR~r~~----~e 192 (353)
T cd02930 132 IEQTIEDFARCAALAREAGYD-------GVEIMGSEGYLINQFLAPRT--NKRTDE-WGGS-----FENRMRFP----VE 192 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCcc--CCCcCc-cCCC-----HHHHhHHH----HH
Confidence 344555555666666777764 45788888777766666643 112233 4433 33677765 55
Q ss_pred HhhhccC------CcceeeCCC------CCHHHHHHHHHHhCCCC
Q 036421 329 FLRGVAN------PLGIKVSNK------MDPKELVRLIVILNPKN 361 (422)
Q Consensus 329 flrgI~N------PIGvKvGP~------~~p~elv~L~~~LnP~~ 361 (422)
.++.|++ ||+||+++. .+++|.+++++.|....
T Consensus 193 iv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G 237 (353)
T cd02930 193 IVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAG 237 (353)
T ss_pred HHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcC
Confidence 5555554 578888864 68999999999997654
No 40
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.68 E-value=74 Score=27.41 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=41.8
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 036421 339 IKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQ--IVTWVS 399 (422)
Q Consensus 339 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~--~ViW~c 399 (422)
+-.|+..+++++++.+...+|+ +..|+=+-. .-.+.++.+++++++.|. .++|++
T Consensus 31 i~lG~~vp~e~~~~~a~~~~~d-----~V~iS~~~~-~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 31 IYTGLRQTPEEIVEAAIQEDVD-----VIGLSSLSG-GHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEcccch-hhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 5689999999999999988876 455554433 344668999999999977 356665
No 41
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=46.47 E-value=14 Score=34.33 Aligned_cols=108 Identities=24% Similarity=0.397 Sum_probs=70.7
Q ss_pred cccCCCCCCHHHHHHHHHHhccCCCccCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHhHHHH--HHH
Q 036421 65 ALQIPEYPNKAELDSVLDTLSSFPPIVFAGES--RKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRV--LLQ 140 (422)
Q Consensus 65 a~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei--~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~k~~~--Llq 140 (422)
.-|....+|..+ +...|+...|+|+.+|+ +.+++.+-. +|+ +.||. ..|.+.|.+++.+ +..
T Consensus 28 i~~~V~v~~tp~---~~gML~kV~~yV~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~ied 93 (152)
T TIGR01309 28 VNHCVLYPETPT---YLGMLQKVKDYVTWGEIDEDTLELLIRK--RGR---LVGGD------KVTDEYVKEVTGYESVDE 93 (152)
T ss_pred CCCEEEEeCCHH---HHHHHHHhHhheeEecCCHHHHHHHHHH--hcc---ccCCC------cCCHHHHHHHcCCccHHH
Confidence 335555666644 56667777899999985 456666665 554 23663 4666778887654 667
Q ss_pred HHHHHhhcC-------CCceEEeccccccCCCCCCCcccccCCeecccccCCcCCC
Q 036421 141 MSVVLMFGG-------QMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG 189 (422)
Q Consensus 141 Ma~vL~~g~-------~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg 189 (422)
|+..|..+. =+|+.|+-=--|-|.+-+..++ .+|-.+- ||||-||.
T Consensus 94 l~~~i~~~~~~f~~~~~~~~FrL~pPr~G~~~~~k~~~--~~gG~~G-~r~~~In~ 146 (152)
T TIGR01309 94 LAKALVEGEIKLSEAGLKPVFRLHPPRKGFKGGIKTPY--RDGGELG-YRGEKINE 146 (152)
T ss_pred HHHHHHcCCCCccccCccCceeCCCCCccccccccccc--ccCCCCc-ccHHHHHH
Confidence 776665433 4677777766788875555666 2344554 99999986
No 42
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=43.34 E-value=88 Score=32.91 Aligned_cols=110 Identities=24% Similarity=0.303 Sum_probs=76.2
Q ss_pred cCCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEEE----
Q 036421 299 DSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVI-LNPKN-----KPGRITV---- 368 (422)
Q Consensus 299 d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRlTL---- 368 (422)
|+.+..|++--=-|-=||-||-. +--|=|..+|+.=|||-|=|-+-+-.-.+.-+.. =+|+. ..|+..+
T Consensus 146 d~ispqy~aDLiSwgAIGARTtE-SQ~HRe~ASGLs~PvGFKNgTdGnl~vAidAi~AA~~~H~Fl~~~k~G~~aiv~T~ 224 (351)
T COG0722 146 DPISPQYLADLISWGAIGARTTE-SQIHRELASGLSCPVGFKNGTDGNLKVAIDAIRAAAHPHHFLSVTKDGQVAIVETS 224 (351)
T ss_pred ccCcHHHHHHHHHHhhccccchh-hHHHHHHhhccCCCccccCCCCccHHHHHHHHHHhhCCceeeecCCCCceEEEEcc
Confidence 34445554322223349999975 7789999999999999999988877666555543 36764 6666654
Q ss_pred -------EeccChh---HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 369 -------IVRMGAE---NMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 369 -------I~RmGa~---~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
|-|=|.+ -=.+.+-.-++..+++|.+.--|+|==|||.-|-
T Consensus 225 GNp~~HvILRGG~~~PNYda~~v~~~~~~l~~~gl~~~lmID~SH~NS~K~ 275 (351)
T COG0722 225 GNPDGHVILRGGKKGPNYDAASVAAACEQLEKAGLPPRLMIDCSHANSGKD 275 (351)
T ss_pred CCCCceEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCeEEEeccCCccccC
Confidence 6676632 1122233456777899999999999999998653
No 43
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.12 E-value=41 Score=34.94 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCchhH
Q 036421 250 QELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGAHV 327 (422)
Q Consensus 250 ~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHV 327 (422)
+++.+...+|-+..+.+|.| .+++-..|--|+=.+=++.+ |.|. |-.| +=.|+|-+ .
T Consensus 140 ~~ii~~f~~AA~~a~~aGfD-------gVeih~ahGyLl~qFLSp~~N~RtDe-----YGGs-----lenR~Rf~----~ 198 (361)
T cd04747 140 DDVIAAFARAAADARRLGFD-------GIELHGAHGYLIDQFFWAGTNRRADG-----YGGS-----LAARSRFA----A 198 (361)
T ss_pred HHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCCCCCCCCC-----CCCC-----HHHHHHHH----H
Confidence 34555555555556667764 56889999888877777766 5543 4333 23577743 4
Q ss_pred HHhhhccC------CcceeeCC----------CCCHHHHHHHHHHhC
Q 036421 328 EFLRGVAN------PLGIKVSN----------KMDPKELVRLIVILN 358 (422)
Q Consensus 328 eflrgI~N------PIGvKvGP----------~~~p~elv~L~~~Ln 358 (422)
|-+++|++ |||||++| ..+++|.+++|..|+
T Consensus 199 eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~ 245 (361)
T cd04747 199 EVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV 245 (361)
T ss_pred HHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH
Confidence 55555543 89999997 368899999988886
No 44
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.36 E-value=7 Score=41.42 Aligned_cols=38 Identities=29% Similarity=0.606 Sum_probs=26.5
Q ss_pred ccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCC--cccCCCCcccccC
Q 036421 371 RMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGN--TIKAPSGLKTRSF 418 (422)
Q Consensus 371 RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGN--T~~t~~G~KTR~f 418 (422)
|+||+-+...+|. .-||++||+-+| ++-...|+|.+.+
T Consensus 108 ~~~A~fl~~~~~~----------~~vwis~PtW~NH~~If~~aGl~v~~Y 147 (396)
T COG1448 108 RVAADFLARFFPD----------ATVWISDPTWPNHKAIFEAAGLEVETY 147 (396)
T ss_pred HHHHHHHHHhCCC----------ceEEeCCCCcHhHHHHHHhcCCceeee
Confidence 4555555554442 339999999999 6667789998643
No 45
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.84 E-value=36 Score=33.92 Aligned_cols=49 Identities=31% Similarity=0.424 Sum_probs=35.5
Q ss_pred hhHHHhhhc----cCCcceeeCCCCCHHHHHHHHHHhCCCC-CCCcEEEEeccC
Q 036421 325 AHVEFLRGV----ANPLGIKVSNKMDPKELVRLIVILNPKN-KPGRITVIVRMG 373 (422)
Q Consensus 325 AHVeflrgI----~NPIGvKvGP~~~p~elv~L~~~LnP~~-~pGRlTLI~RmG 373 (422)
...+.++.| .=||.||++|..+.+++.++++.|.-.. -.-=||+|-+++
T Consensus 144 ~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~ 197 (294)
T cd04741 144 ATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLG 197 (294)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCC
Confidence 455666655 3499999999999999999999987541 122377766664
No 46
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.81 E-value=31 Score=35.16 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 036421 335 NPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM 372 (422)
Q Consensus 335 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 372 (422)
=||.||++|..+.+|+.++++.+.-... -=|+++.|.
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Ga-dgi~~~nt~ 248 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGI-DGVIATNTT 248 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCC-cEEEEeCCc
Confidence 4999999999999999999999875544 358888875
No 47
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=40.88 E-value=29 Score=35.49 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=39.6
Q ss_pred cccccCCCchhHHHhhhcc-----------CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 036421 316 GERTRQLDGAHVEFLRGVA-----------NPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMG 373 (422)
Q Consensus 316 GeRTRqlDgAHVeflrgI~-----------NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG 373 (422)
|.|..|-.....+.++.|+ =||.||++|.++-+++.++++.+.-...- =|++|.++-
T Consensus 181 ~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~Gad-Gi~l~NT~~ 248 (335)
T TIGR01036 181 GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGID-GVIATNTTV 248 (335)
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCc-EEEEECCCC
Confidence 5555555555666666653 59999999999988888888877533333 477777764
No 48
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=38.93 E-value=52 Score=33.67 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=37.0
Q ss_pred cccccCCCchhHHHhhhc--cCCcceeeCCCCCHHHHHHHHHHhCCCC---CCCcEEEEeccChhHHHhhChHHHHHHHH
Q 036421 316 GERTRQLDGAHVEFLRGV--ANPLGIKVSNKMDPKELVRLIVILNPKN---KPGRITVIVRMGAENMRVKLPHLIRAVRN 390 (422)
Q Consensus 316 GeRTRqlDgAHVeflrgI--~NPIGvKvGP~~~p~elv~L~~~LnP~~---~pGRlTLI~RmGa~~v~~~LP~LI~AV~~ 390 (422)
|-+.--+|-..|..++.. .=||=+ ||.- .||=. =-...--++..|+|.+|--+
T Consensus 171 gy~~~~~D~~~ip~mk~~~t~lPVi~------------------DpSHsvq~p~~~----g~~s~G~re~v~~larAAvA 228 (281)
T PRK12457 171 GYDNLVVDMLGFRQMKRTTGDLPVIF------------------DVTHSLQCRDPL----GAASGGRRRQVLDLARAGMA 228 (281)
T ss_pred CCCCcccchHHHHHHHhhCCCCCEEE------------------eCCccccCCCCC----CCCCCCCHHHHHHHHHHHHH
Confidence 444556777888888776 456643 3333 23210 00013457889999999999
Q ss_pred CCCceEEE
Q 036421 391 AGQIVTWV 398 (422)
Q Consensus 391 ~G~~ViW~ 398 (422)
.|..=+.+
T Consensus 229 ~GaDGl~i 236 (281)
T PRK12457 229 VGLAGLFL 236 (281)
T ss_pred hCCCEEEE
Confidence 88875554
No 49
>PF14658 EF-hand_9: EF-hand domain
Probab=38.63 E-value=32 Score=28.06 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=26.3
Q ss_pred HHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEE
Q 036421 327 VEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITV 368 (422)
Q Consensus 327 VeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTL 368 (422)
+.|||.+. |++-+-++|..|+..|||++.-|+|-|
T Consensus 21 ~~~Lra~~-------~~~p~e~~Lq~l~~elDP~g~~~~v~~ 55 (66)
T PF14658_consen 21 ITYLRAVT-------GRSPEESELQDLINELDPEGRDGSVNF 55 (66)
T ss_pred HHHHHHHc-------CCCCcHHHHHHHHHHhCCCCCCceEeH
Confidence 35565543 336677899999999999999887753
No 50
>PLN02826 dihydroorotate dehydrogenase
Probab=38.49 E-value=34 Score=36.21 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=36.6
Q ss_pred cccccCCCchhHHHhhhcc-------------CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEE
Q 036421 316 GERTRQLDGAHVEFLRGVA-------------NPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVI 369 (422)
Q Consensus 316 GeRTRqlDgAHVeflrgI~-------------NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI 369 (422)
|.|.-|-.....++++.|. =||-||++|.++.+++.++++.+-=....| |+++
T Consensus 231 glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dG-Ii~~ 296 (409)
T PLN02826 231 GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDG-LIIS 296 (409)
T ss_pred CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCE-EEEE
Confidence 5566565556667777653 499999999999999888888764343333 4444
No 51
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=38.41 E-value=60 Score=33.97 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=24.8
Q ss_pred HHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEE
Q 036421 352 RLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWV 398 (422)
Q Consensus 352 ~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~ 398 (422)
.|...+|....--.+.++.-.+.+.....+|.+++.. |..|+++
T Consensus 158 ~l~~~id~~i~~~~~kVvvD~~~G~~~~~~~~ll~~l---G~~v~~~ 201 (443)
T PRK10887 158 FCKSTFPNELSLRGLKIVVDCANGATYHIAPNVFREL---GAEVIAI 201 (443)
T ss_pred HHHHhcCcccccCCCEEEEECCCchHHHHHHHHHHHh---CCeEEEE
Confidence 3444555311112556666666666667777777544 6677765
No 52
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.92 E-value=41 Score=34.32 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCchhH
Q 036421 250 QELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGAHV 327 (422)
Q Consensus 250 ~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHV 327 (422)
+++.+...+|-.....+|.| .+++-..|--|+=.+=.+.+ |.|. |..| + =.|+|-+ .
T Consensus 140 ~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~N~R~D~-----yGGs--l---enR~r~~----~ 198 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFD-------GVEIHGANGYLIQQFFSPHSNRRTDE-----WGGS--L---ENRMRFP----L 198 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhcCCccCCCCcc-----cCCc--H---HHHHHHH----H
Confidence 34555555555666677764 45788888888766666655 4442 5544 1 2677753 5
Q ss_pred HHhhhccC----------CcceeeCCC------CCHHHHHHHHHHhC
Q 036421 328 EFLRGVAN----------PLGIKVSNK------MDPKELVRLIVILN 358 (422)
Q Consensus 328 eflrgI~N----------PIGvKvGP~------~~p~elv~L~~~Ln 358 (422)
|-++.|++ |||||+++. ++++|.++++..|+
T Consensus 199 eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~ 245 (353)
T cd04735 199 AVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLA 245 (353)
T ss_pred HHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHH
Confidence 66666654 688999883 57899999999996
No 53
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=37.40 E-value=33 Score=34.51 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHhhhccC----CcceeeCCCCCHHHHHHHHHHhCCCCCC
Q 036421 327 VEFLRGVAN----PLGIKVSNKMDPKELVRLIVILNPKNKP 363 (422)
Q Consensus 327 VeflrgI~N----PIGvKvGP~~~p~elv~L~~~LnP~~~p 363 (422)
.+.++.|+. ||.||+.|.++..++.+.++.+.-+...
T Consensus 146 ~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~ 186 (310)
T PRK02506 146 EQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLA 186 (310)
T ss_pred HHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceE
Confidence 456666654 9999999999999999999887665443
No 54
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=37.30 E-value=47 Score=33.87 Aligned_cols=87 Identities=29% Similarity=0.429 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 251 ELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 251 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
++.+..-+|-.....+|.| .+++-..|-.|+=.+=.+.+ |.|. |-.| +=.|+|. .+|
T Consensus 138 ~ii~~f~~AA~ra~~aGfD-------gVeih~ahGyLl~qFlsp~~N~RtD~-----yGGs-----lenR~r~----~~e 196 (343)
T cd04734 138 EIIAAFADAARRCQAGGLD-------GVELQAAHGHLIDQFLSPLTNRRTDE-----YGGS-----LENRMRF----LLE 196 (343)
T ss_pred HHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhhCCCcCCCCCc-----CCCC-----HHHHhHH----HHH
Confidence 3444444455555567764 56889999888766666655 4443 4333 3468775 456
Q ss_pred HhhhccC------CcceeeCCC------CCHHHHHHHHHHhC
Q 036421 329 FLRGVAN------PLGIKVSNK------MDPKELVRLIVILN 358 (422)
Q Consensus 329 flrgI~N------PIGvKvGP~------~~p~elv~L~~~Ln 358 (422)
-++.|+. ||+||+|+. .+++|.+++++.|+
T Consensus 197 iv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~ 238 (343)
T cd04734 197 VLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA 238 (343)
T ss_pred HHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH
Confidence 6666653 688999984 57899999999996
No 55
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.99 E-value=1.2e+02 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEE--------eccChhHHHhhChHHHHHHHH--CCCceEEEc
Q 036421 346 DPKELVRLIVILNPKNKPGRITVI--------VRMGAENMRVKLPHLIRAVRN--AGQIVTWVS 399 (422)
Q Consensus 346 ~p~elv~L~~~LnP~~~pGRlTLI--------~RmGa~~v~~~LP~LI~AV~~--~G~~ViW~c 399 (422)
+.+++.+-++.+- ...| .+.+| .++..+...+.|-.+|+++++ .+.+|+|++
T Consensus 33 ~~~~~~~~l~~~~-~~~p-d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 33 TTRGLLARLDEDV-ALQP-KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred cHHHHHHHHHHHh-ccCC-CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3344444444333 2244 55555 346688999999999999999 788999975
No 56
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=36.69 E-value=78 Score=33.15 Aligned_cols=14 Identities=57% Similarity=0.731 Sum_probs=8.3
Q ss_pred CCCceEEEcCCCCCCc
Q 036421 391 AGQIVTWVSDPMHGNT 406 (422)
Q Consensus 391 ~G~~ViW~cDPMHGNT 406 (422)
.+.+| ++|+|||-+
T Consensus 172 ~~~ki--vvd~~~G~~ 185 (461)
T cd05800 172 AGLKV--VVDPMYGAG 185 (461)
T ss_pred CCceE--EEeCCCCCc
Confidence 44444 467777765
No 57
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.90 E-value=32 Score=33.38 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=28.5
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 036421 335 NPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM 372 (422)
Q Consensus 335 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 372 (422)
=||.||++|..+++|+.++++.|.-.. .-=|+++.|.
T Consensus 163 ~pv~vKl~~~~~~~~~~~~a~~l~~~G-ad~i~~~~~~ 199 (289)
T cd02810 163 IPLLVKLSPYFDLEDIVELAKAAERAG-ADGLTAINTI 199 (289)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEEccc
Confidence 389999999999999999999886443 2345665554
No 58
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=34.83 E-value=5.2e+02 Score=26.49 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHHHhhhccC-
Q 036421 257 DEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVAN- 335 (422)
Q Consensus 257 ~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~N- 335 (422)
.+|-.....+|.| .+++-..|--|+=.+=++.+-. ++.. |..| +-.|.|- -.|-++.|++
T Consensus 155 ~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlSp~~N~--R~D~-yGGs-----lenR~rf----~~eii~air~~ 215 (338)
T cd02933 155 RQAARNAIEAGFD-------GVEIHGANGYLIDQFLRDGSNK--RTDE-YGGS-----IENRARF----LLEVVDAVAEA 215 (338)
T ss_pred HHHHHHHHHcCCC-------EEEEccccchhHHHhcCCccCC--CCCc-CCCc-----HHHhhhH----HHHHHHHHHHH
Confidence 3333444455653 4567777866665565554422 2333 4433 2357664 3566666553
Q ss_pred ----CcceeeCCC---------CCHHHHHHHHHHhCCC
Q 036421 336 ----PLGIKVSNK---------MDPKELVRLIVILNPK 360 (422)
Q Consensus 336 ----PIGvKvGP~---------~~p~elv~L~~~LnP~ 360 (422)
|||||+.+. .+.+|.+++++.|.-.
T Consensus 216 vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~ 253 (338)
T cd02933 216 IGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKR 253 (338)
T ss_pred hCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHc
Confidence 899999753 5889999999999644
No 59
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=33.83 E-value=88 Score=30.25 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCCCC-CcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcC--CCCCCc
Q 036421 347 PKELVRLIVILNPKNKP-GRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSD--PMHGNT 406 (422)
Q Consensus 347 p~elv~L~~~LnP~~~p-GRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cD--PMHGNT 406 (422)
-+++.+|.+.|-|...+ .+|-+-+=.| +.+.+.|=.+-+.++.-+.+.+|+.| ||=|.-
T Consensus 20 ~~~F~~lw~~l~~~~~~Lk~lAiSc~~~-~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDI 81 (183)
T PF12617_consen 20 LAAFERLWQALAPSVPQLKLLAISCPDG-EGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDI 81 (183)
T ss_pred cHHHHHHHHHHHhhhhhccEEEEECCCC-HHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCC
Confidence 36788899999998888 4555544555 55668899999999999999999999 998873
No 60
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=33.17 E-value=56 Score=34.25 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEE
Q 036421 349 ELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWV 398 (422)
Q Consensus 349 elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~ 398 (422)
=+..|++.+|..-.--++.++.-.+.+.....+|.+++ +-|..|+++
T Consensus 161 Y~~~l~~~id~~i~~~~~kVvvD~~~Ga~~~~~~~il~---~lg~~v~~~ 207 (450)
T PRK14314 161 YIVFLKATFPKGLTLKGLKIVLDCANGAAYKVAPAVFE---ELGAEVICI 207 (450)
T ss_pred HHHHHHHhhccccCCCCCEEEEECCCchHHHHHHHHHH---HcCCeEEEe
Confidence 34446666662111124556666666667777887776 447777776
No 61
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=33.06 E-value=26 Score=38.10 Aligned_cols=53 Identities=21% Similarity=0.351 Sum_probs=28.3
Q ss_pred hhhcChhhHH-hHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCc
Q 036421 123 FKEFNANNIR-DTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDN 186 (422)
Q Consensus 123 F~e~~~~~I~-~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~ 186 (422)
...++++.|| .|+|+|..|--+=......-|| =|||.+= .++|..+|.||-+-
T Consensus 260 P~~~~~~~ir~eK~kvL~sir~~~~~~~~~~~V-----rGQY~~g------~~~g~~~~gY~~e~ 313 (495)
T PRK05722 260 PASLDADSIRDEKVKVLRALRPITPEDVKENTV-----RGQYTAG------WIGGKPVPGYREEE 313 (495)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCChhhhhccee-----eccccCC------CCCCCCCCCccCCC
Confidence 3344555555 3556655443211111112234 4999642 24799999999753
No 62
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=32.45 E-value=1.2e+02 Score=23.52 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=41.7
Q ss_pred HhCCCeeEEecCCccchhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEE----ecccccc
Q 036421 106 AALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIK----VGRMAGQ 162 (422)
Q Consensus 106 vA~G~aFlLQgGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVk----VGRiAGQ 162 (422)
++.|...++- =...++|.+++++.+.+-++++.++...|....+.+-+. -|-.+||
T Consensus 16 ~~~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 16 AAPGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CCCCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 3556666666 677889999999999999999999999986544444343 3556776
No 63
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.21 E-value=1.3e+02 Score=26.69 Aligned_cols=28 Identities=32% Similarity=0.598 Sum_probs=23.9
Q ss_pred hHHHhhChHHHHHHHHCCCceEEEcCCC
Q 036421 375 ENMRVKLPHLIRAVRNAGQIVTWVSDPM 402 (422)
Q Consensus 375 ~~v~~~LP~LI~AV~~~G~~ViW~cDPM 402 (422)
+...+.|-.+|+.+++.|.+|+|++.|-
T Consensus 91 ~~~~~~l~~lv~~~~~~~~~vili~~pp 118 (200)
T cd01829 91 EEYRQRIDELLNVARAKGVPVIWVGLPA 118 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4667888899999999999999999864
No 64
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=31.47 E-value=75 Score=36.63 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHHHHH---------HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHH---HHHHHHHHHH
Q 036421 198 IPDPHRMIRAYSQSVA---------TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANR---VDEAIGFMAA 265 (422)
Q Consensus 198 ~PDP~Rll~aY~~Saa---------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~---i~~al~Fm~a 265 (422)
..||.|||+++..++. |++.||+-.. ..+..+-..+...+++.++... ...+|+.|..
T Consensus 340 ~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~----------~~~~~l~~~~~eR~ef~kiL~~~~~~~~~l~~M~~ 409 (854)
T PRK01759 340 EQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALE----------QLQQPLCELPAARERFLRLFNQPNAIKRALVPMHQ 409 (854)
T ss_pred hhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHH----------hccchhccCHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 5799999999986654 6776664211 1122333344444555555543 3467899999
Q ss_pred hcCCCC
Q 036421 266 AGLTAN 271 (422)
Q Consensus 266 ~G~~~~ 271 (422)
+|+-..
T Consensus 410 ~GvL~~ 415 (854)
T PRK01759 410 YGVLTA 415 (854)
T ss_pred hCCHHH
Confidence 887543
No 65
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=31.39 E-value=1.2e+02 Score=28.41 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=40.3
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe-ccChhHHHhhChHHHHHHHHCCCc---eEEEc
Q 036421 339 IKVSNKMDPKELVRLIVILNPKNKPGRITVIV-RMGAENMRVKLPHLIRAVRNAGQI---VTWVS 399 (422)
Q Consensus 339 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~-RmGa~~v~~~LP~LI~AV~~~G~~---ViW~c 399 (422)
|=+|++.+++++++.++..+|+ +..|+ .|.. .+ ..+..+|+++++.|.+ .||+.
T Consensus 116 i~LG~~vp~e~~v~~~~~~~pd-----~v~lS~~~~~-~~-~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 116 IDLGRDVPIDTVVEKVKKEKPL-----MLTGSALMTT-TM-YGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEcccccc-CH-HHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3379999999999999999997 33344 4443 33 3478999999999763 56665
No 66
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=31.17 E-value=52 Score=31.92 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=36.7
Q ss_pred HHHhhhccC---CcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceE
Q 036421 327 VEFLRGVAN---PLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVT 396 (422)
Q Consensus 327 VeflrgI~N---PIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~Vi 396 (422)
.++++.|++ ||.||+.+..+ ++.+++++.|.-...-+ |++.++.....+ =..+|+.++ .+.+||
T Consensus 129 ~eiv~avr~~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~-ihv~~~~~g~~a---d~~~I~~i~-~~ipVI 195 (233)
T cd02911 129 SEFIKALKETGVPVSVKIRAGVD-VDDEELARLIEKAGADI-IHVDAMDPGNHA---DLKKIRDIS-TELFII 195 (233)
T ss_pred HHHHHHHHhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCE-EEECcCCCCCCC---cHHHHHHhc-CCCEEE
Confidence 566666665 99999999987 77777777775443332 444333211011 124555554 455554
No 67
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=31.16 E-value=97 Score=28.17 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceE
Q 036421 342 SNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVT 396 (422)
Q Consensus 342 GP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~Vi 396 (422)
|..++.+++++.++.+.|. .+ -|+=.|-+-..+.|-+|++.+++.|.++.
T Consensus 43 g~~lt~eel~~~I~~~~~~-~~----gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRSL-IS----CVLFLGGEWNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CcCCCHHHHHHHHHHhCCC-CC----EEEEechhcCHHHHHHHHHHHHHCCCCEE
Confidence 6679999999999998754 23 34445777444668899999999998764
No 68
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=30.21 E-value=1.2e+02 Score=32.61 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHhCCCCCCCcEE
Q 036421 344 KMDPKELVRLIVILNPKNKPGRIT 367 (422)
Q Consensus 344 ~~~p~elv~L~~~LnP~~~pGRlT 367 (422)
..+++.+.++++.+|--+.|-|+.
T Consensus 316 ~l~~~~i~~ll~~~d~~r~p~r~~ 339 (417)
T PRK13298 316 YQSSKNIITLFSKIDAWRKPDRIK 339 (417)
T ss_pred cCCHHHHHHHHHHcCcccCHHHHH
Confidence 358899999999999998887754
No 69
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=27.48 E-value=73 Score=29.87 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=24.1
Q ss_pred chhHHHhhhc-cCCcceee--CCCCCHHHHHHHHHH
Q 036421 324 GAHVEFLRGV-ANPLGIKV--SNKMDPKELVRLIVI 356 (422)
Q Consensus 324 gAHVeflrgI-~NPIGvKv--GP~~~p~elv~L~~~ 356 (422)
=.+|+.|+.+ ..|++||+ |+. |.++++++++.
T Consensus 161 ~~~v~~~~~~~~~~v~ik~aGGik-t~~~~l~~~~~ 195 (203)
T cd00959 161 VEDVKLMKEAVGGRVGVKAAGGIR-TLEDALAMIEA 195 (203)
T ss_pred HHHHHHHHHHhCCCceEEEeCCCC-CHHHHHHHHHh
Confidence 3566666555 46999999 466 89999999876
No 70
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=27.32 E-value=2e+02 Score=26.22 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 036421 249 YQELANRVDEAIGFMAAAGLTA 270 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~ 270 (422)
...++.+|-++|.|++..|+..
T Consensus 108 ~~~~~~~i~~~l~~LH~~~i~H 129 (267)
T cd08229 108 VWKYFVQLCSALEHMHSRRVMH 129 (267)
T ss_pred HHHHHHHHHHHHHHHHHCCeec
Confidence 3457889999999999988754
No 71
>PLN02210 UDP-glucosyl transferase
Probab=27.14 E-value=1.1e+02 Score=32.57 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=51.6
Q ss_pred cccCCCchhHHHhhhccCCcceeeCCCCCH----H-H--------------HHHHHHHhCCCCCCCcEEEEeccChhH--
Q 036421 318 RTRQLDGAHVEFLRGVANPLGIKVSNKMDP----K-E--------------LVRLIVILNPKNKPGRITVIVRMGAEN-- 376 (422)
Q Consensus 318 RTRqlDgAHVeflrgI~NPIGvKvGP~~~p----~-e--------------lv~L~~~LnP~~~pGRlTLI~RmGa~~-- 376 (422)
.-.+|++..+++++.. -| -.=|||...+ + + =-+.++-|| ..|.+=++..=||.-.
T Consensus 207 Tf~eLE~~~~~~l~~~-~~-v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld--~~~~~svvyvsfGS~~~~ 282 (456)
T PLN02210 207 SFYELESEIIESMADL-KP-VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLD--KQARSSVVYISFGSMLES 282 (456)
T ss_pred CHHHHhHHHHHHHhhc-CC-EEEEcccCchhhcCcccccccccccccccccchHHHHHHh--CCCCCceEEEEecccccC
Confidence 3458888889888774 23 3668988631 1 0 012455563 3444545556677531
Q ss_pred HHhhChHHHHHHHHCCCceEEEcCC
Q 036421 377 MRVKLPHLIRAVRNAGQIVTWVSDP 401 (422)
Q Consensus 377 v~~~LP~LI~AV~~~G~~ViW~cDP 401 (422)
=.+.+-.+..+.+++|++++|++.|
T Consensus 283 ~~~~~~e~a~~l~~~~~~flw~~~~ 307 (456)
T PLN02210 283 LENQVETIAKALKNRGVPFLWVIRP 307 (456)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 2356778999999999999999875
No 72
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=27.10 E-value=74 Score=33.23 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=45.7
Q ss_pred hhHHHhhhccC--CcceeeCCCCCHHHHHHHHHHhCCCC------CC----CcEEEEeccChhHHHhhChHHHHHHHHCC
Q 036421 325 AHVEFLRGVAN--PLGIKVSNKMDPKELVRLIVILNPKN------KP----GRITVIVRMGAENMRVKLPHLIRAVRNAG 392 (422)
Q Consensus 325 AHVeflrgI~N--PIGvKvGP~~~p~elv~L~~~LnP~~------~p----GRlTLI~RmGa~~v~~~LP~LI~AV~~~G 392 (422)
..|+.+|...+ ||+||.++..+++++.++++...++- +. +.+.+....|--.+ ..||.+.+++.+.|
T Consensus 203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~-~~L~~v~~~~~~~~ 281 (392)
T cd02808 203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTE-LGLARAHQALVKNG 281 (392)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHH-HHHHHHHHHHHHcC
Confidence 46888888887 99999999989999999998876552 11 12222233343233 56777777777654
No 73
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=27.01 E-value=1.3e+02 Score=31.70 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHHH-----------HHHHHHHHhcC
Q 036421 198 IPDPHRMIRAYSQSVA-----------TLNLLRAFATG 224 (422)
Q Consensus 198 ~PDP~Rll~aY~~Saa-----------TLn~lRa~~~g 224 (422)
.-||-|||+++..++. |+++|+.....
T Consensus 129 ~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~~ 166 (409)
T PRK10885 129 AEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVAS 166 (409)
T ss_pred hhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhh
Confidence 5799999999988764 67778876543
No 74
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=26.89 E-value=1.4e+02 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=38.6
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH----hhChHHHHHHHHC-CCceEEE
Q 036421 341 VSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMR----VKLPHLIRAVRNA-GQIVTWV 398 (422)
Q Consensus 341 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~----~~LP~LI~AV~~~-G~~ViW~ 398 (422)
-|-.++.+++.++++.|......+-||| .|-+=.- +.|-.+++.+++. |.+.+|+
T Consensus 42 ~g~~~~~~~~~~i~~~l~~~~~~~gVt~---sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~ 101 (154)
T TIGR02491 42 GGKEFTEALEKEIIRDLNDNPLIDGLTL---SGGDPLYPRNVEELIELVKKIKAEFPEKDIWL 101 (154)
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcCeEEE---eChhhCCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 4777998888888888876643455666 5656554 4577888888876 5666665
No 75
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=26.78 E-value=1.5e+02 Score=31.14 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=44.2
Q ss_pred hccCCcceeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccChhHHHhhChHHHHHHHH--CCCceEEEcCCCCCC
Q 036421 332 GVANPLGIKVSNKMDPKELVRLIVIL--NPKNKPGRITVIVRMGAENMRVKLPHLIRAVRN--AGQIVTWVSDPMHGN 405 (422)
Q Consensus 332 gI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~--~G~~ViW~cDPMHGN 405 (422)
..+||+=+ |...+++.+.+.+++| ||+ .-+=+..|. -|..+.....-.++++.++ .+.|| ++| |-|+
T Consensus 282 ~paNPlDl--gg~a~~e~~~~aL~~ll~Dp~-VdaVlv~i~-ggi~~~~~vA~~Ii~a~~~~~~~kPv-vv~--l~G~ 352 (392)
T PRK14046 282 EPANFLDV--GGGASPERVAKAFRLVLSDRN-VKAILVNIF-AGINRCDWVAEGVVQAAREVGIDVPL-VVR--LAGT 352 (392)
T ss_pred CCcCCEEe--cCCCCHHHHHHHHHHHHcCCC-CCEEEEEcC-CCCCCHHHHHHHHHHHHHhcCCCCcE-EEE--cCCC
Confidence 46899999 6669999999999998 564 444444444 2222223445778888887 66666 666 4563
No 76
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This presumed domain is found at the N terminus of transposase insH and other related transposases.
Probab=26.77 E-value=1.2e+02 Score=23.67 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 036421 249 YQELANRVDEAIGFMAAAGLTAN 271 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~ 271 (422)
.+++++++.+.+.|+..||++.+
T Consensus 25 ~r~l~~~l~~~~~~r~~~g~~~~ 47 (77)
T PF05598_consen 25 DRELEERLRDNLSFRYFCGLSLE 47 (77)
T ss_pred HHHHHhhHhhhhHHHHHHhcccC
Confidence 57899999999999999996443
No 77
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.76 E-value=1.4e+02 Score=26.68 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=40.8
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 036421 339 IKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQ--IVTWVS 399 (422)
Q Consensus 339 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~--~ViW~c 399 (422)
|=+|+..+++|+++.+...||+- |-+=+.++. -...++.+++.+++.|. ..+|++
T Consensus 35 i~LG~~vp~e~i~~~a~~~~~d~----V~lS~~~~~--~~~~~~~~~~~L~~~~~~~~~i~vG 91 (137)
T PRK02261 35 INLGVMTSQEEFIDAAIETDADA----ILVSSLYGH--GEIDCRGLREKCIEAGLGDILLYVG 91 (137)
T ss_pred EECCCCCCHHHHHHHHHHcCCCE----EEEcCcccc--CHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 34699999999999999999872 334446663 33567999999999966 345664
No 78
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=26.76 E-value=1.4e+02 Score=32.04 Aligned_cols=58 Identities=22% Similarity=0.218 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHH-----HHHHHHHHH
Q 036421 198 IPDPHRMIRAYSQSVA--------TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANR-----VDEAIGFMA 264 (422)
Q Consensus 198 ~PDP~Rll~aY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~-----i~~al~Fm~ 264 (422)
.-||-|||+|...|+. |.+.|+..... ..+.+..+-++++..- -..++.+|.
T Consensus 165 ~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~~a~~---------------L~~vs~eRI~~El~Kll~~~~~~~~l~~L~ 229 (410)
T TIGR01942 165 QEDPVRMLRALRFSVKLEFTIDESTARPIRESAPL---------------LKGIPPARLFEEILKLLFSGRSAALFRMLC 229 (410)
T ss_pred cccHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5699999999999986 88888875431 1222232334443332 246778888
Q ss_pred HhcCCC
Q 036421 265 AAGLTA 270 (422)
Q Consensus 265 a~G~~~ 270 (422)
.+|+-.
T Consensus 230 ~~gll~ 235 (410)
T TIGR01942 230 GYQLLE 235 (410)
T ss_pred HcCCHH
Confidence 888854
No 79
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=26.49 E-value=95 Score=35.06 Aligned_cols=91 Identities=25% Similarity=0.386 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCchh
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGAH 326 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAH 326 (422)
-+++.+...+|-.....+|.| .+++-..|--|+=.+=.+++ |.|. |..| +=.|+|-+
T Consensus 546 I~~~i~~f~~aA~~a~~aGfD-------gveih~ahGyLl~qFlsp~~N~RtD~-----yGGs-----lenR~r~~---- 604 (765)
T PRK08255 546 MDRVRDDFVAAARRAAEAGFD-------WLELHCAHGYLLSSFISPLTNQRTDE-----YGGS-----LENRLRYP---- 604 (765)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCCCCCCCCC-----CCCC-----HHHHhHHH----
Confidence 445556666666666667764 46888889888767767765 4443 3222 12466643
Q ss_pred HHHhhhccC------CcceeeCC------CCCHHHHHHHHHHhCCC
Q 036421 327 VEFLRGVAN------PLGIKVSN------KMDPKELVRLIVILNPK 360 (422)
Q Consensus 327 VeflrgI~N------PIGvKvGP------~~~p~elv~L~~~LnP~ 360 (422)
+|-++.|+. ||+||+.+ ..+++|.+++++.|.-.
T Consensus 605 ~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~ 650 (765)
T PRK08255 605 LEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAA 650 (765)
T ss_pred HHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhc
Confidence 445555543 89999997 46789999999999643
No 80
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=26.13 E-value=1e+02 Score=24.55 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=29.2
Q ss_pred CCcEEEEeccC----hhHHHhhChHHHHHHHHCCCceEEEcC--CCCCCcc
Q 036421 363 PGRITVIVRMG----AENMRVKLPHLIRAVRNAGQIVTWVSD--PMHGNTI 407 (422)
Q Consensus 363 pGRlTLI~RmG----a~~v~~~LP~LI~AV~~~G~~ViW~cD--PMHGNT~ 407 (422)
-..+.+|+=.| .+.|+..++..++. ...-..|...++ |++||.-
T Consensus 27 ~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g~~G 76 (83)
T PF01713_consen 27 IRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQYEEVLAYRDAEPEDGNSG 76 (83)
T ss_dssp HSEEEEE--STCTCCTSHHHHHHHHHHHH-THCCTTEEEEEE--CCCTGGG
T ss_pred CCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhccchhheeeecCCCCCCCe
Confidence 37999999999 77776666666655 344445777755 8888863
No 81
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=26.06 E-value=88 Score=32.83 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=27.1
Q ss_pred HHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEE---cCCCCCC
Q 036421 352 RLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWV---SDPMHGN 405 (422)
Q Consensus 352 ~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~---cDPMHGN 405 (422)
.|++.+|.+..--++.++.=.+.+-....+|.+++. -|..|+++ -||+|.|
T Consensus 163 ~l~~~id~~i~~~~lkVvvD~~~G~~~~~~~~ll~~---lG~~v~~i~~~~dg~~~~ 216 (448)
T PRK14315 163 FAKRTLPRDLRLDGLRVVVDCANGAAYKVAPEALWE---LGAEVITIGVEPNGFNIN 216 (448)
T ss_pred HHHHhcccccccCCCEEEEECCCchHHHHHHHHHHH---cCCeEEEeccCCCCCCCC
Confidence 355556532111244555555555556677777754 36667765 3555544
No 82
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=25.33 E-value=27 Score=32.18 Aligned_cols=41 Identities=32% Similarity=0.677 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccc
Q 036421 246 GDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTRE 298 (422)
Q Consensus 246 ~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~ 298 (422)
.+.|..+..+||++|.||.. ||.+... |.-++-|.+.|||.
T Consensus 94 ~~~F~~~L~~LD~cl~Fl~~------h~~fkea------~~Y~~rf~q~ltRA 134 (157)
T PF04136_consen 94 SDSFKPMLSRLDECLEFLEE------HPNFKEA------EVYLIRFRQCLTRA 134 (157)
T ss_pred chHHHHHHHHHHHHHHHHHH------hhhhhhh------HHHHHHHHHHHHHH
Confidence 45689999999999999987 4554444 45567899999885
No 83
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=25.30 E-value=1.4e+02 Score=27.87 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 036421 250 QELANRVDEAIGFMAAAGLTA 270 (422)
Q Consensus 250 ~~~~~~i~~al~Fm~a~G~~~ 270 (422)
..++.+|-.+|.|++..|+..
T Consensus 98 ~~~~~qi~~~l~~lH~~~i~H 118 (279)
T cd06619 98 GRIAVAVVKGLTYLWSLKILH 118 (279)
T ss_pred HHHHHHHHHHHHHHHHCCEee
Confidence 457888999999999999754
No 84
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=25.23 E-value=1.2e+02 Score=32.33 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHH--HHHHHHHHHHHHhc
Q 036421 198 IPDPHRMIRAYSQSVA--------TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELA--NRVDEAIGFMAAAG 267 (422)
Q Consensus 198 ~PDP~Rll~aY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~--~~i~~al~Fm~a~G 267 (422)
.-||-|||+|+..++. |++.|+.... .+..+......+++..+. .....+|++|..+|
T Consensus 167 ~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~~~------------~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~g 234 (466)
T TIGR02692 167 GDDPLRMLRAARFVSQLGFEVAPRVRAAMTEMAD------------QIERISAERVRVELDKLLLGDHPRAGIDLMVETG 234 (466)
T ss_pred hhChHHHHHHHHHHHHhCCCcCHHHHHHHHHHHH------------HHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhh
Confidence 5689999999998764 6666665321 111221111222333322 12245788888888
Q ss_pred CCCC
Q 036421 268 LTAN 271 (422)
Q Consensus 268 ~~~~ 271 (422)
+-..
T Consensus 235 lL~~ 238 (466)
T TIGR02692 235 LADR 238 (466)
T ss_pred hhhh
Confidence 8654
No 85
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=25.22 E-value=43 Score=28.15 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=11.8
Q ss_pred HHHHHHHHHhccCCCccC
Q 036421 75 AELDSVLDTLSSFPPIVF 92 (422)
Q Consensus 75 ~~l~~v~~~L~~lPPLV~ 92 (422)
.+|.++.+.|+.|||++.
T Consensus 59 SQLKRiQRdlrGLPP~~~ 76 (76)
T PF08203_consen 59 SQLKRIQRDLRGLPPLVS 76 (76)
T ss_dssp HHHHHHHHHHHHS-----
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 568999999999999973
No 86
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=25.04 E-value=86 Score=30.39 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=51.6
Q ss_pred hhHHHhhh---ccCCcce--eeCCCCCHHH-HHHHHHHhCCCCCCCcEEEEeccCh----------------hHHHhhCh
Q 036421 325 AHVEFLRG---VANPLGI--KVSNKMDPKE-LVRLIVILNPKNKPGRITVIVRMGA----------------ENMRVKLP 382 (422)
Q Consensus 325 AHVeflrg---I~NPIGv--KvGP~~~p~e-lv~L~~~LnP~~~pGRlTLI~RmGa----------------~~v~~~LP 382 (422)
.||.++-+ |.|+-|+ .+-|.+..++ +.++++.|+= ..+ .+.++.=.+. +++.+.|.
T Consensus 98 ~~i~~~~~g~~v~~~~g~t~~~~~~~~~~~~~~~~~~~l~~-~~~-~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~ 175 (252)
T PF01676_consen 98 GGIADFFGGMDVISVEGATGDVDPDMSAKEIAEAAIEALKK-DKY-DFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLG 175 (252)
T ss_dssp HHHHHHTTTEEEE--STSSCCGSTTTTHHHHHHHHHHHHHH-TTS-SEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHH
T ss_pred ceeHHHhCCcccccccccccccccchhhHHHHHHHHHhhhc-ccC-CeEEEeecCcchhhccCCHHHHHHHHHHHHHHHH
Confidence 45555554 4444454 4456666665 3567777721 111 2555543332 24567899
Q ss_pred HHHHHHHHCCCceEEEcCCCCCCcccCCCCcccc
Q 036421 383 HLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTR 416 (422)
Q Consensus 383 ~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR 416 (422)
.|+++++..+-.++-.+| |||-.+....--||
T Consensus 176 ~l~~~~~~~~~~liiTaD--Hg~~~~~~~~~Ht~ 207 (252)
T PF01676_consen 176 RLLEALDKEDDLLIITAD--HGNDETMGHTSHTR 207 (252)
T ss_dssp HHHHHHHHTTEEEEEEES--SBSTTTSBSSS-B-
T ss_pred HHHHHHhcCCCEEEEECC--CCCccccCCcCCCC
Confidence 999999888887777777 99976654433344
No 87
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=24.85 E-value=74 Score=29.54 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCCCccceeecccccccccc
Q 036421 254 NRVDEAIGFMAAAGLTA------NHPIMTSTEFWTSHECLLLPYE 292 (422)
Q Consensus 254 ~~i~~al~Fm~a~G~~~------~~~~~~~~~~~tSHEaLlL~YE 292 (422)
.+|.+||.||....... ......+..+||.+|.-.|+=|
T Consensus 38 ~eI~~Al~WL~~L~~~~~~~~~~~~~~~~s~Riyt~~E~~~L~~e 82 (155)
T PF04361_consen 38 EEINKALDWLEGLAELQEEEPPAQFASPRSMRIYTPEEQEKLDTE 82 (155)
T ss_pred HHHHHHHHHHHHHHhccccccccccCCCCceEecCHHHHHHCCHH
Confidence 57999999998654322 1222466789999998877654
No 88
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.83 E-value=4.5e+02 Score=27.49 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCC
Q 036421 136 RVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN 188 (422)
Q Consensus 136 ~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 188 (422)
+.++++|..|.. .+.++++ |.+-|||++++ +|+|--..
T Consensus 132 ~~~~~~A~~lk~-~g~~~~r-----~~~~kpRtsp~---------~f~g~~~e 169 (360)
T PRK12595 132 EQVEAVAKALKA-KGLKLLR-----GGAFKPRTSPY---------DFQGLGVE 169 (360)
T ss_pred HHHHHHHHHHHH-cCCcEEE-----ccccCCCCCCc---------cccCCCHH
Confidence 345666666655 5778888 66777999986 47775443
No 89
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.67 E-value=85 Score=31.41 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=29.5
Q ss_pred CeeEEecCCcc-chhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcc
Q 036421 110 NAFLLMGGDCA-ESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPF 171 (422)
Q Consensus 110 ~aFlLQgGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~ 171 (422)
....|-+|=|+ ||- ..++++|..+. ..+.++++ +|-|. ||||++
T Consensus 14 ~~~~~iaGPC~vEs~------------e~~~~~a~~~~-~~g~~~~r----~g~~k-pRts~~ 58 (250)
T PRK13397 14 SKNNFIVGPCSIESY------------DHIRLAASSAK-KLGYNYFR----GGAYK-PRTSAA 58 (250)
T ss_pred CCCcEEeccCccCCH------------HHHHHHHHHHH-HcCCCEEE----ecccC-CCCCCc
Confidence 33455567775 432 23466666644 55889999 88887 999976
No 90
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=24.56 E-value=53 Score=26.55 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=13.6
Q ss_pred CCceEEEcCCCCCCcccCC
Q 036421 392 GQIVTWVSDPMHGNTIKAP 410 (422)
Q Consensus 392 G~~ViW~cDPMHGNT~~t~ 410 (422)
..||+-.| |+|||...++
T Consensus 28 ~~PvtI~C-P~HG~~~~s~ 45 (60)
T PF05265_consen 28 ATPVTIRC-PKHGNFTCST 45 (60)
T ss_pred CCceEEEC-CCCCcEEecc
Confidence 45788777 9999976554
No 91
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.10 E-value=1.4e+02 Score=30.87 Aligned_cols=90 Identities=26% Similarity=0.350 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCch
Q 036421 248 RYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGA 325 (422)
Q Consensus 248 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 325 (422)
+-+++.+...+|-+....+|.| .+++...|--|+=.+=++.| |.|. |-.| +=.|+|-
T Consensus 153 eI~~ii~~f~~AA~rA~~AGfD-------GVEIh~ahGyLl~qFLSp~~N~RtDe-----YGGs-----lENR~Rf---- 211 (362)
T PRK10605 153 EIPGIVNDFRQAIANAREAGFD-------LVELHSAHGYLLHQFLSPSSNQRTDQ-----YGGS-----VENRARL---- 211 (362)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEcccccchHHHhcCCcCCCCCCc-----CCCc-----HHHHHHH----
Confidence 3455666666677778888875 45888999877777767663 4443 4322 2257774
Q ss_pred hHHHhhhccC-----CcceeeCCC---------CCHHH-HHHHHHHhC
Q 036421 326 HVEFLRGVAN-----PLGIKVSNK---------MDPKE-LVRLIVILN 358 (422)
Q Consensus 326 HVeflrgI~N-----PIGvKvGP~---------~~p~e-lv~L~~~Ln 358 (422)
-.|-++.|+. +||||+.|. .+++| .+++|..|.
T Consensus 212 ~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~ 259 (362)
T PRK10605 212 VLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLG 259 (362)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHH
Confidence 3667777665 799999763 68888 688888885
No 92
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=24.04 E-value=1.3e+02 Score=31.99 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=46.5
Q ss_pred CCCchhHHHhhhccCCcceeeCCCCC--------HHHHHHHHHHhCCCCCCCcEEEEeccChhH--HHhhChHHHHHHHH
Q 036421 321 QLDGAHVEFLRGVANPLGIKVSNKMD--------PKELVRLIVILNPKNKPGRITVIVRMGAEN--MRVKLPHLIRAVRN 390 (422)
Q Consensus 321 qlDgAHVeflrgI~NPIGvKvGP~~~--------p~elv~L~~~LnP~~~pGRlTLI~RmGa~~--v~~~LP~LI~AV~~ 390 (422)
.|++.++++++...++--+-|||-.- +++..+.++-||= ..+ +=++..-||... -.+.+-.+..+..+
T Consensus 214 eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~-~~~-~sVvyvsfGS~~~~~~~q~~ela~gLe~ 291 (451)
T PLN02410 214 CLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNK-QKK-NSVIFVSLGSLALMEINEVMETASGLDS 291 (451)
T ss_pred HhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHh-CCC-CcEEEEEccccccCCHHHHHHHHHHHHh
Confidence 45666666665543322244555421 1233334555653 233 445666687532 23556678899999
Q ss_pred CCCceEEEcCC
Q 036421 391 AGQIVTWVSDP 401 (422)
Q Consensus 391 ~G~~ViW~cDP 401 (422)
+|++++|+++|
T Consensus 292 s~~~FlWv~r~ 302 (451)
T PLN02410 292 SNQQFLWVIRP 302 (451)
T ss_pred cCCCeEEEEcc
Confidence 99999999996
No 93
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.97 E-value=71 Score=22.64 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred cceeeCCCC-CHHHHHHHHHH
Q 036421 337 LGIKVSNKM-DPKELVRLIVI 356 (422)
Q Consensus 337 IGvKvGP~~-~p~elv~L~~~ 356 (422)
-||++.++. +-|||++++..
T Consensus 16 ~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 16 HGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred cCCCCCCCCCCHHHHHHHHHH
Confidence 689999999 99999998763
No 94
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=23.81 E-value=1.7e+02 Score=29.79 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=34.1
Q ss_pred CCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCC---CCCcEEEEeccC--hhHHHhhChHHHHHHHHCCCce
Q 036421 321 QLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKN---KPGRITVIVRMG--AENMRVKLPHLIRAVRNAGQIV 395 (422)
Q Consensus 321 qlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~---~pGRlTLI~RmG--a~~v~~~LP~LI~AV~~~G~~V 395 (422)
-+|=..|-.++...=||=+ ||.- .||. .| ..--++..|+|-+|--+.|..=
T Consensus 162 ~~D~~~ip~~k~~~~PVi~------------------DpSHsvq~pg~------~g~~s~G~r~~v~~la~AAvA~GaDG 217 (258)
T TIGR01362 162 VVDMRSLPIMRELGCPVIF------------------DATHSVQQPGG------LGGASGGLREFVPTLARAAVAVGIDG 217 (258)
T ss_pred ccchhhhHHHHhcCCCEEE------------------eCCccccCCCC------CCCCCCCcHHHHHHHHHHHHHhCCCE
Confidence 6777777777776555533 4443 2443 11 1345688899999888888865
Q ss_pred EEE
Q 036421 396 TWV 398 (422)
Q Consensus 396 iW~ 398 (422)
+.+
T Consensus 218 l~i 220 (258)
T TIGR01362 218 LFM 220 (258)
T ss_pred EEE
Confidence 554
No 95
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=23.51 E-value=1.8e+02 Score=30.77 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCcEE
Q 036421 345 MDPKELVRLIVILNPKNKPGRIT 367 (422)
Q Consensus 345 ~~p~elv~L~~~LnP~~~pGRlT 367 (422)
+.|+.+++|++.+|--+.|-|+.
T Consensus 284 l~~~~~~~l~~~~d~~r~p~r~~ 306 (364)
T PRK13297 284 ATPAAQLDLIERCDALRKPERFD 306 (364)
T ss_pred CCHHHHHHHHHHcCcccCHHHHH
Confidence 68999999999999999987753
No 96
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=23.10 E-value=1.2e+02 Score=27.08 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=46.3
Q ss_pred CccchhhhcChhhHHhHHHHHHHHHHHHhhcCCCc----eEEeccccccCCCCCCCcccccCCeecccccCCcC
Q 036421 118 DCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMP----VIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNV 187 (422)
Q Consensus 118 DCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~P----VVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~V 187 (422)
.-...|.+.+++...+-+.+...++..|....+-. ++.+|+.|||.-. -+-=.-+|-|+||.-
T Consensus 44 ~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~-------HlH~HvIPr~~~d~~ 110 (138)
T COG0537 44 RHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVF-------HLHIHIIPRYKGDDN 110 (138)
T ss_pred cchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcc-------eEEEEEcCCcCCCCC
Confidence 44678899999999999999999988887665533 6778999998532 122345788887643
No 97
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=22.94 E-value=1.1e+02 Score=31.92 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=20.9
Q ss_pred cEEEEeccChhHHHhhChHHHHHHHHCCCceEEEc
Q 036421 365 RITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVS 399 (422)
Q Consensus 365 RlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~c 399 (422)
.+.++.=.+.+-....+|.+++ +.|..|+++-
T Consensus 168 ~lkIvvd~~~G~~~~~~~~ll~---~lG~~v~~i~ 199 (441)
T cd05805 168 GLKVVIDYAYGVAGIVLPGLLS---RLGCDVVILN 199 (441)
T ss_pred CCeEEEECCCchHHHHHHHHHH---HcCCEEEEEe
Confidence 4566666666666677777775 4477777763
No 98
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=22.83 E-value=62 Score=33.35 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe
Q 036421 335 NPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIV 370 (422)
Q Consensus 335 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~ 370 (422)
-||.||++| +-+|+.++.+.++=..-.| |++|-
T Consensus 162 ~Pv~vKl~P--~~~di~~iA~~~~~~g~Dg-l~~~N 194 (310)
T COG0167 162 VPVFVKLAP--NITDIDEIAKAAEEAGADG-LIAIN 194 (310)
T ss_pred CceEEEeCC--CHHHHHHHHHHHHHcCCcE-EEEEe
Confidence 899999999 9999999999998655554 45443
No 99
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=22.77 E-value=49 Score=35.99 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=23.9
Q ss_pred cCCCCCCHHHHHHHHHHhc---------cCCCccCHHHHHHHHHH
Q 036421 67 QIPEYPNKAELDSVLDTLS---------SFPPIVFAGESRKLEDR 102 (422)
Q Consensus 67 QqP~ypD~~~l~~v~~~L~---------~lPPLV~~~Ei~~Lr~~ 102 (422)
++=.|.|++.++...+.|. ++||-+|..=++.|++.
T Consensus 88 ~~~d~~~~~~~~~L~~~l~~~~~~lfYLA~PP~~f~~i~~~L~~~ 132 (482)
T PRK12853 88 VQGDVTDPADYARLAEALGPGGNPVFYLAVPPSLFAPVVENLGAA 132 (482)
T ss_pred EecCCCCHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHHhc
Confidence 3346777888877777773 36777777666665553
No 100
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.16 E-value=2.4e+02 Score=26.38 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=40.8
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEe-ccChhHHHhhChHHHHHHHHCCC---ceEEEc
Q 036421 341 VSNKMDPKELVRLIVILNPKNKPGRITVIV-RMGAENMRVKLPHLIRAVRNAGQ---IVTWVS 399 (422)
Q Consensus 341 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~-RmGa~~v~~~LP~LI~AV~~~G~---~ViW~c 399 (422)
+|+.++++++++.+...+|+ +..|+ -|+.. + ..+..+|+++++.+. ..||++
T Consensus 116 lG~~~p~~~l~~~~~~~~~d-----~v~lS~~~~~~-~-~~~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 116 LGRDVPPEEFVEAVKEHKPD-----ILGLSALMTTT-M-GGMKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred CCCCCCHHHHHHHHHHcCCC-----EEEEecccccc-H-HHHHHHHHHHHHCCCCcCCeEEEE
Confidence 79999999999999999997 44444 35543 3 558999999999986 457776
No 101
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=21.95 E-value=1.1e+02 Score=28.54 Aligned_cols=108 Identities=24% Similarity=0.383 Sum_probs=65.9
Q ss_pred ccccCCCCCCHHHHHHHHHHhccCCCccCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHhHHHH--HH
Q 036421 64 KALQIPEYPNKAELDSVLDTLSSFPPIVFAGES--RKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRV--LL 139 (422)
Q Consensus 64 pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei--~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~k~~~--Ll 139 (422)
..-|....+|.. ++...|+...|+|+.+|+ ..+++.|.. +|+ +-|+. -.|.+.|.+++.+ +.
T Consensus 29 ki~~~V~v~~tp---~~~GML~kV~~~V~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~ie 94 (154)
T PRK06049 29 RVNHCVLVPETP---SYKGMLQKVKDYVTWGEIDADTLAELLRK--RGR---LEGNK------KLTDEYVKENTGYDSIE 94 (154)
T ss_pred cCCCEEEEeCCH---HHHHHHHhhhceeEEeeCchHHHHHHHHH--hCc---ccCCC------CCCHHHHHHhcCCccHH
Confidence 334555666664 456667778899999984 456666664 554 43432 4555666665544 55
Q ss_pred HHHHHHhhcC--------CCceEEeccccccCCCCCCCcccccCCeecccccCCcCCC
Q 036421 140 QMSVVLMFGG--------QMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG 189 (422)
Q Consensus 140 qMa~vL~~g~--------~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg 189 (422)
.|+..|..+. =+|+.|+-=--|-|.+ ...++ .+|-.+- ||||.||.
T Consensus 95 dl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~-~k~~~--~~gG~~G-~r~~~In~ 148 (154)
T PRK06049 95 ELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGG-IKRPF--KEGGELG-YRGEKINE 148 (154)
T ss_pred HHHHHHHhCCCCHHHhhcccCceecCCcchhhhh-ccccc--ccCCCCC-ccHHHHHH
Confidence 6666554433 3567777666677843 33444 2455554 99999986
No 102
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=21.90 E-value=1.5e+02 Score=34.07 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHH---HHHHHHHHHHHh
Q 036421 198 IPDPHRMIRAYSQSVA--------TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELAN---RVDEAIGFMAAA 266 (422)
Q Consensus 198 ~PDP~Rll~aY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~---~i~~al~Fm~a~ 266 (422)
.-||.|||+++..++. |++.|+.... .+. ..| .+.....+++.++.. ....+|+.|..|
T Consensus 333 ~eDPlriLR~~rfaa~~~~~i~~~T~~~i~~~~~----~l~--~~~----~~~er~~~ef~~iL~~~~~~~~~l~~m~~~ 402 (850)
T TIGR01693 333 ERDPALLLRLFAIAAQRGLPIHPAALRQLTASLP----LLP--TPL----REDPEARELFLELLTSGNGTVRALRAMNRA 402 (850)
T ss_pred hhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC--chh----hcCHHHHHHHHHHHcCCCchHHHHHHHHHh
Confidence 5799999999988874 7777776432 011 111 122333445555543 246679999999
Q ss_pred cCCC
Q 036421 267 GLTA 270 (422)
Q Consensus 267 G~~~ 270 (422)
|+-.
T Consensus 403 gvL~ 406 (850)
T TIGR01693 403 GVLG 406 (850)
T ss_pred CCHH
Confidence 9854
No 103
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=21.78 E-value=81 Score=34.32 Aligned_cols=53 Identities=26% Similarity=0.467 Sum_probs=29.7
Q ss_pred chhhhcChhhHH-hHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCc
Q 036421 121 ESFKEFNANNIR-DTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDN 186 (422)
Q Consensus 121 EsF~e~~~~~I~-~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~ 186 (422)
|....++++.|| .|+|+|.+|-.+ .-.. .-|| =|||.+-+ ++|..+|.||-+-
T Consensus 249 e~P~~~~a~~ir~eK~kVL~~~r~~-~~~~-~~~v-----rGQY~~g~------~~g~~~~gY~~e~ 302 (482)
T TIGR00871 249 EPPASFDADSIRDEKVKVLKALRPI-DPDD-NNVV-----RGQYGAGE------IGGVSVPGYLEEE 302 (482)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC-Cccc-CceE-----eccccCCC------CCCcCCCCccCCC
Confidence 334445556665 356666554311 1000 2334 49997654 4688999999763
No 104
>cd01636 FIG FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in gluconeogenesis. Inositol-monophosphatases and inositol polyphosphatases play vital roles in eukaryotic signalling, as they participate in metabolizing the messenger molecule Inositol-1,4,5-triphosphate. Many of these enzymes are inhibited by Li+.
Probab=21.68 E-value=49 Score=29.93 Aligned_cols=17 Identities=35% Similarity=0.603 Sum_probs=13.2
Q ss_pred CCceEEEcCCCCCCccc
Q 036421 392 GQIVTWVSDPMHGNTIK 408 (422)
Q Consensus 392 G~~ViW~cDPMHGNT~~ 408 (422)
+-..+|++||+.|.+--
T Consensus 76 ~~~~~WiiDPiDGT~nf 92 (184)
T cd01636 76 RDEYTWVIDPIDGTKNF 92 (184)
T ss_pred CCCeEEEEecccChHHH
Confidence 33579999999997644
No 105
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=20.94 E-value=2.6e+02 Score=24.22 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhCCCCCCCcEEEEe-------ccCh---hHHHhhChHHHHHHHH
Q 036421 344 KMDPKELVRLIVILNPKNKPGRITVIV-------RMGA---ENMRVKLPHLIRAVRN 390 (422)
Q Consensus 344 ~~~p~elv~L~~~LnP~~~pGRlTLI~-------RmGa---~~v~~~LP~LI~AV~~ 390 (422)
.+++.+++++++.+ .+.|.++++|. .||. ..|++.++.+++.|++
T Consensus 74 ~~~l~~~L~~~~~~--~~~p~~~~ivgi~~~~~~~~g~~LS~~v~~av~~~~~~i~~ 128 (134)
T TIGR00140 74 QTGFQEVLALAELL--GHLPKELVLIGVQPEELEDYGGSLSPEVAEAIPPAIEIALA 128 (134)
T ss_pred cCCHHHHHHHHHHc--CCCCCeEEEEEeeEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67889999999976 45676777765 5764 5788888888888765
No 106
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=20.83 E-value=2.3e+02 Score=28.87 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=17.9
Q ss_pred HHHhhChHHHHHHHHCCCceEEE
Q 036421 376 NMRVKLPHLIRAVRNAGQIVTWV 398 (422)
Q Consensus 376 ~v~~~LP~LI~AV~~~G~~ViW~ 398 (422)
--++..|+|-+|--++|..=+.+
T Consensus 206 G~r~~v~~la~AAvA~GadGl~i 228 (264)
T PRK05198 206 GQREFVPVLARAAVAVGVAGLFI 228 (264)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEE
Confidence 45788999999999998865554
No 107
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=20.41 E-value=80 Score=31.39 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=24.6
Q ss_pred cCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 036421 334 ANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMG 373 (422)
Q Consensus 334 ~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG 373 (422)
.-||.||+.|..+ ++.++++.+--...-| ||+|.++.
T Consensus 168 ~~Pv~vKl~~~~~--~~~~~a~~~~~~Gadg-i~~~Nt~~ 204 (299)
T cd02940 168 KIPVIAKLTPNIT--DIREIARAAKEGGADG-VSAINTVN 204 (299)
T ss_pred CCCeEEECCCCch--hHHHHHHHHHHcCCCE-EEEecccc
Confidence 3599999999764 6667777664344443 77766554
No 108
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=20.39 E-value=1.1e+02 Score=24.83 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=39.0
Q ss_pred CCeeEEecCCccchhhhcChhhHHhHHHHHHHHHHHHhhcCCC----ceEEeccccccC
Q 036421 109 GNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQM----PVIKVGRMAGQF 163 (422)
Q Consensus 109 G~aFlLQgGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~----PVVkVGRiAGQf 163 (422)
|...++-=- -.++|.|++++...+-+.++..++..|....+. +++..|..|||-
T Consensus 27 gh~LVipk~-H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~ 84 (98)
T PF01230_consen 27 GHLLVIPKR-HVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS 84 (98)
T ss_dssp TEEEEEESS-TGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred eEEEEEecc-cccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence 444444332 567899999999999999999999888774332 456677888884
No 109
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=20.27 E-value=1.8e+02 Score=30.63 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHH--------HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHHH-----HHHHHHHH
Q 036421 198 IPDPHRMIRAYSQSVA--------TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRV-----DEAIGFMA 264 (422)
Q Consensus 198 ~PDP~Rll~aY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i-----~~al~Fm~ 264 (422)
.-||-|||+|+..++. |+..|+.... ..+..+..+-+.++..-+ ..++..|.
T Consensus 153 ~eDplRiLRa~Rfaa~l~f~i~~~t~~~i~~~~~---------------~l~~vs~eRI~~El~kll~~~~~~~~l~~l~ 217 (394)
T PRK13299 153 QEDALRMMRAVRFASQLGFDLETETFEAMKTQAP---------------LLEKISVERIFVEFEKLLLGPFWRKGLKLLI 217 (394)
T ss_pred ccCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH---------------HHhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5799999999998873 6666765321 122222223344433322 35678888
Q ss_pred HhcCCCC
Q 036421 265 AAGLTAN 271 (422)
Q Consensus 265 a~G~~~~ 271 (422)
.+|+-..
T Consensus 218 ~~gll~~ 224 (394)
T PRK13299 218 ETGLYNY 224 (394)
T ss_pred HCChHHh
Confidence 8887543
No 110
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.26 E-value=2e+02 Score=29.10 Aligned_cols=93 Identities=22% Similarity=0.412 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
-+++.+...+|-+..+.+|.| .+++-..|--|+=.+=.+.+-+ ++.+ |-.| +=.|+|-+ +|
T Consensus 144 I~~~i~~~~~aA~ra~~aGfD-------gVeih~a~gyLl~qFlsp~~N~--R~D~-yGGs-----lenR~rf~----~E 204 (338)
T cd04733 144 IEDVIDRFAHAARLAQEAGFD-------GVQIHAAHGYLLSQFLSPLTNK--RTDE-YGGS-----LENRARLL----LE 204 (338)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEchhhhhHHHHhcCCcCCC--CCcc-CCCC-----HHHHHHHH----HH
Confidence 344555666666677778874 4578888877777777776421 2233 4433 23688753 45
Q ss_pred Hhhhcc------CCcceeeCC------CCCHHHHHHHHHHhCCC
Q 036421 329 FLRGVA------NPLGIKVSN------KMDPKELVRLIVILNPK 360 (422)
Q Consensus 329 flrgI~------NPIGvKvGP------~~~p~elv~L~~~LnP~ 360 (422)
-++.|+ -||+||+.+ ..+++|.+++++.|.-.
T Consensus 205 iI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~ 248 (338)
T cd04733 205 IYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEA 248 (338)
T ss_pred HHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHc
Confidence 555554 289999974 57999999999999643
No 111
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=20.15 E-value=1.4e+02 Score=33.91 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHH--------HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHH---HHHHHHHHHHHhc
Q 036421 199 PDPHRMIRAYSQSVA--------TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELAN---RVDEAIGFMAAAG 267 (422)
Q Consensus 199 PDP~Rll~aY~~Saa--------TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~---~i~~al~Fm~a~G 267 (422)
-||.|||+++..|+. |++.|+.. . .+. ..|.. ...+++.++.. .....|+.|..+|
T Consensus 289 eDPlRiLRafrfAa~~gf~I~~~Tl~~i~~~-~----~L~--~~~~e------r~~~ef~kiL~s~~~~~~~L~~M~~~G 355 (693)
T PRK00227 289 DDPALPLRVAAAAARTGLPVSESVWKRLEEC-P----ELP--EPWPA------SAAGDFFRLLSSPVNSRRVIKQMDRHG 355 (693)
T ss_pred cCHHHHHHHHHHHHhcCCCcCHHHHHHHHhh-h----hcc--hhhHH------HHHHHHHHHHcCCCChHHHHHHHHHcC
Confidence 599999999998776 77777753 1 122 22421 22334444442 2466788999988
Q ss_pred CCC
Q 036421 268 LTA 270 (422)
Q Consensus 268 ~~~ 270 (422)
+=.
T Consensus 356 vL~ 358 (693)
T PRK00227 356 LWE 358 (693)
T ss_pred CHH
Confidence 743
Done!