Query 036421
Match_columns 422
No_of_seqs 144 out of 458
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 21:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzi_A Probable 3-deoxy-D-arab 100.0 6E-176 2E-180 1327.7 25.5 360 57-422 26-388 (462)
2 3tqk_A Phospho-2-dehydro-3-deo 96.9 0.026 8.9E-07 56.7 16.0 99 310-409 154-272 (346)
3 1n8f_A DAHP synthetase; (beta/ 96.7 0.012 4.1E-07 59.2 12.0 96 310-409 157-274 (350)
4 1of8_A Phospho-2-dehydro-3-deo 96.1 0.068 2.3E-06 54.1 13.3 94 312-408 174-287 (370)
5 3nvt_A 3-deoxy-D-arabino-heptu 90.3 0.25 8.4E-06 50.0 4.8 89 310-405 226-322 (385)
6 1zco_A 2-dehydro-3-deoxyphosph 88.5 0.77 2.6E-05 43.8 6.5 91 311-407 108-205 (262)
7 2nwr_A 2-dehydro-3-deoxyphosph 84.6 0.36 1.2E-05 46.5 2.0 88 311-405 96-187 (267)
8 3sz8_A 2-dehydro-3-deoxyphosph 81.6 0.99 3.4E-05 44.1 3.8 89 310-404 111-205 (285)
9 1vs1_A 3-deoxy-7-phosphoheptul 75.6 3.1 0.00011 40.1 5.2 92 311-406 123-219 (276)
10 1o60_A 2-dehydro-3-deoxyphosph 70.8 2.8 9.7E-05 40.7 3.6 89 311-405 110-204 (292)
11 3pzs_A PM kinase, pyridoxamine 68.6 3.4 0.00012 38.6 3.6 66 341-406 53-120 (289)
12 3zs7_A Pyridoxal kinase; trans 64.9 3.3 0.00011 39.4 2.7 65 342-406 53-123 (300)
13 3fs2_A 2-dehydro-3-deoxyphosph 58.6 6.9 0.00024 38.5 3.7 89 310-404 132-224 (298)
14 2qkf_A 3-deoxy-D-manno-octulos 56.7 7.4 0.00025 37.4 3.6 89 311-405 107-201 (280)
15 1vr6_A Phospho-2-dehydro-3-deo 54.9 15 0.00051 36.7 5.5 92 310-406 190-287 (350)
16 2yxt_A Pyridoxal kinase; beta 51.5 14 0.00047 34.4 4.4 61 344-404 56-117 (312)
17 3tml_A 2-dehydro-3-deoxyphosph 50.2 5.4 0.00018 39.0 1.4 90 310-404 108-206 (288)
18 4a5z_A MITD1, MIT domain-conta 49.9 36 0.0012 30.9 6.7 67 349-415 53-125 (163)
19 3hgj_A Chromate reductase; TIM 48.0 20 0.00069 34.9 5.2 101 249-369 147-259 (349)
20 3p0t_A Uncharacterized protein 47.0 99 0.0034 25.7 8.7 97 108-216 39-135 (138)
21 2ymb_A MITD1, MIT domain-conta 46.8 35 0.0012 32.9 6.4 91 303-415 116-213 (257)
22 1jub_A Dihydroorotate dehydrog 42.3 51 0.0017 30.9 6.8 44 327-371 147-194 (311)
23 3oix_A Putative dihydroorotate 41.9 20 0.0007 35.3 4.1 27 335-361 194-220 (345)
24 3kru_A NADH:flavin oxidoreduct 38.8 43 0.0015 32.8 5.9 98 249-369 138-249 (343)
25 3tml_A 2-dehydro-3-deoxyphosph 38.4 28 0.00095 33.9 4.4 55 109-185 15-71 (288)
26 1z41_A YQJM, probable NADH-dep 37.7 60 0.0021 31.3 6.6 99 251-371 141-251 (338)
27 1ccw_A Protein (glutamate muta 35.5 48 0.0016 27.9 5.0 54 340-399 36-91 (137)
28 3gr7_A NADPH dehydrogenase; fl 35.4 30 0.001 33.7 4.2 102 249-370 139-250 (340)
29 2cc0_A Acetyl-xylan esterase; 34.3 65 0.0022 28.1 5.8 55 346-406 135-189 (195)
30 1miw_A TRNA CCA-adding enzyme; 34.2 50 0.0017 33.0 5.6 60 200-271 154-223 (404)
31 3ohe_A Histidine triad (HIT) p 34.1 2.1E+02 0.0073 24.1 9.8 84 119-210 43-128 (137)
32 3l5l_A Xenobiotic reductase A; 34.1 25 0.00087 34.4 3.4 102 249-370 153-267 (363)
33 2yxb_A Coenzyme B12-dependent 34.0 84 0.0029 27.2 6.4 54 340-399 51-106 (161)
34 2e6f_A Dihydroorotate dehydrog 33.8 23 0.00077 33.4 2.9 32 327-358 149-184 (314)
35 4ef8_A Dihydroorotate dehydrog 33.8 17 0.00058 36.1 2.1 25 335-359 194-218 (354)
36 2rf4_B DNA-directed RNA polyme 33.7 18 0.0006 30.0 1.8 23 74-96 61-83 (87)
37 1csn_A Casein kinase-1; phosph 33.0 84 0.0029 27.7 6.3 45 249-295 108-159 (298)
38 2o6l_A UDP-glucuronosyltransfe 32.3 37 0.0012 28.1 3.6 53 346-402 7-61 (170)
39 1vfg_A A-adding enzyme, poly A 27.4 66 0.0023 31.8 5.1 62 199-270 148-219 (390)
40 1f76_A Dihydroorotate dehydrog 25.2 38 0.0013 32.2 2.8 25 334-358 211-235 (336)
41 3l5a_A NADH/flavin oxidoreduct 25.2 52 0.0018 33.2 4.0 104 249-371 165-287 (419)
42 3i3w_A Phosphoglucosamine muta 25.1 1E+02 0.0035 30.9 6.1 11 396-406 174-184 (443)
43 2ddm_A Pyridoxine kinase; pyri 24.4 76 0.0026 28.8 4.6 62 343-404 66-129 (283)
44 3ksv_A Uncharacterized protein 23.7 3.4E+02 0.012 23.1 9.5 92 109-210 46-141 (149)
45 3zwt_A Dihydroorotate dehydrog 23.7 39 0.0013 33.5 2.6 38 334-372 220-257 (367)
46 3kdg_A DNA mismatch repair pro 23.3 59 0.002 29.2 3.5 50 328-378 136-190 (197)
47 3aql_A Poly(A) polymerase; tra 23.0 1.4E+02 0.0049 29.9 6.7 142 200-359 178-355 (415)
48 3rsc_A CALG2; TDP, enediyne, s 22.8 68 0.0023 30.1 4.0 57 359-417 13-72 (415)
49 2gou_A Oxidoreductase, FMN-bin 22.7 1E+02 0.0034 30.3 5.4 124 252-396 159-297 (365)
50 1xrs_B D-lysine 5,6-aminomutas 21.7 1.7E+02 0.0057 28.0 6.5 55 341-399 163-221 (262)
51 3ezx_A MMCP 1, monomethylamine 21.1 2.1E+02 0.007 25.9 6.8 54 339-399 124-183 (215)
52 1y80_A Predicted cobalamin bin 21.0 1.7E+02 0.0059 25.7 6.1 53 341-399 122-177 (210)
53 4e9i_A Glucose-6-phosphate 1-d 21.0 87 0.003 33.2 4.7 59 98-185 295-354 (541)
54 3i24_A HIT family hydrolase; s 20.9 89 0.003 27.1 4.1 61 119-187 43-103 (149)
55 1vcf_A Isopentenyl-diphosphate 20.6 45 0.0016 31.9 2.3 28 327-354 174-202 (332)
56 3fs2_A 2-dehydro-3-deoxyphosph 20.2 1.2E+02 0.004 29.8 5.2 55 110-185 40-95 (298)
No 1
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=100.00 E-value=5.8e-176 Score=1327.70 Aligned_cols=360 Identities=44% Similarity=0.773 Sum_probs=353.5
Q ss_pred CCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHhHHH
Q 036421 57 PDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFR 136 (422)
Q Consensus 57 p~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~k~~ 136 (422)
++|||++|++|||+|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|++|++
T Consensus 26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~ 104 (462)
T 3rzi_A 26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR 104 (462)
T ss_dssp HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 036421 137 VLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLN 216 (422)
Q Consensus 137 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~SaaTLn 216 (422)
+|+|||+||+|++++|||||||||||||||||+++| |++||||||||||+++||+++|+|||+|||+||++|++|||
T Consensus 105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN 181 (462)
T 3rzi_A 105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN 181 (462)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc
Q 036421 217 LLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT 296 (422)
Q Consensus 217 ~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt 296 (422)
+||+|++|||||||++|+||++||++|+.+++|++++++|++||+||++||++.+ .+.+++||||||||||+||+|||
T Consensus 182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt 259 (462)
T 3rzi_A 182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML 259 (462)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999977 67899999999999999999999
Q ss_pred ccc---CCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 036421 297 RED---STSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMG 373 (422)
Q Consensus 297 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG 373 (422)
|.| +.+|.|||||||||||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus 260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG 339 (462)
T 3rzi_A 260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG 339 (462)
T ss_dssp EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence 999 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421 374 AENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422 (422)
Q Consensus 374 a~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il 422 (422)
|+||+++||+||+||+++||+|||+||||||||+++++|||||+|++|+
T Consensus 340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il 388 (462)
T 3rzi_A 340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIV 388 (462)
T ss_dssp TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHH
T ss_pred CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHH
Confidence 9999999999999999999999999999999999999999999999985
No 2
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=96.89 E-value=0.026 Score=56.72 Aligned_cols=99 Identities=25% Similarity=0.321 Sum_probs=76.9
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHH-HhCCCC-----CCCcEE-----------EEecc
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIV-ILNPKN-----KPGRIT-----------VIVRM 372 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~-~LnP~~-----~pGRlT-----------LI~Rm 372 (422)
--+.|||-||-| +--|-|..+|+.-|||.|=|-+.+.++.+.-+. .=+|+. +.|+.. +|-|=
T Consensus 154 vs~~aIGARt~e-nq~hre~asg~s~PVg~Kngt~gti~~ai~Ai~aa~~pH~Fl~~~~~G~~aiv~T~GN~~~HvILRG 232 (346)
T 3tqk_A 154 ITWGAIGARTVE-SQVHRELASGLSASIGFKNATNGDVQVAVDAVKSATYPHHFLSTTKSGSTAIFATKGNQNGHVILRG 232 (346)
T ss_dssp CSEEEECGGGTT-CHHHHHHHTTCSSEEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSCEEEEECCCCSCEEEEECC
T ss_pred hheeeeCccccc-CHHHHHHhcCCCCceEEeCCCCCchHHHhhHHHHHhCCceEEeeCCCCcEEEEECCCCCCEEEEecC
Confidence 448899999998 479999999999999999999999988776655 446774 556655 45576
Q ss_pred Chh---HHHhhChHHHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 373 GAE---NMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 373 Ga~---~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
|.. -=.+.+-...++.+++|.+.-=|.|.=|||..+-
T Consensus 233 g~~gpNY~~~~v~~a~~~l~k~~l~~~imVDcSH~NS~K~ 272 (346)
T 3tqk_A 233 GASGPNFSKEHVDDCIAKLKKADINTKVMIDCSHGNSQKD 272 (346)
T ss_dssp CTTCCCCSHHHHHHHHHHHHHTTCCCCEEEESSHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCeEEEecCccccccc
Confidence 642 1334456677888899999999999999997653
No 3
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=96.70 E-value=0.012 Score=59.17 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=70.3
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh-CCC-----------------CCCCcEEEEec
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVIL-NPK-----------------NKPGRITVIVR 371 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L-nP~-----------------~~pGRlTLI~R 371 (422)
.-++|||-||-+ .-.|.+.++|+.-|||+|=|-..++++.+.-+..- .|+ ..| .+-||-|
T Consensus 157 vd~~qIGAR~~e-sq~hr~~asg~~~PVg~Kngt~g~i~~~l~Ai~aa~~~h~fl~~~~~G~~~~v~t~GN~-~~~lilR 234 (350)
T 1n8f_A 157 MSWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNG-DCHIILR 234 (350)
T ss_dssp CSEEEECTTTTT-CHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCS-CEEEEEC
T ss_pred CcEEEECCcccc-CHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEECCCCC-CEEEEEC
Confidence 449999999876 55899999999999999999999999999884331 222 122 4677888
Q ss_pred cChhHHHhhChH----HHHHHHHCCCceEEEcCCCCCCcccC
Q 036421 372 MGAENMRVKLPH----LIRAVRNAGQIVTWVSDPMHGNTIKA 409 (422)
Q Consensus 372 mGa~~v~~~LP~----LI~AV~~~G~~ViW~cDPMHGNT~~t 409 (422)
-|.. ...+.. +.+..++.|.|.-=++||=|||..+.
T Consensus 235 G~~~--~ny~~~di~~~~~~l~~~~lp~~VivD~SH~ns~k~ 274 (350)
T 1n8f_A 235 GGKE--PNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQ 274 (350)
T ss_dssp CSSS--CCCSHHHHHHHHHHHHHTTCCCCEEEECSGGGTTTC
T ss_pred CCCC--CCCCHHHHHHHHHHHHHcCCCCeEEEECCCcccCcc
Confidence 6642 333333 34456778998444799999996554
No 4
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=96.07 E-value=0.068 Score=54.15 Aligned_cols=94 Identities=22% Similarity=0.245 Sum_probs=69.0
Q ss_pred ceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHH-hCCCC-----CCC-----------cEEEEeccCh
Q 036421 312 MVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVI-LNPKN-----KPG-----------RITVIVRMGA 374 (422)
Q Consensus 312 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pG-----------RlTLI~RmGa 374 (422)
|.|||-||-+= --|.|..+|+.-|||+|=|-..++++.+.-+.. =.|+. ..| .+-||-|-|.
T Consensus 174 w~aIGARt~es-q~hre~Asgl~~PVg~Kngt~g~i~~~~~Ai~aa~~~H~Fl~v~~~G~a~~v~t~GN~~~~lilRG~~ 252 (370)
T 1of8_A 174 FGAIGARTTES-QLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGK 252 (370)
T ss_dssp EEEECTTTTTC-HHHHHHHHTCSSCEEEECCTTSCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCSCEEEEECCCT
T ss_pred hccccCccccc-HHHHHHHhcCCCeEEEcCCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEEcCCCCCEEEEECCCC
Confidence 44999999775 999999999999999999999999999877444 23332 111 4678888774
Q ss_pred ---hHHHhhChHHHHHHHHCCCceEEEcCCCCCCccc
Q 036421 375 ---ENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIK 408 (422)
Q Consensus 375 ---~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~ 408 (422)
.-=+..+.......++.|.+| ++||=|||..+
T Consensus 253 ~~~nY~~~~vd~~~~~l~~~~~pV--ivD~SHans~k 287 (370)
T 1of8_A 253 KGTNYDAKSVAEAKAQLPAGSNGL--MIDYSHGNSNK 287 (370)
T ss_dssp TCCCCSHHHHHHHHHHCCTTCCCE--EEESSGGGGTS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCE--EEeCcccchhh
Confidence 122344555555667778775 59999998765
No 5
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=90.30 E-value=0.25 Score=49.96 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=67.3
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-------cChhHHHhhCh
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR-------MGAENMRVKLP 382 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R-------mGa~~v~~~LP 382 (422)
..+++||-|+=+ +-.+++.+.+..-||.+|=|-..+++|+..-++.+-=... .+|+|.-| ++...+ -|-
T Consensus 226 vd~lkIgs~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~L~~rG~s~yp~~~~~~l--dl~ 301 (385)
T 3nvt_A 226 VDVIQIGARNMQ-NFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGN-GKIILCERGIRTYEKATRNTL--DIS 301 (385)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTC-CCEEEEECCBCCSCCSSSSBC--CTT
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCC-CeEEEEECCCCCCCCCCcccc--CHH
Confidence 458999999854 4689999999999999999999999999999999943322 26999988 233333 233
Q ss_pred HHHHHHHH-CCCceEEEcCCCCCC
Q 036421 383 HLIRAVRN-AGQIVTWVSDPMHGN 405 (422)
Q Consensus 383 ~LI~AV~~-~G~~ViW~cDPMHGN 405 (422)
.+ ..+++ .|.|| ++||=||.
T Consensus 302 ~i-~~lk~~~~lpV--~~D~th~~ 322 (385)
T 3nvt_A 302 AV-PILKKETHLPV--MVDVTHST 322 (385)
T ss_dssp HH-HHHHHHBSSCE--EEEHHHHH
T ss_pred HH-HHHHHhcCCCE--EEcCCCCC
Confidence 33 33444 78887 99999985
No 6
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=88.46 E-value=0.77 Score=43.81 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=65.1
Q ss_pred cceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHH----Hh--hChHH
Q 036421 311 HMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENM----RV--KLPHL 384 (422)
Q Consensus 311 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v----~~--~LP~L 384 (422)
-+++||-|+=+ +-..++.+....-||++|=|-+.+++|++.-++.+.-...+ .+.|+-| |-... .+ .|- -
T Consensus 108 d~~kIga~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~-~i~L~~R-G~~~~~~y~~~~v~L~-a 183 (262)
T 1zco_A 108 DILQIGARNSQ-NFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNE-NVILCER-GIRTFETATRFTLDIS-A 183 (262)
T ss_dssp SEEEECGGGTT-CHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC-CEEEEEC-CBCCSCCSSSSBCCTT-H
T ss_pred CEEEECccccc-CHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCC-eEEEEEC-CCCCCCCcChhhcCHH-H
Confidence 48999999865 55667777778899999999999999999999999543332 7999998 52111 11 122 2
Q ss_pred HHHHHHC-CCceEEEcCCCCCCcc
Q 036421 385 IRAVRNA-GQIVTWVSDPMHGNTI 407 (422)
Q Consensus 385 I~AV~~~-G~~ViW~cDPMHGNT~ 407 (422)
|..+++. |.||+ .||=|+|..
T Consensus 184 i~~lk~~~~~pVi--~d~sH~~g~ 205 (262)
T 1zco_A 184 VPVVKELSHLPII--VDPSHPAGR 205 (262)
T ss_dssp HHHHHHHBSSCEE--ECSSTTTCS
T ss_pred HHHHHhhhCCCEE--EEcCCCCCc
Confidence 3334544 88843 888999875
No 7
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=84.58 E-value=0.36 Score=46.52 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=61.1
Q ss_pred cceeecccc-cCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC---hhHHHhhChHHHH
Q 036421 311 HMVWVGERT-RQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMG---AENMRVKLPHLIR 386 (422)
Q Consensus 311 H~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG---a~~v~~~LP~LI~ 386 (422)
-++|||-|- |+.| .+..+++..-||++|=|-..+++|+..-++++.-...+ .+.||-|=+ .+...--|- -|.
T Consensus 96 d~~~IgA~~~rn~~--ll~~~a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~-~i~L~~rG~~~~y~~~~~dl~-~i~ 171 (267)
T 2nwr_A 96 DIIQIPAFLCRQTD--LLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAK-EIYLTERGTTFGYNNLVVDFR-SLP 171 (267)
T ss_dssp SEEEECGGGTTCHH--HHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCS-SEEEEECCEECSSSCEECCTT-HHH
T ss_pred CEEEECcccccCHH--HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-HHH
Confidence 489999832 2223 67777899999999999999999999999988533323 699999844 221000111 344
Q ss_pred HHHHCCCceEEEcCCCCCC
Q 036421 387 AVRNAGQIVTWVSDPMHGN 405 (422)
Q Consensus 387 AV~~~G~~ViW~cDPMHGN 405 (422)
.+++.| +| ++||=|+|
T Consensus 172 ~lk~~~-pV--ivD~sH~~ 187 (267)
T 2nwr_A 172 IMKQWA-KV--IYDATHSV 187 (267)
T ss_dssp HHTTTS-EE--EEETTGGG
T ss_pred HHHHcC-CE--EEcCCccc
Confidence 556667 55 58999999
No 8
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=81.55 E-value=0.99 Score=44.09 Aligned_cols=89 Identities=24% Similarity=0.344 Sum_probs=61.2
Q ss_pred Ccceeecccc-cCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 036421 310 AHMVWVGERT-RQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR---MGAENMRVKLPHLI 385 (422)
Q Consensus 310 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~LI 385 (422)
.-++|||-|. |+.+ ++..+.+..-||++|=|.+++++|+...++++-=...+ +|+|+-| ||.....--|-. |
T Consensus 111 vd~lqIgA~~~~n~~--LLr~va~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~-~i~L~erg~~y~~~~~~vdl~~-i 186 (285)
T 3sz8_A 111 ADVLQVPAFLARQTD--LVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGND-RVMLCERGSSFGYDNLVVDMLG-F 186 (285)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTSSCEEEECCTTSCGGGTHHHHHHHHHTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCCCCCcCccCHHH-H
Confidence 4489999964 4444 88888999999999999999999999999988322111 5888766 444431111333 2
Q ss_pred HHHHHC--CCceEEEcCCCCC
Q 036421 386 RAVRNA--GQIVTWVSDPMHG 404 (422)
Q Consensus 386 ~AV~~~--G~~ViW~cDPMHG 404 (422)
..+++. |.||+. ||=|.
T Consensus 187 ~~lk~~~~~~pV~~--D~sHs 205 (285)
T 3sz8_A 187 RQMAETTGGCPVIF--DVTHS 205 (285)
T ss_dssp HHHHHHTTSCCEEE--ETTTT
T ss_pred HHHHHhCCCCCEEE--eCCCc
Confidence 334544 788865 89896
No 9
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=75.58 E-value=3.1 Score=40.08 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=67.4
Q ss_pred cceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChh--H-HHhhChH-HHH
Q 036421 311 HMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAE--N-MRVKLPH-LIR 386 (422)
Q Consensus 311 H~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~--~-v~~~LP~-LI~ 386 (422)
-+++||-|+=+ +-.|++.+++..-||++|=|-+++++|+..-++.+--...+ .++|+-|.+.. . =.+.+-- -|.
T Consensus 123 d~~kIgs~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~-~i~L~~Rg~~~yp~y~~~~vdl~~i~ 200 (276)
T 1vs1_A 123 DMLQIGARNMQ-NFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNW-QVVLVERGIRTFEPSTRFTLDVAAVA 200 (276)
T ss_dssp SEEEECGGGTT-CHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCBHHHHH
T ss_pred CeEEECccccc-CHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCC-eEEEEeCCcCCCCCcCcchhCHHHHH
Confidence 48999999876 77899999999999999999999999999999987322222 79999997631 1 1111111 144
Q ss_pred HHHH-CCCceEEEcCCCCCCc
Q 036421 387 AVRN-AGQIVTWVSDPMHGNT 406 (422)
Q Consensus 387 AV~~-~G~~ViW~cDPMHGNT 406 (422)
.+++ .|.+|+ +||=|+|.
T Consensus 201 ~lk~~~~lpVi--~dssH~~g 219 (276)
T 1vs1_A 201 VLKEATHLPVI--VDPSHPAG 219 (276)
T ss_dssp HHHHHBSSCEE--ECCHHHHC
T ss_pred HHHHHhCCCEE--EeCCCCCC
Confidence 5555 488853 78889875
No 10
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=70.76 E-value=2.8 Score=40.70 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=60.4
Q ss_pred cceeecccc-cCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc---ChhHHHhhChHHHH
Q 036421 311 HMVWVGERT-RQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM---GAENMRVKLPHLIR 386 (422)
Q Consensus 311 H~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm---Ga~~v~~~LP~LI~ 386 (422)
-+++||-|- |+.+ .++.+++..-||++|=|-.++++|+..-++++.-...+ .+.|+-|= +...-.--|-.+ .
T Consensus 110 d~~kIgA~~~~n~~--Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~-~i~L~~rg~~~~y~~~~~dl~~i-~ 185 (292)
T 1o60_A 110 DIIQLPAFLARQTD--LVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGND-KIILCDRGTNFGYDNLIVDMLGF-S 185 (292)
T ss_dssp SEEEECGGGTTCHH--HHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTTHH-H
T ss_pred CEEEECcccccCHH--HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHHHH-H
Confidence 388999842 2223 77777888999999999999999999999998533322 79999884 343200122223 2
Q ss_pred HHHHC--CCceEEEcCCCCCC
Q 036421 387 AVRNA--GQIVTWVSDPMHGN 405 (422)
Q Consensus 387 AV~~~--G~~ViW~cDPMHGN 405 (422)
.+++. |.+|+ +||=|+|
T Consensus 186 ~lk~~~~~~pV~--~D~sH~~ 204 (292)
T 1o60_A 186 VMKKASKGSPVI--FDVTHSL 204 (292)
T ss_dssp HHHHHTTSCCEE--EEHHHHC
T ss_pred HHHhhCCCCCEE--EECCCcc
Confidence 45555 67876 4555887
No 11
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=68.61 E-value=3.4 Score=38.64 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=49.8
Q ss_pred eCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 036421 341 VSNKMDPKELVRLIVILNPKN--KPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNT 406 (422)
Q Consensus 341 vGP~~~p~elv~L~~~LnP~~--~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT 406 (422)
.||.++++++.++++.+.=.+ ......++.=+|.....+.+=.+|+..++.|..+.++|||.-|.+
T Consensus 53 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~v~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~ 120 (289)
T 3pzs_A 53 TGCVMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHP 120 (289)
T ss_dssp CEEECCHHHHHHHHHHHHHTTCGGGCCEEEECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEET
T ss_pred ccccCCHHHHHHHHHHHHhcCCccCCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccC
Confidence 367788999999998874221 244566777777777778888888988888888899999975543
No 12
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=64.85 E-value=3.3 Score=39.41 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHCCCc----eEEEcCCCCCCc
Q 036421 342 SNKMDPKELVRLIVILNPKNK--PGRITVIVRMGAENMRVKLPHLIRAVRNAGQI----VTWVSDPMHGNT 406 (422)
Q Consensus 342 GP~~~p~elv~L~~~LnP~~~--pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~----ViW~cDPMHGNT 406 (422)
|+.++.+++..+++-+.+... .-...+|.=+|...+.+.+=.+|+.+++.+-. +.|+|||.=|-+
T Consensus 53 g~~~~~~ql~~~~~~~~~~~~~~~~daV~tG~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~ 123 (300)
T 3zs7_A 53 GHRMSLQEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDD 123 (300)
T ss_dssp EEECCHHHHHHHHHHHHHTTCGGGCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---
T ss_pred CCcCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccC
Confidence 566788999999998887664 33467888888877778788888888765533 889999976654
No 13
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=58.56 E-value=6.9 Score=38.48 Aligned_cols=89 Identities=13% Similarity=0.246 Sum_probs=61.7
Q ss_pred Ccceeecccc-cCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 036421 310 AHMVWVGERT-RQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR---MGAENMRVKLPHLI 385 (422)
Q Consensus 310 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R---mGa~~v~~~LP~LI 385 (422)
.-++|||-|- |+.+ .+..+.+..-||++|=|-+++++|+...++.+-=...+ +|+|+-| +|..+.---|-. |
T Consensus 132 vd~lkIgA~~~~n~~--LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~-~iiL~erg~~y~~~~~~vdl~~-i 207 (298)
T 3fs2_A 132 VDVLQIPAFLCRQTD--LLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITESGNP-NVLATERGVSFGYNTLVSDMRA-L 207 (298)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCCCccCHHH-H
Confidence 4589999964 4333 77788899999999999999999999999988432222 6888766 454441011222 3
Q ss_pred HHHHHCCCceEEEcCCCCC
Q 036421 386 RAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 386 ~AV~~~G~~ViW~cDPMHG 404 (422)
..+++.+.||+. ||=|.
T Consensus 208 ~~lk~~~~PV~~--D~sHs 224 (298)
T 3fs2_A 208 PIMAGLGAPVIF--DATHS 224 (298)
T ss_dssp HHHHTTTSCEEE--EHHHH
T ss_pred HHHHHcCCcEEE--cCCCc
Confidence 334557888876 88784
No 14
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=56.69 E-value=7.4 Score=37.45 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=60.8
Q ss_pred cceeecccc-cCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHh---hChHHHH
Q 036421 311 HMVWVGERT-RQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRV---KLPHLIR 386 (422)
Q Consensus 311 H~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~---~LP~LI~ 386 (422)
-+++||-+- |+.+ .++.+++..-||++|=|-+++++|+..-++++--...+ .+.|+-|=+.-.-.. -|- -|.
T Consensus 107 d~~kIga~~~~n~~--ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~-~i~L~~rg~~~~~~~~~~dl~-~i~ 182 (280)
T 2qkf_A 107 DVIQLPAFLARQTD--LVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNG-KLILCERGSSFGYDNLVVDML-GFG 182 (280)
T ss_dssp SEEEECGGGTTBHH--HHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTT-HHH
T ss_pred CEEEECcccccCHH--HHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-HHH
Confidence 488999842 2223 67777889999999999999999999999998433222 699998865321111 222 344
Q ss_pred HHHHC--CCceEEEcCCCCCC
Q 036421 387 AVRNA--GQIVTWVSDPMHGN 405 (422)
Q Consensus 387 AV~~~--G~~ViW~cDPMHGN 405 (422)
.+++. |.+|+ +||=|+|
T Consensus 183 ~lk~~~~~~pV~--~D~sH~~ 201 (280)
T 2qkf_A 183 VMKQTCGNLPVI--FDVTHSL 201 (280)
T ss_dssp HHHHHTTTCCEE--EEHHHHC
T ss_pred HHHHhCCCCCEE--EECCCCc
Confidence 56665 67776 4555987
No 15
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=54.94 E-value=15 Score=36.71 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=63.2
Q ss_pred CcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC-----hhHHHhhChHH
Q 036421 310 AHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMG-----AENMRVKLPHL 384 (422)
Q Consensus 310 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG-----a~~v~~~LP~L 384 (422)
.-+++||-|+=+ +-..+..+.+..-||++|=|-+++++|+..-++.+--...+ .+.|+-|.+ ...-.-.|- .
T Consensus 190 vd~lkIgAr~~~-n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~-~viLceRG~~typ~~~~~~vdl~-a 266 (350)
T 1vr6_A 190 ADIIQIGARNAQ-NFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNT-KIILCERGIRTFEKATRNTLDIS-A 266 (350)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCCTT-H
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCC-eEEEEeCCCCCCCCcChhhhhHH-H
Confidence 348999999876 56677788889999999999999999999999987322222 688874543 211111122 2
Q ss_pred HHHHHHC-CCceEEEcCCCCCCc
Q 036421 385 IRAVRNA-GQIVTWVSDPMHGNT 406 (422)
Q Consensus 385 I~AV~~~-G~~ViW~cDPMHGNT 406 (422)
|..+++. |.||+ .||=|+|.
T Consensus 267 i~~lk~~~~lpVi--~dssHs~G 287 (350)
T 1vr6_A 267 VPIIRKESHLPIL--VDPSHSGG 287 (350)
T ss_dssp HHHHHHHBSSCEE--ECHHHHHC
T ss_pred HHHHHHhhCCCEE--EeCCCCCc
Confidence 3344444 88853 78889865
No 16
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=51.50 E-value=14 Score=34.40 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHhCCC-CCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 036421 344 KMDPKELVRLIVILNPK-NKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 344 ~~~p~elv~L~~~LnP~-~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHG 404 (422)
..+++++.++++.+... -...++.++.=+......+.+-.+++..++.|.++.+++||--+
T Consensus 56 ~l~~~~i~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~ 117 (312)
T 2yxt_A 56 VLNSDELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLG 117 (312)
T ss_dssp ECCHHHHHHHHHHHHHTTCCCCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCE
T ss_pred cCCHHHHHHHHHHHHhcCCccCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcC
Confidence 67889988887775432 23456755543333344555667888888889888889999744
No 17
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=50.25 E-value=5.4 Score=38.97 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=60.1
Q ss_pred Ccceeecccc-cCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCC-----CCcEEEEec---cChhHHHhh
Q 036421 310 AHMVWVGERT-RQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNK-----PGRITVIVR---MGAENMRVK 380 (422)
Q Consensus 310 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~-----pGRlTLI~R---mGa~~v~~~ 380 (422)
.-++|||-|- |+.+ ++..+.+..-||++|=|.+++++|+..-++.+-=... ..+|+|.-| ||.+++---
T Consensus 108 vd~lkIgA~~~~n~~--LLr~~a~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vd 185 (288)
T 3tml_A 108 VDVLQTPAFLCRQTD--FIHACARSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSD 185 (288)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHTSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECC
T ss_pred CCEEEECcccccCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCC
Confidence 4488999954 3333 6777899999999999999999999999998831111 125888765 454431001
Q ss_pred ChHHHHHHHHCCCceEEEcCCCCC
Q 036421 381 LPHLIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 381 LP~LI~AV~~~G~~ViW~cDPMHG 404 (422)
|-. |..+++.|.|| ++||=|.
T Consensus 186 l~~-i~~lk~~~~pV--~~D~sHs 206 (288)
T 3tml_A 186 MRS-LAIMRETNAPV--VFDATHS 206 (288)
T ss_dssp HHH-HHHGGGGSSCE--EEEHHHH
T ss_pred HHH-HHHHHhcCCcE--EEcCCcc
Confidence 222 22235578888 5688884
No 18
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=49.94 E-value=36 Score=30.89 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCC-CCCCcEEEEeccCh----hHHHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCccc
Q 036421 349 ELVRLIVILNPK-NKPGRITVIVRMGA----ENMRVKLPHLIRAVRNAGQIVTWVSDP-MHGNTIKAPSGLKT 415 (422)
Q Consensus 349 elv~L~~~LnP~-~~pGRlTLI~RmGa----~~v~~~LP~LI~AV~~~G~~ViW~cDP-MHGNT~~t~~G~KT 415 (422)
-++++|+.|=-. ..+-.|.|||..-. ++..+.|-.|=+.....|....|..|. +|---+.+++|.+.
T Consensus 53 NfvrF~Ellvk~~~~~~~I~L~T~~d~~~~~~~Q~~~L~~ik~sL~~~gI~l~~~fs~tiHDR~I~~dnGW~I 125 (163)
T 4a5z_A 53 NFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMI 125 (163)
T ss_dssp HHHHHHHHHHC--CCCCEEEEEECCCCSTTHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCCCEEEETTSEEE
T ss_pred HHHHHHHHHHhcCCCccEEEEEeCCccccCHHHHHHHHHHHHHHHHHCCCEEEEEeCCCccceEEEecCCeEE
Confidence 378888887322 24557999999843 455788999999999999999999986 99999999999764
No 19
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=48.05 E-value=20 Score=34.88 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
-+++.+...+|-+....+|.| .+++-.+|--|+=.+=++.+-. ++.. |..| +-.|.|- -+|
T Consensus 147 I~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~--R~D~-yGGs-----lenR~r~----~~e 207 (349)
T 3hgj_A 147 MERILQAFVEGARRALRAGFQ-------VIELHMAHGYLLSSFLSPLSNQ--RTDA-YGGS-----LENRMRF----PLQ 207 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-------EEEEEECTTSHHHHHHCTTTCC--CCST-TSSS-----HHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEECCccchHHHHhcCCcccc--cCCC-CCcC-----HHHHHHH----HHH
Confidence 344555555555556667764 4688889977776665565422 1222 5544 4467653 345
Q ss_pred Hhhhcc------CCcceeeCC------CCCHHHHHHHHHHhCCCCCCCcEEEE
Q 036421 329 FLRGVA------NPLGIKVSN------KMDPKELVRLIVILNPKNKPGRITVI 369 (422)
Q Consensus 329 flrgI~------NPIGvKvGP------~~~p~elv~L~~~LnP~~~pGRlTLI 369 (422)
-++.|+ -|||||++| ..+.+|.+++++.|.....- =|.+.
T Consensus 208 iv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd-~i~vs 259 (349)
T 3hgj_A 208 VAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVD-LLDCS 259 (349)
T ss_dssp HHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred HHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCC-EEEEe
Confidence 555553 489999999 57899999999999755422 34444
No 20
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=46.97 E-value=99 Score=25.66 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=61.8
Q ss_pred CCCeeEEecCCccchhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcC
Q 036421 108 LGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNV 187 (422)
Q Consensus 108 ~G~aFlLQgGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~V 187 (422)
.|...++== .-.++|.|++++.+.+-++++..++..|....+..-+-+ ++|||=- | -+-=.-+|-|.||-.
T Consensus 39 pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~-~~~gq~v-~------HlH~HiiPr~~~d~~ 109 (138)
T 3p0t_A 39 QGHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-IIAGLEV-P------HLHVHVFPTRSLSDF 109 (138)
T ss_dssp TTCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEE-EECCSSC-S------SCCEEEEEESCGGGS
T ss_pred CcEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EECCccc-C------EEEEEEeccccCCCC
Confidence 355555543 236788999999999999999999888865445444444 3677621 1 122245888998755
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 036421 188 NGDAFDPQSRIPDPHRMIRAYSQSVATLN 216 (422)
Q Consensus 188 Ng~ef~~~aR~PDP~Rll~aY~~SaaTLn 216 (422)
| |.......+|+-|-+.|..=+..|+
T Consensus 110 ~---~~~~~~~~~~~~l~~~~~~l~~~l~ 135 (138)
T 3p0t_A 110 G---FANVDRNPSPESLDEAQAKIKAALA 135 (138)
T ss_dssp S---STTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred c---ccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4 3333677888877776665444443
No 21
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=46.82 E-value=35 Score=32.95 Aligned_cols=91 Identities=15% Similarity=0.317 Sum_probs=67.1
Q ss_pred CCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccCh----hH
Q 036421 303 GLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVIL--NPKNKPGRITVIVRMGA----EN 376 (422)
Q Consensus 303 g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~pGRlTLI~RmGa----~~ 376 (422)
|.|.+-++--+|| +.++|...-.|.| |+++|+.| +|.++. +|.|||..-. ++
T Consensus 116 g~yl~~~~~~i~i-------~DPYir~~hQ~~N--------------l~~f~E~~vk~~~~~~-~i~L~T~~d~~~~~~~ 173 (257)
T 2ymb_A 116 REYLNETVTEVWI-------EDPYIRHTHQLYN--------------FLRFCEMLIKRPCKVK-TIHLLTSLDEGIEQVQ 173 (257)
T ss_dssp STTCSTTCCEEEE-------ECSCCCSHHHHHH--------------HHHHHHHHTC--CCCC-EEEEEECCCSSTTHHH
T ss_pred HHHHhcCCeEEEE-------eCceecchHHHHH--------------HHHHHHHHhhccCccc-eEEEEecCCCcccHHH
Confidence 4444456778888 3445544555555 78888887 566555 8999998753 24
Q ss_pred HHhhChHHHHHHHHCCCceEEEcCC-CCCCcccCCCCccc
Q 036421 377 MRVKLPHLIRAVRNAGQIVTWVSDP-MHGNTIKAPSGLKT 415 (422)
Q Consensus 377 v~~~LP~LI~AV~~~G~~ViW~cDP-MHGNT~~t~~G~KT 415 (422)
-.+.|-.|-+.....|....|..|+ +|---+.+++|.+.
T Consensus 174 q~~~l~~ik~sl~~~gi~~~~~~~~tiHDR~I~~dnGW~I 213 (257)
T 2ymb_A 174 QSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMI 213 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCCCCEEEETTSEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCCccceeEEecCCcEE
Confidence 5567889999999999999999977 89999999999764
No 22
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=42.27 E-value=51 Score=30.86 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHhhhcc----CCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 036421 327 VEFLRGVA----NPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVR 371 (422)
Q Consensus 327 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~R 371 (422)
.|+++.|+ =||.||+.|..+.+++.++++.+.-.... =|+++.|
T Consensus 147 ~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d-~i~v~~~ 194 (311)
T 1jub_A 147 EKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLT-YVNSVNS 194 (311)
T ss_dssp HHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCC-EEEECCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCc-EEEecCC
Confidence 45666554 39999999999999999999998644433 2444433
No 23
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=41.95 E-value=20 Score=35.34 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCCCC
Q 036421 335 NPLGIKVSNKMDPKELVRLIVILNPKN 361 (422)
Q Consensus 335 NPIGvKvGP~~~p~elv~L~~~LnP~~ 361 (422)
=||.||+.|..+.+|+.++++.+.-+.
T Consensus 194 ~PV~vKi~p~~~~~~~a~~~~~aga~~ 220 (345)
T 3oix_A 194 KPLGIKLPPYFDIVHFDQAAAIFNXYP 220 (345)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHHTTSC
T ss_pred CCeEEEECCCCCHHHHHHHHHHhCCCc
Confidence 499999999999999999999987554
No 24
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=38.84 E-value=43 Score=32.82 Aligned_cols=98 Identities=26% Similarity=0.375 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCchh
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGAH 326 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAH 326 (422)
-+++.+...+|-+....+|.| .+++-..|--|+=.+=.+.+ |.| . |..| +-.|.|- -
T Consensus 138 I~~ii~~f~~AA~~a~~aGfD-------gVEih~ahGYLl~qFlsp~~N~R~D----~-yGGs-----lenR~rf----~ 196 (343)
T 3kru_A 138 IKSIVKAFGEAAKRANLAGYD-------VVEIHAAHGYLIHEFLSPLSNKRKD----E-YGNS-----IENRARF----L 196 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTSHHHHHHCTTTCCCCS----T-TSSS-----HHHHTHH----H
T ss_pred HHHHHHHHHHHHhhccccCCc-------eEEEecccchhHHHhhcccccccch----h-hccc-----hHhHHHH----H
Confidence 344555555555556667764 46788888777655666654 433 2 4433 4467763 3
Q ss_pred HHHhhhcc-----C-CcceeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEE
Q 036421 327 VEFLRGVA-----N-PLGIKVSNK------MDPKELVRLIVILNPKNKPGRITVI 369 (422)
Q Consensus 327 VeflrgI~-----N-PIGvKvGP~------~~p~elv~L~~~LnP~~~pGRlTLI 369 (422)
+|-++.|+ + ||+||++|. .+.+|.+++++.|... .-=|++.
T Consensus 197 ~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~--vd~i~vs 249 (343)
T 3kru_A 197 IEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK--VDLIDVS 249 (343)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc--ccEEecc
Confidence 45555554 4 999999994 5789999999999876 5566665
No 25
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=38.39 E-value=28 Score=33.94 Aligned_cols=55 Identities=33% Similarity=0.506 Sum_probs=24.6
Q ss_pred CCeeEEecCCcc-chhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEEeccccccCCC-CCCCcccccCCeecccccCC
Q 036421 109 GNAFLLMGGDCA-ESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAK-PRSDPFEEKNGVKLPSYRGD 185 (422)
Q Consensus 109 G~aFlLQgGDCA-EsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~~~G~~LPsYRGD 185 (422)
++.|++=+|=|+ |+ .+.+.+..+-|...+.-+ +.++| +-+-|-| ||+++. ||||-
T Consensus 15 ~~~~~vIaGPCsie~-----~~~~~e~A~~lk~~~~~~----~~~~v----~k~~f~KapRTs~~---------sf~Gl 71 (288)
T 3tml_A 15 DQPFFLIAGTCVVES-----EQMTIDTAGRLKEICEKL----NVPFI----YKSSYDKANRSSGK---------SFRGL 71 (288)
T ss_dssp TSCCEEEEECSBCCC-----HHHHHHHHHHHHHHHHHH----TCCEE----EECBC-----------------------
T ss_pred CCceEEEEeCCcCCC-----HHHHHHHHHHHHHHHHHc----CCCEE----EecccccCCCCCCC---------CcCCc
Confidence 346888899998 43 455555555554444444 25555 3567888 999987 88886
No 26
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=37.72 E-value=60 Score=31.26 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc--cccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 251 ELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT--REDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 251 ~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
++.+...+|-+....+|.| .+++-.+|--|+-.+=++.| |.| . |..| +-.|.|- -+|
T Consensus 141 ~~i~~~~~aA~~a~~aGfD-------gVeih~~~gyLl~qFlsp~~n~R~d----~-yGGs-----lenr~r~----~~e 199 (338)
T 1z41_A 141 ETVQEFKQAAARAKEAGFD-------VIEIHAAHGYLIHEFLSPLSNHRTD----E-YGGS-----PENRYRF----LRE 199 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCS-------EEEEEECTTSHHHHHHCTTTCCCCS----T-TSSS-----HHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHcCCC-------EEEeccccchHHHHccCCCcCCcCc----c-cCcc-----hhhhHHH----HHH
Confidence 3444444555555566754 45788888777766666765 333 2 4433 2456553 356
Q ss_pred Hhhhc----cCCcceeeCC------CCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 036421 329 FLRGV----ANPLGIKVSN------KMDPKELVRLIVILNPKNKPGRITVIVR 371 (422)
Q Consensus 329 flrgI----~NPIGvKvGP------~~~p~elv~L~~~LnP~~~pGRlTLI~R 371 (422)
-++.| .-||+||++| +.+.+|.+++++.|.... .--|.+..+
T Consensus 200 iv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~G-vd~i~v~~~ 251 (338)
T 1z41_A 200 IIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQG-VDLIDCSSG 251 (338)
T ss_dssp HHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred HHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcC-CCEEEEecC
Confidence 66666 5699999999 588999999999997544 235666555
No 27
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=35.55 E-value=48 Score=27.90 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=41.7
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 036421 340 KVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQ--IVTWVS 399 (422)
Q Consensus 340 KvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~--~ViW~c 399 (422)
-+|+..+++++++.+...||+ =+-|-+-++. .. ..+|.+|+++++.|. ..+|+.
T Consensus 36 ~lG~~~p~e~~v~~a~~~~~d----~v~lS~~~~~-~~-~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 36 NIGVLSPQELFIKAAIETKAD----AILVSSLYGQ-GE-IDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp EEEEEECHHHHHHHHHHHTCS----EEEEEECSST-HH-HHHTTHHHHHHHTTCTTCEEEEE
T ss_pred ECCCCCCHHHHHHHHHhcCCC----EEEEEecCcC-cH-HHHHHHHHHHHhcCCCCCEEEEE
Confidence 379999999999999999987 2344445553 33 568999999999986 566775
No 28
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=35.36 E-value=30 Score=33.67 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
-+++.+...+|-+....+|.| .+++-.+|--|+=.+=.+.+.+ ++.. |..| +..|.|- -+|
T Consensus 139 I~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~--R~D~-yGGs-----lenR~r~----~~e 199 (340)
T 3gr7_A 139 IEETVQAFQNGARRAKEAGFD-------VIEIHAAHGYLINEFLSPLSNR--RQDE-YGGS-----PENRYRF----LGE 199 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTCHHHHHHCTTTCC--CCST-TSSS-----HHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHcCCCccCc--CCCc-ccCC-----HHHHHHH----HHH
Confidence 344555555555556667764 4688889977776665665522 1222 4444 3467653 355
Q ss_pred Hhhhcc----CCcceeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEEe
Q 036421 329 FLRGVA----NPLGIKVSNK------MDPKELVRLIVILNPKNKPGRITVIV 370 (422)
Q Consensus 329 flrgI~----NPIGvKvGP~------~~p~elv~L~~~LnP~~~pGRlTLI~ 370 (422)
-++.|+ -||+||++|. .+.+|.+++++.|..... --|.+..
T Consensus 200 iv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gv-d~i~vs~ 250 (340)
T 3gr7_A 200 VIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGV-DLVDVSS 250 (340)
T ss_dssp HHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTC-CEEEEEC
T ss_pred HHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCC-CEEEEec
Confidence 555554 5999999996 578889999998875542 2566653
No 29
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=34.34 E-value=65 Score=28.14 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCc
Q 036421 346 DPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNT 406 (422)
Q Consensus 346 ~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT 406 (422)
+++++++.+.. ..+|-|.|..=.. ..-.+.||.+|+..++.|+.++-+.+=+ |+.
T Consensus 135 ~~~~i~~~~~~----~~~g~IiL~Hd~~-~~t~~al~~ii~~l~~~Gy~~v~l~~~~-~~~ 189 (195)
T 2cc0_A 135 STDAIVQAVSR----LGNGQVILMHDWP-ANTLAAIPRIAQTLAGKGLCSGMISPQT-GRA 189 (195)
T ss_dssp CHHHHHHHHHT----CCTTCEEEEESSC-HHHHHHHHHHHHHHHHTTEEECEECTTT-SSE
T ss_pred CHHHHHHHHhC----cCcCeEEEECCCc-hhHHHHHHHHHHHHHHCCCEEEEeCccc-CCC
Confidence 57777776643 4578888887444 4455789999999999999999776544 544
No 30
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=34.24 E-value=50 Score=33.04 Aligned_cols=60 Identities=23% Similarity=0.191 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHH--------HHHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHH--HHHHHHHHHHHhcCC
Q 036421 200 DPHRMIRAYSQSV--------ATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELAN--RVDEAIGFMAAAGLT 269 (422)
Q Consensus 200 DP~Rll~aY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~--~i~~al~Fm~a~G~~ 269 (422)
||-|||+|+..++ .|++.|+.... . +..+.......++..+.. ....+|+.|..+|+-
T Consensus 154 DPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~-~-----------l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll 221 (404)
T 1miw_A 154 DALRMMRAVRFVSELGFALAPDTEQAIVQNAP-L-----------LAHISVERMTMEMEKLLGGPFAARALPLLAETGLN 221 (404)
T ss_dssp CTHHHHHHHHHHHHHCCEECHHHHHHHHHHGG-G-----------GGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTT
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-h-----------hccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcch
Confidence 9999999999887 57888876431 1 111222222233333332 245678999999986
Q ss_pred CC
Q 036421 270 AN 271 (422)
Q Consensus 270 ~~ 271 (422)
..
T Consensus 222 ~~ 223 (404)
T 1miw_A 222 AY 223 (404)
T ss_dssp TS
T ss_pred hh
Confidence 54
No 31
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=34.10 E-value=2.1e+02 Score=24.11 Aligned_cols=84 Identities=10% Similarity=-0.000 Sum_probs=58.0
Q ss_pred ccchhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCC-CCCC-CCC
Q 036421 119 CAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG-DAFD-PQS 196 (422)
Q Consensus 119 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg-~ef~-~~a 196 (422)
-.+++.|++++...+-+..+..++..|....+..-+.+| .|||-- --+-=.-+|-|.||.... +-+. ...
T Consensus 43 h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-------~HlH~HviPR~~~D~~~p~~vw~~~~~ 114 (137)
T 3ohe_A 43 GIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-------PQLHLHHIVRYQGDPAWPGPVWGKQPP 114 (137)
T ss_dssp TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTTTTSCCTTSSCC
T ss_pred ccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-------CEEEEEEeCCCCCCCCCCcccccCCCC
Confidence 367888999999888899999999988877777779999 888841 122345689999997642 2222 244
Q ss_pred CCCChHHHHHHHHH
Q 036421 197 RIPDPHRMIRAYSQ 210 (422)
Q Consensus 197 R~PDP~Rll~aY~~ 210 (422)
+..+++-|-+-+..
T Consensus 115 ~~~~~eel~~~~~~ 128 (137)
T 3ohe_A 115 VPYTEEQQASVKAK 128 (137)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 55677655444333
No 32
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=34.08 E-value=25 Score=34.43 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
-+++.+...+|-+....+|.| .+++-..|--|+-.+=++.|-. ++.. |..| +-.|.|- -+|
T Consensus 153 I~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~--R~D~-yGGs-----lenR~r~----~~e 213 (363)
T 3l5l_A 153 IARVKQDFVDAARRARDAGFE-------WIELHFAHGYLGQSFFSEHSNK--RTDA-YGGS-----FDNRSRF----LLE 213 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTSHHHHHHCTTTCC--CCST-TSSS-----HHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHccCCCcCC--CCcc-cCcC-----HHHHHHH----HHH
Confidence 344555555555556667764 4688888987876676776521 2223 5444 2456653 345
Q ss_pred Hhhhcc------CCcceeeCCC-------CCHHHHHHHHHHhCCCCCCCcEEEEe
Q 036421 329 FLRGVA------NPLGIKVSNK-------MDPKELVRLIVILNPKNKPGRITVIV 370 (422)
Q Consensus 329 flrgI~------NPIGvKvGP~-------~~p~elv~L~~~LnP~~~pGRlTLI~ 370 (422)
-++.|+ -|||||++|. .+.+|.+++++.|.....- =|.+..
T Consensus 214 iv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd-~i~vs~ 267 (363)
T 3l5l_A 214 TLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLD-LLSVSV 267 (363)
T ss_dssp HHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred HHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCC-EEEEec
Confidence 555554 2899999985 6789999999999765422 455544
No 33
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=34.02 E-value=84 Score=27.21 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=41.8
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC--ceEEEc
Q 036421 340 KVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQ--IVTWVS 399 (422)
Q Consensus 340 KvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~--~ViW~c 399 (422)
=.|...+++++++.+...+|+ =|-|-+.++. . .+.++.+|+++++.|. ..||+.
T Consensus 51 ~lG~~~p~e~lv~aa~~~~~d----iV~lS~~~~~-~-~~~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 51 YTGLRQTPEQVAMAAVQEDVD----VIGVSILNGA-H-LHLMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp CCCSBCCHHHHHHHHHHTTCS----EEEEEESSSC-H-HHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred ECCCCCCHHHHHHHHHhcCCC----EEEEEeechh-h-HHHHHHHHHHHHhcCCCCCEEEEe
Confidence 358899999999999999987 2344455553 3 3678999999999984 567776
No 34
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=33.84 E-value=23 Score=33.36 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=25.9
Q ss_pred HHHhhhcc----CCcceeeCCCCCHHHHHHHHHHhC
Q 036421 327 VEFLRGVA----NPLGIKVSNKMDPKELVRLIVILN 358 (422)
Q Consensus 327 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~Ln 358 (422)
.|.++.|+ -||.||++|..+.+++.++++.+.
T Consensus 149 ~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~ 184 (314)
T 2e6f_A 149 RTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLN 184 (314)
T ss_dssp HHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45555553 499999999999999999988875
No 35
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=33.84 E-value=17 Score=36.09 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCcceeeCCCCCHHHHHHHHHHhCC
Q 036421 335 NPLGIKVSNKMDPKELVRLIVILNP 359 (422)
Q Consensus 335 NPIGvKvGP~~~p~elv~L~~~LnP 359 (422)
-||.||+.|..+.+++.++++.++-
T Consensus 194 ~PV~vKi~p~~d~~~~~~~a~~~~~ 218 (354)
T 4ef8_A 194 HSFGVKMPPYFDFAHFDAAAEILNE 218 (354)
T ss_dssp SCEEEEECCCCSHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHh
Confidence 4999999999999999999998863
No 36
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=33.66 E-value=18 Score=30.02 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhccCCCccCHHHH
Q 036421 74 KAELDSVLDTLSSFPPIVFAGES 96 (422)
Q Consensus 74 ~~~l~~v~~~L~~lPPLV~~~Ei 96 (422)
-.+|.+|.+.|+.|||++...|.
T Consensus 61 LsQLKRvQRdlrGLPP~~~e~~~ 83 (87)
T 2rf4_B 61 ISQLKRIQRDFKGLPPAQDFSAA 83 (87)
T ss_dssp HHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHhhcCCCcchhcccC
Confidence 46799999999999999987653
No 37
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=32.95 E-value=84 Score=27.69 Aligned_cols=45 Identities=7% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeeccc-------cccccccccc
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHE-------CLLLPYEQAL 295 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHE-------aLlL~YE~al 295 (422)
-..++.+|-++|.||+..|+-.. .+....|+.+.+ .-+.||..+-
T Consensus 108 ~~~i~~qi~~~l~~lH~~~ivH~--Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 108 VAMAAKQMLARVQSIHEKSLVYR--DIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp HHHHHHHHHHHHHHHHTTTEECC--CCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHhCCEecC--CCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 45688899999999999987643 455567777654 5577777663
No 38
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=32.30 E-value=37 Score=28.09 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEE--eccChhHHHhhChHHHHHHHHCCCceEEEcCCC
Q 036421 346 DPKELVRLIVILNPKNKPGRITVI--VRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPM 402 (422)
Q Consensus 346 ~p~elv~L~~~LnP~~~pGRlTLI--~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPM 402 (422)
-|+|+.+.++.- .+.++.+| .++|+..-.+.+..++++.++.+..++|+|++.
T Consensus 7 l~~~~~~~l~~~----~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~ 61 (170)
T 2o6l_A 7 LPKEMEDFVQSS----GENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN 61 (170)
T ss_dssp CCHHHHHHHHTT----TTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS
T ss_pred CCHHHHHHHHcC----CCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 456777765421 12233333 344433345678899999998899999999854
No 39
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=27.40 E-value=66 Score=31.76 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHH--------HHHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHH--HHHHHHHHHHHhcC
Q 036421 199 PDPHRMIRAYSQSV--------ATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELAN--RVDEAIGFMAAAGL 268 (422)
Q Consensus 199 PDP~Rll~aY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~--~i~~al~Fm~a~G~ 268 (422)
-||-|||+++..++ .|++.|+.....+.- +.+.......++..+.. ....+|+.|..+|+
T Consensus 148 eDPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l----------~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~gl 217 (390)
T 1vfg_A 148 EDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLL----------KEAPRGRLINEIKLALREDRFLEILELYRKYRV 217 (390)
T ss_dssp HCTTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGG----------GTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTC
T ss_pred hCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhh----------hccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 39999999999887 478888875433211 11111222233444333 24567889999997
Q ss_pred CC
Q 036421 269 TA 270 (422)
Q Consensus 269 ~~ 270 (422)
-.
T Consensus 218 L~ 219 (390)
T 1vfg_A 218 LE 219 (390)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 40
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=25.20 E-value=38 Score=32.24 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.9
Q ss_pred cCCcceeeCCCCCHHHHHHHHHHhC
Q 036421 334 ANPLGIKVSNKMDPKELVRLIVILN 358 (422)
Q Consensus 334 ~NPIGvKvGP~~~p~elv~L~~~Ln 358 (422)
.=||.||+.|..+.+|++++++.|-
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~ 235 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLV 235 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHH
T ss_pred cCceEEEecCCCCHHHHHHHHHHHH
Confidence 3599999999999999988888875
No 41
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=25.20 E-value=52 Score=33.17 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHH
Q 036421 249 YQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVE 328 (422)
Q Consensus 249 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVe 328 (422)
-+++++...+|-+....+|.| .+++-..|--|+=.+=++.|-+ ++.. |..|- +-.|.|- -+|
T Consensus 165 I~~ii~~F~~AA~rA~~AGfD-------gVEIH~ahGYLl~QFlSp~~N~--RtD~-yGGs~----lenR~Rf----~~e 226 (419)
T 3l5a_A 165 INSIIQQYRDATLRAIKAGFD-------GVEISIAQRLLIQTFFSTFSNR--RTDH-YGADS----LKNRARL----CLE 226 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-------EEEEECCTTSHHHHHHCTTTCC--CCST-TSTTC----HHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEECCccchHHHHccCCcccc--cccC-CCCch----hhhhhHH----HHH
Confidence 444555555666666677764 5688888877776666666521 2222 44442 1256553 244
Q ss_pred HhhhccC----------CcceeeCC--------CCCHHHHHHHHHHhCC-CCCCCcEEEEec
Q 036421 329 FLRGVAN----------PLGIKVSN--------KMDPKELVRLIVILNP-KNKPGRITVIVR 371 (422)
Q Consensus 329 flrgI~N----------PIGvKvGP--------~~~p~elv~L~~~LnP-~~~pGRlTLI~R 371 (422)
-++.|+. |||||++| +.+.+|.+++++.|.- ... -=|.+..+
T Consensus 227 vv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gv-d~I~vs~g 287 (419)
T 3l5a_A 227 VMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNI-QYLAIASW 287 (419)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCC-CCEEECCT
T ss_pred HHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCC-cEEEEeeC
Confidence 4544443 89999999 6789999999999975 332 24555544
No 42
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=25.05 E-value=1e+02 Score=30.91 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.0
Q ss_pred EEEcCCCCCCc
Q 036421 396 TWVSDPMHGNT 406 (422)
Q Consensus 396 iW~cDPMHGNT 406 (422)
--+.|||||-+
T Consensus 174 kivvD~~nG~~ 184 (443)
T 3i3w_A 174 KVVVDCAHGAA 184 (443)
T ss_dssp EEEEECTTSTT
T ss_pred eEEEECCCChH
Confidence 34456666654
No 43
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=24.44 E-value=76 Score=28.82 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHhCCC--CCCCcEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCC
Q 036421 343 NKMDPKELVRLIVILNPK--NKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHG 404 (422)
Q Consensus 343 P~~~p~elv~L~~~LnP~--~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHG 404 (422)
+..+++++.++++.|.-+ -...++.+|.=++.....+.+-.+++..++.++.+.+++||--+
T Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~ 129 (283)
T 2ddm_A 66 GAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIG 129 (283)
T ss_dssp EECCHHHHHHHHHHHHHTTCCTTCCEEEECCCSCHHHHHHHHHHHHHHHTTCTTCEEEECCCCE
T ss_pred eeCCHHHHHHHHHHHHhcCCcccCCEEEECCcCCHHHHHHHHHHHHHHHhcCCCCeEEECCccc
Confidence 456678877777766432 12347777766665555555666666666633345567799643
No 44
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=23.71 E-value=3.4e+02 Score=23.06 Aligned_cols=92 Identities=13% Similarity=0.075 Sum_probs=57.5
Q ss_pred CCeeEEecCCccchhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEEe----ccccccCCCCCCCcccccCCeecccccC
Q 036421 109 GNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKV----GRMAGQFAKPRSDPFEEKNGVKLPSYRG 184 (422)
Q Consensus 109 G~aFlLQgGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkV----GRiAGQfAKPRS~~~E~~~G~~LPsYRG 184 (422)
|...++==- -.++|.|++++.+.+-++++..++..|....+..-+.| |..|||-= --+-=.-+|-|+|
T Consensus 46 gH~LViPk~-H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~v-------~HlHiHiiPR~~~ 117 (149)
T 3ksv_A 46 GHMLVIPKE-HASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEV-------PHVHFHIIPKTDE 117 (149)
T ss_dssp TCEEEEESS-CCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCCS-------SSCCEEEEEECCT
T ss_pred CEEEEEeCh-hhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccCCCC-------CEEEEEEEecccC
Confidence 555555433 35789999999999999999999998876655454555 56777621 1112245788888
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHHH
Q 036421 185 DNVNGDAFDPQSRIPDPHRMIRAYSQ 210 (422)
Q Consensus 185 D~VNg~ef~~~aR~PDP~Rll~aY~~ 210 (422)
|- |..+.-.....+|+-|-+-+..
T Consensus 118 d~--g~~~~w~~~~~~~~~l~~~~~~ 141 (149)
T 3ksv_A 118 KT--GLKIGWDTVKVASDELAEDAKR 141 (149)
T ss_dssp TS--SCCCCCCCCCCCHHHHHHHHHH
T ss_pred CC--CcccCCCCCCCCHHHHHHHHHH
Confidence 73 3334333455677655444443
No 45
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=23.69 E-value=39 Score=33.51 Aligned_cols=38 Identities=5% Similarity=0.108 Sum_probs=28.7
Q ss_pred cCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 036421 334 ANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM 372 (422)
Q Consensus 334 ~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm 372 (422)
.=||.||+.|..+.+++.++++.+.-.... =|+++.|.
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGad-gi~v~ntt 257 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGID-GLIVTNTT 257 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCC-EEEECCCB
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 359999999999999999999988533333 36666554
No 46
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=23.27 E-value=59 Score=29.17 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHhhhccCCcceeeCCCCCHHHHHHHHHHh----CCCCCC-CcEEEEeccChhHHH
Q 036421 328 EFLRGVANPLGIKVSNKMDPKELVRLIVIL----NPKNKP-GRITVIVRMGAENMR 378 (422)
Q Consensus 328 eflrgI~NPIGvKvGP~~~p~elv~L~~~L----nP~~~p-GRlTLI~RmGa~~v~ 378 (422)
+.+...+---+||.|-..+.+|..+|++.| ||.+-| ||=|+|. +..+.++
T Consensus 136 ~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~-l~~~ele 190 (197)
T 3kdg_A 136 EAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIH-HSTYEME 190 (197)
T ss_dssp HHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEE-EEHHHHH
T ss_pred HHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEE-eCHHHHH
Confidence 356666767799999999999999999998 665544 7877653 4444443
No 47
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=22.97 E-value=1.4e+02 Score=29.92 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHH--------HHHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHH--HHHHHHHHHHHhcCC
Q 036421 200 DPHRMIRAYSQSV--------ATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELAN--RVDEAIGFMAAAGLT 269 (422)
Q Consensus 200 DP~Rll~aY~~Sa--------aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~--~i~~al~Fm~a~G~~ 269 (422)
||-|||+|+..++ .|+..|+.... .++-+......+++..+.. ....+|+.|..+|+-
T Consensus 178 DPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~------------~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL 245 (415)
T 3aql_A 178 DPVRMLRAVRFAAKLGMRISPETAEPIPRLAT------------LLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF 245 (415)
T ss_dssp CTHHHHHHHHHHHHTTCEECHHHHTHHHHHGG------------GGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH------------hhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCCh
Confidence 8999999999886 57777776421 1111211122223333321 235789999999986
Q ss_pred CC-CCC----CCccceeecccccccccccccc-------cccCCCCCccccCCccee--ecccccC------CC--chhH
Q 036421 270 AN-HPI----MTSTEFWTSHECLLLPYEQALT-------REDSTSGLYYDCSAHMVW--VGERTRQ------LD--GAHV 327 (422)
Q Consensus 270 ~~-~~~----~~~~~~~tSHEaLlL~YE~alt-------R~d~~~g~~Y~~SaH~lW--IGeRTRq------lD--gAHV 327 (422)
.. -|. ...... .|- .- -+|.+|. ...+.+..+| =|=++| ||++++. .. ++|.
T Consensus 246 ~~~lPe~~~i~~~~q~--~h~-~~-v~~h~L~~~d~~i~~~~~~~~~L~--lAALLH~di~K~~~~~~~~~G~~~~~~h~ 319 (415)
T 3aql_A 246 QPLFPTITRYFTENGD--SPM-ER-IIEQVLKNTDTRIHNDMRVNPAFL--FAAMFWYPLLETAQKIAQESGLTYHDAFA 319 (415)
T ss_dssp TTTCHHHHTTCCSSSC--CHH-HH-HHHHHHHHHHHHHHTTCCCCHHHH--HHHHTHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHhchhHHHHhccCCc--chH-HH-HHHHHHHHHHHHHhcCCCCCHHHH--HhHhcCcchhhhhhhhhhccCCCchHHHH
Confidence 54 111 111111 120 00 0122221 1111111112 234677 8887542 12 4775
Q ss_pred H----HhhhccCCcceeeCCCCCHHHHHHHHHHhCC
Q 036421 328 E----FLRGVANPLGIKVSNKMDPKELVRLIVILNP 359 (422)
Q Consensus 328 e----flrgI~NPIGvKvGP~~~p~elv~L~~~LnP 359 (422)
+ .++.+..-+|+--=.+....+++.+..+|.-
T Consensus 320 ~~ga~~a~~~~~rl~l~~r~~~~v~~lv~lq~rL~~ 355 (415)
T 3aql_A 320 LAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSR 355 (415)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Confidence 4 4444555555544455666778888877763
No 48
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=22.83 E-value=68 Score=30.05 Aligned_cols=57 Identities=9% Similarity=0.159 Sum_probs=36.3
Q ss_pred CCCCCC---cEEEEeccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCccccc
Q 036421 359 PKNKPG---RITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRS 417 (422)
Q Consensus 359 P~~~pG---RlTLI~RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~ 417 (422)
+.++.. ||-+++=.|.+.+.-.+ +|.++.++.||.|+++|.|-+...+. ..|+....
T Consensus 13 ~~~~~~~m~rIl~~~~~~~GHv~p~l-~La~~L~~~Gh~V~v~~~~~~~~~~~-~~G~~~~~ 72 (415)
T 3rsc_A 13 GHIEGRHMAHLLIVNVASHGLILPTL-TVVTELVRRGHRVSYVTAGGFAEPVR-AAGATVVP 72 (415)
T ss_dssp ------CCCEEEEECCSCHHHHGGGH-HHHHHHHHTTCEEEEEECGGGHHHHH-HTTCEEEE
T ss_pred CCcCcccCCEEEEEeCCCccccccHH-HHHHHHHHCCCEEEEEeCHHHHHHHH-hcCCEEEe
Confidence 444444 78888878888886655 69999999999999999654332222 23554443
No 49
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=22.73 E-value=1e+02 Score=30.28 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccccccCCCCCccccCCcceeecccccCCCchhHHHhh
Q 036421 252 LANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLR 331 (422)
Q Consensus 252 ~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflr 331 (422)
+.+...+|-+....+|.| .+++-..|--|+-.+=.+.|-. ++.. |..| +-.|.|- -+|-++
T Consensus 159 ~i~~f~~aA~~a~~aGfD-------gVeih~a~gYLl~qFlsp~~N~--R~D~-yGGs-----lenr~r~----~~eiv~ 219 (365)
T 2gou_A 159 VIADYRQAALNAMEAGFD-------GIELHAANGYLINQFIDSEANN--RSDE-YGGS-----LENRLRF----LDEVVA 219 (365)
T ss_dssp HHHHHHHHHHHHHHTTCS-------EEEEECCTTSHHHHHHSGGGCC--CCST-TSSS-----HHHHTHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-------EEEEecccchhHhhccCCCccC--cCcc-cCcc-----hhhhHHH----HHHHHH
Confidence 444444444445556753 4678888876665555665421 1222 4433 2356553 234444
Q ss_pred hcc-----CCcceeeCCCC---------CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHC-CCceE
Q 036421 332 GVA-----NPLGIKVSNKM---------DPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNA-GQIVT 396 (422)
Q Consensus 332 gI~-----NPIGvKvGP~~---------~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~-G~~Vi 396 (422)
.|+ +|||||+.|.- +.++.+++++.|..... -=|++..|.-... ...-..+++.|++. +.+|+
T Consensus 220 avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~-d~i~v~~~~~~~~-~~~~~~~~~~i~~~~~iPvi 297 (365)
T 2gou_A 220 ALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRI-VYLHIAEVDWDDA-PDTPVSFKRALREAYQGVLI 297 (365)
T ss_dssp HHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTC-SEEEEECCBTTBC-CCCCHHHHHHHHHHCCSEEE
T ss_pred HHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCC-CEEEEeCCCcCCC-CCccHHHHHHHHHHCCCcEE
Confidence 442 39999999952 67888999999875543 3466665521000 00011566667654 44554
No 50
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=21.68 E-value=1.7e+02 Score=28.02 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=40.8
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhH-HHhhChHHHHHHHHCCCc---eEEEc
Q 036421 341 VSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAEN-MRVKLPHLIRAVRNAGQI---VTWVS 399 (422)
Q Consensus 341 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~-v~~~LP~LI~AV~~~G~~---ViW~c 399 (422)
+|+..+++++++.+...||+ =|-+-+-|+.+. -.+.++.+|+++++.|.. .+|+.
T Consensus 163 LG~~vp~e~iv~aa~e~~~d----~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivG 221 (262)
T 1xrs_B 163 LGSQVANEDFIKKAVELEAD----VLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCG 221 (262)
T ss_dssp CCSSBCHHHHHHHHHHTTCS----EEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEE
T ss_pred CCCCCCHHHHHHHHHHcCCC----EEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 59999999999999999987 344445555421 236689999999999963 45553
No 51
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=21.07 E-value=2.1e+02 Score=25.95 Aligned_cols=54 Identities=7% Similarity=0.097 Sum_probs=41.4
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEE---eccChhHHHhhChHHHHHHHHCCC---ceEEEc
Q 036421 339 IKVSNKMDPKELVRLIVILNPKNKPGRITVI---VRMGAENMRVKLPHLIRAVRNAGQ---IVTWVS 399 (422)
Q Consensus 339 vKvGP~~~p~elv~L~~~LnP~~~pGRlTLI---~RmGa~~v~~~LP~LI~AV~~~G~---~ViW~c 399 (422)
|=+|+..+++++++.+...+|+ +..+ +-|+ ..+ ..++.+|+++++.|. ..+|+.
T Consensus 124 i~LG~~vp~e~iv~~~~~~~~d-----~v~l~~S~l~~-~~~-~~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 124 VDLGVDVLNENVVEEAAKHKGE-----KVLLVGSALMT-TSM-LGQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp EECCSSCCHHHHHHHHHHTTTS-----CEEEEEECSSH-HHH-THHHHHHHHHHHTTCGGGSEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHcCCC-----EEEEEchhccc-CcH-HHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3469999999999999999996 3444 4444 333 568999999999996 457775
No 52
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.01 E-value=1.7e+02 Score=25.75 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=40.4
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHCCC---ceEEEc
Q 036421 341 VSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQ---IVTWVS 399 (422)
Q Consensus 341 vGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmGa~~v~~~LP~LI~AV~~~G~---~ViW~c 399 (422)
+|+..+++++++.++..+|+- |-|-+.++. .+ ..++.+|+.+++.|. ..||+.
T Consensus 122 LG~~vp~~~l~~~~~~~~~d~----v~lS~~~~~-~~-~~~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 122 LGVDIEPGKFVEAVKKYQPDI----VGMSALLTT-TM-MNMKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp CCSSBCHHHHHHHHHHHCCSE----EEEECCSGG-GT-HHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCE----EEEeccccc-cH-HHHHHHHHHHHhcCCCCCCeEEEE
Confidence 799999999999999999872 333334443 33 568999999999985 577876
No 53
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=20.96 E-value=87 Score=33.24 Aligned_cols=59 Identities=29% Similarity=0.458 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHh-HHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCC
Q 036421 98 KLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRD-TFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNG 176 (422)
Q Consensus 98 ~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~-k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G 176 (422)
.|-+-|+-||. |....++++.||+ |+|+|..|--+ . .--||+ |||.+ + .+|
T Consensus 295 HLlQlL~LvAM------------EpP~s~~a~~iRdEKvKVLralrpi-~---~~~vVr-----GQY~~--g-----~~g 346 (541)
T 4e9i_A 295 HLTQILSLLTM------------EKPRSLSAEDIRDEKVQVLRQVVPA-N---PAECVL-----GQYTA--S-----ADG 346 (541)
T ss_dssp HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---TTSEEE-----EEEEC--C-----SSS
T ss_pred HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHHccCCC-C---ccceEE-----ccccC--C-----CCC
Confidence 67788888887 7888899999994 89999766432 1 112554 99986 2 267
Q ss_pred eecccccCC
Q 036421 177 VKLPSYRGD 185 (422)
Q Consensus 177 ~~LPsYRGD 185 (422)
.+|.||-+
T Consensus 347 -~v~gY~~e 354 (541)
T 4e9i_A 347 -STPGYLDD 354 (541)
T ss_dssp -SSCCGGGC
T ss_pred -CCCCccCC
Confidence 89999976
No 54
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=20.92 E-value=89 Score=27.10 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=46.0
Q ss_pred ccchhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcC
Q 036421 119 CAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNV 187 (422)
Q Consensus 119 CAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~V 187 (422)
-.+++.|++++...+-++.+...+..|....+..-+.|| .|||-- -=+-=.-+|-|.||..
T Consensus 43 Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~-~aGq~V-------~HlH~HvIPR~~~D~~ 103 (149)
T 3i24_A 43 ELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIG-ALGNLV-------PQLHIHHIARFTTDVA 103 (149)
T ss_dssp TCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTT
T ss_pred ccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEh-hhhCCC-------CEEEEEEeCCccCCCC
Confidence 467889999999888888898888888876666678999 688832 1122356889999864
No 55
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=20.56 E-value=45 Score=31.92 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=19.9
Q ss_pred HHHhhhccCCccee-eCCCCCHHHHHHHH
Q 036421 327 VEFLRGVANPLGIK-VSNKMDPKELVRLI 354 (422)
Q Consensus 327 VeflrgI~NPIGvK-vGP~~~p~elv~L~ 354 (422)
|+-++.+.-||.|| +|+++++++...+.
T Consensus 174 i~~vr~~~~Pv~vK~v~~g~~~e~a~~~~ 202 (332)
T 1vcf_A 174 LAELLPLPFPVMVKEVGHGLSREAALALR 202 (332)
T ss_dssp HHHHCSCSSCEEEECSSSCCCHHHHHHHT
T ss_pred HHHHHcCCCCEEEEecCCCCCHHHHHHHH
Confidence 33333333499999 99999999976554
No 56
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=20.18 E-value=1.2e+02 Score=29.79 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=27.9
Q ss_pred CeeEEecCCccchhhhcChhhHHhHHHHHHHHHHHHhhcCCCceEEeccccccCCC-CCCCcccccCCeecccccCC
Q 036421 110 NAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAK-PRSDPFEEKNGVKLPSYRGD 185 (422)
Q Consensus 110 ~aFlLQgGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~~~G~~LPsYRGD 185 (422)
+.|++=+|=|+=- +.+.+.+..+-|...+.-+. .++|- -+-|-| ||+++. ||||-
T Consensus 40 ~~l~vIaGPCsie----s~e~~~~~A~~lk~~~~~~~----~~~v~----k~~f~KapRTs~~---------sf~Gl 95 (298)
T 3fs2_A 40 APLALIAGPCQME----TRDHAFEMAGRLKEMTDKLG----IGLVY----KSSFDKANRTSLK---------AARGI 95 (298)
T ss_dssp SCCEEEEECSBCC----CHHHHHHHHHHHHHHHHHHT----CCEEE----ECBCCCCC------------------C
T ss_pred CceEEEEeCCcCC----CHHHHHHHHHHHHHHHHHcC----CcEEE----EcccccCCCCCCC---------CcCCc
Confidence 4688888989732 45555555555555554442 44332 456889 999987 89986
Done!