Your job contains 1 sequence.
>036425
MVISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQL
FHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEI
GVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHL
QDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKILNKEHEKTED
AKPTAVPTASSS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036425
(252 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2166449 - symbol:RPN8A "AT5G05780" species:370... 1100 2.0e-111 1
TAIR|locus:2074653 - symbol:MEE34 "AT3G11270" species:370... 1084 1.0e-109 1
UNIPROTKB|Q3ZBD0 - symbol:PSMD7 "26S proteasome non-ATPas... 751 1.9e-74 1
UNIPROTKB|P51665 - symbol:PSMD7 "26S proteasome non-ATPas... 745 8.4e-74 1
MGI|MGI:1351511 - symbol:Psmd7 "proteasome (prosome, macr... 744 1.1e-73 1
ZFIN|ZDB-GENE-030131-5541 - symbol:psmd7 "proteasome (pro... 742 1.7e-73 1
RGD|1306902 - symbol:Psmd7 "proteasome (prosome, macropai... 740 2.8e-73 1
FB|FBgn0002787 - symbol:Rpn8 "Regulatory particle non-ATP... 721 2.9e-71 1
DICTYBASE|DDB_G0279633 - symbol:psmD7 "26S proteasome non... 719 4.8e-71 1
ASPGD|ASPL0000029143 - symbol:AN5121 species:162425 "Emer... 693 2.7e-68 1
UNIPROTKB|G4NCJ9 - symbol:MGG_01059 "26S proteasome regul... 686 1.5e-67 1
POMBASE|SPCC1682.10 - symbol:rpn8 "19S proteasome regulat... 663 4.1e-65 1
UNIPROTKB|B4DXI8 - symbol:PSMD7 "26S proteasome non-ATPas... 649 1.2e-63 1
WB|WBGene00004464 - symbol:rpn-8 species:6239 "Caenorhabd... 629 1.6e-61 1
UNIPROTKB|O61792 - symbol:rpn-8 "Protein RPN-8" species:6... 629 1.6e-61 1
CGD|CAL0002371 - symbol:RPN8 species:5476 "Candida albica... 625 4.3e-61 1
UNIPROTKB|Q59YL2 - symbol:RPN8 "Likely 26S proteasome reg... 625 4.3e-61 1
SGD|S000005787 - symbol:RPN8 "non-ATPase regulatory subun... 544 1.7e-52 1
ZFIN|ZDB-GENE-050417-289 - symbol:cops6 "COP9 constitutiv... 228 5.1e-19 1
DICTYBASE|DDB_G0293180 - symbol:csn6 "Mov34/MPN/PAD-1 fam... 210 4.1e-17 1
TAIR|locus:2131493 - symbol:CSN6B "AT4G26430" species:370... 205 1.6e-16 1
TAIR|locus:2061206 - symbol:EIF2 "AT2G39990" species:3702... 200 4.7e-16 1
DICTYBASE|DDB_G0293254 - symbol:eif3F "eukaryotic transla... 195 1.6e-15 1
UNIPROTKB|E1C050 - symbol:EIF3F "Uncharacterized protein"... 197 1.9e-15 1
UNIPROTKB|O00303 - symbol:EIF3F "Eukaryotic translation i... 198 2.0e-15 1
UNIPROTKB|A5A6I3 - symbol:EIF3F "Eukaryotic translation i... 198 2.1e-15 1
UNIPROTKB|Q4R5B8 - symbol:EIF3F "Eukaryotic translation i... 198 2.1e-15 1
UNIPROTKB|A7TX81 - symbol:COPS6 "COP9 signalosome complex... 196 2.1e-15 1
UNIPROTKB|F1MG10 - symbol:COPS6 "COP9 signalosome complex... 196 2.2e-15 1
MGI|MGI:1349439 - symbol:Cops6 "COP9 (constitutive photom... 196 2.2e-15 1
UNIPROTKB|E7EM64 - symbol:COPS6 "COP9 signalosome complex... 196 2.3e-15 1
UNIPROTKB|Q7L5N1 - symbol:COPS6 "COP9 signalosome complex... 196 2.3e-15 1
UNIPROTKB|B3KSH1 - symbol:EIF3F "HCG1784554, isoform CRA_... 198 2.4e-15 1
UNIPROTKB|A6QQ21 - symbol:COPS6 "COP9 signalosome complex... 195 2.8e-15 1
RGD|1309919 - symbol:Cops6 "COP9 signalosome subunit 6" s... 196 2.9e-15 1
TAIR|locus:2177601 - symbol:CSN6A "AT5G56280" species:370... 194 3.3e-15 1
MGI|MGI:1913335 - symbol:Eif3f "eukaryotic translation in... 196 3.6e-15 1
UNIPROTKB|E1BLZ8 - symbol:EIF3F "Uncharacterized protein"... 195 5.7e-15 1
UNIPROTKB|B4DEW9 - symbol:EIF3F "Eukaryotic translation i... 184 2.3e-14 1
FB|FBgn0037270 - symbol:CG9769 species:7227 "Drosophila m... 182 3.8e-14 1
ASPGD|ASPL0000055955 - symbol:AN10182 species:162425 "Eme... 176 1.6e-12 1
FB|FBgn0028837 - symbol:CSN6 "COP9 complex homolog subuni... 174 5.1e-12 1
POMBASE|SPBC4C3.07 - symbol:SPBC4C3.07 "translation initi... 147 2.5e-08 1
UNIPROTKB|A4R0E5 - symbol:MGG_10653 "Eukaryotic translati... 123 3.1e-05 1
FB|FBgn0033069 - symbol:CG8335 species:7227 "Drosophila m... 112 0.00036 1
>TAIR|locus:2166449 [details] [associations]
symbol:RPN8A "AT5G05780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0042023 "DNA endoreduplication" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000502
GO:GO:0009965 eggNOG:COG1310 EMBL:AB005237 InterPro:IPR024969
Pfam:PF13012 KO:K03038 EMBL:U54560 EMBL:AF378878 EMBL:BT002610
EMBL:AY087393 IPI:IPI00538047 RefSeq:NP_196197.1 UniGene:At.20537
UniGene:At.67787 ProteinModelPortal:O24412 SMR:O24412 IntAct:O24412
STRING:O24412 PaxDb:O24412 PRIDE:O24412 EnsemblPlants:AT5G05780.1
GeneID:830463 KEGG:ath:AT5G05780 TAIR:At5g05780
HOGENOM:HOG000209236 InParanoid:O24412 OMA:RSIIALH PhylomeDB:O24412
ProtClustDB:PLN03246 Genevestigator:O24412 GermOnline:AT5G05780
Uniprot:O24412
Length = 308
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 213/247 (86%), Positives = 222/247 (89%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPFEEDDKDP IWFLDHNYHESM+ MFKRINAKEHVVGWYSTGPKLRENDLD+H LF+
Sbjct: 62 AVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNG 121
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
YVPNPVLVIIDVQPKELGIPTKAYY VEEVKENATQKSQKVFVHV +EIAAHEVEEIGVE
Sbjct: 122 YVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVE 181
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRDVKDTTISTLA EVT KLTALKGLDARLREIR YLDLVI+ KLPLNHEILYHLQDV
Sbjct: 182 HLLRDVKDTTISTLATEVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDV 241
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTEDAKP 243
FNLLPNLNV EL+KAFSVKTNDMMLVIYLSSLIRSVIALH EHEK ED+KP
Sbjct: 242 FNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKAEDSKP 301
Query: 244 TAVPTAS 250
A+P S
Sbjct: 302 VAIPATS 308
>TAIR|locus:2074653 [details] [associations]
symbol:MEE34 "AT3G11270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein catabolic
process" evidence=TAS] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0010162
"seed dormancy process" evidence=RCA] [GO:0010564 "regulation of
cell cycle process" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0048366 "leaf
development" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009793
GO:GO:0030163 GO:GO:0000502 EMBL:AC073395 InterPro:IPR024969
Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236 ProtClustDB:PLN03246
MEROPS:M67.973 EMBL:AY258412 EMBL:AK228032 IPI:IPI00536063
RefSeq:NP_187736.1 UniGene:At.39785 ProteinModelPortal:Q9C774
SMR:Q9C774 IntAct:Q9C774 STRING:Q9C774 PRIDE:Q9C774 DNASU:820298
EnsemblPlants:AT3G11270.1 GeneID:820298 KEGG:ath:AT3G11270
TAIR:At3g11270 InParanoid:Q9C774 OMA:INAKEHI PhylomeDB:Q9C774
Genevestigator:Q9C774 Uniprot:Q9C774
Length = 310
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 209/249 (83%), Positives = 222/249 (89%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPFEEDDKD IWFLDHNYHESM+ MFKRINAKEH+VGWYSTGPKLRENDLD+H LF+
Sbjct: 62 AVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNG 121
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
YVPNPVLVIIDVQPKELGIPTKAYY VEEVKENATQKSQ+VFVHVP+EIAAHEVEEIGVE
Sbjct: 122 YVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVE 181
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRDVKDTTISTLA EVT KLTALKGLDARLREIR YLDLVI+ KLPLNHEILYHLQDV
Sbjct: 182 HLLRDVKDTTISTLATEVTAKLTALKGLDARLREIRTYLDLVIEGKLPLNHEILYHLQDV 241
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTEDAKP 243
FNLLPNLNV EL+KAF+VKTNDMMLVIYLSSLIRSVIALH EHEK ED+KP
Sbjct: 242 FNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLINNKLLNKEHEKAEDSKP 301
Query: 244 TAVPTASSS 252
+P + S
Sbjct: 302 VDIPLITES 310
>UNIPROTKB|Q3ZBD0 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9913 "Bos taurus" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0000502 eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH EMBL:BC103437 IPI:IPI00685826 RefSeq:NP_001029595.1
UniGene:Bt.49378 ProteinModelPortal:Q3ZBD0 SMR:Q3ZBD0 STRING:Q3ZBD0
MEROPS:M67.973 PRIDE:Q3ZBD0 Ensembl:ENSBTAT00000024515
GeneID:512456 KEGG:bta:512456 CTD:5713 HOVERGEN:HBG035951
InParanoid:Q3ZBD0 OrthoDB:EOG441QC3 NextBio:20870397 Uniprot:Q3ZBD0
Length = 322
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 137/236 (58%), Positives = 182/236 (77%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 114
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y PN VLVIIDV+PK+LG+PT+AY VEEV ++ T S K F HV SEI A E EE+GVE
Sbjct: 115 YCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVE 173
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KDTT+ TL+ +T ++ LKGL+++L +IRGYL+ V KLP+NH+I+Y LQDV
Sbjct: 174 HLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRGYLEKVATGKLPINHQIIYQLQDV 233
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTE 239
FNLLP++++ E +KAF +KTND M+V+YL+SLIRSV+ALH + EK E
Sbjct: 234 FNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>UNIPROTKB|P51665 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0000502 "proteasome complex" evidence=TAS]
[GO:0005838 "proteasome regulatory particle" evidence=TAS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
eggNOG:COG1310 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH471166 GO:GO:0006521 Reactome:REACT_383 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:D50063 EMBL:BC000338 EMBL:BC012606
IPI:IPI00019927 PIR:JC4154 PIR:S65491 RefSeq:NP_002802.2
UniGene:Hs.440604 PDB:2O95 PDB:2O96 PDBsum:2O95 PDBsum:2O96
ProteinModelPortal:P51665 SMR:P51665 DIP:DIP-27572N IntAct:P51665
MINT:MINT-5002613 STRING:P51665 PhosphoSite:P51665 DMDM:20532412
PaxDb:P51665 PeptideAtlas:P51665 PRIDE:P51665 DNASU:5713
Ensembl:ENST00000219313 GeneID:5713 KEGG:hsa:5713 UCSC:uc002fcq.3
GeneCards:GC16P074330 HGNC:HGNC:9565 HPA:CAB019379 MIM:157970
neXtProt:NX_P51665 PharmGKB:PA33911 InParanoid:P51665
PhylomeDB:P51665 ChiTaRS:PSMD7 EvolutionaryTrace:P51665
GenomeRNAi:5713 NextBio:22194 ArrayExpress:P51665 Bgee:P51665
CleanEx:HS_PSMD7 Genevestigator:P51665 GermOnline:ENSG00000103035
Uniprot:P51665
Length = 324
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 136/236 (57%), Positives = 181/236 (76%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 114
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y PN VLVIIDV+PK+LG+PT+AY VEEV ++ T S K F HV SEI A E EE+GVE
Sbjct: 115 YCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVE 173
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KDTT+ TL+ +T ++ LKGL+++L +IR YL+ V KLP+NH+I+Y LQDV
Sbjct: 174 HLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDV 233
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTE 239
FNLLP++++ E +KAF +KTND M+V+YL+SLIRSV+ALH + EK E
Sbjct: 234 FNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>MGI|MGI:1351511 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 MGI:MGI:1351511 GO:GO:0000502 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 CTD:5713
HOVERGEN:HBG035951 OrthoDB:EOG441QC3 EMBL:M64641 EMBL:M64640
EMBL:M64634 EMBL:M64635 EMBL:M64636 EMBL:M64637 EMBL:M64639
EMBL:AK031013 EMBL:AK159825 IPI:IPI00114667 PIR:A40556
RefSeq:NP_034947.1 UniGene:Mm.18347 ProteinModelPortal:P26516
SMR:P26516 IntAct:P26516 STRING:P26516 PhosphoSite:P26516
PaxDb:P26516 PRIDE:P26516 Ensembl:ENSMUST00000044106 GeneID:17463
KEGG:mmu:17463 InParanoid:P26516 NextBio:292104 Bgee:P26516
Genevestigator:P26516 GermOnline:ENSMUSG00000039067 Uniprot:P26516
Length = 321
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 136/236 (57%), Positives = 180/236 (76%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 114
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y PN VLVIIDV+PK+LG+PT+AY VEEV ++ T S K F HV SEI A E EE+GVE
Sbjct: 115 YCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVE 173
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KDTT+ TL+ +T ++ LKGL+++L +IR YL+ V KLP+NH+I+Y LQDV
Sbjct: 174 HLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQIIYQLQDV 233
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTE 239
FNLLP+ ++ E +KAF +KTND M+V+YL+SLIRSV+ALH + EK E
Sbjct: 234 FNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>ZFIN|ZDB-GENE-030131-5541 [details] [associations]
symbol:psmd7 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 7 (Mov34 homolog)" species:7955 "Danio rerio"
[GO:0021551 "central nervous system morphogenesis" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 ZFIN:ZDB-GENE-030131-5541 GO:GO:0000502
eggNOG:COG1310 GO:GO:0021551 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:BC044358 EMBL:BC066605 IPI:IPI00481317
RefSeq:NP_956083.1 UniGene:Dr.80368 SMR:Q7ZYX7 STRING:Q7ZYX7
Ensembl:ENSDART00000098229 GeneID:327330 KEGG:dre:327330
InParanoid:Q7ZYX7 NextBio:20809984 Uniprot:Q7ZYX7
Length = 327
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 136/236 (57%), Positives = 180/236 (76%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKQ 114
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y N VLVIIDV+PK+LG+PT+AY VEEV ++ T S K F HV SEI A E EE+GVE
Sbjct: 115 YCSNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVE 173
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KDTT+ TL+ +T ++ LKGL+++L +I+ YL+ V KLP+NH+I+Y LQDV
Sbjct: 174 HLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIKSYLEKVATGKLPINHQIIYQLQDV 233
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTE 239
FNLLP++N+ E +KAF +KTND MLV+YL+SLIRSV+ALH + EK E
Sbjct: 234 FNLLPDVNLQEFVKAFYLKTNDQMLVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>RGD|1306902 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 RGD:1306902 GO:GO:0000502 EMBL:CH473972
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 OMA:RSIIALH CTD:5713 OrthoDB:EOG441QC3 IPI:IPI00359611
RefSeq:NP_001100896.1 UniGene:Rn.20659 IntAct:D4AEH3
Ensembl:ENSRNOT00000019104 GeneID:307821 KEGG:rno:307821
UCSC:RGD:1306902 NextBio:657930 Uniprot:D4AEH3
Length = 320
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 136/236 (57%), Positives = 179/236 (75%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 114
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y PN VLVIIDV+PK+LG+PT+AY VEEV ++ T S K F HV SEI A E EE+GVE
Sbjct: 115 YCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVE 173
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KDTT+ TL+ +T ++ LKGL+++L +IR YL+ V KLP+NH I+Y LQDV
Sbjct: 174 HLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRTYLEKVASGKLPINHHIIYQLQDV 233
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTE 239
FNLLP+ ++ E +KAF +KTND M+V+YL+SLIRSV+ALH + EK E
Sbjct: 234 FNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>FB|FBgn0002787 [details] [associations]
symbol:Rpn8 "Regulatory particle non-ATPase 8" species:7227
"Drosophila melanogaster" [GO:0004175 "endopeptidase activity"
evidence=NAS;IDA] [GO:0000502 "proteasome complex"
evidence=NAS;IDA] [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=ISS;NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0009987 "cellular process" evidence=IMP]
[GO:0030425 "dendrite" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:AE013599 GO:GO:0022008 GO:GO:0008283 GO:GO:0030425
GO:GO:0006508 GO:GO:0004175 GO:GO:0008541 eggNOG:COG1310
GO:GO:0000022 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 BRENDA:3.4.25.1 OMA:RSIIALH
MEROPS:M67.973 EMBL:M64643 EMBL:AY089283 RefSeq:NP_523845.2
UniGene:Dm.770 ProteinModelPortal:P26270 SMR:P26270 DIP:DIP-22847N
IntAct:P26270 MINT:MINT-819762 STRING:P26270 PaxDb:P26270
EnsemblMetazoa:FBtr0072290 EnsemblMetazoa:FBtr0332921 GeneID:37894
KEGG:dme:Dmel_CG3416 UCSC:CG3416-RA CTD:37894 FlyBase:FBgn0002787
InParanoid:P26270 OrthoDB:EOG4BG7BS PhylomeDB:P26270
GenomeRNAi:37894 NextBio:805917 Bgee:P26270 GermOnline:CG3416
Uniprot:P26270
Length = 338
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 129/220 (58%), Positives = 173/220 (78%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E VVGWY TGPKL +ND+ I++L
Sbjct: 58 AVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRR 117
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y PN VLVIID +PK+LG+PT+AY VEEV ++ + S K F HVPSEI A E EE+GVE
Sbjct: 118 YCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDDGSPTS-KTFEHVPSEIGAEEAEEVGVE 176
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KDTT+ +L+ ++T +L LKGL+A+LR+I+ YL V D K+P+NH+I+Y LQD+
Sbjct: 177 HLLRDIKDTTVGSLSQKITNQLMGLKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDI 236
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
FNLLP++ + VKTND MLV+YL+S++RS+IALH
Sbjct: 237 FNLLPDITNDQFTGTMYVKTNDQMLVVYLASMVRSIIALH 276
>DICTYBASE|DDB_G0279633 [details] [associations]
symbol:psmD7 "26S proteasome non-ATPase regulatory
subunit 7" species:44689 "Dictyostelium discoideum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 dictyBase:DDB_G0279633 GenomeReviews:CM000152_GR
GO:GO:0006511 EMBL:AAFI02000032 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 OMA:RSIIALH MEROPS:M67.973
RefSeq:XP_641565.1 ProteinModelPortal:Q54WI8 SMR:Q54WI8
STRING:Q54WI8 EnsemblProtists:DDB0232987 GeneID:8622140
KEGG:ddi:DDB_G0279633 ProtClustDB:CLSZ2434496 Uniprot:Q54WI8
Length = 325
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 136/248 (54%), Positives = 183/248 (73%)
Query: 5 VPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY 64
+PFEED+ +P IWFLDHN+HE+M++MFK+INA+E+VVGWYSTGPK+R D DI++LF Y
Sbjct: 54 LPFEEDEANPNIWFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRY 113
Query: 65 VPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEH 124
PNPV+VIIDV PKELGIPTK+Y VEE+ ++ ++ + + F H+PS I A E EEI +EH
Sbjct: 114 TPNPVMVIIDVAPKELGIPTKSYVTVEEINKDTSESTMR-FQHIPSSIDAVEAEEICIEH 172
Query: 125 LLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVF 184
LLRDVKD++IS+L ++T K +LK L L+E++ YL LV D LP NH+I+ ++QD+
Sbjct: 173 LLRDVKDSSISSLTTQITDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQIIGYIQDII 232
Query: 185 NLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTEDAKPT 244
NL PNLN E+ K+F+V+ ND M VIYLSS+IRS+IALH E EK D +
Sbjct: 233 NLSPNLNANEISKSFAVQNNDTMSVIYLSSMIRSIIALHNLIINKTANREAEKKADIINS 292
Query: 245 AVPTASSS 252
PT ++S
Sbjct: 293 TPPTTATS 300
>ASPGD|ASPL0000029143 [details] [associations]
symbol:AN5121 species:162425 "Emericella nidulans"
[GO:0005622 "intracellular" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0034515 "proteasome storage granule"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:BN001305 InterPro:IPR024969 Pfam:PF13012 HOGENOM:HOG000209236
OMA:RSIIALH EnsemblFungi:CADANIAT00003105 Uniprot:C8VEY3
Length = 349
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 132/237 (55%), Positives = 175/237 (73%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPFEED+KDP +WFLDHN+ ESM MFK+INA+E ++GWY +GPKLR +DL+I++LF
Sbjct: 61 AVPFEEDEKDPSVWFLDHNFVESMRDMFKKINAREKLIGWYHSGPKLRASDLEINELFKR 120
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y PNP+LVI+DVQPKE+G+PT AY+ V+E+K++ T S + FVH PS I A E EEIGVE
Sbjct: 121 YTPNPLLVIVDVQPKEVGVPTDAYFAVDEIKDDGTTTS-RTFVHTPSTIEAEEAEEIGVE 179
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD++D + TL+ +T +L +L+GL RLR+I YL V+D +LP+NH IL +LQDV
Sbjct: 180 HLLRDIRDVAVGTLSTRITSQLQSLQGLHLRLRDIGQYLQKVLDHELPVNHAILGNLQDV 239
Query: 184 FNLLPNLNV-----------------AELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
FNLLPNL+ AEL +A S+KTND ++ IYLSSL+R+V A H
Sbjct: 240 FNLLPNLSTPSTTARVGGEPEQSTDNAELARAMSIKTNDQLMAIYLSSLVRAVTAYH 296
>UNIPROTKB|G4NCJ9 [details] [associations]
symbol:MGG_01059 "26S proteasome regulatory subunit rpn-8"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:CM001235 GO:GO:0000502 InterPro:IPR024969 Pfam:PF13012
KO:K03038 RefSeq:XP_003717880.1 ProteinModelPortal:G4NCJ9
SMR:G4NCJ9 EnsemblFungi:MGG_01059T0 GeneID:2674847
KEGG:mgr:MGG_01059 Uniprot:G4NCJ9
Length = 357
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 131/247 (53%), Positives = 177/247 (71%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPFEED+K+P +WFLDHNY ESM MFK++NA+E ++GWY +GPKLR +DL+I++LF
Sbjct: 63 AVPFEEDEKNPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLEINELFKR 122
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y PNP+LVIIDVQPKE G+PT AY+ V+E+K++ T S + FVH PS I A E EEIGVE
Sbjct: 123 YTPNPLLVIIDVQPKEAGVPTDAYFAVDEIKDDGTATS-RTFVHTPSIIEAEEAEEIGVE 181
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD++D + TL+ +T +L +L+GL RLR+I+ YL V+D LP+NH IL +LQDV
Sbjct: 182 HLLRDIRDVAVGTLSTRLTNQLQSLQGLHLRLRDIQAYLQKVLDGDLPVNHAILGNLQDV 241
Query: 184 FNLLPNLNVAE---------LIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXE 234
FNLLPNL+ L A +VKTND ++ IYLSSLIR++ A H +
Sbjct: 242 FNLLPNLSTPSGGKGSGDGGLEHAMAVKTNDQLMSIYLSSLIRAITAFHDLIENKIQNRQ 301
Query: 235 HEKTEDA 241
++ ++A
Sbjct: 302 QQEEKEA 308
>POMBASE|SPCC1682.10 [details] [associations]
symbol:rpn8 "19S proteasome regulatory subunit Rpn8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IC]
[GO:0008541 "proteasome regulatory particle, lid subcomplex"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 PomBase:SPCC1682.10 GO:GO:0005829 GO:GO:0007346
GO:GO:0005635 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0008541 eggNOG:COG1310 GO:GO:0004843 InterPro:IPR024969
Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236 MEROPS:M67.973
PIR:T41067 RefSeq:NP_587803.1 ProteinModelPortal:O74440 SMR:O74440
IntAct:O74440 STRING:O74440 PRIDE:O74440 EnsemblFungi:SPCC1682.10.1
GeneID:2538912 KEGG:spo:SPCC1682.10 OMA:KKINANE OrthoDB:EOG4QC4FM
NextBio:20800090 Uniprot:O74440
Length = 324
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 127/251 (50%), Positives = 176/251 (70%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
++PFEED+K+ +WFLDHN+ ESM MFK+INA E +VGWY TGP+LR +DL+I+ L
Sbjct: 62 AIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKK 121
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y+PNPVLVIIDV+PK +G+PT AY+ ++E++++ + KS + FVH+PS I A E EEIGVE
Sbjct: 122 YIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGS-KSSRTFVHLPSSIEAEEAEEIGVE 180
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD +D ++ TLA VT + +L+GL RL EI YL V+D +LP+NH IL LQ V
Sbjct: 181 HLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSV 240
Query: 184 FNLLPNLNVAELI----------KAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXX 233
FNLLPN+ ++ +AF+V +ND ++ IY+SS++R+VIALH
Sbjct: 241 FNLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSLAASK 300
Query: 234 EHEKTEDAKPT 244
E+ +D KPT
Sbjct: 301 AMEQ-QDIKPT 310
>UNIPROTKB|B4DXI8 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 GO:GO:0000502
InterPro:IPR024969 Pfam:PF13012 HOVERGEN:HBG035951
UniGene:Hs.440604 HGNC:HGNC:9565 ChiTaRS:PSMD7 EMBL:AC009120
EMBL:AK301996 IPI:IPI01009629 SMR:B4DXI8 STRING:B4DXI8
Ensembl:ENST00000540379 Uniprot:B4DXI8
Length = 247
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 121/213 (56%), Positives = 161/213 (75%)
Query: 27 MYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKA 86
MY MFK++NA+E +VGWY TGPKL +ND+ I++L Y PN VLVIIDV+PK+LG+PT+A
Sbjct: 1 MYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEA 60
Query: 87 YYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLT 146
Y VEEV ++ T S K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+ +T ++
Sbjct: 61 YISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVH 119
Query: 147 ALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDM 206
LKGL+++L +IR YL+ V KLP+NH+I+Y LQDVFNLLP++++ E +KAF +KTND
Sbjct: 120 GLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQ 179
Query: 207 MLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTE 239
M+V+YL+SLIRSV+ALH + EK E
Sbjct: 180 MVVVYLASLIRSVVALHNLINNKIANRDAEKKE 212
>WB|WBGene00004464 [details] [associations]
symbol:rpn-8 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0000003 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 EMBL:FO080613 KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 PIR:T33096
RefSeq:NP_491319.1 ProteinModelPortal:O61792 SMR:O61792
IntAct:O61792 MINT:MINT-210994 STRING:O61792 PaxDb:O61792
EnsemblMetazoa:R12E2.3.1 EnsemblMetazoa:R12E2.3.2 GeneID:172009
KEGG:cel:CELE_R12E2.3 UCSC:R12E2.3.1 CTD:172009 WormBase:R12E2.3
InParanoid:O61792 NextBio:873645 Uniprot:O61792
Length = 362
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 114/237 (48%), Positives = 165/237 (69%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD WFLD +Y ESMY MF ++ AKE +VGWY TGPKL +ND+ I++
Sbjct: 88 AVPFDEDDKDKSTWFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKR 147
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
+ PNPVLVIID +PK +G+PT+AY +V+EV ++ T K F HVPS+I A E EE+GVE
Sbjct: 148 FCPNPVLVIIDAEPKNIGLPTEAYIEVQEVHDDGTPPI-KTFEHVPSDIGAEEAEEVGVE 206
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KD T TL+ +T +L L+GL ++L I YL ++ LP+NH ++Y++Q+V
Sbjct: 207 HLLRDIKDQTAGTLSQRITDQLMGLRGLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEV 266
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTED 240
NLLP++ + I + +V+TND ++ +Y+ SL+RSV+ALH + EK ++
Sbjct: 267 LNLLPDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQE 323
>UNIPROTKB|O61792 [details] [associations]
symbol:rpn-8 "Protein RPN-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0008340
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 EMBL:FO080613 KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 PIR:T33096
RefSeq:NP_491319.1 ProteinModelPortal:O61792 SMR:O61792
IntAct:O61792 MINT:MINT-210994 STRING:O61792 PaxDb:O61792
EnsemblMetazoa:R12E2.3.1 EnsemblMetazoa:R12E2.3.2 GeneID:172009
KEGG:cel:CELE_R12E2.3 UCSC:R12E2.3.1 CTD:172009 WormBase:R12E2.3
InParanoid:O61792 NextBio:873645 Uniprot:O61792
Length = 362
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 114/237 (48%), Positives = 165/237 (69%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VPF+EDDKD WFLD +Y ESMY MF ++ AKE +VGWY TGPKL +ND+ I++
Sbjct: 88 AVPFDEDDKDKSTWFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKR 147
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
+ PNPVLVIID +PK +G+PT+AY +V+EV ++ T K F HVPS+I A E EE+GVE
Sbjct: 148 FCPNPVLVIIDAEPKNIGLPTEAYIEVQEVHDDGTPPI-KTFEHVPSDIGAEEAEEVGVE 206
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD+KD T TL+ +T +L L+GL ++L I YL ++ LP+NH ++Y++Q+V
Sbjct: 207 HLLRDIKDQTAGTLSQRITDQLMGLRGLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEV 266
Query: 184 FNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEKTED 240
NLLP++ + I + +V+TND ++ +Y+ SL+RSV+ALH + EK ++
Sbjct: 267 LNLLPDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQE 323
>CGD|CAL0002371 [details] [associations]
symbol:RPN8 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] [GO:0008541 "proteasome regulatory particle,
lid subcomplex" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0034515 "proteasome storage granule"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
CGD:CAL0002371 GO:GO:0035690 EMBL:AACQ01000100 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236
MEROPS:M67.973 RefSeq:XP_714586.1 ProteinModelPortal:Q59YL2
SMR:Q59YL2 STRING:Q59YL2 GeneID:3643770 KEGG:cal:CaO19.3168
Uniprot:Q59YL2
Length = 330
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 125/261 (47%), Positives = 177/261 (67%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
++PFEED+K+PG+WFLDHN+ +SM MFK+INAKE ++GWY +GPKL+ +DL I+++F
Sbjct: 63 AIPFEEDEKNPGVWFLDHNFIDSMGEMFKKINAKEKLIGWYHSGPKLKPSDLKINEVFRR 122
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y NP+L+I+DVQP+E+GIPT AY+ V+++K + + ++K F+HVPS I A E EEIGVE
Sbjct: 123 YTDNPLLLIVDVQPREVGIPTDAYFAVDDIKNDGSA-AEKTFIHVPSLIEAEEAEEIGVE 181
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD++D L+ V+ +L GL +L EI YLD V +KLP+NH IL LQ+V
Sbjct: 182 HLLRDIRDQAAGNLSLRVSETHQSLLGLHQKLGEIANYLDKVYQKKLPMNHTILGKLQNV 241
Query: 184 FNLLPNL-------------NVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXX 230
FNLLPNL + L AF+VKTND +++IY+S+L+R++IA H
Sbjct: 242 FNLLPNLMQQSGSDLDGGSDSSHALATAFTVKTNDELMIIYISTLVRAIIAFHDLIENKL 301
Query: 231 XXXEHEKTEDAKPTAVPTASS 251
E++K + K A SS
Sbjct: 302 ---ENKKLNENKAQASVAESS 319
>UNIPROTKB|Q59YL2 [details] [associations]
symbol:RPN8 "Likely 26S proteasome regulatory particle
subunit Rpn8p" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
CGD:CAL0002371 GO:GO:0035690 EMBL:AACQ01000100 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236
MEROPS:M67.973 RefSeq:XP_714586.1 ProteinModelPortal:Q59YL2
SMR:Q59YL2 STRING:Q59YL2 GeneID:3643770 KEGG:cal:CaO19.3168
Uniprot:Q59YL2
Length = 330
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 125/261 (47%), Positives = 177/261 (67%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
++PFEED+K+PG+WFLDHN+ +SM MFK+INAKE ++GWY +GPKL+ +DL I+++F
Sbjct: 63 AIPFEEDEKNPGVWFLDHNFIDSMGEMFKKINAKEKLIGWYHSGPKLKPSDLKINEVFRR 122
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
Y NP+L+I+DVQP+E+GIPT AY+ V+++K + + ++K F+HVPS I A E EEIGVE
Sbjct: 123 YTDNPLLLIVDVQPREVGIPTDAYFAVDDIKNDGSA-AEKTFIHVPSLIEAEEAEEIGVE 181
Query: 124 HLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDV 183
HLLRD++D L+ V+ +L GL +L EI YLD V +KLP+NH IL LQ+V
Sbjct: 182 HLLRDIRDQAAGNLSLRVSETHQSLLGLHQKLGEIANYLDKVYQKKLPMNHTILGKLQNV 241
Query: 184 FNLLPNL-------------NVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXX 230
FNLLPNL + L AF+VKTND +++IY+S+L+R++IA H
Sbjct: 242 FNLLPNLMQQSGSDLDGGSDSSHALATAFTVKTNDELMIIYISTLVRAIIAFHDLIENKL 301
Query: 231 XXXEHEKTEDAKPTAVPTASS 251
E++K + K A SS
Sbjct: 302 ---ENKKLNENKAQASVAESS 319
>SGD|S000005787 [details] [associations]
symbol:RPN8 "non-ATPase regulatory subunit of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008541
"proteasome regulatory particle, lid subcomplex" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034515 "proteasome storage granule" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 SGD:S000005787 EMBL:BK006948 GO:GO:0008541
GO:GO:0006511 eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 RefSeq:NP_014907.3 GeneID:854437
KEGG:sce:YOR264W GO:GO:0034515 RefSeq:NP_014904.3 PDB:4B4T
PDBsum:4B4T GeneID:854435 KEGG:sce:YOR261C KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 OrthoDB:EOG4QC4FM
EMBL:Z75169 EMBL:AY558039 PIR:S67158 ProteinModelPortal:Q08723
SMR:Q08723 DIP:DIP-1574N IntAct:Q08723 MINT:MINT-405204
STRING:Q08723 PaxDb:Q08723 PeptideAtlas:Q08723 EnsemblFungi:YOR261C
NextBio:976670 Genevestigator:Q08723 GermOnline:YOR261C
Uniprot:Q08723
Length = 338
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 101/192 (52%), Positives = 144/192 (75%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
++PFEED+K+ +WFLDHNY E+M M K+INAKE ++GWY +GPKLR +DL I++LF
Sbjct: 53 ALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKK 112
Query: 64 YVPN-PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGV 122
Y N P+L+I+DV+ + +G+PT AY +E+VK++ T ++K F+H+P I A E EEIGV
Sbjct: 113 YTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTS-TEKTFLHLPCTIEAEEAEEIGV 171
Query: 123 EHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQD 182
EHLLRDV+D L+ +T +L +LKGL ++L+++ YLD VI+++LP+NH IL LQD
Sbjct: 172 EHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQD 231
Query: 183 VFNLLPNLNVAE 194
VFNLLPNL +
Sbjct: 232 VFNLLPNLGTPD 243
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 55/173 (31%), Positives = 91/173 (52%)
Query: 67 NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVF---VHVPSEIAAHEVEEIGVE 123
NP+L+I+DV+ + +G+PT AY +E+VK++ T + + +E A E+ +
Sbjct: 117 NPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAE-EAEEIGVEHLL 175
Query: 124 HLLRDVKDTTIST-LANEVT---GKLTALKGLDARL-REIRGYLDL--VIDEKLPLNHEI 176
+RD +S L N++ G + LK + L + I L + I KL +
Sbjct: 176 RDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNL 235
Query: 177 LYHLQ-------DVFNLLPNLNVAE-LIKAFSVKTNDMMLVIYLSSLIRSVIA 221
L +L DV N +N++ L KA +VKTND ++VIY+S+L+RS+IA
Sbjct: 236 LPNLGTPDDDEIDVENH-DRINISNNLQKALTVKTNDELMVIYISNLVRSIIA 287
>ZFIN|ZDB-GENE-050417-289 [details] [associations]
symbol:cops6 "COP9 constitutive photomorphogenic
homolog subunit 6 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0060026 "convergent
extension" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021551 "central nervous system morphogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-050417-289 GO:GO:0007420 GO:GO:0009953 GO:GO:0060026
GO:GO:0021551 KO:K12179 InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 EMBL:BC093188 IPI:IPI00570094
RefSeq:NP_001017768.1 UniGene:Dr.42675 ProteinModelPortal:Q567F8
PRIDE:Q567F8 GeneID:550465 KEGG:dre:550465 NextBio:20879709
Uniprot:Q567F8
Length = 297
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 54/202 (26%), Positives = 104/202 (51%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG ++D+ IH+ + +P+ + ++ K
Sbjct: 70 IDKEYYYTKEEQFKQVFKEMEFLGWYTTGGSPDQSDIHIHKQVCEIIESPLFLKLNPMTK 129
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + + ++ +F +P +A E E IGV+H+ R T ST
Sbjct: 130 HTDLPVSVF---ESVIDIISGEATMLFAELPYTLATEEAERIGVDHVARMTATGTGENST 186
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ V ++P NHEIL + + LP LN +
Sbjct: 187 VAEHLIAQHSAIKMLHSRVKVILEYVKAVQAGEVPFNHEILREANALCHRLPVLNTLKFK 246
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 247 TDFYDQCNDVGLMAYLGTITKT 268
>DICTYBASE|DDB_G0293180 [details] [associations]
symbol:csn6 "Mov34/MPN/PAD-1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IEA;IDA] [GO:0008180 "signalosome"
evidence=IEA;ISS;IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 dictyBase:DDB_G0293180 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0008180 eggNOG:COG1310
EMBL:AAFI02000199 KO:K12179 OMA:IGKQKGR InterPro:IPR024969
Pfam:PF13012 EMBL:DQ309434 RefSeq:XP_629327.1
ProteinModelPortal:Q54C92 STRING:Q54C92 PRIDE:Q54C92
EnsemblProtists:DDB0233105 GeneID:8629051 KEGG:ddi:DDB_G0293180
ProtClustDB:CLSZ2429325 Uniprot:Q54C92
Length = 309
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 50/187 (26%), Positives = 99/187 (52%)
Query: 40 VVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQ-PKELGIPTKAYY-DVEEVKENA 97
++GWYSTG ++ ++D+ +H+ + +P+ +++D PK +P Y ++ V +
Sbjct: 107 LLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIYESELHIVNDEP 166
Query: 98 TQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTI-STLANEVTGKLTALKGLDARLR 156
T +FV P +I E E IGV H+ + + S L + + A+ L+ R++
Sbjct: 167 TT----IFVKTPYKIQTGEAERIGVNHIAKVTPSGSEGSGLTSHLFTMHNAISMLNIRVK 222
Query: 157 EIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLI 216
+ YL V +++LP IL + N LP ++ + K++ + ND++LV YL+S+
Sbjct: 223 ALSDYLQAVKEKRLPYEQNILRKASSLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASIT 282
Query: 217 RSVIALH 223
++ +L+
Sbjct: 283 KTSASLN 289
>TAIR|locus:2131493 [details] [associations]
symbol:CSN6B "AT4G26430" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010387 "signalosome assembly" evidence=IMP] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0000338 "protein deneddylation"
evidence=TAS] [GO:0008180 "signalosome" evidence=IPI]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009585
EMBL:AL161565 EMBL:AL022223 GO:GO:0008180 eggNOG:COG1310
GO:GO:0000338 GO:GO:0010387 HOGENOM:HOG000253002 KO:K12179
ProtClustDB:CLSN2689622 InterPro:IPR024969 Pfam:PF13012
EMBL:AF434762 EMBL:AF395064 EMBL:AY080638 EMBL:BT002345
EMBL:AY087556 IPI:IPI00531332 PIR:T05061 RefSeq:NP_567746.1
UniGene:At.26288 UniGene:At.28451 UniGene:At.75239
ProteinModelPortal:Q8W1P0 SMR:Q8W1P0 IntAct:Q8W1P0 STRING:Q8W1P0
PaxDb:Q8W1P0 PRIDE:Q8W1P0 EnsemblPlants:AT4G26430.1 GeneID:828749
KEGG:ath:AT4G26430 TAIR:At4g26430 InParanoid:Q8W1P0 OMA:AMITNCT
PhylomeDB:Q8W1P0 Genevestigator:Q8W1P0 GermOnline:AT4G26430
Uniprot:Q8W1P0
Length = 317
Score = 205 (77.2 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 57/210 (27%), Positives = 105/210 (50%)
Query: 13 DPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVI 72
DP + LD ++ E ++K++ +V+GWYSTG E+D+ IH+ + +PV V+
Sbjct: 82 DPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHKALMDINESPVYVL 141
Query: 73 ID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRD 128
++ + + +P Y V + Q +FVH I E E I V+H+ L+
Sbjct: 142 LNPAINHAQKDLPVTIYESEFHVIDGIPQS---IFVHTSYTIETVEAERISVDHVAHLKP 198
Query: 129 VKDTTIST-LANEVTGKLTALKGLDARLREIRGYLDLVIDEK--LPLNHEILYHLQDVFN 185
+ +T LA +TG +A+K L++R+R + Y +V +K P + +L + +
Sbjct: 199 SDGGSAATQLAAHLTGIHSAIKMLNSRIRVL--YQHIVAMQKGDKPCENSVLRQVSSLLR 256
Query: 186 LLPNLNVAELIKAFSVKTNDMMLVIYLSSL 215
LP + + F ++ ND +L+ YL+ +
Sbjct: 257 SLPAAESEKFNENFLMEYNDKLLMSYLAMI 286
>TAIR|locus:2061206 [details] [associations]
symbol:EIF2 "AT2G39990" species:3702 "Arabidopsis
thaliana" [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0009790 "embryo development" evidence=IMP] [GO:0009846 "pollen
germination" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0005829
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0009790 GO:GO:0003743 eggNOG:COG1310 GO:GO:0009846
EMBL:AF002109 InterPro:IPR024969 Pfam:PF13012 KO:K03249 OMA:HPVVLFQ
HAMAP:MF_03005 EMBL:U54561 EMBL:AY045824 EMBL:AY091363
IPI:IPI00527838 PIR:H84823 RefSeq:NP_181528.1 UniGene:At.10968
ProteinModelPortal:O04202 SMR:O04202 STRING:O04202 PaxDb:O04202
PRIDE:O04202 EnsemblPlants:AT2G39990.1 GeneID:818587
KEGG:ath:AT2G39990 GeneFarm:2126 TAIR:At2g39990
HOGENOM:HOG000241154 InParanoid:O04202 PhylomeDB:O04202
ProtClustDB:CLSN2683386 Genevestigator:O04202 GermOnline:AT2G39990
Uniprot:O04202
Length = 293
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 55/222 (24%), Positives = 104/222 (46%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VP E + D +YH +M + ++N+KE +VGWYSTG + IH +
Sbjct: 73 AVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAR 129
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVH---VPSEIAAHEVEEI 120
VPNP+ + +D KA+ V N + +++ H +P ++ + E +
Sbjct: 130 EVPNPIHLTVDTGFTNGEGTIKAF-----VSSNLSLGDRQLVAHFQEIPVDLRMVDAERV 184
Query: 121 GVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHL 180
G + L K T++ L N++ G ++ L + ++ Y+D V+ ++ ++ I +
Sbjct: 185 GFDVL----KATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFI 240
Query: 181 QDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIAL 222
D LP L + D +L++YLSS+ R+ ++L
Sbjct: 241 ADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSL 282
>DICTYBASE|DDB_G0293254 [details] [associations]
symbol:eif3F "eukaryotic translation initiation
factor 3 (eIF3) subunit 5" species:44689 "Dictyostelium discoideum"
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
dictyBase:DDB_G0293254 GenomeReviews:CM000155_GR EMBL:AAFI02000200
GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005
RefSeq:XP_629217.1 ProteinModelPortal:Q54C49 STRING:Q54C49
PRIDE:Q54C49 EnsemblProtists:DDB0233924 GeneID:8629099
KEGG:ddi:DDB_G0293254 ProtClustDB:CLSZ2429292 Uniprot:Q54C49
Length = 284
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 49/206 (23%), Positives = 93/206 (45%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQ 76
++ Y M + + + +E ++GWY+TG + EN + I+ + + + N P+ + +D
Sbjct: 70 VEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTG 129
Query: 77 PKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTIST 136
+ AY + N F +P EI E E G+E + + D ++
Sbjct: 130 LTNDTMGIHAYM-AHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTS 188
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
L +E+ +L LD L I Y++ V ++ + + L LP N +
Sbjct: 189 LLSELESLQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQALPKANAQVMD 248
Query: 197 KAFSVKTNDMMLVIYLSSLIRSVIAL 222
K + D+++++YLSSL RS +A+
Sbjct: 249 KVINNSVKDLLMIVYLSSLTRSQLAV 274
>UNIPROTKB|E1C050 [details] [associations]
symbol:EIF3F "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0003743 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ
CTD:8665 EMBL:AC140789 IPI:IPI00578336 RefSeq:XP_421624.1
PRIDE:E1C050 Ensembl:ENSGALT00000008544 GeneID:423748
KEGG:gga:423748 NextBio:20826172 Uniprot:E1C050
Length = 332
Score = 197 (74.4 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 49/221 (22%), Positives = 108/221 (48%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
SVP E + + + D + ++MY + K+++ E ++GWY+TG + E+ + IH+ +
Sbjct: 111 SVPHNESEDEVAV---DMEFAKNMYELHKKVSPSEIILGWYATGHDITEHSVLIHEYYSR 167
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
NP+ + +D + + KAY T +F + + ++ E IGV+
Sbjct: 168 EAHNPIHLTVDTSLQNSRMSIKAYVSAPMGVPGKTMGV--MFTPLTVKYVYYDTERIGVD 225
Query: 124 HLLRDV-KDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQD 182
+++ + L++++ +A + L + Y + V+ K+ ++ + L D
Sbjct: 226 LIMKTCFSPNRVIGLSSDLQQVGSASARIQDTLGMVLQYAEDVLSGKVAADNTVGRFLMD 285
Query: 183 VFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
+ N +P ++ + + ND+++V YL++L +S IAL+
Sbjct: 286 LINQVPKISPEDFETMLNSNINDLLMVTYLANLTQSQIALN 326
>UNIPROTKB|O00303 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9606 "Homo sapiens" [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=IDA;TAS] [GO:0003743 "translation initiation factor
activity" evidence=IC;IDA;TAS] [GO:0006413 "translational
initiation" evidence=IC;IDA;TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0044267 "cellular protein
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 GO:GO:0008234 GO:GO:0006508 GO:GO:0003743
eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012
KO:K03249 HAMAP:MF_03005 Reactome:REACT_1762 HOGENOM:HOG000241154
EMBL:U94855 EMBL:AK095574 EMBL:AK289637 EMBL:AK291354 EMBL:BT006894
EMBL:CR456959 EMBL:BC000490 IPI:IPI00941255 RefSeq:NP_003745.1
UniGene:Hs.516023 ProteinModelPortal:O00303 SMR:O00303
DIP:DIP-35580N IntAct:O00303 MINT:MINT-5000761 STRING:O00303
MEROPS:M67.974 PhosphoSite:O00303 PaxDb:O00303 PRIDE:O00303
DNASU:8665 Ensembl:ENST00000309828 Ensembl:ENST00000533626
GeneID:8665 KEGG:hsa:8665 UCSC:uc001mfw.3 CTD:8665
GeneCards:GC11P007966 HGNC:HGNC:3275 HPA:HPA049250 MIM:603914
neXtProt:NX_O00303 PharmGKB:PA162384806 HOVERGEN:HBG107843
InParanoid:O00303 OrthoDB:EOG44XJHN PhylomeDB:O00303
GenomeRNAi:8665 NextBio:32503 ArrayExpress:O00303 Bgee:O00303
CleanEx:HS_EIF3F Genevestigator:O00303 GermOnline:ENSG00000175390
Uniprot:O00303
Length = 357
Score = 198 (74.8 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 56/227 (24%), Positives = 114/227 (50%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
SVP E + + + D + ++MY + K+++ E ++GWY+TG + E+ + IH+ +
Sbjct: 136 SVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSR 192
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
PNP+ + +D + + KAY V + + +F + + A ++ E IGV+
Sbjct: 193 EAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVD 250
Query: 124 HLLRDVKDTTISTLANEVTGKLTALK---GLDARLRE----IRGYLDLVIDEKLPLNHEI 176
+++ T S N V G + L+ G AR+++ + Y + V+ K+ ++ +
Sbjct: 251 LIMK----TCFSP--NRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTV 304
Query: 177 LYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
L + N +P + + + ND+++V YL++L +S IAL+
Sbjct: 305 GRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALN 351
>UNIPROTKB|A5A6I3 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9598 "Pan troglodytes" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0006413 GO:GO:0008234
GO:GO:0006508 GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 KO:K03249 HAMAP:MF_03005
HOGENOM:HOG000241154 CTD:8665 HOVERGEN:HBG107843 OrthoDB:EOG44XJHN
EMBL:AB222111 RefSeq:NP_001104282.1 UniGene:Ptr.2608
ProteinModelPortal:A5A6I3 STRING:A5A6I3 GeneID:451007
KEGG:ptr:451007 InParanoid:A5A6I3 NextBio:20833681 Uniprot:A5A6I3
Length = 361
Score = 198 (74.8 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 56/227 (24%), Positives = 114/227 (50%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
SVP E + + + D + ++MY + K+++ E ++GWY+TG + E+ + IH+ +
Sbjct: 140 SVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSR 196
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
PNP+ + +D + + KAY V + + +F + + A ++ E IGV+
Sbjct: 197 EAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVD 254
Query: 124 HLLRDVKDTTISTLANEVTGKLTALK---GLDARLRE----IRGYLDLVIDEKLPLNHEI 176
+++ T S N V G + L+ G AR+++ + Y + V+ K+ ++ +
Sbjct: 255 LIMK----TCFSP--NRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTV 308
Query: 177 LYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
L + N +P + + + ND+++V YL++L +S IAL+
Sbjct: 309 GRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALN 355
>UNIPROTKB|Q4R5B8 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9541 "Macaca fascicularis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0006413
GO:GO:0008234 GO:GO:0006508 GO:GO:0003743 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 HAMAP:MF_03005 MEROPS:M67.974
HOVERGEN:HBG107843 OrthoDB:EOG44XJHN EMBL:AB169626
ProteinModelPortal:Q4R5B8 Uniprot:Q4R5B8
Length = 361
Score = 198 (74.8 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 56/227 (24%), Positives = 114/227 (50%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
SVP E + + + D + ++MY + K+++ E ++GWY+TG + E+ + IH+ +
Sbjct: 140 SVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSR 196
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
PNP+ + +D + + KAY V + + +F + + A ++ E IGV+
Sbjct: 197 EAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVD 254
Query: 124 HLLRDVKDTTISTLANEVTGKLTALK---GLDARLRE----IRGYLDLVIDEKLPLNHEI 176
+++ T S N V G + L+ G AR+++ + Y + V+ K+ ++ +
Sbjct: 255 LIMK----TCFSP--NRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTV 308
Query: 177 LYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
L + N +P + + + ND+++V YL++L +S IAL+
Sbjct: 309 GRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALN 355
>UNIPROTKB|A7TX81 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180 KO:K12179
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
EMBL:EF468513 RefSeq:NP_001098769.1 UniGene:Ssc.8359
ProteinModelPortal:A7TX81 GeneID:100125954 KEGG:ssc:100125954
Uniprot:A7TX81
Length = 323
Score = 196 (74.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 49/202 (24%), Positives = 100/202 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K
Sbjct: 96 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 155
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + ++ +F + +A E E IGV+H+ R + ST
Sbjct: 156 HTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 212
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ ++P NHEIL + + LP L+ +
Sbjct: 213 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 272
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 273 TDFYDQCNDVGLMAYLGTITKT 294
>UNIPROTKB|F1MG10 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0010388 "cullin deneddylation"
evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0008180
GO:GO:0010388 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
IPI:IPI00867272 UniGene:Bt.52796 GeneTree:ENSGT00530000063075
EMBL:DAAA02058286 PRIDE:F1MG10 Ensembl:ENSBTAT00000003725
Uniprot:F1MG10
Length = 324
Score = 196 (74.1 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 49/202 (24%), Positives = 100/202 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K
Sbjct: 97 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 156
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + ++ +F + +A E E IGV+H+ R + ST
Sbjct: 157 HTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 213
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ ++P NHEIL + + LP L+ +
Sbjct: 214 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 273
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 274 TDFYDQCNDVGLMAYLGTITKT 295
>MGI|MGI:1349439 [details] [associations]
symbol:Cops6 "COP9 (constitutive photomorphogenic) homolog,
subunit 6 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
MGI:MGI:1349439 GO:GO:0005737 GO:GO:0008180 eggNOG:COG1310
GO:GO:0010388 HOGENOM:HOG000253002 KO:K12179 OMA:IGKQKGR
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:AF071315 EMBL:BC004664
EMBL:BC014286 IPI:IPI00131873 RefSeq:NP_036132.1 UniGene:Mm.3981
ProteinModelPortal:O88545 SMR:O88545 STRING:O88545
PhosphoSite:O88545 PaxDb:O88545 PRIDE:O88545
Ensembl:ENSMUST00000019638 GeneID:26893 KEGG:mmu:26893
InParanoid:O88545 NextBio:304723 Bgee:O88545 Genevestigator:O88545
GermOnline:ENSMUSG00000019494 Uniprot:O88545
Length = 324
Score = 196 (74.1 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 49/202 (24%), Positives = 100/202 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K
Sbjct: 97 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 156
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + ++ +F + +A E E IGV+H+ R + ST
Sbjct: 157 HTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 213
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ ++P NHEIL + + LP L+ +
Sbjct: 214 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 273
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 274 TDFYDQCNDVGLMAYLGTITKT 295
>UNIPROTKB|E7EM64 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005634 InterPro:IPR024969
Pfam:PF13012 HGNC:HGNC:21749 ChiTaRS:COPS6 EMBL:AC073842
IPI:IPI00924791 ProteinModelPortal:E7EM64 SMR:E7EM64
Ensembl:ENST00000418625 ArrayExpress:E7EM64 Bgee:E7EM64
Uniprot:E7EM64
Length = 326
Score = 196 (74.1 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 49/202 (24%), Positives = 100/202 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K
Sbjct: 99 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 158
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + ++ +F + +A E E IGV+H+ R + ST
Sbjct: 159 HTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 215
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ ++P NHEIL + + LP L+ +
Sbjct: 216 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 275
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 276 TDFYDQCNDVGLMAYLGTITKT 297
>UNIPROTKB|Q7L5N1 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0008180 "signalosome"
evidence=IDA] [GO:0010388 "cullin deneddylation" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005737 GO:GO:0019048 EMBL:CH236956 EMBL:CH471091
GO:GO:0008180 eggNOG:COG1310 GO:GO:0010388 HOGENOM:HOG000253002
KO:K12179 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:BC002520
EMBL:U70735 IPI:IPI00163230 RefSeq:NP_006824.2 UniGene:Hs.15591
ProteinModelPortal:Q7L5N1 SMR:Q7L5N1 DIP:DIP-32655N IntAct:Q7L5N1
MINT:MINT-5005311 STRING:Q7L5N1 PhosphoSite:Q7L5N1 DMDM:55976470
PaxDb:Q7L5N1 PeptideAtlas:Q7L5N1 PRIDE:Q7L5N1 DNASU:10980
Ensembl:ENST00000303904 GeneID:10980 KEGG:hsa:10980 UCSC:uc003usu.3
GeneCards:GC07P099686 HGNC:HGNC:21749 HPA:HPA044315 MIM:614729
neXtProt:NX_Q7L5N1 PharmGKB:PA134919933 InParanoid:Q7L5N1
PhylomeDB:Q7L5N1 ChiTaRS:COPS6 GenomeRNAi:10980 NextBio:41718
ArrayExpress:Q7L5N1 Bgee:Q7L5N1 CleanEx:HS_COPS6
Genevestigator:Q7L5N1 GermOnline:ENSG00000168090 Uniprot:Q7L5N1
Length = 327
Score = 196 (74.1 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 49/202 (24%), Positives = 100/202 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K
Sbjct: 100 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 159
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + ++ +F + +A E E IGV+H+ R + ST
Sbjct: 160 HTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 216
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ ++P NHEIL + + LP L+ +
Sbjct: 217 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 276
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 277 TDFYDQCNDVGLMAYLGTITKT 298
>UNIPROTKB|B3KSH1 [details] [associations]
symbol:EIF3F "HCG1784554, isoform CRA_a" species:9606 "Homo
sapiens" [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:CH471064 GO:GO:0003743 InterPro:IPR024969 Pfam:PF13012
OMA:HPVVLFQ HOGENOM:HOG000241154 UniGene:Hs.516023 HGNC:HGNC:3275
HOVERGEN:HBG107843 EMBL:AC044810 EMBL:AC116456 EMBL:AK093511
IPI:IPI00654777 SMR:B3KSH1 IntAct:B3KSH1 STRING:B3KSH1
Ensembl:ENST00000537635 Uniprot:B3KSH1
Length = 372
Score = 198 (74.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 56/227 (24%), Positives = 114/227 (50%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
SVP E + + + D + ++MY + K+++ E ++GWY+TG + E+ + IH+ +
Sbjct: 151 SVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSR 207
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
PNP+ + +D + + KAY V + + +F + + A ++ E IGV+
Sbjct: 208 EAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVD 265
Query: 124 HLLRDVKDTTISTLANEVTGKLTALK---GLDARLRE----IRGYLDLVIDEKLPLNHEI 176
+++ T S N V G + L+ G AR+++ + Y + V+ K+ ++ +
Sbjct: 266 LIMK----TCFSP--NRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTV 319
Query: 177 LYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
L + N +P + + + ND+++V YL++L +S IAL+
Sbjct: 320 GRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALN 366
>UNIPROTKB|A6QQ21 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180
eggNOG:COG1310 HOGENOM:HOG000253002 KO:K12179 InterPro:IPR024969
Pfam:PF13012 EMBL:BC149601 IPI:IPI00867272 RefSeq:NP_001095433.1
UniGene:Bt.52796 ProteinModelPortal:A6QQ21 STRING:A6QQ21
PRIDE:A6QQ21 GeneID:512756 KEGG:bta:512756 CTD:10980
HOVERGEN:HBG107770 InParanoid:A6QQ21 OrthoDB:EOG4JDH76
NextBio:20870547 Uniprot:A6QQ21
Length = 324
Score = 195 (73.7 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 49/202 (24%), Positives = 100/202 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K
Sbjct: 97 IDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 156
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + ++ +F + +A E E IGV+H+ R + ST
Sbjct: 157 HTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 213
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ ++P NHEIL + + LP L+ +
Sbjct: 214 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 273
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 274 TDFYDQCNDVGLMAYLGTITKT 295
>RGD|1309919 [details] [associations]
symbol:Cops6 "COP9 signalosome subunit 6" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0008180
"signalosome" evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 RGD:1309919
GO:GO:0008180 GO:GO:0010388 KO:K12179 InterPro:IPR024969
Pfam:PF13012 CTD:10980 OrthoDB:EOG4JDH76
GeneTree:ENSGT00530000063075 EMBL:CH474107 IPI:IPI00870712
RefSeq:NP_001100599.1 UniGene:Rn.35643 Ensembl:ENSRNOT00000001820
GeneID:304343 KEGG:rno:304343 UCSC:RGD:1309919 NextBio:652918
Uniprot:D3ZI16
Length = 344
Score = 196 (74.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 49/202 (24%), Positives = 100/202 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
+D Y+ + FK++ + +GWY+TG +D+ +H+ + +P+ + ++ K
Sbjct: 117 IDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK 176
Query: 79 ELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IST 136
+P + E V + ++ +F + +A E E IGV+H+ R + ST
Sbjct: 177 HTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 233
Query: 137 LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196
+A + + +A+K L +R++ I Y+ ++P NHEIL + + LP L+ +
Sbjct: 234 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 293
Query: 197 KAFSVKTNDMMLVIYLSSLIRS 218
F + ND+ L+ YL ++ ++
Sbjct: 294 TDFYDQCNDVGLMAYLGTITKT 315
>TAIR|locus:2177601 [details] [associations]
symbol:CSN6A "AT5G56280" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein
catabolic process" evidence=TAS] [GO:0008180 "signalosome"
evidence=TAS;IPI] [GO:0009640 "photomorphogenesis"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0010387 "signalosome assembly" evidence=IMP]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA] [GO:0043248 "proteasome assembly" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006511
GO:GO:0009585 GO:GO:0008180 eggNOG:COG1310 GO:GO:0010387
EMBL:AY048692 EMBL:AF395063 EMBL:AB026656 EMBL:BT004034
IPI:IPI00519357 RefSeq:NP_568839.1 UniGene:At.20191
ProteinModelPortal:Q8W206 SMR:Q8W206 IntAct:Q8W206 STRING:Q8W206
PaxDb:Q8W206 PRIDE:Q8W206 EnsemblPlants:AT5G56280.1 GeneID:835727
KEGG:ath:AT5G56280 TAIR:At5g56280 HOGENOM:HOG000253002
InParanoid:Q8W206 KO:K12179 OMA:IGKQKGR PhylomeDB:Q8W206
ProtClustDB:CLSN2689622 Genevestigator:Q8W206 GermOnline:AT5G56280
InterPro:IPR024969 Pfam:PF13012 Uniprot:Q8W206
Length = 317
Score = 194 (73.4 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 54/210 (25%), Positives = 102/210 (48%)
Query: 13 DPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVI 72
DP LD ++ E ++K++ +++GWYSTG E+D+ IH+ + +PV V+
Sbjct: 82 DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMDINESPVYVL 141
Query: 73 ID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRD 128
++ + + +P Y V + Q +F H I E E I V+H+ L+
Sbjct: 142 LNPAINHTQKDLPVTIYESELHVIDGIPQL---IFAHTSYTIETVEAERISVDHVAHLKP 198
Query: 129 VKDTTIST-LANEVTGKLTALKGLDARLREIRGYLDLVIDEK--LPLNHEILYHLQDVFN 185
+ +T LA +TG +A+K L++R+R + Y +L +K ++ +L + +
Sbjct: 199 SDGGSAATQLAAHLTGIHSAIKMLNSRIRVL--YQNLAAMQKGDKSCDNSVLRQVSSLLR 256
Query: 186 LLPNLNVAELIKAFSVKTNDMMLVIYLSSL 215
LP + F ++ ND +L+ YL+ +
Sbjct: 257 RLPAMESERFQDNFLMEYNDKLLITYLAMI 286
>MGI|MGI:1913335 [details] [associations]
symbol:Eif3f "eukaryotic translation initiation factor 3,
subunit F" species:10090 "Mus musculus" [GO:0003743 "translation
initiation factor activity" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=ISO;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=ISO;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008234
"cysteine-type peptidase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 MGI:MGI:1913335 GO:GO:0006413 GO:GO:0008234
GO:GO:0006508 EMBL:CH466531 GO:GO:0003743 eggNOG:COG1310
GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005
HOGENOM:HOG000241154 MEROPS:M67.974 CTD:8665 HOVERGEN:HBG107843
OrthoDB:EOG44XJHN EMBL:AK002778 EMBL:BC083190 IPI:IPI00120914
RefSeq:NP_079620.2 UniGene:Mm.182962 ProteinModelPortal:Q9DCH4
SMR:Q9DCH4 DIP:DIP-42766N IntAct:Q9DCH4 MINT:MINT-1899046
STRING:Q9DCH4 PhosphoSite:Q9DCH4 PaxDb:Q9DCH4 PRIDE:Q9DCH4
Ensembl:ENSMUST00000033342 GeneID:66085 KEGG:mmu:66085
InParanoid:Q5XJV3 ChiTaRS:EIF3F NextBio:320584 Bgee:Q9DCH4
Genevestigator:Q9DCH4 GermOnline:ENSMUSG00000031029 Uniprot:Q9DCH4
Length = 361
Score = 196 (74.1 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 56/227 (24%), Positives = 114/227 (50%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
SVP E + + + D + ++MY + K+++ E ++GWY+TG + E+ + IH+ +
Sbjct: 140 SVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSR 196
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
PNP+ + +D + + KAY V + + +F + + A ++ E IGV+
Sbjct: 197 EAPNPIHLTVDTGLQHGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVD 254
Query: 124 HLLRDVKDTTISTLANEVTGKLTALK---GLDARLRE----IRGYLDLVIDEKLPLNHEI 176
+++ T S N V G + L+ G AR+++ + Y + V+ K+ ++ +
Sbjct: 255 LIMK----TCFSP--NRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTV 308
Query: 177 LYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
L + N +P + + + ND+++V YL++L +S IAL+
Sbjct: 309 GRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALN 355
>UNIPROTKB|E1BLZ8 [details] [associations]
symbol:EIF3F "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005852 "eukaryotic translation initiation factor 3
complex" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0003743 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 EMBL:DAAA02040761
IPI:IPI00837929 Ensembl:ENSBTAT00000049219 OMA:HHETMYE
Uniprot:E1BLZ8
Length = 384
Score = 195 (73.7 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 55/227 (24%), Positives = 113/227 (49%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
SVP E + + + D + ++MY + K+++ E ++GWY+TG + E+ + IH+ +
Sbjct: 163 SVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSR 219
Query: 64 YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVE 123
PNP+ + +D + + KAY V + + +F + + ++ E IGV+
Sbjct: 220 EAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYTYYDTERIGVD 277
Query: 124 HLLRDVKDTTISTLANEVTGKLTALK---GLDARLRE----IRGYLDLVIDEKLPLNHEI 176
+++ T S N V G + L+ G AR+++ + Y + V+ K+ ++ +
Sbjct: 278 LIMK----TCFSP--NRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTV 331
Query: 177 LYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
L + N +P + + + ND+++V YL++L +S IAL+
Sbjct: 332 GRFLMSLVNQVPKIVPEDFETMLNSNINDLLMVTYLANLTQSQIALN 378
>UNIPROTKB|B4DEW9 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9606 "Homo sapiens" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0003743
GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012 UniGene:Hs.516023
HGNC:HGNC:3275 HOVERGEN:HBG107843 EMBL:AC044810 EMBL:AC116456
EMBL:AK293826 IPI:IPI01013021 ProteinModelPortal:B4DEW9 SMR:B4DEW9
STRING:B4DEW9 PRIDE:B4DEW9 Ensembl:ENST00000449102
ArrayExpress:B4DEW9 Bgee:B4DEW9 Uniprot:B4DEW9
Length = 208
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 51/208 (24%), Positives = 106/208 (50%)
Query: 23 YHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGI 82
+ ++MY + K+++ E ++GWY+TG + E+ + IH+ + PNP+ + +D + +
Sbjct: 3 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 62
Query: 83 PTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVT 142
KAY V + + +F + + A ++ E IGV+ +++ T S N V
Sbjct: 63 SIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK----TCFSP--NRVI 114
Query: 143 GKLTALK---GLDARLRE----IRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEL 195
G + L+ G AR+++ + Y + V+ K+ ++ + L + N +P + +
Sbjct: 115 GLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDF 174
Query: 196 IKAFSVKTNDMMLVIYLSSLIRSVIALH 223
+ ND+++V YL++L +S IAL+
Sbjct: 175 ETMLNSNINDLLMVTYLANLTQSQIALN 202
>FB|FBgn0037270 [details] [associations]
symbol:CG9769 species:7227 "Drosophila melanogaster"
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006413 "translational initiation" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 EMBL:AE014297
GO:GO:0035071 GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
EMBL:AY118972 RefSeq:NP_649489.1 UniGene:Dm.11029
ProteinModelPortal:Q9VN50 SMR:Q9VN50 IntAct:Q9VN50 MINT:MINT-891663
STRING:Q9VN50 MEROPS:M67.975 PaxDb:Q9VN50 PRIDE:Q9VN50
EnsemblMetazoa:FBtr0078892 GeneID:40587 KEGG:dme:Dmel_CG9769
UCSC:CG9769-RA FlyBase:FBgn0037270 InParanoid:Q9VN50 KO:K03249
OMA:HPVVLFQ OrthoDB:EOG43TXBB PhylomeDB:Q9VN50 ChiTaRS:CG9769
GenomeRNAi:40587 NextBio:819523 Bgee:Q9VN50 HAMAP:MF_03005
Uniprot:Q9VN50
Length = 280
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 58/229 (25%), Positives = 116/229 (50%)
Query: 5 VPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY 64
VP +E D + +Y MY + +++N+ E VVGW++TG + + IH+ +
Sbjct: 53 VPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARE 109
Query: 65 VPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGV 122
NPV + +D +Q +G+ +AY ++ KS +F +P E+ ++E E G+
Sbjct: 110 CNNPVHLTVDTSLQGGRMGL--RAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGL 165
Query: 123 EHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNH 174
+ L + V + T+ + + +++ T L+ L L I Y+D VI K+ ++
Sbjct: 166 KLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDN 222
Query: 175 EILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223
+ L D+ + +P++ + + F+ +++LVI LS LI++ + L+
Sbjct: 223 AVGRQLLDLIHSVPHMTHEQFTQMFNANVRNLLLVITLSQLIKTQLQLN 271
>ASPGD|ASPL0000055955 [details] [associations]
symbol:AN10182 species:162425 "Emericella nidulans"
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016282
"eukaryotic 43S preinitiation complex" evidence=IEA] [GO:0071541
"eukaryotic translation initiation factor 3 complex, eIF3m"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0071540
"eukaryotic translation initiation factor 3 complex, eIF3e"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 EMBL:BN001308 GO:GO:0003743 InterPro:IPR024969
Pfam:PF13012 OMA:HPVVLFQ HOGENOM:HOG000241154
EnsemblFungi:CADANIAT00001258 Uniprot:C8VRX6
Length = 345
Score = 176 (67.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYV----PNPVL-VII 73
+D Y + M ++ + N +E +VGWY+T +L I + P+P + + +
Sbjct: 88 VDMEYQKQMLALHLKANPREVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTV 147
Query: 74 DVQPKELGIPTKAYYD--VEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLL--RDV 129
+P + I T+AY V E A + F+ VP EI E E+ G+E + RD
Sbjct: 148 STEPGK-DIETRAYISAPVGVTAERAADSA--AFIPVPHEIRYGEAEKSGLEAIAAARDS 204
Query: 130 KDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPN 189
++ + S L ++ A++ + + + Y++ VIDE+ P + + L + L P
Sbjct: 205 EERSTS-LFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPK 263
Query: 190 LNVAELIKAFSVKTNDMMLVIYLSSLIRSVIAL 222
+ A++ + F+ D+++V YL++ IR+ + L
Sbjct: 264 VEPADIERDFNNHIQDVLVVSYLANTIRTQMEL 296
>FB|FBgn0028837 [details] [associations]
symbol:CSN6 "COP9 complex homolog subunit 6" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=IMP] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 EMBL:AE014297 GO:GO:0007275 GO:GO:0005737
GO:GO:0007095 GO:GO:0050821 GO:GO:0048477 GO:GO:0046331
GO:GO:0008180 eggNOG:COG1310 GO:GO:0000338 GO:GO:0019781 KO:K12179
OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 EMBL:AY070607 RefSeq:NP_524451.1
UniGene:Dm.2377 PDB:4E0Q PDBsum:4E0Q ProteinModelPortal:Q9VCY3
SMR:Q9VCY3 IntAct:Q9VCY3 MINT:MINT-991251 STRING:Q9VCY3
MEROPS:M67.972 PaxDb:Q9VCY3 PRIDE:Q9VCY3 EnsemblMetazoa:FBtr0084265
GeneID:42661 KEGG:dme:Dmel_CG6932 CTD:42661 FlyBase:FBgn0028837
InParanoid:Q9VCY3 OrthoDB:EOG4KSN1G PhylomeDB:Q9VCY3
GenomeRNAi:42661 NextBio:829940 Bgee:Q9VCY3 GermOnline:CG6932
Uniprot:Q9VCY3
Length = 341
Score = 174 (66.3 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 47/208 (22%), Positives = 102/208 (49%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPK 78
++ +Y+ +K++ + +GWY+TG +D+ I + P+++ ++ +
Sbjct: 113 INKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSR 172
Query: 79 ELG-IPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--IS 135
+ +P K + + ++ + ++ +FV + +A E E IGV+H+ R + + S
Sbjct: 173 SVDHLPLKLFESLIDLVDG---EATMLFVPLTYTLATEEAERIGVDHVARMTSNESGEKS 229
Query: 136 TLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEL 195
+A + + +A+K L+ R++ + Y+ V KL N EIL + + LP + V
Sbjct: 230 VVAEHLVAQDSAIKMLNTRIKIVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAF 289
Query: 196 IKAFSVKTNDMMLVIYLSSLIRSVIALH 223
+ F + ND+ L+ YL +L + +H
Sbjct: 290 QEEFYTQCNDVGLISYLGTLTKGCNDMH 317
>POMBASE|SPBC4C3.07 [details] [associations]
symbol:SPBC4C3.07 "translation initiation factor eIF3f"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:0006413
"translational initiation" evidence=IMP] [GO:0016282 "eukaryotic
43S preinitiation complex" evidence=IDA] [GO:0071540 "eukaryotic
translation initiation factor 3 complex, eIF3e" evidence=IDA]
[GO:0071541 "eukaryotic translation initiation factor 3 complex,
eIF3m" evidence=IDA] [GO:0003743 "translation initiation factor
activity" evidence=IC] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 PomBase:SPBC4C3.07 GO:GO:0005829 GO:GO:0005634
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003743
eggNOG:COG1310 GO:GO:0004843 GO:GO:0002183 InterPro:IPR024969
Pfam:PF13012 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005 GO:GO:0016282
GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000241154 OrthoDB:EOG4RZ28G
PIR:T40490 RefSeq:NP_596298.1 ProteinModelPortal:O43060
STRING:O43060 EnsemblFungi:SPBC4C3.07.1 GeneID:2540868
KEGG:spo:SPBC4C3.07 NextBio:20801984 Uniprot:O43060
Length = 302
Score = 147 (56.8 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 56/231 (24%), Positives = 99/231 (42%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VP E + + + YH +MY + + N +E VVGWY+T P L I L+ +
Sbjct: 69 AVPHNESSEQVEV---EMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYAS 125
Query: 64 YV----------PNPVL---VIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPS 110
P+P + V DV L I T V + E FV P
Sbjct: 126 PAEPGTAPLGTYPHPCVHLTVNTDVS-SPLAIKTYVSSPVG-ITERLADSC--AFVPTPF 181
Query: 111 EIAAHEVEEIGVEHLLRDVKDTT-ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEK 169
I E G++ + D + +++L ++ + L + + + Y+ VID
Sbjct: 182 TIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGS 241
Query: 170 LPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVI 220
P N + +L F+L+P + + K FS D+++V+YL++ +R+ +
Sbjct: 242 SPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLANTLRTQV 292
>UNIPROTKB|A4R0E5 [details] [associations]
symbol:MGG_10653 "Eukaryotic translation initiation factor
3 subunit F" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005737 GO:GO:0003743 EMBL:CM001231 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03249 HAMAP:MF_03005
RefSeq:XP_003710082.1 ProteinModelPortal:A4R0E5 STRING:A4R0E5
EnsemblFungi:MGG_10653T0 GeneID:2682266 KEGG:mgr:MGG_10653
OrthoDB:EOG4RZ28G Uniprot:A4R0E5
Length = 370
Score = 123 (48.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 45/242 (18%), Positives = 97/242 (40%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
++P E++ + D Y ++M ++ + + +E ++GWY+T +L I F +
Sbjct: 80 AIPHTENEDQVEV---DVEYQKNMLALTLKASPRESLLGWYTTSHELNSFSALIQNFFAS 136
Query: 64 ----YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIA-AHEVE 118
P+P + + I + Y F+ VP +E +
Sbjct: 137 PETGTFPHPAVHLTMSTDPGADIEPRCYISAPAAVSPDRAAESCFFIQVPHRTPPTNESD 196
Query: 119 EIGVEHLLRDVKDTT-ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEIL 177
+E + D + + ++V +L+ L Y+ V+DE+ +H +
Sbjct: 197 RAALEAIAAGKDDEARTAPVLSDVEALARSLEQTIDMLDRTSEYVGAVLDEEREPSHALG 256
Query: 178 YHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXXEHEK 237
+L + +L P ++ + F+ D+++V YL++ IR+ + L + EK
Sbjct: 257 QYLMNNLSLAPKVDSVSIEHDFNNHIQDVLMVSYLTNTIRTQVDLAQRLALANLTDKDEK 316
Query: 238 TE 239
E
Sbjct: 317 KE 318
>FB|FBgn0033069 [details] [associations]
symbol:CG8335 species:7227 "Drosophila melanogaster"
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 EMBL:AE013599
GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 HAMAP:MF_03005 RefSeq:NP_610210.2
ProteinModelPortal:A1Z6K7 SMR:A1Z6K7 IntAct:A1Z6K7 STRING:A1Z6K7
GeneID:35547 KEGG:dme:Dmel_CG8335 UCSC:CG8335-RA
FlyBase:FBgn0033069 InParanoid:A1Z6K7 OMA:ITLSTMI OrthoDB:EOG41G1M1
GenomeRNAi:35547 NextBio:793971 Bgee:A1Z6K7 Uniprot:A1Z6K7
Length = 285
Score = 112 (44.5 bits), Expect = 0.00036, P = 0.00036
Identities = 46/224 (20%), Positives = 94/224 (41%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
+VP +E ++ I LD Y + + E V+GW+ TG + + IH +
Sbjct: 55 TVPHKEHSENKRI-DLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVR 113
Query: 64 YV--PNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIG 121
P+ +++D K + T+ Y VE T+ +F VP EI+ + +
Sbjct: 114 ECCEGQPLHLLVDAALKNQRLSTRLYCAVEMGVPGGTKGL--MFSLVPLEISNENSDLVA 171
Query: 122 ---VEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILY 178
+E + + E+ + A + + RL + Y++ V+ K ++ +
Sbjct: 172 LRCIEKQSQQQASKQMERFVPELAQVVDATRDMQHRLDLVLRYINDVLARKKKPDNVVGR 231
Query: 179 HLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIAL 222
L +P L+ + F+ DM++ I LS++I++ + +
Sbjct: 232 SLYAALTAVPLLDSDKFRVMFNTNLRDMLMAITLSTMIKTQLEI 275
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 252 242 0.00096 113 3 11 22 0.45 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 577 (61 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.20u 0.10s 24.30t Elapsed: 00:00:01
Total cpu time: 24.21u 0.10s 24.31t Elapsed: 00:00:01
Start: Sat May 11 15:46:11 2013 End: Sat May 11 15:46:12 2013