BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036425
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 338
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/237 (49%), Positives = 168/237 (70%), Gaps = 19/237 (8%)
Query: 4 SVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN 63
++PFEED+K+ +WFLDHNY E+M M K+INAKE ++GWY +GPKLR +DL I++LF
Sbjct: 53 ALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKK 112
Query: 64 YVPN-PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGV 122
Y N P+L+I+DV+ + +G+PT AY +E+VK++ T ++K F+H+P I A E EEIGV
Sbjct: 113 YTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTS-TEKTFLHLPCTIEAEEAEEIGV 171
Query: 123 EHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQD 182
EHLLRDV+D L+ +T +L +LKGL ++L+++ YLD VI+++LP+NH IL LQD
Sbjct: 172 EHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQD 231
Query: 183 VFNLLPNLNVAE-----------------LIKAFSVKTNDMMLVIYLSSLIRSVIAL 222
VFNLLPNL + L KA +VKTND ++VIY+S+L+RS+IA
Sbjct: 232 VFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAF 288
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/134 (62%), Positives = 106/134 (79%), Gaps = 1/134 (0%)
Query: 3 ISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFH 62
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L
Sbjct: 55 FAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMK 114
Query: 63 NYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGV 122
Y PN VLVIIDV+PK+LG+PT+AY VEEV ++ T S K F HV SEI A E EE+GV
Sbjct: 115 RYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGV 173
Query: 123 EHLLRDVKDTTIST 136
EHLLRD+KDTT+ T
Sbjct: 174 EHLLRDIKDTTVGT 187
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 150 bits (378), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 3 ISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFH 62
+VPF+EDDKD +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L
Sbjct: 55 FAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMK 114
Query: 63 NYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGV 122
Y PN VLVIIDV+PK+LG+PT+AY VEEV ++ T S K F HV SEI A E EE+GV
Sbjct: 115 RYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGV 173
Query: 123 EHLLR 127
EHLLR
Sbjct: 174 EHLLR 178
>pdb|1NIG|A Chain A, 2.0 A Structure Of Protein Of Unknown Function From
Thermoplasma Acidophilum
Length = 152
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 20 DHNYHESMYSMFKRINAKEHVVGW-YSTGPKLREND--LDIHQLFHNYVPNPVLVIIDVQ 76
DH Y + I A E +G S G K+RE LDI +N + +P + D Q
Sbjct: 17 DHVY----FKFRSEIEAAEAYLGLAISEGIKVRETREILDIIDTVYNSLSDPESKLNDFQ 72
Query: 77 PKELGIPTKAYYDVEEVKENATQKSQKVFV 106
K L + +YD++E N + S +F+
Sbjct: 73 EKRLNFTEEDWYDIKEKANNGNRWSLYMFL 102
>pdb|3ENP|A Chain A, Crystal Structure Of Human Cgi121
pdb|3ENP|B Chain B, Crystal Structure Of Human Cgi121
Length = 177
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 183 VFNLLPNLNVAELIKAFSVKTNDM-MLVIYL 212
+FNL PN N++E +K F + ND +L++Y+
Sbjct: 82 IFNLSPNNNISEALKKFGISANDTSILIVYI 112
>pdb|3MBW|B Chain B, Crystal Structure Of The Human Ephrin A2 Lbd And Crd
Domains In Complex With Ephrin A1
Length = 181
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 25 ESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYV 65
E++Y A H V W S+ PK R D IH ++YV
Sbjct: 17 ENLYFQGAMDAADRHTVFWNSSNPKFRNEDYTIHVQLNDYV 57
>pdb|3CZU|B Chain B, Crystal Structure Of The Human Ephrin A2- Ephrin A1
Complex
Length = 182
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 25 ESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYV 65
E++Y A H V W S+ PK R D IH ++YV
Sbjct: 18 ENLYFQGAMDAADRHTVFWNSSNPKFRNEDYTIHVQLNDYV 58
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 306
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 19 LDHNYHESMYSMFKRINAKEHVVGWYSTGPK----LRENDLDIHQLFHNYVPNPVLVIID 74
+D + M M K+ + VVGWY + P L D++ + F V V++D
Sbjct: 83 VDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVD 142
>pdb|3HEI|B Chain B, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|D Chain D, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|F Chain F, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|H Chain H, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|J Chain J, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|L Chain L, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|N Chain N, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
pdb|3HEI|P Chain P, Ligand Recognition By A-Class Eph Receptors: Crystal
Structures Of The Epha2 Ligand-Binding Domain And The
Epha2EPHRIN-A1 Complex
Length = 132
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 36 AKEHVVGWYSTGPKLRENDLDIHQLFHNYV 65
A H V W S+ PK R D IH ++YV
Sbjct: 1 ADRHTVFWNSSNPKFRNEDYTIHVQLNDYV 30
>pdb|3FJ2|A Chain A, Crystal Structure Of A Monooxygenase-Like Protein
(Lin2316) From Listeria Innocua At 1.85 A Resolution
Length = 186
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 99 QKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREI 158
Q +KVF+ +E ++ E + + +++ + S L E TG+ +G + R+ +
Sbjct: 18 QGXKKVFITTGTEHYLRQLXENYIGENVTLLQNFSQSLLYQESTGEKLFQEGKEYRVLQS 77
Query: 159 RGYL---DLVI-------DEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMML 208
G L +V+ DE++P+ + H F+ P L +L KA TN ++
Sbjct: 78 SGSLKGFGIVVFEYIQLRDEEIPIFLQXYQHASLHFSETPGLQSTKLTKA--XNTNQFLI 135
Query: 209 VIYLSS 214
V + S
Sbjct: 136 VSFWDS 141
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 73 IDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIG 121
I V L P KA ++ V A +S+ V++ +P + EVE +G
Sbjct: 148 ITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRNMVNAEVEPVG 196
>pdb|1QAX|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Hmg-Coa And Nad+
pdb|1QAX|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Hmg-Coa And Nad+
pdb|1QAY|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Mevalonate And Nad+
pdb|1QAY|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Mevalonate And Nad+
pdb|1R31|A Chain A, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
With Hmg-Coa
pdb|1R31|B Chain B, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
With Hmg-Coa
pdb|1R7I|A Chain A, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
2.2 Angstroms Resolution.
pdb|1R7I|B Chain B, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
2.2 Angstroms Resolution.
pdb|1T02|A Chain A, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
Reductase
pdb|1T02|B Chain B, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
Reductase
Length = 428
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 122 VEHLLRDVKDT----TISTLANEVTGKLTALKGLDARLREIRGYLDL 164
V HL+ DV+D T++T+A V + A+ G RLR + DL
Sbjct: 174 VAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADL 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,379,377
Number of Sequences: 62578
Number of extensions: 310494
Number of successful extensions: 854
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 21
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)