Query 036425
Match_columns 252
No_of_seqs 120 out of 537
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 21:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 1.1E-59 3.9E-64 428.9 18.6 234 2-236 51-302 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 1.1E-29 3.9E-34 213.1 15.0 132 2-134 54-185 (187)
3 4e0q_A COP9 signalosome comple 99.9 1.3E-25 4.4E-30 180.4 3.9 87 2-91 53-140 (141)
4 4b4t_V 26S proteasome regulato 99.8 2.5E-20 8.4E-25 167.3 11.3 197 2-207 68-296 (306)
5 3rzv_A STAM-binding protein; u 97.0 0.0017 5.7E-08 54.8 7.1 56 36-95 113-172 (211)
6 2znr_A AMSH-like protease; met 96.9 0.00066 2.2E-08 55.8 4.2 83 2-95 53-139 (178)
7 2kks_A Uncharacterized protein 94.5 0.27 9.3E-06 38.4 9.6 93 3-114 43-137 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 90.5 0.52 1.8E-05 37.0 6.0 83 17-115 57-142 (153)
9 2rh2_A Dihydrofolate reductase 85.9 0.36 1.2E-05 31.0 1.8 12 38-49 24-35 (62)
10 2akf_A Coronin-1A; coiled coil 61.6 17 0.0006 20.3 4.2 29 136-164 3-31 (32)
11 1oi0_A AF2198, hypothetical pr 52.3 16 0.00055 27.1 4.2 49 36-89 61-111 (124)
12 2og4_A PRE-mRNA-splicing facto 49.5 16 0.00056 31.1 4.2 58 36-95 108-170 (254)
13 3sbg_A PRE-mRNA-splicing facto 45.9 8.5 0.00029 36.2 2.0 57 36-94 419-480 (565)
14 2p8r_A PRP8, PRE-mRNA-splicing 42.8 23 0.00077 30.6 4.0 57 36-94 107-172 (273)
15 2xpp_A IWS1, ECU08_0440; trans 26.7 1.1E+02 0.0039 23.5 5.4 43 153-197 61-103 (145)
16 3nfq_A Transcription factor IW 21.6 1.6E+02 0.0054 23.4 5.4 42 153-196 76-117 (170)
17 3tj5_B Metavinculin, SCA-famil 21.1 1.1E+02 0.0038 16.6 3.5 21 144-164 6-26 (27)
18 2p6v_A Transcription initiatio 20.8 1.8E+02 0.0061 21.5 5.1 57 145-206 16-74 (114)
19 1oxz_A ADP-ribosylation factor 20.6 3.3E+02 0.011 21.8 10.0 81 140-232 70-153 (186)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-59 Score=428.86 Aligned_cols=234 Identities=53% Similarity=0.949 Sum_probs=150.5
Q ss_pred eeeecccCCCCCCceeEeCHHHHHHHHHHHhhcCCCCeeEEEEecCCCCCCCcHHHHHHHhccCC-CcEEEEEeCCCCCC
Q 036425 2 VISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKEL 80 (252)
Q Consensus 2 sF~Vp~~e~~~~~~~~~iD~~~~~~m~~l~kkV~p~e~iVGWYstg~~~~~~~~~Ih~~~~~~~~-~PI~L~vD~~~~~~ 80 (252)
||+|||+|+++++++|++|++|+++|+++|++|||++.|||||+||+.++++|+.||++|+++++ +||+|++|+.+.++
T Consensus 51 sF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~ 130 (338)
T 4b4t_U 51 SFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGV 130 (338)
T ss_dssp EEECCEEECSSSTTCEEECHHHHHHHHHHHHHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSS
T ss_pred EEEeccccCCCCCccccccHHHHHHHHHHHhhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCC
Confidence 99999999988888899999999999999999999999999999999999999999999999985 89999999999999
Q ss_pred CCceEEEEeehhhhccccccccceeeeeeeeeeecchhHHHHHHHhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036425 81 GIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRG 160 (252)
Q Consensus 81 ~lpi~~Y~~~~~~~~~~~~~~~~~F~~v~~~i~~~eaEri~vd~l~k~~~~~~~~~l~~~l~~~~~al~~L~~~l~~i~~ 160 (252)
+||+++|++...+.+++. ..+..|+++|++|+++|+|||||+|++|+..+.+.+.+..++.++.+|+++|.+||+.|++
T Consensus 131 ~lpi~aY~s~~~~~~~~~-~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~~~~~~~l~~~l~~~~~al~~L~~~l~~i~~ 209 (338)
T 4b4t_U 131 GLPTDAYVAIEQVKDDGT-STEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVE 209 (338)
T ss_dssp SCSEEEEEEEEECSSCST-TCEEEEEEECEEECSCHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEeehhccCCCc-ccccEEEEeeeEeecCcHHHHHHHHHHhccccCcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887766553 3567899999999999999999999999988777778889999999999999999999999
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHhhCCCCCH-----------------HHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 036425 161 YLDLVIDEKLPLNHEILYHLQDVFNLLPNLNV-----------------AELIKAFSVKTNDMMLVIYLSSLIRSVIALH 223 (252)
Q Consensus 161 Yl~~V~~G~~~~d~~ilR~l~~lv~~lP~~~~-----------------~~f~~~~~~~~~D~lmv~yLs~ltk~~~~l~ 223 (252)
||++|.+|++++|++|||+|+++|+++|.+++ ++|+++|+.+.||+||++|||+|||||.+|+
T Consensus 210 Yl~~V~~g~~~~n~~ilr~l~~~~~~lP~l~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~rs~~al~ 289 (338)
T 4b4t_U 210 YLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFD 289 (338)
T ss_dssp HHHHC---------------------------------------------------------------------------
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhhCCcCCcccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998854 4589999999999999999999999999999
Q ss_pred HHHHhhhhchhhh
Q 036425 224 NLINNKILNKEHE 236 (252)
Q Consensus 224 e~l~~~~~~~~~~ 236 (252)
++++|+++|...+
T Consensus 290 eli~nk~~~~~~~ 302 (338)
T 4b4t_U 290 DLIENKIQNKKIQ 302 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 9999999975443
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.96 E-value=1.1e-29 Score=213.09 Aligned_cols=132 Identities=62% Similarity=1.124 Sum_probs=115.8
Q ss_pred eeeecccCCCCCCceeEeCHHHHHHHHHHHhhcCCCCeeEEEEecCCCCCCCcHHHHHHHhccCCCcEEEEEeCCCCCCC
Q 036425 2 VISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELG 81 (252)
Q Consensus 2 sF~Vp~~e~~~~~~~~~iD~~~~~~m~~l~kkV~p~e~iVGWYstg~~~~~~~~~Ih~~~~~~~~~PI~L~vD~~~~~~~ 81 (252)
||++||.+++.++++|++|.+|+..|+++|++|+|++.|||||++++..+..|..||++|.+++++|++|++|+....++
T Consensus 54 ~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~ 133 (187)
T 2o95_A 54 SFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG 133 (187)
T ss_dssp EEEECEEECSSCTTSEEECHHHHHHHHHHHHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTTC-C
T ss_pred EEEeCCcccCCCcchhhcCHHHHHHHHHHHHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCCCCC
Confidence 89999998876555689999999999999999999999999999999999999999999999999999999999876567
Q ss_pred CceEEEEeehhhhccccccccceeeeeeeeeeecchhHHHHHHHhhhcccCcc
Q 036425 82 IPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTI 134 (252)
Q Consensus 82 lpi~~Y~~~~~~~~~~~~~~~~~F~~v~~~i~~~eaEri~vd~l~k~~~~~~~ 134 (252)
+|+++|++.+.+.+++. .....|.++|++|.++|||||||+|++|++++++.
T Consensus 134 l~i~ay~~~~~~~~~~~-~~~~~F~~ip~~I~~~eaE~i~v~~l~~~~~~~~~ 185 (187)
T 2o95_A 134 LPTEAYISVEEVHDDGT-PTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTV 185 (187)
T ss_dssp CSEEEEEEEEECC-----CCEEEEEEEEEEECCCHHHHHHHHHHHHHCCSCCC
T ss_pred cCeEEEEEechhcCCCC-cccCEEEEeeEEEecCcHHHHHHHHHHhcCCCccc
Confidence 99999999887665432 13578999999999999999999999999887654
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.91 E-value=1.3e-25 Score=180.41 Aligned_cols=87 Identities=14% Similarity=0.349 Sum_probs=73.7
Q ss_pred eeeecccCCCCCCceeEeCHHHHHHHHHHHhhcCCCCeeEEEEecCCCCCCCcHHHHHHHhccCCCcEEEEEeCCCCC-C
Q 036425 2 VISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKE-L 80 (252)
Q Consensus 2 sF~Vp~~e~~~~~~~~~iD~~~~~~m~~l~kkV~p~e~iVGWYstg~~~~~~~~~Ih~~~~~~~~~PI~L~vD~~~~~-~ 80 (252)
||++|+++++++ +++|.+|+++|+++||+|||++.+||||+||+.+++.|+.||++|++++++||+|++||..+. +
T Consensus 53 sF~~p~~~~~~~---~~~d~~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g 129 (141)
T 4e0q_A 53 SFELKTDVIGDE---TVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVD 129 (141)
T ss_dssp EEECCEEEETTE---EEECHHHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCCCT
T ss_pred EEEecccCCCCc---eeecHHHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccCCC
Confidence 899999988654 799999999999999999999999999999999999999999999999999999999999875 5
Q ss_pred CCceEEEEeeh
Q 036425 81 GIPTKAYYDVE 91 (252)
Q Consensus 81 ~lpi~~Y~~~~ 91 (252)
+||++||++..
T Consensus 130 ~Lp~~ay~sv~ 140 (141)
T 4e0q_A 130 HLPLKLFESLI 140 (141)
T ss_dssp THHHHHHCC--
T ss_pred eEEEEEEEEEc
Confidence 79999999863
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.5e-20 Score=167.33 Aligned_cols=197 Identities=13% Similarity=0.183 Sum_probs=146.7
Q ss_pred eeeecccCCCCCCceeEeCHHHHHHHHHHHhhcCCCCeeEEEEecCCCC----CCCcHHHHHHHhccCCCcEEEEEeCCC
Q 036425 2 VISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKL----RENDLDIHQLFHNYVPNPVLVIIDVQP 77 (252)
Q Consensus 2 sF~Vp~~e~~~~~~~~~iD~~~~~~m~~l~kkV~p~e~iVGWYstg~~~----~~~~~~Ih~~~~~~~~~PI~L~vD~~~ 77 (252)
||++|+.++++. ++++|..|+..|.+++++|++++.+||||++++.. +..|+..|..|...++.||+|++||..
T Consensus 68 ~f~~P~~~~~~~--v~~~d~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~ 145 (306)
T 4b4t_V 68 VFAMPQSGTGVS--VEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQ 145 (306)
T ss_dssp EECCCCEESSSC--EECCCHHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred EEeCCcCCCCCc--hhcCCHHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 899999988654 57899999999999999999999999999998864 445777777788889999999999976
Q ss_pred C-CCCCceEEEEeehhhhcccc----------------------ccccceeeeeeeeeeecchhHHHHHHHhhhcccCcc
Q 036425 78 K-ELGIPTKAYYDVEEVKENAT----------------------QKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTI 134 (252)
Q Consensus 78 ~-~~~lpi~~Y~~~~~~~~~~~----------------------~~~~~~F~~v~~~i~~~eaEri~vd~l~k~~~~~~~ 134 (252)
+ .|+++++||.+.+.+..... ......|.++|+++...+.|+..++.+.+..-.. .
T Consensus 146 t~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~-~ 224 (306)
T 4b4t_V 146 SVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQS-G 224 (306)
T ss_dssp SSSCSSCEEEEECCHHHHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC------
T ss_pred CCCCceeeeEEEecCccccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhccccc-c
Confidence 4 58999999999875421000 0112458999999999999999999998753211 1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhhCCCCCH-----HHHHHHHHhhhchHH
Q 036425 135 STLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNV-----AELIKAFSVKTNDMM 207 (252)
Q Consensus 135 ~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~G~~~~d~~ilR~l~~lv~~lP~~~~-----~~f~~~~~~~~~D~l 207 (252)
-...+.......+.+.+.++++.+.+|.+.|.+|+...+.+++ ...+|++++ +.++..+++++.+.|
T Consensus 225 l~~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~e~~~~~~~l~------~~~vgk~dp~~~l~~~~~~l~~~ni~~~l 296 (306)
T 4b4t_V 225 LKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELK------TRYVGRQDPKKHLSETADETLENNIVSVL 296 (306)
T ss_dssp -----CHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH------HTCSCSSCCSSSSHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCHHHHH------hhccCccChHHHHHHHHHHHHHHHHHHHH
Confidence 2223345566777888999999999999999988766666654 466787776 566777776655444
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=96.98 E-value=0.0017 Score=54.82 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=43.7
Q ss_pred CCCeeEEEEecCCC----CCCCcHHHHHHHhccCCCcEEEEEeCCCCCCCCceEEEEeehhhhc
Q 036425 36 AKEHVVGWYSTGPK----LRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKE 95 (252)
Q Consensus 36 p~e~iVGWYstg~~----~~~~~~~Ih~~~~~~~~~PI~L~vD~~~~~~~lpi~~Y~~~~~~~~ 95 (252)
.++.+||||+|.+. ++..|+..|..|....+.-|.+++|+.. -++.+|...+.|..
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~----~~lgaFrLtp~G~~ 172 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF----QETGFFKLTDHGLE 172 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT----TEEEEEEECHHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC----CeeeEEEeccchhh
Confidence 58999999998653 5677877777676666777999999763 27899999887754
No 6
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=96.93 E-value=0.00066 Score=55.79 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=54.2
Q ss_pred eeeecccCCCCCCceeEeCHHHHHHHHHHHhhcCCCCeeEEEEecCCC----CCCCcHHHHHHHhccCCCcEEEEEeCCC
Q 036425 2 VISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPK----LRENDLDIHQLFHNYVPNPVLVIIDVQP 77 (252)
Q Consensus 2 sF~Vp~~e~~~~~~~~~iD~~~~~~m~~l~kkV~p~e~iVGWYstg~~----~~~~~~~Ih~~~~~~~~~PI~L~vD~~~ 77 (252)
+|.+|...+.+. +...|.+- .++. ....++.+||||+|.+. ++..|+..|..|....+..|++++++..
T Consensus 53 v~~~pq~~t~~~--~~~~~~~e---~~~~--~~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~ 125 (178)
T 2znr_A 53 VIVPKQSAGPDY--CDMENVEE---LFNV--QDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKH 125 (178)
T ss_dssp EEECCEEEETTE--EEECCHHH---HHHH--HHHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGG
T ss_pred EEeCCcCCCCCe--eccCCHHH---HHHH--HHhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCC
Confidence 466776554332 22344321 1221 23468999999999754 5667777777776667778999999875
Q ss_pred CCCCCceEEEEeehhhhc
Q 036425 78 KELGIPTKAYYDVEEVKE 95 (252)
Q Consensus 78 ~~~~lpi~~Y~~~~~~~~ 95 (252)
+ .+.+|...+.+..
T Consensus 126 ~----~~~afrl~~~g~~ 139 (178)
T 2znr_A 126 K----DTGIFRLTNAGML 139 (178)
T ss_dssp T----EEEEEEECHHHHH
T ss_pred C----cceEEEEECCcEe
Confidence 3 3799998876543
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=94.52 E-value=0.27 Score=38.35 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=55.2
Q ss_pred eeecccCCCCCCceeEeCHHHHHHHHHHHhhcCCCCeeEEEEecCCC--CCCCcHHHHHHHhccCCCcEEEEEeCCCCCC
Q 036425 3 ISVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPK--LRENDLDIHQLFHNYVPNPVLVIIDVQPKEL 80 (252)
Q Consensus 3 F~Vp~~e~~~~~~~~~iD~~~~~~m~~l~kkV~p~e~iVGWYstg~~--~~~~~~~Ih~~~~~~~~~PI~L~vD~~~~~~ 80 (252)
|.+|...... ..+.+|.+.+....+...+ ..+.+||||++-+. ..++...++. .. .+..+++++.+.. ++
T Consensus 43 ~p~~n~~~~~--~~f~~dp~~~~~~~~~~~~--~g~~ivG~~HSHP~~~~~PS~~D~~~--~~-~~~~~~lIvs~~~-~~ 114 (146)
T 2kks_A 43 YPLNNLDQSP--EHFSMDPREQLTAVKDMRK--NGWVMLGNFHSHPATPARPSAEDKRL--AF-DPSLSYLIISLAE-PQ 114 (146)
T ss_dssp ECCCCCSCCS--SSCCCCHHHHHHHHHHHHH--HTCEEEEEEEEESSSCSSCCHHHHTT--CC-SSSCEEEEEECSC-SS
T ss_pred EECCCcCCCC--ceEEECHHHHHHHHHHHHH--CCCEEEEEEeCCCcCCCCCCHHHHHh--hh-cCCCeEEEEEccC-CC
Confidence 4555333322 2377888776665544443 36899999999664 2344444442 11 2445788887643 23
Q ss_pred CCceEEEEeehhhhccccccccceeeeeeeeeee
Q 036425 81 GIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAA 114 (252)
Q Consensus 81 ~lpi~~Y~~~~~~~~~~~~~~~~~F~~v~~~i~~ 114 (252)
...+++|... ++ .|.++|+.+..
T Consensus 115 ~~~~~af~~~-----~~------~~~e~~i~~~~ 137 (146)
T 2kks_A 115 KPVCKSFLIK-----KD------GVDEEEIILKE 137 (146)
T ss_dssp SCEEEEEEEC-----SS------CEEEECEEEES
T ss_pred ceEEEEEEEe-----CC------eEEEEEEEEeh
Confidence 4568999872 22 48888887743
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=90.48 E-value=0.52 Score=37.00 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=48.4
Q ss_pred eEeCHHHHHHHHHHHhhcCCCCeeEEEEecCCCC--CCCcHHHHHHHhccCCCcEEEEEeCCCCCCC-CceEEEEeehhh
Q 036425 17 WFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKL--RENDLDIHQLFHNYVPNPVLVIIDVQPKELG-IPTKAYYDVEEV 93 (252)
Q Consensus 17 ~~iD~~~~~~m~~l~kkV~p~e~iVGWYstg~~~--~~~~~~Ih~~~~~~~~~PI~L~vD~~~~~~~-lpi~~Y~~~~~~ 93 (252)
+.+|.+.+....+...+ .++.+||||++-+.. .++...+..+ ..+..++++|.+.. ++ ..+++|....
T Consensus 57 f~~dp~~~~~~~~~~~~--~g~~ivG~yHSHP~~~~~PS~~D~~~~---~~~~~~~lIvs~~~--~~~~~~~af~~~~-- 127 (153)
T 2kcq_A 57 YELTADDYRAADAAAQE--QGLDVVGVYHSHPDHPARPSATDLEEA---TFPGFTYVIVSVRD--GAPEALTAWALAP-- 127 (153)
T ss_dssp SSCCCCSHHHHHHHHHH--HTCEEEEEEEECSSSSSSCCHHHHHTC---CCTTSEEEEEEEET--TEEEEEEEEEECT--
T ss_pred EEECHHHHHHHHHHHHH--CCCeEEEEEeCCCCCCCCCCHHHHHhh---hcCCCeEEEEECCC--CCccEEEEEEEeC--
Confidence 66775544444444433 368999999997652 3343334322 22456888886432 23 3478887731
Q ss_pred hccccccccceeeeeeeeeeec
Q 036425 94 KENATQKSQKVFVHVPSEIAAH 115 (252)
Q Consensus 94 ~~~~~~~~~~~F~~v~~~i~~~ 115 (252)
....|.+.++.|...
T Consensus 128 -------~~g~~~e~~i~v~~~ 142 (153)
T 2kcq_A 128 -------DRSEFHREDIVRPDP 142 (153)
T ss_dssp -------TCSCEEEECCBCCCS
T ss_pred -------CCCcEEEEEEEEecC
Confidence 112588888877543
No 9
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=85.87 E-value=0.36 Score=31.01 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=9.4
Q ss_pred CeeEEEEecCCC
Q 036425 38 EHVVGWYSTGPK 49 (252)
Q Consensus 38 e~iVGWYstg~~ 49 (252)
-.|||||+|.-.
T Consensus 24 g~ivgwyct~lt 35 (62)
T 2rh2_A 24 GQIVGWYCTNLT 35 (62)
T ss_dssp EEEEEEECCSSC
T ss_pred ceEeEEEEcccc
Confidence 479999998643
No 10
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=61.64 E-value=17 Score=20.32 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=21.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036425 136 TLANEVTGKLTALKGLDARLREIRGYLDL 164 (252)
Q Consensus 136 ~l~~~l~~~~~al~~L~~~l~~i~~Yl~~ 164 (252)
.+..++..+..-++.|+.|++.+-+-+++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666677788999999998887764
No 11
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=52.25 E-value=16 Score=27.12 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=29.4
Q ss_pred CCCeeEEEEecCCC--CCCCcHHHHHHHhccCCCcEEEEEeCCCCCCCCceEEEEe
Q 036425 36 AKEHVVGWYSTGPK--LRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYD 89 (252)
Q Consensus 36 p~e~iVGWYstg~~--~~~~~~~Ih~~~~~~~~~PI~L~vD~~~~~~~lpi~~Y~~ 89 (252)
..+.+||||++-+. ..+....+..+. . +..+++++.... +.-.+++|..
T Consensus 61 ~~~~ivG~~HSHP~~~~~PS~~D~~~~~--~-~~~~~lIvs~~~--~~~~~~~f~~ 111 (124)
T 1oi0_A 61 IGMKVFGTVHSHPSPSCRPSEEDLSLFT--R-FGKYHIIVCYPY--DENSWKCYNR 111 (124)
T ss_dssp CCCEEEEEEEEESSSCCSCCHHHHHHHH--H-SCSEEEEEETTC--CTTCEEEEET
T ss_pred CCCEEEEEEEECcCCCCccCHHHHHhhh--c-CCCEEEEEEccC--CCceEEEEec
Confidence 56999999999664 233444444322 2 446888887532 2234677765
No 12
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=49.52 E-value=16 Score=31.15 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCeeEEEEecCCC----CCCCcHHHHHHHhc-cCCCcEEEEEeCCCCCCCCceEEEEeehhhhc
Q 036425 36 AKEHVVGWYSTGPK----LRENDLDIHQLFHN-YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKE 95 (252)
Q Consensus 36 p~e~iVGWYstg~~----~~~~~~~Ih~~~~~-~~~~PI~L~vD~~~~~~~lpi~~Y~~~~~~~~ 95 (252)
-++..+||=+|.+. +++.|+..|-.|.. ..+..|.+++-+.+ +...+.+|...+.|..
T Consensus 108 ~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftp--gs~sl~af~LT~~G~~ 170 (254)
T 2og4_A 108 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTP--GSVSLSAYNLTDEGYQ 170 (254)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEET--TEEEEEEEEECHHHHH
T ss_pred cCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCC--CCceeEEEEcChhhhh
Confidence 67899999999653 56788888966655 54678888775433 3445788988877643
No 13
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=45.90 E-value=8.5 Score=36.23 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=42.3
Q ss_pred CCCeeEEEEecCCC----CCCCcHHHHHHHhccC-CCcEEEEEeCCCCCCCCceEEEEeehhhh
Q 036425 36 AKEHVVGWYSTGPK----LRENDLDIHQLFHNYV-PNPVLVIIDVQPKELGIPTKAYYDVEEVK 94 (252)
Q Consensus 36 p~e~iVGWYstg~~----~~~~~~~Ih~~~~~~~-~~PI~L~vD~~~~~~~lpi~~Y~~~~~~~ 94 (252)
.++.++||-+|.+. +++.|+..|--+...+ ...|.+++- ...|...+.||...+.|.
T Consensus 419 ~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvs--ftPGS~SLsAy~LT~eGy 480 (565)
T 3sbg_A 419 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIF--STPGSVSLSAYNLTDEGY 480 (565)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEE--EETTEEEEEEEEECHHHH
T ss_pred ccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEE--ecCCceEEEEEecCHhHH
Confidence 67899999998543 6788999997665543 356777765 335778899999988873
No 14
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=42.84 E-value=23 Score=30.59 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=40.0
Q ss_pred CCCeeEEEEecCCC----CCCCcHHHHHHHhcc----C-CCcEEEEEeCCCCCCCCceEEEEeehhhh
Q 036425 36 AKEHVVGWYSTGPK----LRENDLDIHQLFHNY----V-PNPVLVIIDVQPKELGIPTKAYYDVEEVK 94 (252)
Q Consensus 36 p~e~iVGWYstg~~----~~~~~~~Ih~~~~~~----~-~~PI~L~vD~~~~~~~lpi~~Y~~~~~~~ 94 (252)
-++..|||=+|.+. +++.|+..|--|... . +..|.+++-+.+ +...+.+|...+.|.
T Consensus 107 ~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftp--gs~sl~af~LT~~G~ 172 (273)
T 2p8r_A 107 RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTP--GSVSLTAYKLTPSGY 172 (273)
T ss_dssp TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEET--TEEEEEEEEECHHHH
T ss_pred ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCC--CCceeEEEEcChHHh
Confidence 78999999999653 567898889666542 2 367887775433 444578998877664
No 15
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=26.66 E-value=1.1e+02 Score=23.51 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 036425 153 ARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELIK 197 (252)
Q Consensus 153 ~~l~~i~~Yl~~V~~G~~~~d~~ilR~l~~lv~~lP~~~~~~f~~ 197 (252)
.-++.|-.+|+-..+|. -|+..|-+.|.+++..+| ++.+.+.+
T Consensus 61 giL~~l~~WL~PLpDgs-LP~~~Ir~~lL~~L~~lP-I~~e~Lk~ 103 (145)
T 2xpp_A 61 GILDEIKGWLEPLPDKS-MPNIKIRKRLLDVLKTMK-IHKEHLVT 103 (145)
T ss_dssp THHHHHHHHHSCCTTSC-CCCHHHHHHHHHHHHTSC-CCHHHHHH
T ss_pred CHHHHHHHHhCcCCCCC-CCCHHHHHHHHHHHHHCC-CCHHHhhc
Confidence 34688888999888885 567999999999999999 67655543
No 16
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=21.60 E-value=1.6e+02 Score=23.40 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhhCCCCCHHHHH
Q 036425 153 ARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELI 196 (252)
Q Consensus 153 ~~l~~i~~Yl~~V~~G~~~~d~~ilR~l~~lv~~lP~~~~~~f~ 196 (252)
.-++.|..+|+-..+|. -|+..|=+.|.+++..+| ++.+.+.
T Consensus 76 giL~~l~~WLePLpDgS-LP~~~Ir~~lL~~L~~lP-I~~e~Lk 117 (170)
T 3nfq_A 76 NLLQSVRIWLEPLPDGS-LPSFEIQKSLFAALNDLP-VKTEHLK 117 (170)
T ss_dssp THHHHHHHHHSCCTTSC-CCCHHHHHHHHHHHHTSC-CCHHHHH
T ss_pred chHHHHHHHhCcCCCCC-CCcHHHHHHHHHHHHHCC-CCHHHHh
Confidence 34678888998887777 678999999999999999 6765544
No 17
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=21.13 E-value=1.1e+02 Score=16.57 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 036425 144 KLTALKGLDARLREIRGYLDL 164 (252)
Q Consensus 144 ~~~al~~L~~~l~~i~~Yl~~ 164 (252)
+.+|...|...++.++.|+++
T Consensus 6 vlnAA~~LS~sMQdLLn~vNa 26 (27)
T 3tj5_B 6 LLNAATALSGSMQYLLNYVNA 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 677888888888999999874
No 18
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=20.82 E-value=1.8e+02 Score=21.52 Aligned_cols=57 Identities=7% Similarity=0.055 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhhCC--CCCHHHHHHHHHhhhchH
Q 036425 145 LTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLP--NLNVAELIKAFSVKTNDM 206 (252)
Q Consensus 145 ~~al~~L~~~l~~i~~Yl~~V~~G~~~~d~~ilR~l~~lv~~lP--~~~~~~f~~~~~~~~~D~ 206 (252)
...++++..=+..++++-.+ -+..++++..+..+|..|= .+++++|...+....|=.
T Consensus 16 ~~nvkKck~FL~tLi~las~-----~~~spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~ 74 (114)
T 2p6v_A 16 MENVXXCXNFLSTLIXLASS-----GXQSTETAANVXELVQNLLDGXIEAEDFTSRLYRELNSS 74 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-----SSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cccChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcCC
Confidence 33444444445555444332 3467888999888886654 578889988877666543
No 19
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.64 E-value=3.3e+02 Score=21.77 Aligned_cols=81 Identities=10% Similarity=0.172 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHhhCCCCCHHHHHHHHHhh-hchHHHHHHHHHHH
Q 036425 140 EVTGKLTALKGLDARLREIRGYLDLVIDEKLPL--NHEILYHLQDVFNLLPNLNVAELIKAFSVK-TNDMMLVIYLSSLI 216 (252)
Q Consensus 140 ~l~~~~~al~~L~~~l~~i~~Yl~~V~~G~~~~--d~~ilR~l~~lv~~lP~~~~~~f~~~~~~~-~~D~lmv~yLs~lt 216 (252)
.+......|..++..++.+-+-|.....|...+ |.+++..|.+.|.+.- ..+.+..... -+|-++ +.
T Consensus 70 ~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~q----p~i~~Li~e~~ddee~L----~e-- 139 (186)
T 1oxz_A 70 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMR----PTLFRLASDTEDNDEAL----AE-- 139 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHCCSCHHHH----HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHH----HHHHHHHHHccCCHHHH----HH--
Confidence 344556677888888888888888888887544 8999999999997653 4555666543 344443 33
Q ss_pred HHHHHHHHHHHhhhhc
Q 036425 217 RSVIALHNLINNKILN 232 (252)
Q Consensus 217 k~~~~l~e~l~~~~~~ 232 (252)
.+.+|+.+++-++.
T Consensus 140 --lL~~ND~Ln~vl~k 153 (186)
T 1oxz_A 140 --ILQANDNLTQVINL 153 (186)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHhhHHHHHHHHH
Confidence 34455555555443
Done!