BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036426
         (167 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P54738|PKN6_MYXXA Serine/threonine-protein kinase pkn6 OS=Myxococcus xanthus GN=pkn6
           PE=2 SV=1
          Length = 710

 Score = 31.2 bits (69), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 14  ANPQNDPTPNPSSPSRQEPRRKRRAVAKGMQE 45
           A    DP PNPS    + P +K  AVAKG  E
Sbjct: 614 AKASGDPEPNPSRVRERAPTQKVAAVAKGRLE 645


>sp|Q8NI60|ADCK3_HUMAN Chaperone activity of bc1 complex-like, mitochondrial OS=Homo
           sapiens GN=ADCK3 PE=1 SV=1
          Length = 647

 Score = 30.4 bits (67), Expect = 5.5,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 34  RKRRAVAKGMQETFSKTSMLVNFLPTGTLLTFEML--LPSVSNNGYFSPVSTQIIHSLLG 91
           RK R + KG    F     +V+ L +  +LT E++   P     G    +  +I +++L 
Sbjct: 416 RKFRDLLKG--HPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEGLSQEIRNEICYNILV 473

Query: 92  LCSLSCFFFHFTDSFKGPDVPK---DDNKYKVGLTDFHVT 128
           LC    F FHF  +   P+      D  ++KV L DF  T
Sbjct: 474 LCLRELFEFHFMQT--DPNWSNFFYDPQQHKVALLDFGAT 511


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,896,597
Number of Sequences: 539616
Number of extensions: 2809715
Number of successful extensions: 7023
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7019
Number of HSP's gapped (non-prelim): 22
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)