Query 036426
Match_columns 167
No_of_seqs 111 out of 125
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 21:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_M Photosystem II reaction 29.8 5.4 0.00018 24.7 -1.4 14 150-163 6-19 (36)
2 3dac_P Cellular tumor antigen 18.8 20 0.00068 19.8 -0.4 14 51-64 4-17 (21)
3 1k2d_P MBP peptide, myelin bas 13.8 47 0.0016 18.9 0.3 6 162-167 11-16 (26)
4 2wnw_A Activated by transcript 9.2 1.5E+02 0.005 25.9 2.1 17 5-21 182-198 (447)
5 2kv5_A FST, putative uncharact 7.6 1.4E+02 0.0047 18.0 0.9 13 145-157 9-21 (33)
6 2vda_B Maltoporin; sugar trans 7.5 1.4E+02 0.0049 17.2 0.9 12 145-156 10-21 (28)
7 3fzg_A 16S rRNA methylase; met 7.4 83 0.0028 25.5 -0.2 32 126-164 123-154 (200)
8 2hjn_A MPS1 binder 1, maintena 6.9 3E+02 0.01 22.7 3.0 32 30-61 40-73 (236)
9 1y2y_A Ribosome biogenesis pro 6.6 2E+02 0.0067 19.3 1.4 9 5-13 8-16 (58)
10 2l36_A MSI594; antimicrobial p 5.3 2.9E+02 0.01 15.5 1.4 22 40-61 3-24 (26)
No 1
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=29.78 E-value=5.4 Score=24.75 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=12.2
Q ss_pred HHHhhhheeeeccC
Q 036426 150 VGINCSGLFWSFPT 163 (167)
Q Consensus 150 vG~v~S~lF~iFPt 163 (167)
.|++++.||+.+||
T Consensus 6 l~fiAt~Lfi~iPt 19 (36)
T 3arc_M 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999986
No 2
>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=18.83 E-value=20 Score=19.79 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=11.5
Q ss_pred hhhcccCChhhHHH
Q 036426 51 SMLVNFLPTGTLLT 64 (167)
Q Consensus 51 a~La~LLPTGTvla 64 (167)
+.|-||||.+++|.
T Consensus 4 S~l~kLLp~~~~ls 17 (21)
T 3dac_P 4 SDLWKLLPENNVLS 17 (26)
T ss_pred chhhhhCCccceec
Confidence 56889999999864
No 3
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=13.78 E-value=47 Score=18.94 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=4.0
Q ss_pred cCCCCC
Q 036426 162 PTQDTA 167 (167)
Q Consensus 162 Pt~RhG 167 (167)
|+.|||
T Consensus 11 psqrhg 16 (26)
T 1k2d_P 11 PSQRHG 16 (26)
T ss_pred cccccc
Confidence 666765
No 4
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=9.20 E-value=1.5e+02 Score=25.93 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.9
Q ss_pred cccceeEEecCCCCCCC
Q 036426 5 EDIGIKIYTANPQNDPT 21 (167)
Q Consensus 5 ~~~g~~v~~a~~~~~~~ 21 (167)
++.||.|+.-+++|||.
T Consensus 182 ~~~Gi~i~~is~qNEP~ 198 (447)
T 2wnw_A 182 RRHGINVQALSVQNEPV 198 (447)
T ss_dssp HHTTCCCCEEESCSSTT
T ss_pred HHcCCCeeEEeeeccCC
Confidence 56799999999999983
No 5
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=7.60 E-value=1.4e+02 Score=18.03 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.0
Q ss_pred hhhhHHHHhhhhe
Q 036426 145 SFPLMVGINCSGL 157 (167)
Q Consensus 145 ~lPl~vG~v~S~l 157 (167)
..|+.||++-+++
T Consensus 9 IaPivVGvvl~L~ 21 (33)
T 2kv5_A 9 IAPIFVGLVLEMI 21 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4699999987653
No 6
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=7.53 E-value=1.4e+02 Score=17.16 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.2
Q ss_pred hhhhHHHHhhhh
Q 036426 145 SFPLMVGINCSG 156 (167)
Q Consensus 145 ~lPl~vG~v~S~ 156 (167)
-||++|.++++.
T Consensus 10 klplavav~agv 21 (28)
T 2vda_B 10 KLPLAVAVAAGV 21 (28)
T ss_dssp CCTHHHHHHHHT
T ss_pred cCchHHHHHHHH
Confidence 478888888764
No 7
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=7.43 E-value=83 Score=25.48 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=26.4
Q ss_pred CcceeeCCCCcchHHHHHHhhhhHHHHhhhheeeeccCC
Q 036426 126 HVTACLFPDHVKYMDQVMESFPLMVGINCSGLFWSFPTQ 164 (167)
Q Consensus 126 ~v~~CffP~~~~~~~evl~~lPl~vG~v~S~lF~iFPt~ 164 (167)
++..|+ +.......++++.|..+ .+|+.|||+
T Consensus 123 k~LHlL-~~~~~al~~v~~~L~pg------gvfISfptk 154 (200)
T 3fzg_A 123 KMLPVL-KQQDVNILDFLQLFHTQ------NFVISFPIK 154 (200)
T ss_dssp TCHHHH-HHTTCCHHHHHHTCEEE------EEEEEEECC
T ss_pred hHHHhh-hhhHHHHHHHHHHhCCC------CEEEEeChH
Confidence 888899 88777778888888765 899999965
No 8
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=6.92 E-value=3e+02 Score=22.68 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=16.3
Q ss_pred CCccchhhhhHHHHHHHhhhhhhhccc--CChhh
Q 036426 30 QEPRRKRRAVAKGMQETFSKTSMLVNF--LPTGT 61 (167)
Q Consensus 30 ~~~~~~~~~~~~~i~ktlssta~La~L--LPTGT 61 (167)
..++.++-..++-+++++.+-.||-.+ ||.|-
T Consensus 40 ~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~ 73 (236)
T 2hjn_A 40 GTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGE 73 (236)
T ss_dssp --------CHHHHHHHHHHGGGC---CCSCCTTC
T ss_pred CCCCccHHHHHHHHHHHhcCCcCHHHHhcCcCCC
Confidence 455666777899999999874477666 78763
No 9
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Probab=6.62 E-value=2e+02 Score=19.27 Aligned_cols=9 Identities=44% Similarity=0.601 Sum_probs=7.1
Q ss_pred cccceeEEe
Q 036426 5 EDIGIKIYT 13 (167)
Q Consensus 5 ~~~g~~v~~ 13 (167)
.+.|-++||
T Consensus 8 ~~~g~~~YT 16 (58)
T 1y2y_A 8 GPDGKRIYT 16 (58)
T ss_dssp SSSSSCCCB
T ss_pred CCCCCeeee
Confidence 467889999
No 10
>2l36_A MSI594; antimicrobial peptides, LPS, AMP, TR-NOE, antimicrobial PROT; NMR {Synthetic}
Probab=5.33 E-value=2.9e+02 Score=15.53 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhhhhcccCChhh
Q 036426 40 AKGMQETFSKTSMLVNFLPTGT 61 (167)
Q Consensus 40 ~~~i~ktlssta~La~LLPTGT 61 (167)
-+++.|.-.+.+-..+.|-||-
T Consensus 3 gkalkkakkgigavlkvlttgl 24 (26)
T 2l36_A 3 GKALKKAKKGIGAVLKVLTTGL 24 (26)
T ss_dssp HHHHHHHGGGGGHHHHTGGGTC
T ss_pred hHHHHHHHhhhHHHHHHHHhcc
Confidence 3566677777777777777774
Done!