Query 036428
Match_columns 138
No_of_seqs 151 out of 1151
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh1_A TRNA-specific adenosine 99.7 3.2E-17 1.1E-21 128.8 4.9 61 77-138 23-83 (189)
2 1wkq_A Guanine deaminase; doma 99.7 4.4E-17 1.5E-21 125.5 5.1 61 78-138 9-69 (164)
3 2nx8_A TRNA-specific adenosine 99.6 7.9E-17 2.7E-21 125.4 4.9 61 77-138 13-73 (179)
4 2a8n_A Cytidine and deoxycytid 99.6 8.7E-17 3E-21 120.2 4.8 60 78-138 2-61 (144)
5 1z3a_A TRNA-specific adenosine 99.6 1.8E-16 6.2E-21 122.0 5.3 60 78-138 7-66 (168)
6 2b3j_A TRNA adenosine deaminas 99.6 2.5E-16 8.4E-21 119.9 5.3 60 78-138 5-64 (159)
7 2g84_A Cytidine and deoxycytid 99.6 4.5E-16 1.5E-20 122.5 6.4 62 76-138 24-87 (197)
8 1p6o_A Cytosine deaminase; hyd 99.6 3.2E-16 1.1E-20 119.8 4.5 61 77-138 11-73 (161)
9 1wwr_A TRNA adenosine deaminas 99.6 5.8E-16 2E-20 119.9 5.1 59 79-138 22-80 (171)
10 2w4l_A DCMP deaminse, deoxycyt 99.5 1.3E-14 4.5E-19 112.8 7.1 66 71-138 4-89 (178)
11 2hvw_A Deoxycytidylate deamina 99.5 1.8E-14 6.3E-19 112.8 6.4 60 77-138 39-113 (184)
12 1vq2_A DCMP deaminase, deoxycy 99.4 8.5E-14 2.9E-18 108.3 5.0 43 79-123 2-44 (193)
13 2g6v_A Riboflavin biosynthesis 99.4 4.1E-13 1.4E-17 114.8 7.2 58 77-138 27-85 (402)
14 2b3z_A Riboflavin biosynthesis 99.4 3.1E-13 1.1E-17 114.3 6.2 58 77-138 11-69 (373)
15 2hxv_A Diaminohydroxyphosphori 99.4 6.5E-13 2.2E-17 111.9 6.8 55 80-138 14-69 (360)
16 1uwz_A Cytidine deaminase; CDD 98.9 1.6E-09 5.3E-14 80.9 5.8 57 80-137 3-60 (136)
17 2fr5_A Cytidine deaminase; tet 98.8 7.8E-09 2.7E-13 78.3 5.9 59 78-137 13-72 (146)
18 2z3g_A Blasticidin-S deaminase 98.7 5.5E-08 1.9E-12 72.0 7.3 57 77-137 4-61 (130)
19 3g8q_A Predicted RNA-binding p 98.4 7.1E-08 2.4E-12 79.8 1.6 32 99-137 20-51 (278)
20 3b8f_A Putative blasticidin S 98.3 1.1E-06 3.7E-11 65.9 5.7 56 79-137 3-59 (142)
21 1r5t_A Cytidine deaminase; zin 98.1 4.7E-06 1.6E-10 62.4 6.8 59 78-137 9-68 (142)
22 3r2n_A Cytidine deaminase; str 98.1 6.2E-06 2.1E-10 62.0 6.1 58 79-137 9-67 (138)
23 2d30_A Cytidine deaminase; pur 98.0 9.9E-06 3.4E-10 60.9 6.6 60 77-137 9-69 (141)
24 3mpz_A Cytidine deaminase; ssg 97.7 6.9E-05 2.3E-09 57.2 6.4 60 77-137 22-82 (150)
25 1ctt_A Cytidine deaminase; hyd 97.3 0.00038 1.3E-08 57.9 6.0 58 79-137 187-245 (294)
26 3oj6_A Blasticidin-S deaminase 96.8 0.0053 1.8E-07 47.0 8.2 58 76-137 27-85 (158)
27 1ctt_A Cytidine deaminase; hyd 96.8 0.0025 8.6E-08 52.9 6.6 57 80-137 49-109 (294)
28 3dmo_A Cytidine deaminase; str 96.3 0.0095 3.2E-07 44.6 6.4 60 77-137 8-68 (138)
29 2nyt_A Probable C->U-editing e 96.3 0.0044 1.5E-07 48.5 4.5 38 98-138 30-72 (190)
30 4eg2_A Cytidine deaminase; UMP 94.2 0.074 2.5E-06 44.3 5.8 57 80-137 192-249 (298)
31 4eg2_A Cytidine deaminase; UMP 88.9 0.68 2.3E-05 38.5 5.7 57 80-137 52-112 (298)
32 3mtw_A L-arginine carboxypepti 31.4 40 0.0014 24.4 3.3 18 104-121 23-40 (403)
33 1nwz_A PYP, photoactive yellow 27.9 19 0.00065 25.8 1.0 27 100-128 25-52 (125)
34 2fb5_A Hypothetical membrane s 27.4 31 0.0011 27.3 2.2 28 104-131 136-169 (205)
35 3hpa_A Amidohydrolase; signatu 21.7 71 0.0024 24.7 3.3 18 104-121 52-69 (479)
36 1mzu_A PPR; photoactive yellow 21.5 25 0.00085 25.5 0.5 28 100-129 30-58 (129)
No 1
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=128.84 Aligned_cols=61 Identities=26% Similarity=0.411 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
..+|++||++|+++|+++...++ +|||||||+||+||++|+|++.+.+||+.|||++||++
T Consensus 23 ~~~d~~~M~~Al~lA~~a~~~~~-~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~ 83 (189)
T 3dh1_A 23 MEETEKWMEEAMHMAKEALENTE-VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQ 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhCCC-CCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHH
Confidence 45689999999999999988775 99999999999999999999888899999999999973
No 2
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.66 E-value=4.4e-17 Score=125.47 Aligned_cols=61 Identities=48% Similarity=0.756 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
..|+.||++|+++|+++...+++.|||||||+||+||++|+|+.....||+.|||++||++
T Consensus 9 ~~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~ 69 (164)
T 1wkq_A 9 MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 69 (164)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHH
Confidence 4588999999999999998884599999999999999999999988899999999999973
No 3
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.65 E-value=7.9e-17 Score=125.44 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
+++|++||++|+++|+++...++ +|||||||+||+||++|+|+....+||+.|||++||++
T Consensus 13 ~~~d~~~M~~Al~~A~~a~~~g~-~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~ 73 (179)
T 2nx8_A 13 LEEQTYFMQEALKESEKSLQKAE-IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 73 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccccCC-CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHH
Confidence 35789999999999999998764 99999999999999999999998899999999999973
No 4
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.64 E-value=8.7e-17 Score=120.21 Aligned_cols=60 Identities=32% Similarity=0.380 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
.+|++||++|+++|+++...+ +.|||||||+||+||++|+|+.....||+.|||++||++
T Consensus 2 ~~d~~~m~~A~~~A~~a~~~~-~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~ 61 (144)
T 2a8n_A 2 AERTHFMELALVEARSAGERD-EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM 61 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcCC-CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHH
Confidence 358899999999999999876 499999999999999999999988899999999999973
No 5
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.63 E-value=1.8e-16 Score=122.05 Aligned_cols=60 Identities=30% Similarity=0.418 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
.+|++||++|+++|+++...++ .|||||||+||+||++|+|+.....||+.|||++||++
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~~~-~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~ 66 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 66 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhcCC-CcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHH
Confidence 4588999999999999988764 99999999999999999999988899999999999973
No 6
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.62 E-value=2.5e-16 Score=119.93 Aligned_cols=60 Identities=38% Similarity=0.590 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
++|++||++|+++|+++...+ +.|||||||+||+||++|+|......||+.|||++||++
T Consensus 5 ~~d~~~m~~A~~~A~~a~~~~-~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~ 64 (159)
T 2b3j_A 5 TNDIYFMTLAIEEAKKAAQLG-EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 64 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCC-CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHH
Confidence 468999999999999998876 499999999999999999999988899999999999973
No 7
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.62 E-value=4.5e-16 Score=122.49 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=55.7
Q ss_pred CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-C-CeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 76 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-S-DEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 76 ~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-d-GeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
....|++||++|+++|+++...++ .|||||||+ | |+||++|+|++...+||+.|||++||++
T Consensus 24 ~~~~d~~~M~~Al~~A~~a~~~~~-~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~ 87 (197)
T 2g84_A 24 VLAAPEARMGYVLELVRANIAADG-GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSL 87 (197)
T ss_dssp BCCSHHHHHHHHHHHHHHHHHTTC-CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCC-CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHH
Confidence 455799999999999999995445 999999997 8 9999999999988999999999999973
No 8
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.61 E-value=3.2e-16 Score=119.80 Aligned_cols=61 Identities=28% Similarity=0.448 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEE--eCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV--RSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV--~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
+++|++||++|+++|+++...+ +.||||||| +||+||++|+|.....+||+.|||++||++
T Consensus 11 ~~~d~~~M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~ 73 (161)
T 1p6o_A 11 SKWDQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLEN 73 (161)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHH
Confidence 4568999999999999999876 499999999 799999999999988899999999999973
No 9
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.60 E-value=5.8e-16 Score=119.91 Aligned_cols=59 Identities=41% Similarity=0.623 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
+|++||++|+++|+++...+ +.|||||||+||+||++|+|+.....||+.|||++||++
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~-~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~ 80 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKG-EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE 80 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCC-CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHH
Confidence 47899999999999999876 499999999999999999999998899999999999973
No 10
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=112.78 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=55.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhcccCCCCCcEEEEEE-eCCeEEEEEecCcccC------------CCC-------cch
Q 036428 71 AHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV-RSDEVVVSCHNMVLKH------------TDP-------TAH 130 (138)
Q Consensus 71 ~~~~~~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV-~dGeIIa~G~N~~~~~------------~Dp-------TaH 130 (138)
..+....++|++||++|+++|+++... +.||||||| +||+||++|||..... +|| +.|
T Consensus 4 ~~~~~~~~~d~~~M~~A~~~A~~s~~p--~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~H 81 (178)
T 2w4l_A 4 KKRDDYLEWPEYFMAVAFLSAQRSKDP--NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCH 81 (178)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTTCCCS--SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBC
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCC
Confidence 345566788999999999999999864 599999999 6999999999987542 454 799
Q ss_pred HHHHHhcC
Q 036428 131 AEVTAVRE 138 (138)
Q Consensus 131 AE~~AIr~ 138 (138)
||++||++
T Consensus 82 AE~~AI~~ 89 (178)
T 2w4l_A 82 AELNAIMN 89 (178)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999974
No 11
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.51 E-value=1.8e-14 Score=112.80 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccC---------------CCCcchHHHHHhcC
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKH---------------TDPTAHAEVTAVRE 138 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~---------------~DpTaHAE~~AIr~ 138 (138)
+++|++||++|+++|+++.. + +.|||||||+||+||++|||..... .|++.|||++||++
T Consensus 39 ~~~de~~M~~A~~~A~~s~~-~-~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~ 113 (184)
T 2hvw_A 39 LSWQDYFMANAELISKRSTC-N-RAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQ 113 (184)
T ss_dssp CCHHHHHHHHHHHHGGGCCC-T-TCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHH
Confidence 46899999999999999974 4 5999999999999999999987643 27899999999963
No 12
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.43 E-value=8.5e-14 Score=108.34 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCccc
Q 036428 79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLK 123 (138)
Q Consensus 79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~ 123 (138)
+|++||++|+++|+++.. . +.|||||||+||+||++|||....
T Consensus 2 ~d~~fM~~A~~~A~rs~~-~-~~~VGAVIV~dg~Iia~G~N~~~~ 44 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESKC-C-SWKVGAVIEKNGRIISTGYNGSPA 44 (193)
T ss_dssp CHHHHHHHHHHHHTTCCC-S-SBCCEEEEEETTEEEEEEECBCCT
T ss_pred CHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEeCCCCC
Confidence 478999999999999975 3 499999999999999999999875
No 13
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.39 E-value=4.1e-13 Score=114.79 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHHHHhcccCC-CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 77 QDRDHEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g-~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
.++|++||++|+++|+++.... +++|||||||+||+||++|||+. +++.|||++||++
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~Ai~~ 85 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRM 85 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCC----TTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCC----CCccHHHHHHHHH
Confidence 4579999999999999998642 46999999999999999999987 4799999999973
No 14
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.39 E-value=3.1e-13 Score=114.29 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHHHHhcccC-CCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 77 QDRDHEFLSKAVEEAYKGVEC-GDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~-g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
-+.|++||++|+++|+++... .+++|||||||+||+||++|||+. +++.|||++||++
T Consensus 11 ~~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~ 69 (373)
T 2b3z_A 11 GSMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLK----YGEAHAEVHAIHM 69 (373)
T ss_dssp --CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCS----TTSCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHH
Confidence 346889999999999999864 246999999999999999999987 4799999999973
No 15
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.37 E-value=6.5e-13 Score=111.90 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcccCC-CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 80 DHEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 80 D~~~Mr~AIelA~ka~~~g-~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
.+.||++|+++|+++.... +++|||||||+||+||++|||+. +++.|||++||++
T Consensus 14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~ 69 (360)
T 2hxv_A 14 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIES 69 (360)
T ss_dssp HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHH
Confidence 4569999999999998653 46999999999999999999987 5799999999973
No 16
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=98.91 E-value=1.6e-09 Score=80.91 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
|+++|++|++.++++...-.+.||||+|+. ||+|+ .|+|......+++.|||..||+
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~ 60 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALF 60 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHH
Confidence 678999999999999886234999999996 89998 7999998888999999999986
No 17
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=98.78 E-value=7.8e-09 Score=78.32 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEE-eCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVV-RSDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV-~dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
+.++++|++|++.+++++....+.||||+|+ +||+|+ .|.|......+++.|||..||+
T Consensus 13 ~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~ 72 (146)
T 2fr5_A 13 EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHH
Confidence 4568899999999999987644699999999 589988 6999988888899999999986
No 18
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=98.67 E-value=5.5e-08 Score=71.96 Aligned_cols=57 Identities=9% Similarity=0.101 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEE-eCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV-RSDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV-~dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
.+.|+++|++|++.++++...+ +.||||+|+ +||+|+ .|.|.. ..+++.|||..||.
T Consensus 4 ~~~~~~L~~~A~~a~~~ay~~s-~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~ 61 (130)
T 2z3g_A 4 SQEESTLIERATATINSIPISE-DYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLG 61 (130)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCS-SSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCC-CCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHH
Confidence 4568889999999999998764 599999999 489988 599987 46789999999985
No 19
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=98.39 E-value=7.1e-08 Score=79.77 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.5
Q ss_pred CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 99 DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 99 ~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
+|+|||||||+||+||++|.+ ++.|||++||+
T Consensus 20 PNPpVGAVIVkDGeIIA~Ge~-------gTaHAEInAIr 51 (278)
T 3g8q_A 20 PKRTVTAALLEGGEIVAVEEA-------DDEHAERKLVR 51 (278)
T ss_dssp CCSSCEEEEEETTEEEEEEEC-------SSSCHHHHHHH
T ss_pred CCCCEEEEEEECCEEEEecCC-------CCCCHHHHHhC
Confidence 469999999999999999922 89999999986
No 20
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.28 E-value=1.1e-06 Score=65.86 Aligned_cols=56 Identities=5% Similarity=-0.079 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
.|+++|+.|++.+++++.... ||||+|+. ||+|+ .|.|......+++.|||..||.
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~ 59 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW--GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAIL 59 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC--EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCC--CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHH
Confidence 578899999999999987653 99999984 89888 7999988888899999999984
No 21
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=98.15 E-value=4.7e-06 Score=62.42 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
..+++++++|++.+++++..-.+.||||+|+. ||+|+ .|.|-....-+++.|||..||.
T Consensus 9 ~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~ 68 (142)
T 1r5t_A 9 RQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMI 68 (142)
T ss_dssp HHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHH
Confidence 45678999999999998875345899999995 88877 6999887777899999999984
No 22
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=98.07 E-value=6.2e-06 Score=61.99 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
.+++++++|++.+++++..-.+.||||+|.. ||+|+ .|.|-......++.|||..||.
T Consensus 9 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~ 67 (138)
T 3r2n_A 9 NWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMIS 67 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHH
Confidence 4677999999999998875445899999986 88876 9999887777789999999984
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=98.03 E-value=9.9e-06 Score=60.94 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
...|+++|++|++.+++++..-.+.||||+|+. ||+|+ .|.|-....-+.+.|||..||.
T Consensus 9 ~~~~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~ 69 (141)
T 2d30_A 9 HMNSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALF 69 (141)
T ss_dssp -CCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHH
Confidence 456889999999999999875445899999995 88766 8999887777789999999984
No 24
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.71 E-value=6.9e-05 Score=57.19 Aligned_cols=60 Identities=22% Similarity=0.097 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
...+++.+++|++..++++..-.+.+|||+|.. ||+|+ .|.|-....-..+.|||..||.
T Consensus 22 ~~~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~ 82 (150)
T 3mpz_A 22 MVNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVC 82 (150)
T ss_dssp SCCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHH
Confidence 345678999999999998865445899999985 88877 9999887777789999999984
No 25
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.28 E-value=0.00038 Score=57.90 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
.|+++++.|++.+++++....+.||||+|+. ||+ |..|.|-.....+++.|||..||.
T Consensus 187 ~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~-i~tG~NvEnasy~~tlCAEr~Ai~ 245 (294)
T 1ctt_A 187 TGDALSQAAIAAANRSHMPYSKSPSGVALECKDGR-IFSGSYAENAAFNPTLPPLQGALI 245 (294)
T ss_dssp CSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSC-EEEEECBCCTTSTTCBCHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCC-EEEEEeeecCCCCCccCHHHHHHH
Confidence 3468999999999999877656999999995 775 667999998888999999999974
No 26
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=96.83 E-value=0.0053 Score=47.03 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=43.9
Q ss_pred CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 76 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 76 ~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
..+.|++.++.|.+..+++..++ +.+|||++.. ||+|+ .|.|-.. -..+.+||..||-
T Consensus 27 L~~ed~~Li~~A~~a~~~~PyS~-~f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~ 85 (158)
T 3oj6_A 27 LSAAGQNLIDTATSVINGIPVSD-FYSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLG 85 (158)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCS-SSCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHH
Confidence 45678889999999877643332 2799999986 88876 8999753 4568899999873
No 27
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=96.79 E-value=0.0025 Score=52.92 Aligned_cols=57 Identities=19% Similarity=0.049 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHH-HhcccCCCCCcEEEEEEe-CCeEEEEEecCcccC--CCCcchHHHHHhc
Q 036428 80 DHEFLSKAVEEA-YKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKH--TDPTAHAEVTAVR 137 (138)
Q Consensus 80 D~~~Mr~AIelA-~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~--~DpTaHAE~~AIr 137 (138)
++++|..+...| ++++..-.+.+|||++.. ||+|+ .|.|-.... -+.+.|||..||.
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~ 109 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAIS 109 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHH
Confidence 455555555444 556664345999999995 88866 899977543 2358999999974
No 28
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=96.31 E-value=0.0095 Score=44.63 Aligned_cols=60 Identities=20% Similarity=0.081 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
...+.+.+++|.+..++++..-.+.+|||++.. ||+ |-.|.|-....-..+.+||..||-
T Consensus 8 ~~~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~-iytG~NVEnasy~~t~CAEr~Ai~ 68 (138)
T 3dmo_A 8 HMTHHALIEAAKAAREKAYAPYSNFKVGAALVTNDGK-VFHGCNVENASYGLCNCAERTALF 68 (138)
T ss_dssp TCCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSC-EEEEECBCCSSGGGCBCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCC-EEEEEeecccccccccCHHHHHHH
Confidence 446788999999999998876556899999986 777 557999876655668999999873
No 29
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=96.25 E-value=0.0044 Score=48.47 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=30.6
Q ss_pred CCCCcEEEEEEe--C---CeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428 98 GDGGPFGAVVVR--S---DEVVVSCHNMVLKHTDPTAHAEVTAVRE 138 (138)
Q Consensus 98 g~~~PVGAVIV~--d---GeIIa~G~N~~~~~~DpTaHAE~~AIr~ 138 (138)
+.+..+.|..|+ + +.+|++|+|+. .+++.|||++||++
T Consensus 30 ~r~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~ 72 (190)
T 2nyt_A 30 GRNKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNT 72 (190)
T ss_pred CCCceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHH
Confidence 444778999986 3 46999999987 47899999999963
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=94.22 E-value=0.074 Score=44.35 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428 80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR 137 (138)
Q Consensus 80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr 137 (138)
+++.++.|++.+++++..-.+.||||.|.. ||+ |-.|.|-.....+++..||..||-
T Consensus 192 ~~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~-iytG~nvEnAay~~slcAEr~Al~ 249 (298)
T 4eg2_A 192 DEELIQQALRAMNISHSPYTQNFSGVALKMRSGA-IYLGAYAENAAFNPSLPPLQVALA 249 (298)
T ss_dssp CCHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSC-EEEEECBCCTTSTTCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCccCCCeEEEEEeCCCC-EEEEEeeeccccCCCCCHHHHHHH
Confidence 357899999999998876556899999996 677 567999887788899999999873
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=88.93 E-value=0.68 Score=38.54 Aligned_cols=57 Identities=23% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHH-HhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCC--CCcchHHHHHhc
Q 036428 80 DHEFLSKAVEEA-YKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHT--DPTAHAEVTAVR 137 (138)
Q Consensus 80 D~~~Mr~AIelA-~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~--DpTaHAE~~AIr 137 (138)
+.+++...+..| ++++..-.+.+|||++.. ||+ |-.|.|-...+. ..+-|||..||-
T Consensus 52 ~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~-i~~G~NvEna~as~~~t~CAEr~Ai~ 112 (298)
T 4eg2_A 52 DADLRVALLPIAAAYSYAPISEFYVGAIVRGISGR-LYLGANMEFTGAQLGQTVHAEQCAIS 112 (298)
T ss_dssp HHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSC-EEEEECBCCTTSCGGGCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCc-EEEEEcccccccccCccccHHHHHHH
Confidence 444554444444 455554456899999986 777 567899764322 247899999873
No 32
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=31.40 E-value=40 Score=24.42 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=15.9
Q ss_pred EEEEEeCCeEEEEEecCc
Q 036428 104 GAVVVRSDEVVVSCHNMV 121 (138)
Q Consensus 104 GAVIV~dGeIIa~G~N~~ 121 (138)
|+|+|+||+|++.|.+..
T Consensus 23 ~~V~I~dG~I~~Ig~~~~ 40 (403)
T 3mtw_A 23 PLVIVTDGRITSIGKKGD 40 (403)
T ss_dssp EEEEEETTEEEEEEETTC
T ss_pred cEEEEECCEEEEEeCCCC
Confidence 899999999999998754
No 33
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=27.94 E-value=19 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCcEEEEEEe-CCeEEEEEecCcccCCCCc
Q 036428 100 GGPFGAVVVR-SDEVVVSCHNMVLKHTDPT 128 (138)
Q Consensus 100 ~~PVGAVIV~-dGeIIa~G~N~~~~~~DpT 128 (138)
..|+|.++++ +|+|+. +|+..+...+.
T Consensus 25 ~l~~Gii~lD~~g~I~~--~N~~~e~~sG~ 52 (125)
T 1nwz_A 25 GLAFGAIQLDGDGNILQ--YNAAEGDITGR 52 (125)
T ss_dssp TCSSEEEEEETTCBEEE--ECHHHHHHHCC
T ss_pred ccCceEEEECCCCEEEE--EHHHHHHHhCC
Confidence 4899999998 899998 88765543333
No 34
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=27.37 E-value=31 Score=27.27 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEEeCCeEEEEEecCc------ccCCCCcchH
Q 036428 104 GAVVVRSDEVVVSCHNMV------LKHTDPTAHA 131 (138)
Q Consensus 104 GAVIV~dGeIIa~G~N~~------~~~~DpTaHA 131 (138)
||||+++|+|++.|.--. ....=+|+|.
T Consensus 136 GAvII~~~rI~aA~~~LPls~~~~i~~~lGTRHR 169 (205)
T 2fb5_A 136 GAVLVKNNHIVSAANILPLTKSTEVDPELGTRHR 169 (205)
T ss_dssp SEEEEETTEEEEEEEBCCCCCCTTSCTTCCHHHH
T ss_pred cEEEEECCEEEEEEEEecCCCCCCcCccccHHHH
Confidence 999999999999976542 2233467774
No 35
>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}
Probab=21.72 E-value=71 Score=24.74 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=16.0
Q ss_pred EEEEEeCCeEEEEEecCc
Q 036428 104 GAVVVRSDEVVVSCHNMV 121 (138)
Q Consensus 104 GAVIV~dGeIIa~G~N~~ 121 (138)
|.|+|+||+|.+.|.+..
T Consensus 52 gdV~I~dgrI~aVG~~~~ 69 (479)
T 3hpa_A 52 AGLYIEDNRIVAVGPSAE 69 (479)
T ss_dssp EEEEEETTEEEEEEEGGG
T ss_pred cEEEEECCEEEEEeCCcc
Confidence 899999999999998754
No 36
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=21.45 E-value=25 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=20.9
Q ss_pred CCcEEEEEEe-CCeEEEEEecCcccCCCCcc
Q 036428 100 GGPFGAVVVR-SDEVVVSCHNMVLKHTDPTA 129 (138)
Q Consensus 100 ~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTa 129 (138)
..|+|.++++ +|+|+. +|+..+...+..
T Consensus 30 ~l~~GiivlD~dg~I~~--~N~~~e~isG~s 58 (129)
T 1mzu_A 30 ALPVGAIQVDGSGVIHR--YNRTESRLSGRI 58 (129)
T ss_dssp GCSSEEEEEETTCBEEE--ECHHHHHHHCCC
T ss_pred ccCceEEEECCCCeEEE--EHHHHHHHhCCC
Confidence 4899999998 899998 887655443333
Done!