Query 036429
Match_columns 74
No_of_seqs 24 out of 26
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 12:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10937 DUF2638: Protein of u 98.0 1.2E-05 2.5E-10 54.6 5.1 24 50-73 86-112 (112)
2 PF13442 Cytochrome_CBB3: Cyto 60.0 13 0.00028 21.2 2.7 20 50-69 45-64 (67)
3 PF08920 SF3b1: Splicing facto 56.2 4.2 9E-05 28.8 0.2 13 57-69 83-96 (144)
4 COG0501 HtpX Zn-dependent prot 53.4 9 0.0002 27.1 1.6 11 59-69 151-161 (302)
5 PF07637 PSD5: Protein of unkn 50.1 15 0.00031 22.0 1.9 13 57-69 16-28 (64)
6 cd07321 Extradiol_Dioxygenase_ 48.2 14 0.00031 23.1 1.7 15 57-71 32-46 (77)
7 cd07921 PCA_45_Doxase_A_like S 47.1 13 0.00028 25.5 1.5 16 56-71 41-56 (106)
8 PF04604 L_biotic_typeA: Type- 46.6 14 0.00031 22.6 1.5 13 59-71 14-26 (51)
9 PF00034 Cytochrom_C: Cytochro 46.4 16 0.00034 20.2 1.6 11 59-69 74-84 (91)
10 cd07922 CarBa CarBa is the A s 41.7 17 0.00037 23.5 1.4 16 56-71 32-47 (81)
11 PF07966 A1_Propeptide: A1 Pro 39.2 7.2 0.00016 20.6 -0.6 10 8-17 2-11 (29)
12 cd07923 Gallate_dioxygenase_C 35.5 28 0.00062 23.3 1.7 15 57-71 34-48 (94)
13 PF14584 DUF4446: Protein of u 33.9 27 0.00059 24.6 1.5 12 58-69 137-148 (151)
14 PRK12795 fliM flagellar motor 32.1 30 0.00065 27.6 1.6 12 58-69 56-67 (388)
15 COG5227 SMT3 Ubiquitin-like pr 30.0 30 0.00065 23.9 1.2 23 51-73 76-101 (103)
16 PF08708 PriCT_1: Primase C te 29.3 44 0.00096 19.5 1.7 13 57-69 50-62 (71)
17 PF07746 LigA: Aromatic-ring-o 28.2 45 0.00098 21.6 1.7 15 57-71 27-41 (88)
18 COG4974 XerD Site-specific rec 28.1 50 0.0011 26.2 2.2 21 50-70 103-125 (300)
19 PF09424 YqeY: Yqey-like prote 28.0 38 0.00082 23.4 1.4 16 52-69 85-100 (143)
20 CHL00183 petJ cytochrome c553; 27.9 67 0.0015 20.0 2.4 20 50-69 78-97 (108)
21 PF05391 Lsm_interact: Lsm int 27.9 83 0.0018 16.2 2.3 18 54-71 4-21 (21)
22 smart00738 NGN In Spt5p, this 26.5 41 0.00089 20.4 1.3 15 56-70 91-105 (106)
23 cd00799 INT_Cre Cre recombinas 25.1 63 0.0014 22.2 2.1 14 56-69 91-104 (287)
24 PRK13622 psbV cytochrome c-550 24.3 64 0.0014 23.8 2.1 15 55-69 138-152 (180)
25 PRK13697 cytochrome c6; Provis 23.5 1E+02 0.0022 19.0 2.7 18 52-69 82-99 (111)
26 KOG4849 mRNA cleavage factor I 23.5 56 0.0012 27.6 1.8 21 50-70 347-367 (498)
27 KOG0574 STE20-like serine/thre 22.0 59 0.0013 27.4 1.7 16 55-70 121-136 (502)
28 PRK03982 heat shock protein Ht 21.8 61 0.0013 24.0 1.6 10 60-69 120-129 (288)
29 PRK09570 rpoH DNA-directed RNA 21.8 66 0.0014 20.9 1.6 20 50-69 8-27 (79)
30 PF11829 DUF3349: Protein of u 21.7 72 0.0016 21.3 1.8 10 60-69 36-45 (96)
31 PF01191 RNA_pol_Rpb5_C: RNA p 21.7 37 0.0008 21.6 0.4 20 50-69 5-24 (74)
32 PF11341 DUF3143: Protein of u 21.6 74 0.0016 20.0 1.7 14 59-72 50-63 (63)
33 PF12162 STAT1_TAZ2bind: STAT1 21.6 67 0.0014 16.9 1.3 15 54-68 4-18 (23)
34 PF04369 Lactococcin: Lactococ 21.4 52 0.0011 20.7 1.0 15 58-72 8-22 (60)
35 PRK03072 heat shock protein Ht 21.0 64 0.0014 24.2 1.6 11 59-69 121-131 (288)
36 PF04695 Pex14_N: Peroxisomal 20.8 62 0.0013 21.8 1.4 12 58-69 33-44 (136)
37 PF12065 DUF3545: Protein of u 20.3 57 0.0012 20.4 1.0 13 54-69 22-34 (59)
38 PF00784 MyTH4: MyTH4 domain; 20.3 69 0.0015 20.4 1.4 14 55-68 100-113 (114)
39 PF07128 DUF1380: Protein of u 20.1 71 0.0015 22.8 1.6 12 59-70 42-53 (139)
No 1
>PF10937 DUF2638: Protein of unknown function (DUF2638); InterPro: IPR020373 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36 [, , ].
Probab=98.03 E-value=1.2e-05 Score=54.61 Aligned_cols=24 Identities=54% Similarity=0.631 Sum_probs=20.5
Q ss_pred cCCCCCC---cCCCCHHHHHHHHhcCC
Q 036429 50 KASLQPK---RIPPSNEEIEAILLGGC 73 (74)
Q Consensus 50 ~as~~Pk---R~p~s~~EieaI~lGG~ 73 (74)
+.+.+|. |.||+++|||+|+.||+
T Consensus 86 ~~~eLP~Rfrr~p~se~EiE~InsGGA 112 (112)
T PF10937_consen 86 DRSELPARFRRKPISEEEIEAINSGGA 112 (112)
T ss_pred eHHHcCHhHccCCCCHHHHHHHHcCCC
Confidence 5666776 67999999999999995
No 2
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=59.95 E-value=13 Score=21.15 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=15.3
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
.-..++....||++||++|+
T Consensus 45 ~~~Mp~~~~~ls~~e~~~l~ 64 (67)
T PF13442_consen 45 RGGMPPFGGQLSDEEIEALA 64 (67)
T ss_dssp BTTBSCTTTTSTHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHH
Confidence 34566666689999999986
No 3
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=56.21 E-value=4.2 Score=28.76 Aligned_cols=13 Identities=46% Similarity=0.833 Sum_probs=9.4
Q ss_pred cC-CCCHHHHHHHH
Q 036429 57 RI-PPSNEEIEAIL 69 (74)
Q Consensus 57 R~-p~s~~EieaI~ 69 (74)
|- ||||||+|+||
T Consensus 83 RNrpLTDEELD~mL 96 (144)
T PF08920_consen 83 RNRPLTDEELDAML 96 (144)
T ss_dssp CTS-S-HHHHHHTS
T ss_pred ccCcCCHHHHHHhC
Confidence 54 99999999987
No 4
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=53.36 E-value=9 Score=27.10 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=10.1
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
-|++||||||+
T Consensus 151 ~l~~dEl~aVl 161 (302)
T COG0501 151 LLNDDELEAVL 161 (302)
T ss_pred hCCHHHHHHHH
Confidence 68999999997
No 5
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=50.13 E-value=15 Score=22.01 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=11.5
Q ss_pred cCCCCHHHHHHHH
Q 036429 57 RIPPSNEEIEAIL 69 (74)
Q Consensus 57 R~p~s~~EieaI~ 69 (74)
|-|++++|++.++
T Consensus 16 RRp~~~~e~~~~~ 28 (64)
T PF07637_consen 16 RRPLTDEEVDRYL 28 (64)
T ss_pred CCCCCHHHHHHHH
Confidence 8899999999875
No 6
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=48.17 E-value=14 Score=23.06 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.4
Q ss_pred cCCCCHHHHHHHHhc
Q 036429 57 RIPPSNEEIEAILLG 71 (74)
Q Consensus 57 R~p~s~~EieaI~lG 71 (74)
+-.|++||++||+-+
T Consensus 32 ~~~Lt~eE~~al~~r 46 (77)
T cd07321 32 EYGLTPEEKAALLAR 46 (77)
T ss_pred HcCCCHHHHHHHHcC
Confidence 447999999999865
No 7
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=47.12 E-value=13 Score=25.46 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.0
Q ss_pred CcCCCCHHHHHHHHhc
Q 036429 56 KRIPPSNEEIEAILLG 71 (74)
Q Consensus 56 kR~p~s~~EieaI~lG 71 (74)
++-+||+||++||+.+
T Consensus 41 ~~~gLTeEe~~AV~~r 56 (106)
T cd07921 41 DKFGLTEEQKQAVLDR 56 (106)
T ss_pred HHcCCCHHHHHHHHhC
Confidence 3568999999999864
No 8
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=46.65 E-value=14 Score=22.55 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHhc
Q 036429 59 PPSNEEIEAILLG 71 (74)
Q Consensus 59 p~s~~EieaI~lG 71 (74)
.|+++|+|.|+=|
T Consensus 14 evs~eELd~ilGg 26 (51)
T PF04604_consen 14 EVSDEELDQILGG 26 (51)
T ss_pred hcCHHHHHHHhCC
Confidence 5899999999876
No 9
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=46.38 E-value=16 Score=20.21 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=9.7
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.|+++||++|+
T Consensus 74 ~ls~~e~~~l~ 84 (91)
T PF00034_consen 74 ILSDEEIADLA 84 (91)
T ss_dssp TSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 59999999986
No 10
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=41.73 E-value=17 Score=23.48 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.1
Q ss_pred CcCCCCHHHHHHHHhc
Q 036429 56 KRIPPSNEEIEAILLG 71 (74)
Q Consensus 56 kR~p~s~~EieaI~lG 71 (74)
++--||+||++||.-|
T Consensus 32 ~~~gLt~eE~~aL~~~ 47 (81)
T cd07922 32 EEYGLTPAERAALREG 47 (81)
T ss_pred HHcCCCHHHHHHHHcc
Confidence 3456999999999876
No 11
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=39.19 E-value=7.2 Score=20.63 Aligned_cols=10 Identities=50% Similarity=0.670 Sum_probs=6.0
Q ss_pred ccCCcccCCC
Q 036429 8 KRIPRIKFPQ 17 (74)
Q Consensus 8 kRIPlIKFP~ 17 (74)
-||||-||+.
T Consensus 2 ~rIPL~K~kS 11 (29)
T PF07966_consen 2 VRIPLKKFKS 11 (29)
T ss_dssp EEEEEEE---
T ss_pred EEEeccCCch
Confidence 4899999875
No 12
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=35.53 E-value=28 Score=23.29 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=11.7
Q ss_pred cCCCCHHHHHHHHhc
Q 036429 57 RIPPSNEEIEAILLG 71 (74)
Q Consensus 57 R~p~s~~EieaI~lG 71 (74)
+-+||+||++||+-+
T Consensus 34 e~gLt~Ee~~av~~r 48 (94)
T cd07923 34 EAGLTEEERTLIRNR 48 (94)
T ss_pred HcCCCHHHHHHHHcc
Confidence 347999999998743
No 13
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=33.93 E-value=27 Score=24.55 Aligned_cols=12 Identities=50% Similarity=0.523 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
-+||+||.|||-
T Consensus 137 ~~LS~EE~eal~ 148 (151)
T PF14584_consen 137 YPLSEEEKEALE 148 (151)
T ss_pred ccCCHHHHHHHH
Confidence 589999999985
No 14
>PRK12795 fliM flagellar motor switch protein FliM; Reviewed
Probab=32.11 E-value=30 Score=27.58 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
--||+|||||.|
T Consensus 56 ~vLSQ~EIDaLL 67 (388)
T PRK12795 56 RVLNQDEIDSLL 67 (388)
T ss_pred cccCHHHHHHHh
Confidence 579999999998
No 15
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=30 Score=23.92 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=15.8
Q ss_pred CCCCCCcCCC-CHHHHHHHH--hcCC
Q 036429 51 ASLQPKRIPP-SNEEIEAIL--LGGC 73 (74)
Q Consensus 51 as~~PkR~p~-s~~EieaI~--lGG~ 73 (74)
+.+-|--+-| -+|||||+. +|||
T Consensus 76 ~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 76 LDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred CCCChhhcCCccchHHHHHHHHhcCc
Confidence 4455555555 468999984 7888
No 16
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=29.27 E-value=44 Score=19.52 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=11.3
Q ss_pred cCCCCHHHHHHHH
Q 036429 57 RIPPSNEEIEAIL 69 (74)
Q Consensus 57 R~p~s~~EieaI~ 69 (74)
..||.++|++.|.
T Consensus 50 ~~PL~~~Ev~~i~ 62 (71)
T PF08708_consen 50 SPPLPESEVKAIA 62 (71)
T ss_pred CCCCCHHHHHHHH
Confidence 5699999999885
No 17
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=28.15 E-value=45 Score=21.65 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=10.3
Q ss_pred cCCCCHHHHHHHHhc
Q 036429 57 RIPPSNEEIEAILLG 71 (74)
Q Consensus 57 R~p~s~~EieaI~lG 71 (74)
+-.||+||.+||.-|
T Consensus 27 ~~~Lt~eer~av~~r 41 (88)
T PF07746_consen 27 EYGLTEEERQAVLDR 41 (88)
T ss_dssp CCT--HHHHHHHHCT
T ss_pred HcCCCHHHHHHHHcC
Confidence 457999999998754
No 18
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=28.07 E-value=50 Score=26.22 Aligned_cols=21 Identities=48% Similarity=0.719 Sum_probs=16.8
Q ss_pred cCCCCCCcCC--CCHHHHHHHHh
Q 036429 50 KASLQPKRIP--PSNEEIEAILL 70 (74)
Q Consensus 50 ~as~~PkR~p--~s~~EieaI~l 70 (74)
..-+.|+|+| |+++|||+++-
T Consensus 103 ~~PK~~~~LPk~Ls~~eve~Ll~ 125 (300)
T COG4974 103 DSPKLPKRLPKFLSEEEVEALLE 125 (300)
T ss_pred cCCCCCCcCCcccCHHHHHHHHh
Confidence 4567788886 99999999874
No 19
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=27.97 E-value=38 Score=23.36 Aligned_cols=16 Identities=56% Similarity=0.688 Sum_probs=8.9
Q ss_pred CCCCCcCCCCHHHHHHHH
Q 036429 52 SLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 52 s~~PkR~p~s~~EieaI~ 69 (74)
+..|+ .||+|||++|+
T Consensus 85 ~yLP~--~lseeEi~~~v 100 (143)
T PF09424_consen 85 EYLPK--QLSEEEIEAIV 100 (143)
T ss_dssp GGS-------HHHHHHHH
T ss_pred HhCcC--CCCHHHHHHHH
Confidence 34565 89999999987
No 20
>CHL00183 petJ cytochrome c553; Provisional
Probab=27.91 E-value=67 Score=20.04 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=14.7
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
+...++...-|++|||++|.
T Consensus 78 ~~~MP~f~~~Ls~~ei~~i~ 97 (108)
T CHL00183 78 KNAMPAFGGRLSDEDIEDVA 97 (108)
T ss_pred ccccccccCCCCHHHHHHHH
Confidence 44455555579999999985
No 21
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=27.91 E-value=83 Score=16.22 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=13.3
Q ss_pred CCCcCCCCHHHHHHHHhc
Q 036429 54 QPKRIPPSNEEIEAILLG 71 (74)
Q Consensus 54 ~PkR~p~s~~EieaI~lG 71 (74)
.+..+|+|+++..-.+|+
T Consensus 4 ~~~~~p~SNddFrkmfl~ 21 (21)
T PF05391_consen 4 ATTAKPKSNDDFRKMFLK 21 (21)
T ss_pred ccccCccchHHHHHHHcC
Confidence 456678999998776653
No 22
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=26.49 E-value=41 Score=20.39 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=11.9
Q ss_pred CcCCCCHHHHHHHHh
Q 036429 56 KRIPPSNEEIEAILL 70 (74)
Q Consensus 56 kR~p~s~~EieaI~l 70 (74)
+-.+++++|||.++-
T Consensus 91 ~p~~v~~~e~~~l~~ 105 (106)
T smart00738 91 KPTPVPDDEIEKILK 105 (106)
T ss_pred eeeECCHHHHHHHhh
Confidence 345789999999874
No 23
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.
Probab=25.12 E-value=63 Score=22.22 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=12.1
Q ss_pred CcCCCCHHHHHHHH
Q 036429 56 KRIPPSNEEIEAIL 69 (74)
Q Consensus 56 kR~p~s~~EieaI~ 69 (74)
++.+|++||+++|+
T Consensus 91 ~~~~lt~eei~~l~ 104 (287)
T cd00799 91 QALAILPEDLDKLR 104 (287)
T ss_pred CCCCCCHHHHHHHH
Confidence 45699999999987
No 24
>PRK13622 psbV cytochrome c-550; Provisional
Probab=24.25 E-value=64 Score=23.76 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=11.2
Q ss_pred CCcCCCCHHHHHHHH
Q 036429 55 PKRIPPSNEEIEAIL 69 (74)
Q Consensus 55 PkR~p~s~~EieaI~ 69 (74)
|+--.|+||||++|-
T Consensus 138 p~~~~LsdeEI~~VA 152 (180)
T PRK13622 138 PRLRNLTDEDLKLIA 152 (180)
T ss_pred ccccCCCHHHHHHHH
Confidence 333479999999874
No 25
>PRK13697 cytochrome c6; Provisional
Probab=23.53 E-value=1e+02 Score=18.96 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=13.2
Q ss_pred CCCCCcCCCCHHHHHHHH
Q 036429 52 SLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 52 s~~PkR~p~s~~EieaI~ 69 (74)
..++.--.++++||++|.
T Consensus 82 ~Mp~~~~~ls~~di~~l~ 99 (111)
T PRK13697 82 AMPAFKDRLSPDQIEDVA 99 (111)
T ss_pred CCCCCcCCCCHHHHHHHH
Confidence 345554568999999985
No 26
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=23.50 E-value=56 Score=27.60 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.0
Q ss_pred cCCCCCCcCCCCHHHHHHHHh
Q 036429 50 KASLQPKRIPPSNEEIEAILL 70 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~l 70 (74)
.-..-|.++||||.|.|-||-
T Consensus 347 ~r~~~p~~~plSeAEFEdiM~ 367 (498)
T KOG4849|consen 347 PRHVNPQMFPLSEAEFEDIMT 367 (498)
T ss_pred cccCCCCCccchHHHHHHHHh
Confidence 456678999999999999985
No 27
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=21.99 E-value=59 Score=27.36 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=13.7
Q ss_pred CCcCCCCHHHHHHHHh
Q 036429 55 PKRIPPSNEEIEAILL 70 (74)
Q Consensus 55 PkR~p~s~~EieaI~l 70 (74)
-.|.||+++||-+|+-
T Consensus 121 ~R~K~L~E~EIs~iL~ 136 (502)
T KOG0574|consen 121 ARRKPLSEQEISAVLR 136 (502)
T ss_pred HhcCCccHHHHHHHHH
Confidence 4688999999999973
No 28
>PRK03982 heat shock protein HtpX; Provisional
Probab=21.76 E-value=61 Score=23.98 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=9.1
Q ss_pred CCHHHHHHHH
Q 036429 60 PSNEEIEAIL 69 (74)
Q Consensus 60 ~s~~EieaI~ 69 (74)
+++|||+||+
T Consensus 120 l~~~El~AVl 129 (288)
T PRK03982 120 LNEDELEGVI 129 (288)
T ss_pred CCHHHHHHHH
Confidence 6899999997
No 29
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=21.76 E-value=66 Score=20.85 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.3
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
+-.+.||-..|++||.+.++
T Consensus 8 ~H~lVPkH~iLs~eE~~~lL 27 (79)
T PRK09570 8 DHELVPEHEILSEEEAKKLL 27 (79)
T ss_pred cccccCCeEECCHHHHHHHH
Confidence 34678999999999999886
No 30
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=21.69 E-value=72 Score=21.31 Aligned_cols=10 Identities=10% Similarity=0.424 Sum_probs=7.9
Q ss_pred CCHHHHHHHH
Q 036429 60 PSNEEIEAIL 69 (74)
Q Consensus 60 ~s~~EieaI~ 69 (74)
||+|||..|.
T Consensus 36 Ltd~ev~~Va 45 (96)
T PF11829_consen 36 LTDDEVAEVA 45 (96)
T ss_dssp S-HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999875
No 31
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=21.67 E-value=37 Score=21.65 Aligned_cols=20 Identities=40% Similarity=0.419 Sum_probs=15.3
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
+-.+.||-.-|++||.+.++
T Consensus 5 ~H~lVPkH~ils~eE~~~lL 24 (74)
T PF01191_consen 5 KHELVPKHEILSEEEKKELL 24 (74)
T ss_dssp SSTTC-EEEEE-HHHHHHHH
T ss_pred cceecCCeEEcCHHHHHHHH
Confidence 34688999999999999986
No 32
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=21.63 E-value=74 Score=20.01 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHhcC
Q 036429 59 PPSNEEIEAILLGG 72 (74)
Q Consensus 59 p~s~~EieaI~lGG 72 (74)
-||-++||+.+++|
T Consensus 50 sLSR~DvE~Ai~~G 63 (63)
T PF11341_consen 50 SLSREDVEAAIFSG 63 (63)
T ss_pred cCCHHHHHHHHhcC
Confidence 48999999999887
No 33
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=21.62 E-value=67 Score=16.94 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=7.3
Q ss_pred CCCcCCCCHHHHHHH
Q 036429 54 QPKRIPPSNEEIEAI 68 (74)
Q Consensus 54 ~PkR~p~s~~EieaI 68 (74)
|-.=.|||.||.+++
T Consensus 4 qdnmmPMSPddy~~l 18 (23)
T PF12162_consen 4 QDNMMPMSPDDYDEL 18 (23)
T ss_dssp -TS---S-HHHHHHH
T ss_pred hhcccCCCHHHHHHH
Confidence 333469999998764
No 34
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=21.44 E-value=52 Score=20.72 Aligned_cols=15 Identities=40% Similarity=0.364 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHhcC
Q 036429 58 IPPSNEEIEAILLGG 72 (74)
Q Consensus 58 ~p~s~~EieaI~lGG 72 (74)
.-||+||.+-|+=||
T Consensus 8 ~~~sdeeL~~i~GG~ 22 (60)
T PF04369_consen 8 NILSDEELSKINGGG 22 (60)
T ss_pred eecCHHHHhhccCCc
Confidence 358999999988664
No 35
>PRK03072 heat shock protein HtpX; Provisional
Probab=20.97 E-value=64 Score=24.15 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=9.5
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
-+++||++||+
T Consensus 121 ~l~~~El~aVl 131 (288)
T PRK03072 121 ILNERELRGVL 131 (288)
T ss_pred hCCHHHHHHHH
Confidence 46899999997
No 36
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.85 E-value=62 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=8.0
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
+-|++||||..+
T Consensus 33 KGLt~~EI~~al 44 (136)
T PF04695_consen 33 KGLTEEEIDEAL 44 (136)
T ss_dssp CT--HHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999999765
No 37
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=20.32 E-value=57 Score=20.42 Aligned_cols=13 Identities=54% Similarity=0.445 Sum_probs=9.2
Q ss_pred CCCcCCCCHHHHHHHH
Q 036429 54 QPKRIPPSNEEIEAIL 69 (74)
Q Consensus 54 ~PkR~p~s~~EieaI~ 69 (74)
+-||. =+|||||-
T Consensus 22 ~~KRK---WREIEAik 34 (59)
T PF12065_consen 22 PKKRK---WREIEAIK 34 (59)
T ss_pred ccchh---HHHHHHHH
Confidence 45554 58999984
No 38
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=20.29 E-value=69 Score=20.43 Aligned_cols=14 Identities=64% Similarity=1.106 Sum_probs=7.8
Q ss_pred CCcCCCCHHHHHHH
Q 036429 55 PKRIPPSNEEIEAI 68 (74)
Q Consensus 55 PkR~p~s~~EieaI 68 (74)
+.+.+.|..|||||
T Consensus 100 ~R~~~Ps~~Ei~a~ 113 (114)
T PF00784_consen 100 PRKFPPSRLEIEAI 113 (114)
T ss_dssp --SS---HHHHHHH
T ss_pred cCCCCcCHHHHHhh
Confidence 44569999999997
No 39
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.07 E-value=71 Score=22.84 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHh
Q 036429 59 PPSNEEIEAILL 70 (74)
Q Consensus 59 p~s~~EieaI~l 70 (74)
-+|++|+++||-
T Consensus 42 ~lTd~E~~aVL~ 53 (139)
T PF07128_consen 42 NLTDDEARAVLA 53 (139)
T ss_pred CCCHHHHHHHHH
Confidence 479999999983
Done!