Query 036429
Match_columns 74
No_of_seqs 24 out of 26
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 21:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ab9_A Pro-SFTI-1; protein, be 78.0 0.98 3.4E-05 24.5 1.4 14 6-19 17-30 (31)
2 2fho_A Spliceosomal protein SF 70.5 1.4 4.8E-05 25.7 0.9 17 54-70 15-32 (47)
3 3lqv_P Splicing factor 3B subu 69.8 1.4 4.6E-05 25.0 0.7 15 58-72 21-35 (39)
4 3ph2_B Cytochrome C6; photosyn 64.4 6.3 0.00022 21.4 2.8 20 50-69 56-75 (86)
5 3cu4_A Cytochrome C family pro 63.9 6.9 0.00024 21.6 2.9 20 50-69 57-77 (85)
6 3dmi_A Cytochrome C6; electron 63.4 6.7 0.00023 21.5 2.8 20 50-69 57-76 (88)
7 1gks_A Cytochrome C551; haloph 63.0 6 0.00021 22.0 2.6 20 50-69 52-71 (78)
8 1cc5_A Cytochrome C5; electron 62.4 7 0.00024 22.4 2.8 21 49-69 55-77 (83)
9 3lpe_A Putative transcription 59.2 5.3 0.00018 24.4 2.0 11 59-69 80-90 (92)
10 1c6r_A Cytochrome C6; electron 57.6 9.7 0.00033 20.9 2.8 20 50-69 58-77 (89)
11 1cyi_A Cytochrome C6, cytochro 57.5 9.7 0.00033 21.1 2.8 20 50-69 57-76 (90)
12 3dr0_A Cytochrome C6; photosyn 57.3 8.9 0.0003 20.9 2.6 20 50-69 62-81 (93)
13 1ls9_A Cytochrome C6; omega lo 57.0 9.9 0.00034 21.1 2.8 20 50-69 60-79 (91)
14 1gdv_A Cytochrome C6; RED ALGA 56.4 11 0.00036 20.4 2.8 20 50-69 55-74 (85)
15 1kx2_A Mono-heme C-type cytoch 53.9 8.5 0.00029 21.5 2.2 20 50-69 53-74 (81)
16 1ayg_A Cytochrome C-552; elect 53.5 12 0.00041 20.5 2.7 15 53-69 59-73 (80)
17 1f1f_A Cytochrome C6; heme, pr 53.0 13 0.00044 20.3 2.8 19 51-69 60-78 (89)
18 2zxy_A Cytochrome C552, cytoch 52.5 7.3 0.00025 21.1 1.7 12 58-69 69-80 (87)
19 2exv_A Cytochrome C-551; alpha 48.2 17 0.00057 19.7 2.7 11 59-69 65-75 (82)
20 1a56_A C-551, ferricytochrome 48.2 12 0.00041 20.5 2.1 17 52-69 58-74 (81)
21 1c75_A Cytochrome C-553; heme, 47.9 15 0.00051 19.7 2.5 16 52-69 49-64 (71)
22 1c53_A Cytochrome C553; electr 46.1 10 0.00034 20.9 1.6 12 58-69 62-73 (79)
23 1nz8_A Transcription antitermi 45.9 9.7 0.00033 23.7 1.7 15 56-70 99-113 (119)
24 1cch_A Cytochrome C551; electr 45.8 19 0.00065 19.4 2.7 11 59-69 65-75 (82)
25 2zon_G Cytochrome C551; nitrit 45.8 13 0.00045 20.5 2.1 18 52-69 61-79 (87)
26 1htr_P Progastricsin (Pro segm 45.4 4.2 0.00014 20.5 -0.1 12 6-17 1-12 (43)
27 1tzs_P Activation peptide from 45.0 3.1 0.0001 20.0 -0.6 12 6-17 2-13 (35)
28 3dp5_A OMCF, cytochrome C fami 44.4 21 0.00071 20.8 2.9 20 50-69 71-91 (99)
29 1cno_A Cytochrome C552; electr 39.7 15 0.00051 20.4 1.7 12 58-69 65-76 (87)
30 1wve_C 4-cresol dehydrogenase 38.5 29 0.001 19.1 2.8 18 52-69 49-67 (80)
31 2d0s_A Cytochrome C, cytochrom 38.0 23 0.00077 19.2 2.2 16 53-69 57-72 (79)
32 3vcm_P Prorenin; aspartic prot 36.5 7.1 0.00024 20.9 -0.1 13 5-17 6-18 (43)
33 1b4u_A LIGA, LIGB, protocatech 35.8 16 0.00056 24.9 1.7 15 57-71 63-77 (139)
34 1w2l_A Cytochrome oxidase subu 35.6 19 0.00065 20.0 1.7 13 57-69 80-92 (99)
35 2zzs_A Cytochrome C554; C-type 34.2 20 0.00069 20.3 1.7 12 58-69 85-96 (103)
36 2ce0_A Cytochrome C6; chloropl 34.1 18 0.00061 20.4 1.4 12 58-69 77-88 (105)
37 2l4d_A SCO1/SENC family protei 33.5 21 0.00072 20.2 1.7 11 59-69 80-90 (110)
38 1hlb_A Hemoglobin (deoxy); oxy 31.0 38 0.0013 21.1 2.7 21 49-69 2-22 (158)
39 4ayb_H DNA-directed RNA polyme 30.4 20 0.00067 22.3 1.2 20 50-69 13-32 (84)
40 3cqb_A Probable protease HTPX 29.4 25 0.00087 21.4 1.6 11 60-70 78-88 (107)
41 1mz4_A Cytochrome C550; PSII a 28.8 27 0.00093 21.1 1.7 11 59-69 106-116 (137)
42 1f1c_A Cytochrome C549; dimeri 28.7 28 0.00095 20.4 1.7 12 58-69 103-114 (129)
43 2oug_A Transcriptional activat 27.7 25 0.00085 22.5 1.4 14 57-70 85-98 (162)
44 3cp5_A Cytochrome C; electron 25.5 35 0.0012 19.9 1.7 12 58-69 103-114 (124)
45 1ywy_A Hypothetical protein PA 25.0 34 0.0012 21.5 1.6 23 51-73 41-63 (74)
46 1h1o_A Cytochrome C-552; elect 25.0 34 0.0012 21.2 1.7 11 59-69 167-177 (183)
47 1h32_B Cytochrome C, SOXX; ele 24.4 63 0.0022 19.4 2.8 12 58-69 119-130 (138)
48 1e29_A Cytochrome C549; electr 23.6 38 0.0013 21.0 1.7 11 59-69 106-116 (135)
49 3o0r_C Nitric oxide reductase 23.4 39 0.0013 20.5 1.7 10 60-69 117-126 (146)
50 2ahq_A Sigma-54, RNA polymeras 23.4 56 0.0019 19.8 2.4 17 53-69 31-47 (76)
51 1ccr_A Cytochrome C; electron 23.3 40 0.0014 19.5 1.7 11 59-69 94-104 (112)
52 3ff5_A PEX14P, peroxisomal bio 23.3 41 0.0014 19.6 1.7 12 58-69 40-51 (54)
53 1m70_A Cytochrome C4; electron 23.2 39 0.0013 21.0 1.7 11 59-69 173-183 (190)
54 1c52_A Cytochrome-C552; electr 22.7 40 0.0014 20.4 1.6 15 54-69 70-84 (131)
55 2blf_B SORB, sulfite\:cytochro 22.3 47 0.0016 19.1 1.8 12 58-69 63-74 (81)
56 3nkh_A Integrase; alpha-fold, 22.3 56 0.0019 20.7 2.3 16 54-69 20-35 (244)
57 2m0n_A Putative uncharacterize 22.2 45 0.0015 22.1 1.9 10 60-69 41-50 (112)
58 2w9k_A Cytochrome C, cytochrom 21.9 45 0.0015 19.4 1.7 11 59-69 96-106 (114)
59 1w5c_T Cytochrome C-550; photo 21.9 43 0.0015 21.0 1.7 12 58-69 131-142 (163)
60 3u85_B Histone-lysine N-methyl 21.6 40 0.0014 16.7 1.2 12 12-23 2-13 (21)
61 2lky_A Uncharacterized protein 20.6 54 0.0018 21.7 2.0 12 58-69 39-50 (112)
62 3ol3_A Putative uncharacterize 20.4 55 0.0019 21.4 2.0 10 60-69 44-53 (107)
No 1
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=78.04 E-value=0.98 Score=24.47 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=11.6
Q ss_pred ccccCCcccCCCCC
Q 036429 6 ALKRIPRIKFPQRH 19 (74)
Q Consensus 6 a~kRIPlIKFP~Rh 19 (74)
.-|.||-|+||+-+
T Consensus 17 ctksippicfpdgr 30 (31)
T 2ab9_A 17 CTKSIPPICFPDGR 30 (31)
T ss_dssp CCSSSSCSSSSCCC
T ss_pred ecccCCCcccCCCC
Confidence 45889999999864
No 2
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.54 E-value=1.4 Score=25.74 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=13.3
Q ss_pred CCCcC-CCCHHHHHHHHh
Q 036429 54 QPKRI-PPSNEEIEAILL 70 (74)
Q Consensus 54 ~PkR~-p~s~~EieaI~l 70 (74)
...|. |||+||+|+|+=
T Consensus 15 i~~rnrpltDEeLD~~LP 32 (47)
T 2fho_A 15 IDERNRPLSDEELDAMFP 32 (47)
T ss_dssp CCCCCCCSCTTHHHHHSC
T ss_pred cccccCCCCHHHHHHhCC
Confidence 44454 999999999974
No 3
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=69.84 E-value=1.4 Score=25.05 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHhcC
Q 036429 58 IPPSNEEIEAILLGG 72 (74)
Q Consensus 58 ~p~s~~EieaI~lGG 72 (74)
.|||+||+|+++=.|
T Consensus 21 rpltDEeLD~mLP~G 35 (39)
T 3lqv_P 21 RPLSDEELDAMFPEG 35 (39)
T ss_dssp CCCCHHHHHHTCCSS
T ss_pred CCCCHHHHHHhCCCC
Confidence 399999999987654
No 4
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=64.38 E-value=6.3 Score=21.41 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.2
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++-...||++||++|.
T Consensus 56 ~~~Mp~~~~~ls~~ei~~l~ 75 (86)
T 3ph2_B 56 KAGMPAFKGRLTDDQIAAVA 75 (86)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred CCCCCCcccCCCHHHHHHHH
Confidence 34556665689999999986
No 5
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=63.85 E-value=6.9 Score=21.62 Aligned_cols=20 Identities=5% Similarity=-0.192 Sum_probs=14.5
Q ss_pred cCCCCCCcC-CCCHHHHHHHH
Q 036429 50 KASLQPKRI-PPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~-p~s~~EieaI~ 69 (74)
....++-.. .||++||++|.
T Consensus 57 ~~~Mp~~~~~~ls~~ei~~l~ 77 (85)
T 3cu4_A 57 GPGMPAFGEAMIPPADALKIG 77 (85)
T ss_dssp CTTSCCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHH
Confidence 334555555 79999999986
No 6
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=63.44 E-value=6.7 Score=21.49 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=14.9
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++....||++||++|.
T Consensus 57 ~~~Mp~~~~~ls~~ei~~l~ 76 (88)
T 3dmi_A 57 KNAMPAFGGRLSDEEIANVA 76 (88)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred cCCCCCcCCCCCHHHHHHHH
Confidence 34455655579999999985
No 7
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=62.99 E-value=6 Score=22.00 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=15.0
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++.-..||++||++|.
T Consensus 52 ~~~Mp~~~~~Lsd~ei~~l~ 71 (78)
T 1gks_A 52 KGAMPAYDGRADREDLVKAI 71 (78)
T ss_dssp BTTBCCCBTTBCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHH
Confidence 44566665679999999985
No 8
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=62.40 E-value=7 Score=22.37 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=15.5
Q ss_pred ccCCCCCCcC--CCCHHHHHHHH
Q 036429 49 GKASLQPKRI--PPSNEEIEAIL 69 (74)
Q Consensus 49 g~as~~PkR~--p~s~~EieaI~ 69 (74)
|....++... .||+|||++|.
T Consensus 55 G~~~MP~~~~~~~Lsd~ei~~v~ 77 (83)
T 1cc5_A 55 GLNAMPPKGTCADCSDDELKAAI 77 (83)
T ss_dssp CBTTBCSSSSCSSCCHHHHHHHH
T ss_pred CccCCCCCCCCCCCCHHHHHHHH
Confidence 3445666654 69999999986
No 9
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=59.25 E-value=5.3 Score=24.38 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=10.5
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
||+++|||.|+
T Consensus 80 pl~~~Ev~~il 90 (92)
T 3lpe_A 80 TIAIEEIEPLL 90 (92)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHh
Confidence 99999999987
No 10
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=57.64 E-value=9.7 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.0
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++-...||++||++|+
T Consensus 58 ~~~Mp~~~~~ls~~ei~~l~ 77 (89)
T 1c6r_A 58 KGAMPAWSGTLDDDEIAAVA 77 (89)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHH
Confidence 44456655679999999986
No 11
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=57.47 E-value=9.7 Score=21.05 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=14.7
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++-...||++||++|+
T Consensus 57 ~~~Mp~~~~~ls~~ei~~l~ 76 (90)
T 1cyi_A 57 KGAMPAWADRLSEEEIQAVA 76 (90)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred CCCCCcccccCCHHHHHHHH
Confidence 34455555579999999986
No 12
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=57.27 E-value=8.9 Score=20.93 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=14.5
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++-...||++||++|+
T Consensus 62 ~~~Mp~~~~~ls~~ei~~l~ 81 (93)
T 3dr0_A 62 QGAMPAFGGRLSDADIANVA 81 (93)
T ss_dssp BTTBCCCBTTBCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHH
Confidence 33455554679999999986
No 13
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=57.01 E-value=9.9 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.6
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++-...||++||++|.
T Consensus 60 ~~~Mp~~~~~ls~~ei~~l~ 79 (91)
T 1ls9_A 60 KGAMPAWADRLDEDDIEAVS 79 (91)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred cCCCcchhhhCCHHHHHHHH
Confidence 34455555579999999985
No 14
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=56.38 E-value=11 Score=20.41 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=14.3
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
....++-...||++||++|.
T Consensus 55 ~~~Mp~~~~~ls~~ei~~l~ 74 (85)
T 1gdv_A 55 KNAMPAFGGRLVDEDIEDAA 74 (85)
T ss_dssp BTTBCCCTTTSCHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHH
Confidence 34455544579999999985
No 15
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=53.88 E-value=8.5 Score=21.50 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=13.9
Q ss_pred cCCCCCCc--CCCCHHHHHHHH
Q 036429 50 KASLQPKR--IPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR--~p~s~~EieaI~ 69 (74)
....++.. ..||++||++|.
T Consensus 53 ~~~Mp~~~~~~~Lsd~ei~~l~ 74 (81)
T 1kx2_A 53 LNAMPPGGMCTDCTDEDYKAAI 74 (81)
T ss_dssp CTTSCGGGGCSSCCHHHHHHHH
T ss_pred cCCCCCCCCCCCCCHHHHHHHH
Confidence 33455543 379999999985
No 16
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=53.46 E-value=12 Score=20.53 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=11.8
Q ss_pred CCCCcCCCCHHHHHHHH
Q 036429 53 LQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 53 ~~PkR~p~s~~EieaI~ 69 (74)
.++. .||++||++|.
T Consensus 59 Mp~~--~Lsd~ei~~l~ 73 (80)
T 1ayg_A 59 MPPQ--NVTDAEAKQLA 73 (80)
T ss_dssp BCCC--CCCHHHHHHHH
T ss_pred CCCC--CCCHHHHHHHH
Confidence 4443 79999999985
No 17
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=53.03 E-value=13 Score=20.33 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=13.9
Q ss_pred CCCCCCcCCCCHHHHHHHH
Q 036429 51 ASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 51 as~~PkR~p~s~~EieaI~ 69 (74)
...++-...||++||++|+
T Consensus 60 ~~Mp~~~~~ls~~ei~~l~ 78 (89)
T 1f1f_A 60 NAMPGFNGRLSPLQIEDVA 78 (89)
T ss_dssp TTBCCCTTTSCHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHH
Confidence 3455555579999999986
No 18
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=52.50 E-value=7.3 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||++||++|.
T Consensus 69 ~~ls~~ei~~l~ 80 (87)
T 2zxy_A 69 KGLSDAELKALA 80 (87)
T ss_dssp GGCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 368999999986
No 19
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=48.19 E-value=17 Score=19.69 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=10.0
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.||++||++|.
T Consensus 65 ~ls~~ei~~l~ 75 (82)
T 2exv_A 65 AVSDDEAQTLA 75 (82)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999999986
No 20
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=48.17 E-value=12 Score=20.47 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=12.7
Q ss_pred CCCCCcCCCCHHHHHHHH
Q 036429 52 SLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 52 s~~PkR~p~s~~EieaI~ 69 (74)
..++- ..||++||++|.
T Consensus 58 ~Mp~~-~~Ls~~ei~~l~ 74 (81)
T 1a56_A 58 PMPPN-VNVSDADAKALA 74 (81)
T ss_dssp CBCSC-CSSSSHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHH
Confidence 34444 579999999985
No 21
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=47.85 E-value=15 Score=19.70 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=12.4
Q ss_pred CCCCCcCCCCHHHHHHHH
Q 036429 52 SLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 52 s~~PkR~p~s~~EieaI~ 69 (74)
..++ ..|+++||++|.
T Consensus 49 ~Mp~--~~ls~~ei~~l~ 64 (71)
T 1c75_A 49 GMPG--GIAKGAEAEAVA 64 (71)
T ss_dssp TBCS--CSSCHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHH
Confidence 3444 679999999985
No 22
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=46.15 E-value=10 Score=20.88 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||++||++|.
T Consensus 62 ~~Ls~~ei~~l~ 73 (79)
T 1c53_A 62 KRYSDEEMKAMA 73 (79)
T ss_pred hhCCHHHHHHHH
Confidence 359999999985
No 23
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=45.93 E-value=9.7 Score=23.66 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.3
Q ss_pred CcCCCCHHHHHHHHh
Q 036429 56 KRIPPSNEEIEAILL 70 (74)
Q Consensus 56 kR~p~s~~EieaI~l 70 (74)
+=+||+++||+.|+.
T Consensus 99 ~P~pi~~~ev~~i~~ 113 (119)
T 1nz8_A 99 RPVPLSPDEVRHILE 113 (119)
T ss_dssp SSCBCCHHHHHHHHH
T ss_pred EEeECCHHHHHHHHH
Confidence 347999999999873
No 24
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=45.83 E-value=19 Score=19.36 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=10.0
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.|+++||++|.
T Consensus 65 ~ls~~ei~~l~ 75 (82)
T 1cch_A 65 PVTEEEAKILA 75 (82)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999999986
No 25
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=45.83 E-value=13 Score=20.49 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=13.1
Q ss_pred CCCCCcC-CCCHHHHHHHH
Q 036429 52 SLQPKRI-PPSNEEIEAIL 69 (74)
Q Consensus 52 s~~PkR~-p~s~~EieaI~ 69 (74)
..++-.. .||++||++|+
T Consensus 61 ~Mp~~~~~~ls~~ei~~l~ 79 (87)
T 2zon_G 61 AMPPRGGTAADEATLRAAV 79 (87)
T ss_dssp TBCGGGGCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH
Confidence 3444444 79999999986
No 26
>1htr_P Progastricsin (Pro segment); aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_P
Probab=45.45 E-value=4.2 Score=20.45 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=9.4
Q ss_pred ccccCCcccCCC
Q 036429 6 ALKRIPRIKFPQ 17 (74)
Q Consensus 6 a~kRIPlIKFP~ 17 (74)
|+.||||-|++.
T Consensus 1 ~l~RIpL~K~~s 12 (43)
T 1htr_P 1 AVVKVPLKKFKS 12 (43)
T ss_dssp CCEEEEEEECCC
T ss_pred CeEEEeeeEcch
Confidence 456899999875
No 27
>1tzs_P Activation peptide from cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=45.00 E-value=3.1 Score=20.03 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.6
Q ss_pred ccccCCcccCCC
Q 036429 6 ALKRIPRIKFPQ 17 (74)
Q Consensus 6 a~kRIPlIKFP~ 17 (74)
++.||||-|++.
T Consensus 2 ~l~rIpL~K~~s 13 (35)
T 1tzs_P 2 SLHRVPLRRHPS 13 (35)
T ss_pred cEEEEEeEEchH
Confidence 567999999865
No 28
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=44.40 E-value=21 Score=20.79 Aligned_cols=20 Identities=5% Similarity=-0.192 Sum_probs=14.6
Q ss_pred cCCCCCCcC-CCCHHHHHHHH
Q 036429 50 KASLQPKRI-PPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~-p~s~~EieaI~ 69 (74)
....++-.. -||++||++|.
T Consensus 71 ~~~MP~~~~~~Lsd~ei~~l~ 91 (99)
T 3dp5_A 71 GPGMPAFGEAMIPPADALKIG 91 (99)
T ss_dssp CTTSCCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHH
Confidence 444555554 69999999985
No 29
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=39.73 E-value=15 Score=20.43 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||++||++|+
T Consensus 65 ~~ls~~ei~~l~ 76 (87)
T 1cno_A 65 TALSDADIANLA 76 (87)
T ss_dssp TTCCHHHHHHHH
T ss_pred hhCCHHHHHHHH
Confidence 369999999986
No 30
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=38.46 E-value=29 Score=19.14 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=12.9
Q ss_pred CCCCCc-CCCCHHHHHHHH
Q 036429 52 SLQPKR-IPPSNEEIEAIL 69 (74)
Q Consensus 52 s~~PkR-~p~s~~EieaI~ 69 (74)
..++-. ..||++||++|.
T Consensus 49 ~Mp~~~~~~ls~~ei~~l~ 67 (80)
T 1wve_C 49 AMPAFPASYVDDESLTQVA 67 (80)
T ss_dssp TBCCCCTTTSCHHHHHHHH
T ss_pred CCCCCcccCCCHHHHHHHH
Confidence 344443 469999999985
No 31
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=38.05 E-value=23 Score=19.21 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=12.0
Q ss_pred CCCCcCCCCHHHHHHHH
Q 036429 53 LQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 53 ~~PkR~p~s~~EieaI~ 69 (74)
.++- ..||++||++|.
T Consensus 57 Mp~~-~~Ls~~ei~~l~ 72 (79)
T 2d0s_A 57 MPPH-PQVAEADIEKIV 72 (79)
T ss_dssp BCCC-TTSCHHHHHHHH
T ss_pred CCCC-CCCCHHHHHHHH
Confidence 4443 479999999985
No 32
>3vcm_P Prorenin; aspartic proteases, hydrolase; HET: NAG; 2.93A {Homo sapiens}
Probab=36.47 E-value=7.1 Score=20.85 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.3
Q ss_pred cccccCCcccCCC
Q 036429 5 QALKRIPRIKFPQ 17 (74)
Q Consensus 5 ~a~kRIPlIKFP~ 17 (74)
.++-||||-||+.
T Consensus 6 ~~l~RIPL~k~kS 18 (43)
T 3vcm_P 6 TTFKRIFLKRMPS 18 (43)
T ss_dssp CCCEEEEEEECCC
T ss_pred cceeEEeeeeccc
Confidence 3567999999975
No 33
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=35.83 E-value=16 Score=24.92 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=12.9
Q ss_pred cCCCCHHHHHHHHhc
Q 036429 57 RIPPSNEEIEAILLG 71 (74)
Q Consensus 57 R~p~s~~EieaI~lG 71 (74)
+-+||+||++||+-|
T Consensus 63 ~~gLTeEEr~AV~~r 77 (139)
T 1b4u_A 63 EWNLTPAAKAAVLAR 77 (139)
T ss_dssp TTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHcC
Confidence 568999999999865
No 34
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=35.58 E-value=19 Score=20.01 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=10.6
Q ss_pred cCCCCHHHHHHHH
Q 036429 57 RIPPSNEEIEAIL 69 (74)
Q Consensus 57 R~p~s~~EieaI~ 69 (74)
...|+++||++|+
T Consensus 80 ~~~ls~~ei~~l~ 92 (99)
T 1w2l_A 80 YASLSEREVAALI 92 (99)
T ss_dssp GGGCCHHHHHHHH
T ss_pred cccCCHHHHHHHH
Confidence 3459999999986
No 35
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=34.16 E-value=20 Score=20.33 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||++||++|.
T Consensus 85 ~~ls~~ei~~l~ 96 (103)
T 2zzs_A 85 SLLSDDDIANLA 96 (103)
T ss_dssp TTCCHHHHHHHH
T ss_pred hhCCHHHHHHHH
Confidence 359999999985
No 36
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=34.08 E-value=18 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||++||++|+
T Consensus 77 ~~ls~~ei~~l~ 88 (105)
T 2ce0_A 77 PRLQDEEIKLLA 88 (105)
T ss_dssp CCBCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999999986
No 37
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=33.51 E-value=21 Score=20.19 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=9.7
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.|+++||++|+
T Consensus 80 ~Ls~~ei~~l~ 90 (110)
T 2l4d_A 80 RLGDAEVSALI 90 (110)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 49999999986
No 38
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=31.01 E-value=38 Score=21.14 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=16.1
Q ss_pred ccCCCCCCcCCCCHHHHHHHH
Q 036429 49 GKASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 49 g~as~~PkR~p~s~~EieaI~ 69 (74)
|.+..+-.++.||++|+++|.
T Consensus 2 ~~~~~~~~~~~lt~~~~~~i~ 22 (158)
T 1hlb_A 2 GGTLAIQAQGDLTLAQKKIVR 22 (158)
T ss_dssp CCTTCSCCCSCSCHHHHHHHH
T ss_pred CcccCCCCCCCCCHHHHHHHH
Confidence 455556667799999999884
No 39
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=30.43 E-value=20 Score=22.34 Aligned_cols=20 Identities=35% Similarity=0.203 Sum_probs=17.6
Q ss_pred cCCCCCCcCCCCHHHHHHHH
Q 036429 50 KASLQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 50 ~as~~PkR~p~s~~EieaI~ 69 (74)
+-.+.||-..|++||.+.++
T Consensus 13 ~H~LVPkH~vLs~eE~~~ll 32 (84)
T 4ayb_H 13 IHYLVPKHEVLSIDEAYKIL 32 (84)
T ss_dssp SSSSCCEEEECCHHHHHHHH
T ss_pred ccccCCCeEECCHHHHHHHH
Confidence 46789999999999999886
No 40
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=29.36 E-value=25 Score=21.45 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=9.4
Q ss_pred CCHHHHHHHHh
Q 036429 60 PSNEEIEAILL 70 (74)
Q Consensus 60 ~s~~EieaI~l 70 (74)
|++||+++|+.
T Consensus 78 l~~~El~aVla 88 (107)
T 3cqb_A 78 MTRDEAEAVLA 88 (107)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 59999999973
No 41
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=28.79 E-value=27 Score=21.12 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=9.7
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.||++||++|.
T Consensus 106 ~Lsd~ei~ala 116 (137)
T 1mz4_A 106 NLTEKDLVAIA 116 (137)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 49999999985
No 42
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=28.74 E-value=28 Score=20.40 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||++||++|+
T Consensus 103 ~~Ls~~ei~~l~ 114 (129)
T 1f1c_A 103 RNISEDDLYNVA 114 (129)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 369999999986
No 43
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=27.70 E-value=25 Score=22.48 Aligned_cols=14 Identities=7% Similarity=0.003 Sum_probs=11.8
Q ss_pred cCCCCHHHHHHHHh
Q 036429 57 RIPPSNEEIEAILL 70 (74)
Q Consensus 57 R~p~s~~EieaI~l 70 (74)
=+||+++||+.|+.
T Consensus 85 p~pi~~~ei~~i~~ 98 (162)
T 2oug_A 85 PAIVPSAVIHQLSV 98 (162)
T ss_dssp SCCCCCHHHHHHHH
T ss_pred eeEcCHHHHHHHHh
Confidence 46899999999864
No 44
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=25.46 E-value=35 Score=19.90 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..|+++||++|.
T Consensus 103 ~~Ls~~ei~~l~ 114 (124)
T 3cp5_A 103 MALSEEQARAIL 114 (124)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 379999999985
No 45
>1ywy_A Hypothetical protein PA2021; PAT85, NESG, GFT-structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Pseudomonas aeruginosa} SCOP: b.55.2.1
Probab=25.02 E-value=34 Score=21.53 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=19.0
Q ss_pred CCCCCCcCCCCHHHHHHHHhcCC
Q 036429 51 ASLQPKRIPPSNEEIEAILLGGC 73 (74)
Q Consensus 51 as~~PkR~p~s~~EieaI~lGG~ 73 (74)
+-+.-+|.+++|+|-|+..+-|.
T Consensus 41 ~~l~g~Rv~ItEaEAdaLtVAGA 63 (74)
T 1ywy_A 41 LYIDGKRLHISEEDAQRLVVAGA 63 (74)
T ss_dssp EEETTCCEECCHHHHHHHHHTTC
T ss_pred EEEcCcEEeccHHHhhheeeccc
Confidence 34556899999999999988774
No 46
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=24.97 E-value=34 Score=21.15 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=9.6
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.||++||++|.
T Consensus 167 ~Ls~~ei~~l~ 177 (183)
T 1h1o_A 167 NITVAQMKDVA 177 (183)
T ss_dssp TCCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 58999999985
No 47
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=24.45 E-value=63 Score=19.44 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..|+++||++|+
T Consensus 119 ~~Ls~~ei~~l~ 130 (138)
T 1h32_B 119 PLMTAGQIEDVV 130 (138)
T ss_dssp CSSCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 369999999986
No 48
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=23.60 E-value=38 Score=21.01 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=9.6
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.||++||++|.
T Consensus 106 ~Lsd~ei~~la 116 (135)
T 1e29_A 106 NYTEDDIFDVA 116 (135)
T ss_dssp TCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 48999999985
No 49
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=23.45 E-value=39 Score=20.48 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=9.1
Q ss_pred CCHHHHHHHH
Q 036429 60 PSNEEIEAIL 69 (74)
Q Consensus 60 ~s~~EieaI~ 69 (74)
|+++||++|.
T Consensus 117 Ls~~ei~~l~ 126 (146)
T 3o0r_C 117 LSEGQVDDLA 126 (146)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 8999999985
No 50
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=23.36 E-value=56 Score=19.83 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=13.9
Q ss_pred CCCCcCCCCHHHHHHHH
Q 036429 53 LQPKRIPPSNEEIEAIL 69 (74)
Q Consensus 53 ~~PkR~p~s~~EieaI~ 69 (74)
.-.++.||||++|--+|
T Consensus 31 ~Ed~~kPlSD~~I~~~L 47 (76)
T 2ahq_A 31 NEDKRKPYSDQEIANIL 47 (76)
T ss_dssp GCCSSSCCCHHHHHHHH
T ss_pred hcCCCCCCCHHHHHHHH
Confidence 34678999999998776
No 51
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=23.28 E-value=40 Score=19.45 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=9.1
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
-++++||++|+
T Consensus 94 ~ls~~ei~~l~ 104 (112)
T 1ccr_A 94 LXKPQERADLI 104 (112)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35999999986
No 52
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=23.28 E-value=41 Score=19.62 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
.-|+++|||..+
T Consensus 40 KGLt~~EI~~Al 51 (54)
T 3ff5_A 40 KGLTDEEIDLAF 51 (54)
T ss_dssp TTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 468999999765
No 53
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=23.18 E-value=39 Score=21.03 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=9.7
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
.||++||++|.
T Consensus 173 ~Ls~~ei~~l~ 183 (190)
T 1m70_A 173 KLSNKDIEALS 183 (190)
T ss_dssp TCCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 58999999986
No 54
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=22.66 E-value=40 Score=20.38 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=11.6
Q ss_pred CCCcCCCCHHHHHHHH
Q 036429 54 QPKRIPPSNEEIEAIL 69 (74)
Q Consensus 54 ~PkR~p~s~~EieaI~ 69 (74)
++-. .||++||++|+
T Consensus 70 P~~~-~Lsd~ei~~l~ 84 (131)
T 1c52_A 70 SSFA-QLKDEEIAAVL 84 (131)
T ss_dssp CCCT-TSCHHHHHHHH
T ss_pred CCcc-cCCHHHHHHHH
Confidence 3334 79999999986
No 55
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=22.32 E-value=47 Score=19.08 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
.++++||++.|+
T Consensus 63 ~~ls~~e~~~I~ 74 (81)
T 2blf_B 63 APVDEADAKAIA 74 (81)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 479999999886
No 56
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=22.26 E-value=56 Score=20.69 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=12.5
Q ss_pred CCCcCCCCHHHHHHHH
Q 036429 54 QPKRIPPSNEEIEAIL 69 (74)
Q Consensus 54 ~PkR~p~s~~EieaI~ 69 (74)
.+++.++++||++.|+
T Consensus 20 ~~~~~~lt~~e~~~l~ 35 (244)
T 3nkh_A 20 FQSNAYLELNEIESII 35 (244)
T ss_dssp -CCSCCCCHHHHHHHH
T ss_pred ccccccCCHHHHHHHH
Confidence 3456699999999886
No 57
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=22.24 E-value=45 Score=22.10 Aligned_cols=10 Identities=10% Similarity=0.504 Sum_probs=9.0
Q ss_pred CCHHHHHHHH
Q 036429 60 PSNEEIEAIL 69 (74)
Q Consensus 60 ~s~~EieaI~ 69 (74)
||+|||..|.
T Consensus 41 LtdeEV~~Va 50 (112)
T 2m0n_A 41 LTEEQVQEVV 50 (112)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999885
No 58
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=21.91 E-value=45 Score=19.40 Aligned_cols=11 Identities=9% Similarity=0.144 Sum_probs=9.3
Q ss_pred CCCHHHHHHHH
Q 036429 59 PPSNEEIEAIL 69 (74)
Q Consensus 59 p~s~~EieaI~ 69 (74)
-++++||++|+
T Consensus 96 ~ls~~ei~~l~ 106 (114)
T 2w9k_A 96 MKKPQERADVI 106 (114)
T ss_dssp CCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 47999999986
No 59
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=21.86 E-value=43 Score=21.03 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||+|||++|.
T Consensus 131 ~~Lsd~ei~~la 142 (163)
T 1w5c_T 131 RNLTEKDLVAIA 142 (163)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 369999999985
No 60
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=21.58 E-value=40 Score=16.73 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=8.8
Q ss_pred cccCCCCCCCCC
Q 036429 12 RIKFPQRHPKSS 23 (74)
Q Consensus 12 lIKFP~Rh~k~s 23 (74)
+-+||-|-+.++
T Consensus 2 rwrfparpg~s~ 13 (21)
T 3u85_B 2 RWRFPARPGTTG 13 (26)
T ss_pred ccccccCCCccc
Confidence 468999987643
No 61
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=20.65 E-value=54 Score=21.70 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHH
Q 036429 58 IPPSNEEIEAIL 69 (74)
Q Consensus 58 ~p~s~~EieaI~ 69 (74)
..||+|||+.|.
T Consensus 39 r~Ltdeev~~Va 50 (112)
T 2lky_A 39 RRLTNDEIKAIA 50 (112)
T ss_dssp TTCCHHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 469999999885
No 62
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=20.36 E-value=55 Score=21.40 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=8.8
Q ss_pred CCHHHHHHHH
Q 036429 60 PSNEEIEAIL 69 (74)
Q Consensus 60 ~s~~EieaI~ 69 (74)
||+|||..|.
T Consensus 44 Ltddev~~Va 53 (107)
T 3ol3_A 44 LTEDEVVRAA 53 (107)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999998875
Done!