Query 036431
Match_columns 163
No_of_seqs 123 out of 143
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 21:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9d_A Diaphanous protein homo 99.2 9.3E-11 3.2E-15 100.4 8.9 97 16-112 191-314 (340)
2 1ux5_A BNI1 protein; structura 99.0 4E-10 1.4E-14 98.3 8.3 97 17-113 273-401 (411)
3 2j1d_G DAAM1, disheveled-assoc 99.0 1.2E-09 4.2E-14 97.7 8.8 96 17-112 274-397 (483)
4 3obv_E Protein diaphanous homo 98.9 3.9E-09 1.3E-13 94.4 8.5 95 17-111 263-384 (457)
5 4eah_A Formin-like protein 3, 98.3 8.3E-07 2.8E-11 78.1 7.5 90 16-112 268-382 (402)
6 3rh3_A Uncharacterized DUF3829 65.1 9.1 0.00031 32.5 5.1 36 67-102 137-180 (264)
7 2l5g_B Putative uncharacterize 48.9 15 0.0005 23.3 2.8 17 98-114 6-22 (42)
8 3iee_A Putative exported prote 44.6 32 0.0011 29.3 5.1 25 67-91 145-169 (270)
9 2hfi_A Hypothetical protein YP 39.6 41 0.0014 25.5 4.6 51 36-86 2-53 (131)
10 3r2c_J Protein NUSE, 30S ribos 30.5 31 0.0011 24.1 2.5 17 101-117 16-32 (83)
11 4akv_A Sorting nexin-33; trans 28.2 98 0.0033 26.5 5.7 59 22-80 229-291 (386)
12 3d3c_J 30S ribosomal protein S 25.4 44 0.0015 23.4 2.5 17 101-117 21-37 (87)
13 2cxy_A BAF250B subunit, HBAF25 23.6 15 0.0005 27.0 -0.3 42 67-109 23-72 (125)
No 1
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=99.15 E-value=9.3e-11 Score=100.37 Aligned_cols=97 Identities=18% Similarity=0.390 Sum_probs=84.6
Q ss_pred hhhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhcc--ccccCchHHHHHHHHHHHHHhhcc-------
Q 036431 16 LPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCA--SSERGGFLKEMKAFLEDCEEELKL------- 86 (163)
Q Consensus 16 L~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~--~~e~~~F~~~M~~Fl~~AEeEi~~------- 86 (163)
.+-+.++..||.+|.+||.++++.|...+..|..++..++.-+.... .++.++|...|..|++.|++++..
T Consensus 191 ~p~l~~f~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~ 270 (340)
T 1v9d_A 191 HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSN 270 (340)
T ss_dssp CCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhccchhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999998777653 234578999999999999987753
Q ss_pred ------------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431 87 ------------------EHPLQLFVIVKEFLSMVDRVCADISR 112 (163)
Q Consensus 87 ------------------~~plriFvIVRDFL~mLD~vCkEv~~ 112 (163)
..|-.+|.|+++|+.+++++|+|..+
T Consensus 271 ~~~~~~~l~~yfged~~~~~~~~fF~~~~~F~~~f~~a~~en~~ 314 (340)
T 1v9d_A 271 METLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK 314 (340)
T ss_dssp HHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999864
No 2
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=99.04 E-value=4e-10 Score=98.35 Aligned_cols=97 Identities=13% Similarity=0.259 Sum_probs=84.1
Q ss_pred hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc------cccCchHHHHHHHHHHHHHhhcc----
Q 036431 17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS------SERGGFLKEMKAFLEDCEEELKL---- 86 (163)
Q Consensus 17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~------~e~~~F~~~M~~Fl~~AEeEi~~---- 86 (163)
+-+.++..||.+|.+||.+|++.|...|..|..|+.+++.-+..... ...+.|...|..|++.|+.++..
T Consensus 273 p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~ 352 (411)
T 1ux5_A 273 PSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDE 352 (411)
T ss_dssp GGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999999998875421 23478999999999999987753
Q ss_pred -------------------c---CCceeehhHHHHHHhHHHHHHHHHHH
Q 036431 87 -------------------E---HPLQLFVIVKEFLSMVDRVCADISRN 113 (163)
Q Consensus 87 -------------------~---~plriFvIVRDFL~mLD~vCkEv~~~ 113 (163)
. +|-.+|.++++|+.+++++|+|+.+.
T Consensus 353 ~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~ 401 (411)
T 1ux5_A 353 VKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAA 401 (411)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 46789999999999999999998763
No 3
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=98.98 E-value=1.2e-09 Score=97.75 Aligned_cols=96 Identities=19% Similarity=0.277 Sum_probs=83.3
Q ss_pred hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc---cccCchHHHHHHHHHHHHHhhcc-------
Q 036431 17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS---SERGGFLKEMKAFLEDCEEELKL------- 86 (163)
Q Consensus 17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~---~e~~~F~~~M~~Fl~~AEeEi~~------- 86 (163)
+-+.++..||.+|.+||.++++.|...|..|..|+.+++.-+..... ..++.|...|..|++.|+.++..
T Consensus 274 p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~ 353 (483)
T 2j1d_G 274 PSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAE 353 (483)
T ss_dssp GGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999987776532 23478999999999999988753
Q ss_pred ------------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431 87 ------------------EHPLQLFVIVKEFLSMVDRVCADISR 112 (163)
Q Consensus 87 ------------------~~plriFvIVRDFL~mLD~vCkEv~~ 112 (163)
..|-.+|.|+.+|+.+++++|+|+.+
T Consensus 354 ~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~ 397 (483)
T 2j1d_G 354 AKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENEN 397 (483)
T ss_dssp HHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999853
No 4
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=98.88 E-value=3.9e-09 Score=94.44 Aligned_cols=95 Identities=18% Similarity=0.394 Sum_probs=83.0
Q ss_pred hhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccc--cccCchHHHHHHHHHHHHHhhcc--------
Q 036431 17 PAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCAS--SERGGFLKEMKAFLEDCEEELKL-------- 86 (163)
Q Consensus 17 ~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~--~e~~~F~~~M~~Fl~~AEeEi~~-------- 86 (163)
+-+.++..||.+|.+||.|+++.|...|.+|..++..++.-++.... +..+.|+..|..|++.|++++..
T Consensus 263 p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~ 342 (457)
T 3obv_E 263 PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNM 342 (457)
T ss_dssp GGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999988876532 23478999999999999988753
Q ss_pred -----------------cCCceeehhHHHHHHhHHHHHHHHH
Q 036431 87 -----------------EHPLQLFVIVKEFLSMVDRVCADIS 111 (163)
Q Consensus 87 -----------------~~plriFvIVRDFL~mLD~vCkEv~ 111 (163)
..|-.+|.|+.+|+.++.++|+|..
T Consensus 343 ~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~fkkA~~eN~ 384 (457)
T 3obv_E 343 ETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQ 384 (457)
T ss_dssp HHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999874
No 5
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=98.34 E-value=8.3e-07 Score=78.08 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=75.7
Q ss_pred hhhhhcCchhhhhhhHhhhcchhHHHHHHHHHhhhHHHHHHHHHhccccccCchHHHHHHHHHHHHHhhcc---------
Q 036431 16 LPAVEGLSNEFTNVKKAARIEHDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDCEEELKL--------- 86 (163)
Q Consensus 16 L~vVsgLssEL~NVKKAA~iD~d~L~~~vskL~~gl~ki~~ll~~~~~~e~~~F~~~M~~Fl~~AEeEi~~--------- 86 (163)
.+-+.++..||.+|.+||.++++.|...|.+|..|+..++.-+.. .+ ...|..|++.|++++..
T Consensus 268 ~p~l~~f~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l~~~~~e~~~--~d-----~~~l~~Fl~~a~~~~~~L~~~~~~~~ 340 (402)
T 4eah_A 268 YPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSI--HD-----NSVLRNFLSTNEGKLDKLQRDAKTAE 340 (402)
T ss_dssp CGGGGTCSTTCCSHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHT--TC-----CTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--cc-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999998753332 11 23799999999988754
Q ss_pred ----------------cCCceeehhHHHHHHhHHHHHHHHHH
Q 036431 87 ----------------EHPLQLFVIVKEFLSMVDRVCADISR 112 (163)
Q Consensus 87 ----------------~~plriFvIVRDFL~mLD~vCkEv~~ 112 (163)
..|-.+|.++.+|+.++.++|+|..+
T Consensus 341 ~~~~~l~~yFgedpk~~~~~~fF~~~~~F~~~fk~A~~en~~ 382 (402)
T 4eah_A 341 EAYNAVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQENEA 382 (402)
T ss_dssp HHHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668999999999999999999964
No 6
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=65.07 E-value=9.1 Score=32.53 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHhhcccCCce--------eehhHHHHHHh
Q 036431 67 GGFLKEMKAFLEDCEEELKLEHPLQ--------LFVIVKEFLSM 102 (163)
Q Consensus 67 ~~F~~~M~~Fl~~AEeEi~~~~plr--------iFvIVRDFL~m 102 (163)
.+-+.-|..|.++||+.+-.+|||+ +|..+.+|+..
T Consensus 137 ~~ifd~lsp~aeqAE~vlL~DhPLKeqIla~kkm~~~~~~~~~l 180 (264)
T 3rh3_A 137 QVIFDILSPLTEQAESELLADEPLKDQIMAMRKMSGTVQSIMNL 180 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999995 78888888864
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.86 E-value=15 Score=23.30 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.0
Q ss_pred HHHHhHHHHHHHHHHHh
Q 036431 98 EFLSMVDRVCADISRNL 114 (163)
Q Consensus 98 DFL~mLD~vCkEv~~~~ 114 (163)
|.|--+|+||+||.+.-
T Consensus 6 ~l~qkI~kVdrEI~Kte 22 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVE 22 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66788999999998743
No 8
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=44.62 E-value=32 Score=29.31 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHHhhcccCCce
Q 036431 67 GGFLKEMKAFLEDCEEELKLEHPLQ 91 (163)
Q Consensus 67 ~~F~~~M~~Fl~~AEeEi~~~~plr 91 (163)
.+-+..|..|.++||+++-.+|||+
T Consensus 145 ~~ifd~Lsp~aeqAE~~lL~DhPLK 169 (270)
T 3iee_A 145 QNIFDILSPFTEQAELVLLVDNPLK 169 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHhhHHHHHHHHHHHccCchH
Confidence 5789999999999999999999996
No 9
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=39.62 E-value=41 Score=25.49 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHhhhHHHHHHHHHhc-cccccCchHHHHHHHHHHHHHhhcc
Q 036431 36 EHDTFINTCSSLGSRVVEIRQLVTRC-ASSERGGFLKEMKAFLEDCEEELKL 86 (163)
Q Consensus 36 D~d~L~~~vskL~~gl~ki~~ll~~~-~~~e~~~F~~~M~~Fl~~AEeEi~~ 86 (163)
+.+.|...+.+|-.-+.++...-... ..+.+-.|+..|++|++...+.+..
T Consensus 2 ~~~~L~~lteqLi~~~~e~~~~y~~~ke~~~e~DF~~eVKPf~d~vd~~l~~ 53 (131)
T 2hfi_A 2 LSQTLLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAAR 53 (131)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHH
Confidence 44567777777777777766655444 3344578999999999998876643
No 10
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=30.49 E-value=31 Score=24.05 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHhhhc
Q 036431 101 SMVDRVCADISRNLQKK 117 (163)
Q Consensus 101 ~mLD~vCkEv~~~~q~~ 117 (163)
..||++|+++.+..++.
T Consensus 16 ~~Ld~~~~~Iv~~ak~~ 32 (83)
T 3r2c_J 16 RLLDQSVKQIIETVKRT 32 (83)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57999999999866554
No 11
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=28.18 E-value=98 Score=26.48 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=37.7
Q ss_pred CchhhhhhhHhhhcc----hhHHHHHHHHHhhhHHHHHHHHHhccccccCchHHHHHHHHHHH
Q 036431 22 LSNEFTNVKKAARIE----HDTFINTCSSLGSRVVEIRQLVTRCASSERGGFLKEMKAFLEDC 80 (163)
Q Consensus 22 LssEL~NVKKAA~iD----~d~L~~~vskL~~gl~ki~~ll~~~~~~e~~~F~~~M~~Fl~~A 80 (163)
|+.-|.+.=+|..++ ...|+..+++|+.-+.++.++...-+..+...|.+.++.|+...
T Consensus 229 l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll 291 (386)
T 4akv_A 229 LGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLL 291 (386)
T ss_dssp HHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544433 45788888888888888888776554444356666666666554
No 12
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=25.38 E-value=44 Score=23.43 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHhhhc
Q 036431 101 SMVDRVCADISRNLQKK 117 (163)
Q Consensus 101 ~mLD~vCkEv~~~~q~~ 117 (163)
..||++|+++.+..++.
T Consensus 21 ~~Ld~~~~~Iv~~ak~~ 37 (87)
T 3d3c_J 21 RLIDQATAEIVETAKRT 37 (87)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57999999998866554
No 13
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=23.60 E-value=15 Score=26.97 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHHHhhcc--------cCCceeehhHHHHHHhHHHHHHH
Q 036431 67 GGFLKEMKAFLEDCEEELKL--------EHPLQLFVIVKEFLSMVDRVCAD 109 (163)
Q Consensus 67 ~~F~~~M~~Fl~~AEeEi~~--------~~plriFvIVRDFL~mLD~vCkE 109 (163)
..|.+.+..|++.--..+.. =+.++||..|..+ +=.++||++
T Consensus 23 ~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~-GG~~~V~~~ 72 (125)
T 2cxy_A 23 KLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEI-GGLAQVNKN 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHH-TSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHc-CCHHHhccc
Confidence 46999999999876555522 4668999999885 667789864
Done!