Query 036432
Match_columns 81
No_of_seqs 216 out of 1013
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 12:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 99.8 2.6E-18 5.6E-23 117.1 6.9 76 1-78 423-498 (499)
2 TIGR01311 glycerol_kin glycero 99.7 2.8E-17 6.1E-22 113.2 7.4 74 1-76 420-493 (493)
3 PRK00047 glpK glycerol kinase; 99.7 8.5E-17 1.9E-21 110.9 7.2 75 1-77 424-498 (498)
4 PTZ00294 glycerol kinase-like 99.7 1.2E-16 2.7E-21 110.3 7.1 77 1-78 427-503 (504)
5 PLN02295 glycerol kinase 99.7 2E-16 4.4E-21 109.5 7.8 77 1-78 433-509 (512)
6 PRK10939 autoinducer-2 (AI-2) 99.6 5.8E-16 1.3E-20 107.3 6.8 76 1-77 430-506 (520)
7 TIGR01315 5C_CHO_kinase FGGY-f 99.6 1.4E-15 3.1E-20 105.9 6.6 75 1-76 464-540 (541)
8 TIGR01314 gntK_FGGY gluconate 99.6 1.6E-15 3.4E-20 104.8 6.2 74 1-76 422-496 (505)
9 PRK15027 xylulokinase; Provisi 99.6 7E-15 1.5E-19 101.2 6.6 74 1-76 407-482 (484)
10 TIGR01234 L-ribulokinase L-rib 99.6 8.4E-15 1.8E-19 101.9 6.8 75 1-76 457-533 (536)
11 PRK04123 ribulokinase; Provisi 99.5 1.5E-14 3.2E-19 100.8 6.7 73 1-73 460-533 (548)
12 TIGR01312 XylB D-xylulose kina 99.5 2.4E-14 5.3E-19 98.0 5.4 69 1-70 411-480 (481)
13 KOG2517 Ribulose kinase and re 99.4 2.4E-13 5.3E-18 94.0 5.5 76 1-79 435-512 (516)
14 PRK10640 rhaB rhamnulokinase; 99.3 4.5E-12 9.8E-17 87.3 5.1 68 1-71 396-465 (471)
15 PRK10331 L-fuculokinase; Provi 99.3 6.8E-12 1.5E-16 86.3 4.4 60 1-61 410-469 (470)
16 COG1069 AraB Ribulose kinase [ 99.1 2.3E-10 5E-15 79.5 5.3 73 1-74 452-526 (544)
17 TIGR02628 fuculo_kin_coli L-fu 99.1 1.6E-10 3.4E-15 79.5 4.4 52 1-53 414-465 (465)
18 COG1070 XylB Sugar (pentulose 98.9 2.2E-09 4.7E-14 74.7 5.8 74 1-76 422-497 (502)
19 TIGR02627 rhamnulo_kin rhamnul 98.4 1.8E-07 4E-12 64.3 2.5 37 1-38 408-444 (454)
20 PLN02669 xylulokinase 98.2 3.9E-06 8.4E-11 59.4 6.1 75 1-75 466-551 (556)
21 PF02782 FGGY_C: FGGY family o 98.2 4.7E-07 1E-11 55.6 1.2 29 1-29 170-198 (198)
22 KOG2531 Sugar (pentulose and h 96.6 0.0051 1.1E-07 43.2 4.7 72 1-72 463-543 (545)
23 COG1924 Activator of 2-hydroxy 89.0 0.26 5.7E-06 34.0 1.6 25 2-26 364-389 (396)
24 TIGR03286 methan_mark_15 putat 87.8 0.37 8E-06 33.5 1.7 24 2-25 377-401 (404)
25 PF03727 Hexokinase_2: Hexokin 87.8 0.39 8.4E-06 30.9 1.8 24 6-29 219-242 (243)
26 TIGR03192 benz_CoA_bzdQ benzoy 84.3 0.77 1.7E-05 30.7 1.8 25 2-26 261-287 (293)
27 PTZ00107 hexokinase; Provision 77.3 2.1 4.5E-05 30.4 2.1 25 5-29 437-461 (464)
28 PF11527 ARL2_Bind_BART: The A 75.5 1.8 3.9E-05 24.9 1.3 29 47-75 33-62 (121)
29 PLN02914 hexokinase 74.7 2.8 6E-05 30.0 2.2 24 6-29 465-488 (490)
30 KOG1369 Hexokinase [Carbohydra 73.3 2 4.3E-05 30.6 1.3 25 6-30 445-469 (474)
31 PLN02405 hexokinase 73.1 2.9 6.4E-05 29.9 2.1 24 6-29 467-490 (497)
32 PLN02362 hexokinase 67.0 5.2 0.00011 28.8 2.2 24 7-30 477-500 (509)
33 CHL00094 dnaK heat shock prote 65.8 3.8 8.3E-05 29.8 1.4 32 2-33 350-382 (621)
34 PLN02596 hexokinase-like 65.1 5.8 0.00013 28.4 2.2 23 7-29 463-485 (490)
35 PRK13317 pantothenate kinase; 59.5 9.8 0.00021 25.1 2.4 22 5-26 251-273 (277)
36 KOG1794 N-Acetylglucosamine ki 58.4 6.8 0.00015 26.6 1.5 23 9-31 298-320 (336)
37 PHA00456 hypothetical protein 56.5 13 0.00028 16.9 1.8 12 57-68 20-31 (34)
38 PRK13410 molecular chaperone D 56.0 11 0.00023 28.0 2.3 30 2-31 350-380 (668)
39 PTZ00186 heat shock 70 kDa pre 48.1 15 0.00032 27.3 2.0 29 2-30 375-404 (657)
40 PRK13928 rod shape-determining 39.4 15 0.00032 24.6 0.8 26 2-27 297-323 (336)
41 PF12656 G-patch_2: DExH-box s 37.2 21 0.00045 19.1 1.0 13 16-28 29-41 (77)
42 PF00012 HSP70: Hsp70 protein; 35.7 40 0.00087 24.1 2.6 28 3-30 351-379 (602)
43 TIGR02350 prok_dnaK chaperone 30.5 31 0.00067 25.0 1.3 29 3-31 347-376 (595)
44 cd06257 DnaJ DnaJ domain or J- 30.4 57 0.0012 15.2 2.0 27 47-73 25-53 (55)
45 PRK01433 hscA chaperone protei 30.2 47 0.001 24.4 2.2 27 3-29 331-358 (595)
46 PF07318 DUF1464: Protein of u 29.2 38 0.00083 23.4 1.5 33 2-34 286-323 (343)
47 PF07067 DUF1340: Protein of u 28.2 50 0.0011 21.1 1.8 54 27-80 77-133 (236)
48 PF09779 Ima1_N: Ima1 N-termin 28.0 82 0.0018 18.4 2.6 25 49-73 92-119 (131)
49 PRK00290 dnaK molecular chaper 27.6 46 0.001 24.4 1.8 28 3-30 349-377 (627)
50 PRK13755 putative mercury tran 26.5 39 0.00085 20.0 1.1 14 25-38 35-48 (139)
51 PLN03184 chloroplast Hsp70; Pr 25.3 53 0.0011 24.5 1.8 28 3-30 388-416 (673)
52 TIGR03281 methan_mark_12 putat 24.5 43 0.00093 22.9 1.1 23 3-26 288-310 (326)
53 PF14986 DUF4514: Domain of un 23.2 72 0.0016 16.0 1.5 11 16-26 26-36 (61)
54 PF02543 CmcH_NodU: Carbamoylt 22.9 91 0.002 21.4 2.5 19 13-31 199-217 (360)
55 TIGR00904 mreB cell shape dete 22.7 59 0.0013 21.6 1.5 25 2-26 301-326 (333)
56 COG5026 Hexokinase [Carbohydra 22.5 71 0.0015 23.0 1.9 23 7-29 438-460 (466)
57 PRK13927 rod shape-determining 22.5 70 0.0015 21.2 1.8 25 3-27 299-324 (334)
58 KOG0103 Molecular chaperones H 21.7 31 0.00067 26.1 0.0 27 1-27 354-381 (727)
59 TIGR01495 ETRAMP Plasmodium ri 21.5 81 0.0018 17.2 1.7 16 17-32 57-74 (85)
60 PF12029 DUF3516: Domain of un 21.5 1.1E+02 0.0023 22.1 2.6 49 14-68 181-229 (461)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=99.75 E-value=2.6e-18 Score=117.06 Aligned_cols=76 Identities=41% Similarity=0.716 Sum_probs=69.9
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHHHHHHHHHHHHHHHHHHhchhh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEEGRKKKAESWCRAVERTFNLAD 78 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~~ 78 (81)
|||||+||+||...|++|+|||++|++++|+|++.+++ .+.... .+.|+|.++....+++|..|++++++++.|.+
T Consensus 423 ADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el-~~~~~~-~~~f~p~m~~~~r~~~y~~W~~AV~rs~~~~~ 498 (499)
T COG0554 423 ADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDEL-AELWPL-DKEFEPGMDEEEREELYAGWKKAVKRSLGWRK 498 (499)
T ss_pred HHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHH-Hhhhcc-cceeCCCCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 79999999999999999999999999999999999998 555663 77999999988899999999999999999954
No 2
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=99.71 E-value=2.8e-17 Score=113.19 Aligned_cols=74 Identities=46% Similarity=0.788 Sum_probs=68.3
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHHHHHHHHHHHHHHHHHHhch
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEEGRKKKAESWCRAVERTFNL 76 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~ 76 (81)
|||||+||++++..|++++|||++|++++|.|.+++++ ..+.+. .++|+|++++..|+++|+.|+++++++++|
T Consensus 420 ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~~-~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~ 493 (493)
T TIGR01311 420 ADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALWRV-EKTFEPEMDEEEREARYAGWKEAVKRSLGW 493 (493)
T ss_pred HHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhcCC-CcEECCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999998886 777764 779999999877999999999999999988
No 3
>PRK00047 glpK glycerol kinase; Provisional
Probab=99.69 E-value=8.5e-17 Score=110.92 Aligned_cols=75 Identities=45% Similarity=0.772 Sum_probs=67.8
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHHHHHHHHHHHHHHHHHHhchh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEEGRKKKAESWCRAVERTFNLA 77 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~ 77 (81)
|||||+||++++..|++++|||++|++++|.+++++++ ..+.+. .++|+|++++..|+++|+.|+++|+++..|.
T Consensus 424 ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~~-~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~~ 498 (498)
T PRK00047 424 ADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQWKI-DRRFEPQMDEEEREKLYAGWKKAVKRTLAWA 498 (498)
T ss_pred HHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-HhhcCC-CeEECCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 79999999999999999999999999999999998876 666663 6789999998679999999999999998883
No 4
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=99.68 E-value=1.2e-16 Score=110.31 Aligned_cols=77 Identities=42% Similarity=0.647 Sum_probs=66.9
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHHHHHHHHHHHHHHHHHHhchhh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEEGRKKKAESWCRAVERTFNLAD 78 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~~ 78 (81)
|||||+||++++..|++++|||++|+.++|.+++++++ ..+.....++|+|++++..|+++|+.|+++|++++.|.+
T Consensus 427 Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~-~~~~~~~~~~~~P~~~~~~y~~~~~~~~~~~~~~~~~~~ 503 (504)
T PTZ00294 427 ADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEV-KKLIRRSNSTFSPQMSAEERKAIYKEWNKAVERSLKWAK 503 (504)
T ss_pred HHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHH-HHhccCCCcEECCCCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 79999999999999999999999999999999998876 444431256899999985599999999999999999853
No 5
>PLN02295 glycerol kinase
Probab=99.67 E-value=2e-16 Score=109.48 Aligned_cols=77 Identities=69% Similarity=1.157 Sum_probs=67.5
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHHHHHHHHHHHHHHHHHHhchhh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEEGRKKKAESWCRAVERTFNLAD 78 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~~ 78 (81)
|||||+||+++...|++++|||++|+++.|.|++.+++...+... .++|+|++++..|+++|++|+++|++++.|..
T Consensus 433 ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~-~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~~ 509 (512)
T PLN02295 433 ADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWKN-TTTFRPKLDEEERAKRYASWCKAVERSFDLAD 509 (512)
T ss_pred HHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccCC-CeEECCCCCHHHHHHHHHHHHHHHHHHhcchh
Confidence 799999999999999999999999999999998876652356653 67899999986699999999999999998854
No 6
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=99.64 E-value=5.8e-16 Score=107.33 Aligned_cols=76 Identities=29% Similarity=0.397 Sum_probs=66.7
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHH-HHHHHHHHHHHHHHHHhchh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEE-GRKKKAESWCRAVERTFNLA 77 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~-~y~~~y~~~~~~~~~~~~~~ 77 (81)
|||||+||++++..|++++|||++|++++|.|++++++...+.+. .++|+|++++. .|+++|++|+++|.++..+.
T Consensus 430 ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~-~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~~ 506 (520)
T PRK10939 430 ADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLAETGERLVRW-ERTFEPNPENHELYQEAKEKWQAVYADQLGLV 506 (520)
T ss_pred HHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHHHHHHHHccc-CceECcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999987764555553 67899999886 79999999999998877663
No 7
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=99.61 E-value=1.4e-15 Score=105.89 Aligned_cols=75 Identities=20% Similarity=0.098 Sum_probs=64.8
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHH--HHHHHHHHHHHHHHHHhch
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEE--GRKKKAESWCRAVERTFNL 76 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~--~y~~~y~~~~~~~~~~~~~ 76 (81)
|||||+||+++...|++++|||++|++++|.+.+++++...+.+. .++|+|++++. .|+++|++|+++++++..+
T Consensus 464 ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~-~~~~~P~~~~~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 464 ADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKP-GKTVWPRGDPAKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccC-CcEEcCCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999987764556553 67899999875 5999999999999876543
No 8
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=99.60 E-value=1.6e-15 Score=104.83 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHH-HHHHHHHHHHHHHHHHhch
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEE-GRKKKAESWCRAVERTFNL 76 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~-~y~~~y~~~~~~~~~~~~~ 76 (81)
|||||+||++++..|++++|||++|++++|.+++++++ ..+... .++|+|++++. .|+++|+.|+++++++..+
T Consensus 422 Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~~~~~-~~~~~P~~~~~~~Y~~~y~~y~~~~~~~~~~ 496 (505)
T TIGR01314 422 SDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-STMVGT-TETHTPIEKNFEIYREISPIFINLSRSLLAE 496 (505)
T ss_pred HHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HHhcCC-CceECcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998876 666664 67899999886 7999999999999988764
No 9
>PRK15027 xylulokinase; Provisional
Probab=99.57 E-value=7e-15 Score=101.20 Aligned_cols=74 Identities=19% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCcCCCceecCCC-CchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHH-HHHHHHHHHHHHHHHHhch
Q 036432 1 ADLLGSPVIRPAD-KETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEE-GRKKKAESWCRAVERTFNL 76 (81)
Q Consensus 1 ADilg~~v~~~~~-~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~-~y~~~y~~~~~~~~~~~~~ 76 (81)
|||||+||+++.. .+++++|||++|++++|.+++++++ ..+.+. .++|+|++++. .|+++|+.|+++|.++..+
T Consensus 407 Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~-~~~~~~-~~~~~P~~~~~~~Y~~~~~~y~~~y~~~~~~ 482 (484)
T PRK15027 407 ADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIEL-LPQLPL-EQSHLPDAQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_pred HHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHH-HhhcCC-CceECCCHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 7999999976654 4588999999999999999998876 455553 67899999986 7999999999999887543
No 10
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=99.56 E-value=8.4e-15 Score=101.93 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccc-cccCceeecCCCHH-HHHHHHHHHHHHHHHHhch
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEW-AKTSTTFKPVLNEE-GRKKKAESWCRAVERTFNL 76 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~-~~~~~~~~P~~~~~-~y~~~y~~~~~~~~~~~~~ 76 (81)
|||||+||++++..|++++|||++|++++|.+++++++...+. . ..++|+|++++. .|+++|++|+++|++.-++
T Consensus 457 Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~-~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~ 533 (536)
T TIGR01234 457 ADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSA-VEKTLTPCSENAQRYEQLYARYQELAMSFGQY 533 (536)
T ss_pred HHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhcc-CCceECCChhHHHHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999877644453 3 266899999885 7999999999999885444
No 11
>PRK04123 ribulokinase; Provisional
Probab=99.54 E-value=1.5e-14 Score=100.81 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=62.2
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHH-HHHHHHHHHHHHHHHH
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEE-GRKKKAESWCRAVERT 73 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~-~y~~~y~~~~~~~~~~ 73 (81)
|||||+||+++...|++++|||++|+++.|.+++++++...+.....++|+|+++.. .|+++|++|+++++..
T Consensus 460 ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 460 ADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred HHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999987763444321245799999885 7999999999998765
No 12
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=99.51 E-value=2.4e-14 Score=97.99 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=60.7
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHH-HHHHHHHHHHHHH
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEE-GRKKKAESWCRAV 70 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~-~y~~~y~~~~~~~ 70 (81)
|||+|+||++++..|++++|||++|+.+.|.+++++++...+.+. .+.|+|++++. .|+++|++|++++
T Consensus 411 Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~~~~-~~~~~P~~~~~~~y~~~~~~~~~~~ 480 (481)
T TIGR01312 411 ADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQ-TESVLPIAENVEAYEELYERYKKLY 480 (481)
T ss_pred HHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhccCC-CceECCCHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999987764556653 67899999885 7999999999975
No 13
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.4e-13 Score=94.03 Aligned_cols=76 Identities=41% Similarity=0.626 Sum_probs=65.0
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhcc--CCCHHHHHhccccccCceeecCCCHHHHHHHHHHHHHHHHHHhchhh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGV--FKEEEIFASGEWAKTSTTFKPVLNEEGRKKKAESWCRAVERTFNLAD 78 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~--~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~~y~~~~~~~~~~~~~~~ 78 (81)
|||+|+||+++...|.+++|||++|+.+.|. |.+.+++ . +.. ..++|.|+.+...+...|+.|++++++.++|.+
T Consensus 435 ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~-~-~~~-~~~~~~P~~~~~~~~~ky~~w~~ave~~~~~~~ 511 (516)
T KOG2517|consen 435 ADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKA-S-LTG-VGKVFRPNIDDKLLDKKYQIWLKAVERQLGYRR 511 (516)
T ss_pred HHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHH-h-cCC-CcceecCCCCcHHHHHHHHHHHHHHHHHhhHHh
Confidence 7999999999999999999999999999999 4444444 2 344 367999999887889999999999999999965
Q ss_pred c
Q 036432 79 I 79 (81)
Q Consensus 79 ~ 79 (81)
+
T Consensus 512 ~ 512 (516)
T KOG2517|consen 512 I 512 (516)
T ss_pred h
Confidence 3
No 14
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=99.29 E-value=4.5e-12 Score=87.34 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccc--cCceeecCCCHHHHHHHHHHHHHHHH
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAK--TSTTFKPVLNEEGRKKKAESWCRAVE 71 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~--~~~~~~P~~~~~~y~~~y~~~~~~~~ 71 (81)
|||+|+||.+... |++++|||++|++++|.+++.+++ ..+... ..++|+|+++ ..+++.|.+|+++++
T Consensus 396 ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P~~~-~~~~~~~~~~~~~~~ 465 (471)
T PRK10640 396 ADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTPNPD-SEIARHVAQFQSLRQ 465 (471)
T ss_pred HHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcCCCh-HHHHHHHHHHHHHhc
Confidence 7999999988775 899999999999999999998877 666541 1468999987 456778888888765
No 15
>PRK10331 L-fuculokinase; Provisional
Probab=99.25 E-value=6.8e-12 Score=86.26 Aligned_cols=60 Identities=27% Similarity=0.249 Sum_probs=50.2
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHHHHHH
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEEGRKK 61 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~ 61 (81)
|||||+||++++..|++++|||++|++++|.|++++++...+... .++|+|++....|++
T Consensus 410 Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~~~-~~~~~P~~~~~~y~~ 469 (470)
T PRK10331 410 ANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMKYQ-YRYFYPQTEPEFIEE 469 (470)
T ss_pred HHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHhhc-ceeECCCccHhhhhc
Confidence 799999999999999999999999999999999987764556553 568999966556653
No 16
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=99.08 E-value=2.3e-10 Score=79.47 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=60.5
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCC-CHH-HHHHHHHHHHHHHHHHh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVL-NEE-GRKKKAESWCRAVERTF 74 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~-~~~-~y~~~y~~~~~~~~~~~ 74 (81)
||++|+||+++...+..+||+|++++++.|.+.++..+...|... .....|++ +.. .|+.+|++|+.++.-..
T Consensus 452 aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~-~~~~~~~~~~~~~~y~~lyr~y~~l~~~~~ 526 (544)
T COG1069 452 ADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSA-VEKTLPPPPERAARYERLYRRYLQLHDDAE 526 (544)
T ss_pred HHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcc-cceecCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999987776777664 44455555 554 79999999998876544
No 17
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=99.07 E-value=1.6e-10 Score=79.54 Aligned_cols=52 Identities=29% Similarity=0.324 Sum_probs=45.2
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecC
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPV 53 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~ 53 (81)
|||||+||++++..|++++|||++|++++|.|++++++...+... .++|+|+
T Consensus 414 Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~~~-~~~~~P~ 465 (465)
T TIGR02628 414 ANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQ-YRYFYPQ 465 (465)
T ss_pred hhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhhcc-ceeeCCC
Confidence 799999999999999999999999999999999988774555553 5689985
No 18
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.94 E-value=2.2e-09 Score=74.69 Aligned_cols=74 Identities=24% Similarity=0.258 Sum_probs=58.7
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCC-HHHHHhccccccCceeecCCCH-HHHHHHHHHHHHHHHHHhch
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKE-EEIFASGEWAKTSTTFKPVLNE-EGRKKKAESWCRAVERTFNL 76 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~-~~~~~~~~~~~~~~~~~P~~~~-~~y~~~y~~~~~~~~~~~~~ 76 (81)
||++|+||.++...|++++|+|++++.+.+.+.+ .+++ .+.... ..++.|++++ +.|++.|+.|+++|.++...
T Consensus 422 Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~p~~~~~~~y~~~~~~~~~~y~~~~~~ 497 (502)
T COG1070 422 ADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGA-LKAVVD-ARRIIPDPERAAAYQELYERYRALYQALLAL 497 (502)
T ss_pred HHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHH-hhcccc-ccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999888888888766543 3444 333332 5689999988 48999999999999987754
No 19
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=98.40 E-value=1.8e-07 Score=64.29 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=33.8
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccCCCHHHH
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVFKEEEIF 38 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~~~~~~~ 38 (81)
|||||+||.+.. .|++++|||++|++++|.+++++++
T Consensus 408 ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~ 444 (454)
T TIGR02627 408 ADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAF 444 (454)
T ss_pred HHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHH
Confidence 799999998776 7799999999999999999998776
No 20
>PLN02669 xylulokinase
Probab=98.23 E-value=3.9e-06 Score=59.38 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=47.6
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhccC-----CCHHHHHhccccc--cCcee--ecCC-CH-HHHHHHHHHHHHH
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGVF-----KEEEIFASGEWAK--TSTTF--KPVL-NE-EGRKKKAESWCRA 69 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~~-----~~~~~~~~~~~~~--~~~~~--~P~~-~~-~~y~~~y~~~~~~ 69 (81)
|||||+||.+++..|++++|||++|+.+.-.. ..+++........ ....+ .|.+ +. +.|..+..+|.++
T Consensus 466 ADVlg~pV~~~~~~ea~alGAA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 545 (556)
T PLN02669 466 ASIFGCDVYTVQRPDSASLGAALRAAHGWLCNEQGSFVPISCLYEGKLEATSLSCKLAVKAGDQELLSQYGLLMKKRMEI 545 (556)
T ss_pred HHHcCCCeEecCCCCchHHHHHHHHHHHHhhhhhcccCChhhhcccccccCcccceeeccCCCccHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999853211 1111111111110 01123 5655 44 4788888888888
Q ss_pred HHHHhc
Q 036432 70 VERTFN 75 (81)
Q Consensus 70 ~~~~~~ 75 (81)
-+.++.
T Consensus 546 ~~~~~~ 551 (556)
T PLN02669 546 EQQLVE 551 (556)
T ss_pred HHHHHH
Confidence 776653
No 21
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=98.21 E-value=4.7e-07 Score=55.61 Aligned_cols=29 Identities=52% Similarity=0.871 Sum_probs=27.0
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhh
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAI 29 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~ 29 (81)
||+||+||.+++..|++++|||++|++++
T Consensus 170 Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 170 ADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp HHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred HHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 68999999999999999999999999874
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0051 Score=43.18 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=45.1
Q ss_pred CCcCCCceecCCCCchhHHHHHHHHHHhhcc-----CCCHHHHHh--ccccc-cCceeecCCCH-HHHHHHHHHHHHHHH
Q 036432 1 ADLLGSPVIRPADKETTALGAAFADGLAIGV-----FKEEEIFAS--GEWAK-TSTTFKPVLNE-EGRKKKAESWCRAVE 71 (81)
Q Consensus 1 ADilg~~v~~~~~~e~~alGAA~lA~~~~G~-----~~~~~~~~~--~~~~~-~~~~~~P~~~~-~~y~~~y~~~~~~~~ 71 (81)
|||+|.||.+.+..++++||+|+-|+.+.-. .-.+..... +..+. ..-.-+|.+.+ +.|..++++++++-+
T Consensus 463 adVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p~~~~~e~Y~~ll~~~~e~e~ 542 (545)
T KOG2531|consen 463 ADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEPDSANWEIYGPLLKRLSELED 542 (545)
T ss_pred HHHhCCCeEeecCCchhhHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecCCcchHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999998876421 101100000 00000 12235676666 478888888887655
Q ss_pred H
Q 036432 72 R 72 (81)
Q Consensus 72 ~ 72 (81)
.
T Consensus 543 ~ 543 (545)
T KOG2531|consen 543 T 543 (545)
T ss_pred h
Confidence 4
No 23
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=89.00 E-value=0.26 Score=34.02 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=21.7
Q ss_pred CcCCCceecCCCCch-hHHHHHHHHH
Q 036432 2 DLLGSPVIRPADKET-TALGAAFADG 26 (81)
Q Consensus 2 Dilg~~v~~~~~~e~-~alGAA~lA~ 26 (81)
|.+|++|.+|+..+. +|+|||++|.
T Consensus 364 ~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 364 DLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred HHhCCeeecCCccchhhHHHHHHHHh
Confidence 678999999998774 9999999874
No 24
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=87.79 E-value=0.37 Score=33.52 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=20.7
Q ss_pred CcCCCceecCCCCc-hhHHHHHHHH
Q 036432 2 DLLGSPVIRPADKE-TTALGAAFAD 25 (81)
Q Consensus 2 Dilg~~v~~~~~~e-~~alGAA~lA 25 (81)
+.||.+|.+|+..+ .+|+|||++|
T Consensus 377 ~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 377 DLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred HHhCCcEEECCcccHHHHHHHHHHh
Confidence 46899999999888 5999999987
No 25
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=87.75 E-value=0.39 Score=30.89 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=18.8
Q ss_pred CceecCCCCchhHHHHHHHHHHhh
Q 036432 6 SPVIRPADKETTALGAAFADGLAI 29 (81)
Q Consensus 6 ~~v~~~~~~e~~alGAA~lA~~~~ 29 (81)
.+|......+++.+|||++|+++.
T Consensus 219 ~~v~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 219 CKVEFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp EEEEEEE-SSTHHHHHHHHHHHHH
T ss_pred ceEEEEEecCchHHHHHHHHHHhc
Confidence 467666678999999999999863
No 26
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=84.30 E-value=0.77 Score=30.68 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=18.8
Q ss_pred CcCCCcee-cCCCCc-hhHHHHHHHHH
Q 036432 2 DLLGSPVI-RPADKE-TTALGAAFADG 26 (81)
Q Consensus 2 Dilg~~v~-~~~~~e-~~alGAA~lA~ 26 (81)
+.||++|. .|...+ .+|+|||++|.
T Consensus 261 ~~Lg~~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 261 RILGIKAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred HHhCCCceeCCCCccHHHHHHHHHHHH
Confidence 45788887 555444 69999999985
No 27
>PTZ00107 hexokinase; Provisional
Probab=77.31 E-value=2.1 Score=30.40 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=20.4
Q ss_pred CCceecCCCCchhHHHHHHHHHHhh
Q 036432 5 GSPVIRPADKETTALGAAFADGLAI 29 (81)
Q Consensus 5 g~~v~~~~~~e~~alGAA~lA~~~~ 29 (81)
+.+|......+++.+|||++|+.+.
T Consensus 437 ~~~v~l~~a~DGSg~GAAl~AA~~~ 461 (464)
T PTZ00107 437 AGNVVFYLADDGSGKGAAIIAAMVA 461 (464)
T ss_pred CCcEEEEEccCchHHHHHHHHHHhc
Confidence 3567777788999999999999863
No 28
>PF11527 ARL2_Bind_BART: The ARF-like 2 binding protein BART; InterPro: IPR023379 This domain is found in ADP-ribosylation factor-like 2 (ARF2) binding protein, also known as BART, and in uncharacterised proteins. BART binds specifically to ARF2.GTP with a high affinity. However, it does not bind to ARF2.GDP. It is thought that this specific interaction is due to BART being the first identified ARF2-specific effector. The function is not completely characterised []. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1 []. ; PDB: 2K0S_A 2K9A_A 3DOF_B 3DOE_B.
Probab=75.46 E-value=1.8 Score=24.91 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=23.6
Q ss_pred CceeecCCCHH-HHHHHHHHHHHHHHHHhc
Q 036432 47 STTFKPVLNEE-GRKKKAESWCRAVERTFN 75 (81)
Q Consensus 47 ~~~~~P~~~~~-~y~~~y~~~~~~~~~~~~ 75 (81)
..+|.|..++. .|.++|..|+.++++.+.
T Consensus 33 c~~F~~~eEnkley~~i~~ey~~lvE~~le 62 (121)
T PF11527_consen 33 CIVFDDEEENKLEYTEIHQEYKELVEKLLE 62 (121)
T ss_dssp CCCT-SSSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 34799988875 899999999999998763
No 29
>PLN02914 hexokinase
Probab=74.70 E-value=2.8 Score=30.01 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.5
Q ss_pred CceecCCCCchhHHHHHHHHHHhh
Q 036432 6 SPVIRPADKETTALGAAFADGLAI 29 (81)
Q Consensus 6 ~~v~~~~~~e~~alGAA~lA~~~~ 29 (81)
.+|......+++.+|||++|+++.
T Consensus 465 ~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 465 KNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred CcEEEEEccCchHHHHHHHHHHhh
Confidence 356667778999999999998764
No 30
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=73.34 E-value=2 Score=30.63 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=20.7
Q ss_pred CceecCCCCchhHHHHHHHHHHhhc
Q 036432 6 SPVIRPADKETTALGAAFADGLAIG 30 (81)
Q Consensus 6 ~~v~~~~~~e~~alGAA~lA~~~~G 30 (81)
..|.....++++++|||++|+++..
T Consensus 445 ~~v~i~~s~dgSg~GAAL~Aav~~~ 469 (474)
T KOG1369|consen 445 IHVKLVLSEDGSGRGAALIAAVASR 469 (474)
T ss_pred ceEEEEECCCCccccHHHHHHHHhh
Confidence 4567777889999999999998754
No 31
>PLN02405 hexokinase
Probab=73.13 E-value=2.9 Score=29.94 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=19.8
Q ss_pred CceecCCCCchhHHHHHHHHHHhh
Q 036432 6 SPVIRPADKETTALGAAFADGLAI 29 (81)
Q Consensus 6 ~~v~~~~~~e~~alGAA~lA~~~~ 29 (81)
.+|......+++.+|||++|+...
T Consensus 467 ~~v~l~~a~DGSGvGAAl~AA~~~ 490 (497)
T PLN02405 467 ESIEVEHSNDGSGIGAALLAASHS 490 (497)
T ss_pred ceEEEEEecCchHHHHHHHHHHHh
Confidence 357777788999999999999874
No 32
>PLN02362 hexokinase
Probab=67.05 E-value=5.2 Score=28.81 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=19.3
Q ss_pred ceecCCCCchhHHHHHHHHHHhhc
Q 036432 7 PVIRPADKETTALGAAFADGLAIG 30 (81)
Q Consensus 7 ~v~~~~~~e~~alGAA~lA~~~~G 30 (81)
.|......+++.+|||++|+....
T Consensus 477 ~v~i~~a~DGSgvGAAl~AA~~~~ 500 (509)
T PLN02362 477 HVILKATEDGSGIGSALLAASYSS 500 (509)
T ss_pred eEEEEEccCchHHHHHHHHHHHHh
Confidence 455666778999999999998754
No 33
>CHL00094 dnaK heat shock protein 70
Probab=65.81 E-value=3.8 Score=29.85 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=22.7
Q ss_pred CcCCCceecCC-CCchhHHHHHHHHHHhhccCC
Q 036432 2 DLLGSPVIRPA-DKETTALGAAFADGLAIGVFK 33 (81)
Q Consensus 2 Dilg~~v~~~~-~~e~~alGAA~lA~~~~G~~~ 33 (81)
++||.++.... ..++.|+|||+.|+...|.++
T Consensus 350 ~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~ 382 (621)
T CHL00094 350 KLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK 382 (621)
T ss_pred HHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence 35777765433 456899999999998776543
No 34
>PLN02596 hexokinase-like
Probab=65.07 E-value=5.8 Score=28.44 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.5
Q ss_pred ceecCCCCchhHHHHHHHHHHhh
Q 036432 7 PVIRPADKETTALGAAFADGLAI 29 (81)
Q Consensus 7 ~v~~~~~~e~~alGAA~lA~~~~ 29 (81)
+|.....++++..|||++|+...
T Consensus 463 ~i~~~~s~DGSG~GAAl~AA~~~ 485 (490)
T PLN02596 463 NVVIEHSHGGSGAGALFLAACQT 485 (490)
T ss_pred cEEEEEccCchhHHHHHHHHhhc
Confidence 56666677899999999998754
No 35
>PRK13317 pantothenate kinase; Provisional
Probab=59.51 E-value=9.8 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=17.7
Q ss_pred CCceecCCCCc-hhHHHHHHHHH
Q 036432 5 GSPVIRPADKE-TTALGAAFADG 26 (81)
Q Consensus 5 g~~v~~~~~~e-~~alGAA~lA~ 26 (81)
+.++..|+..+ .+|+|||+++.
T Consensus 251 ~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 251 NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CceEEecCCCchhHHHHHHHHhh
Confidence 67788888777 59999998764
No 36
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=58.42 E-value=6.8 Score=26.59 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=17.2
Q ss_pred ecCCCCchhHHHHHHHHHHhhcc
Q 036432 9 IRPADKETTALGAAFADGLAIGV 31 (81)
Q Consensus 9 ~~~~~~e~~alGAA~lA~~~~G~ 31 (81)
+.....+.+|+|||++|+.-.++
T Consensus 298 ~l~~~k~ssAvgAA~laa~~~~~ 320 (336)
T KOG1794|consen 298 ELYRPKESSAVGAAILAASLDNI 320 (336)
T ss_pred EEEeecccchHHHHHHhhhhccc
Confidence 34445588999999999876653
No 37
>PHA00456 hypothetical protein
Probab=56.51 E-value=13 Score=16.85 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 036432 57 EGRKKKAESWCR 68 (81)
Q Consensus 57 ~~y~~~y~~~~~ 68 (81)
..|.++|+.|++
T Consensus 20 ~~Y~ely~lWk~ 31 (34)
T PHA00456 20 DAYQELYNLWKR 31 (34)
T ss_pred HHHHHHHHHHHH
Confidence 578999999986
No 38
>PRK13410 molecular chaperone DnaK; Provisional
Probab=56.01 E-value=11 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=21.7
Q ss_pred CcCCCceec-CCCCchhHHHHHHHHHHhhcc
Q 036432 2 DLLGSPVIR-PADKETTALGAAFADGLAIGV 31 (81)
Q Consensus 2 Dilg~~v~~-~~~~e~~alGAA~lA~~~~G~ 31 (81)
+++|.++.. ....|+.|+|||+.|+.-.|-
T Consensus 350 ~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 380 (668)
T PRK13410 350 TLIPREPNQNVNPDEVVAVGAAIQAGILAGE 380 (668)
T ss_pred HHcCCCcccCCCCchHHHHhHHHHHHhhccc
Confidence 457776543 445678999999999986664
No 39
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=48.12 E-value=15 Score=27.30 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=20.3
Q ss_pred CcCCCce-ecCCCCchhHHHHHHHHHHhhc
Q 036432 2 DLLGSPV-IRPADKETTALGAAFADGLAIG 30 (81)
Q Consensus 2 Dilg~~v-~~~~~~e~~alGAA~lA~~~~G 30 (81)
++||.+. ......|+-|+|||+.|+.-.|
T Consensus 375 ~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~ 404 (657)
T PTZ00186 375 KFFQKDPFRGVNPDEAVALGAATLGGVLRG 404 (657)
T ss_pred HHhCCCccccCCCchHHHHhHHHHHHHhcc
Confidence 3566644 4445567899999999986554
No 40
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=39.44 E-value=15 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=19.5
Q ss_pred CcCCCceecCC-CCchhHHHHHHHHHH
Q 036432 2 DLLGSPVIRPA-DKETTALGAAFADGL 27 (81)
Q Consensus 2 Dilg~~v~~~~-~~e~~alGAA~lA~~ 27 (81)
+.||+||.+.. ..++.|+|||+.+..
T Consensus 297 ~~~~~~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 297 EETKVPVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred HHHCCCceecCCHHHHHHHHHHHHHhc
Confidence 45788987776 445799999998654
No 41
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=37.24 E-value=21 Score=19.08 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHh
Q 036432 16 TTALGAAFADGLA 28 (81)
Q Consensus 16 ~~alGAA~lA~~~ 28 (81)
...+|+|+|-++|
T Consensus 29 Ve~FG~AlLRGMG 41 (77)
T PF12656_consen 29 VEEFGAALLRGMG 41 (77)
T ss_pred HHHHHHHHHHHcC
Confidence 3679999999886
No 42
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=35.70 E-value=40 Score=24.13 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred cCCCceec-CCCCchhHHHHHHHHHHhhc
Q 036432 3 LLGSPVIR-PADKETTALGAAFADGLAIG 30 (81)
Q Consensus 3 ilg~~v~~-~~~~e~~alGAA~lA~~~~G 30 (81)
.||.++.. ....++-|+|||+.|+.-.+
T Consensus 351 ~f~~~~~~~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 351 LFGKKISKSVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp HTTSEEB-SS-TTTHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccchhhhcc
Confidence 45655644 33456799999999986555
No 43
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=30.53 E-value=31 Score=25.02 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=20.0
Q ss_pred cCCCceecC-CCCchhHHHHHHHHHHhhcc
Q 036432 3 LLGSPVIRP-ADKETTALGAAFADGLAIGV 31 (81)
Q Consensus 3 ilg~~v~~~-~~~e~~alGAA~lA~~~~G~ 31 (81)
.+|.++... ...++.|+|||+.|+.-.|.
T Consensus 347 ~f~~~~~~~~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 347 FFGKEPNKSVNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred HhCCcccCCcCcHHHHHHHHHHHHHHhcCC
Confidence 466666443 34668999999999875543
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=30.37 E-value=57 Score=15.18 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=16.2
Q ss_pred CceeecCCCH--HHHHHHHHHHHHHHHHH
Q 036432 47 STTFKPVLNE--EGRKKKAESWCRAVERT 73 (81)
Q Consensus 47 ~~~~~P~~~~--~~y~~~y~~~~~~~~~~ 73 (81)
.+.+.|+... ....+.+..-.++++.+
T Consensus 25 ~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L 53 (55)
T cd06257 25 ALKYHPDKNPDDPEAEEKFKEINEAYEVL 53 (55)
T ss_pred HHHHCcCCCCCcHHHHHHHHHHHHHHHHh
Confidence 4467887754 34455666666666543
No 45
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=30.25 E-value=47 Score=24.41 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=19.1
Q ss_pred cCCCceecC-CCCchhHHHHHHHHHHhh
Q 036432 3 LLGSPVIRP-ADKETTALGAAFADGLAI 29 (81)
Q Consensus 3 ilg~~v~~~-~~~e~~alGAA~lA~~~~ 29 (81)
.+|.++... ...++.|+|||+.|+.-.
T Consensus 331 ~f~~~~~~~~npdeaVA~GAAi~a~~l~ 358 (595)
T PRK01433 331 AFKVDILSDIDPDKAVVWGAALQAENLI 358 (595)
T ss_pred HhCCCceecCCchHHHHHHHHHHHHHhh
Confidence 467666443 446689999999998643
No 46
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=29.22 E-value=38 Score=23.36 Aligned_cols=33 Identities=36% Similarity=0.439 Sum_probs=19.9
Q ss_pred CcCCCceecCCC----CchhHHHHHHHH-HHhhccCCC
Q 036432 2 DLLGSPVIRPAD----KETTALGAAFAD-GLAIGVFKE 34 (81)
Q Consensus 2 Dilg~~v~~~~~----~e~~alGAA~lA-~~~~G~~~~ 34 (81)
|.++.++..... ...+|.|+|++| +++-|.|..
T Consensus 286 ~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG~~~~ 323 (343)
T PF07318_consen 286 DYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGGRYKE 323 (343)
T ss_pred hhcccceeecccccccchhhhhhHHHHhhhhhcccHHH
Confidence 345555544433 233999999987 466666543
No 47
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=28.22 E-value=50 Score=21.09 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=30.0
Q ss_pred HhhccCCCHHHHHhccccccCceeecCCCHH---HHHHHHHHHHHHHHHHhchhhcc
Q 036432 27 LAIGVFKEEEIFASGEWAKTSTTFKPVLNEE---GRKKKAESWCRAVERTFNLADIS 80 (81)
Q Consensus 27 ~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~---~y~~~y~~~~~~~~~~~~~~~~~ 80 (81)
+.-|++.|+++-..+........-.|+.+.. -=+++|.+|++-++.+..-++++
T Consensus 77 itdgL~NDlq~yL~~~y~~~~~~~rpd~dk~NAGL~eeLfkq~~~Ei~~Lra~hpn~ 133 (236)
T PF07067_consen 77 ITDGLANDLQEYLSKHYTSRSVKCRPDTDKTNAGLPEELFKQYREEIEELRAAHPNN 133 (236)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCCCcccccCCCCHHHHHHHHHHHHHHHHhCcch
Confidence 3445555554432221111123456766542 23789999999999887654443
No 48
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=28.00 E-value=82 Score=18.42 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=18.3
Q ss_pred eeecCCCH---HHHHHHHHHHHHHHHHH
Q 036432 49 TFKPVLNE---EGRKKKAESWCRAVERT 73 (81)
Q Consensus 49 ~~~P~~~~---~~y~~~y~~~~~~~~~~ 73 (81)
.|.|..+. ..|++-|+.|++-+++.
T Consensus 92 ~f~P~~e~p~y~~~~~e~~~Yr~~LE~r 119 (131)
T PF09779_consen 92 SFLPDPEDPEYANYEEELPEYRRSLEQR 119 (131)
T ss_pred hcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 48887754 35777888888887764
No 49
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=27.64 E-value=46 Score=24.41 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=19.9
Q ss_pred cCCCceecC-CCCchhHHHHHHHHHHhhc
Q 036432 3 LLGSPVIRP-ADKETTALGAAFADGLAIG 30 (81)
Q Consensus 3 ilg~~v~~~-~~~e~~alGAA~lA~~~~G 30 (81)
+||.++... ...++.|+|||+.|+.-.|
T Consensus 349 ~fg~~~~~~~npdeava~GAa~~aa~l~~ 377 (627)
T PRK00290 349 FFGKEPNKGVNPDEVVAIGAAIQGGVLAG 377 (627)
T ss_pred HhCCCCCcCcCChHHHHHhHHHHHHHhcC
Confidence 467666443 3466899999999987555
No 50
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=26.49 E-value=39 Score=20.04 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=8.3
Q ss_pred HHHhhccCCCHHHH
Q 036432 25 DGLAIGVFKEEEIF 38 (81)
Q Consensus 25 A~~~~G~~~~~~~~ 38 (81)
|++|+|+.+.+|.+
T Consensus 35 AAIGLGFLsq~EGL 48 (139)
T PRK13755 35 AAIGLGFLSQYEGL 48 (139)
T ss_pred HHHhhhHHHHHHHH
Confidence 55677776555443
No 51
>PLN03184 chloroplast Hsp70; Provisional
Probab=25.26 E-value=53 Score=24.50 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=19.9
Q ss_pred cCCCceec-CCCCchhHHHHHHHHHHhhc
Q 036432 3 LLGSPVIR-PADKETTALGAAFADGLAIG 30 (81)
Q Consensus 3 ilg~~v~~-~~~~e~~alGAA~lA~~~~G 30 (81)
+||.++.. ....|+.|+|||+.|+.-.+
T Consensus 388 ~fg~~~~~~~npdeaVA~GAAi~aa~ls~ 416 (673)
T PLN03184 388 LTGKDPNVTVNPDEVVALGAAVQAGVLAG 416 (673)
T ss_pred HhCCCcccccCcchHHHHHHHHHHHHhcc
Confidence 46666543 44567899999999986544
No 52
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.54 E-value=43 Score=22.93 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=17.1
Q ss_pred cCCCceecCCCCchhHHHHHHHHH
Q 036432 3 LLGSPVIRPADKETTALGAAFADG 26 (81)
Q Consensus 3 ilg~~v~~~~~~e~~alGAA~lA~ 26 (81)
.|+.+|..... +.+|.|+|++|.
T Consensus 288 ~L~~~V~~L~~-ksAA~G~AiIA~ 310 (326)
T TIGR03281 288 VLSCKVLVLDS-ESAAIGLALIAE 310 (326)
T ss_pred HhCCCeEEecc-hhhhhhHHHHHH
Confidence 45667766654 679999999885
No 53
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=23.19 E-value=72 Score=16.03 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=7.5
Q ss_pred hhHHHHHHHHH
Q 036432 16 TTALGAAFADG 26 (81)
Q Consensus 16 ~~alGAA~lA~ 26 (81)
++++|.|+-|+
T Consensus 26 GtalGvaisAg 36 (61)
T PF14986_consen 26 GTALGVAISAG 36 (61)
T ss_pred hhHHHHHHHHH
Confidence 56777777665
No 54
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=22.90 E-value=91 Score=21.43 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHHhhcc
Q 036432 13 DKETTALGAAFADGLAIGV 31 (81)
Q Consensus 13 ~~e~~alGAA~lA~~~~G~ 31 (81)
.+++.|+|||+.+....+.
T Consensus 199 gD~G~aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 199 GDAGLAIGAALYAWHELGG 217 (360)
T ss_dssp SGGGHHHHHHHHHHHHTT-
T ss_pred CCcchHHHHHHHHHHHhcC
Confidence 4567999999999877654
No 55
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=22.65 E-value=59 Score=21.62 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=18.2
Q ss_pred CcCCCceecCCC-CchhHHHHHHHHH
Q 036432 2 DLLGSPVIRPAD-KETTALGAAFADG 26 (81)
Q Consensus 2 Dilg~~v~~~~~-~e~~alGAA~lA~ 26 (81)
+.+|+||.+... .++.|+||++++.
T Consensus 301 ~~~~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 301 KETGLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHCCCceecCChHHHHHHHHHHHHh
Confidence 357888877764 4568899998754
No 56
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=22.47 E-value=71 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=17.1
Q ss_pred ceecCCCCchhHHHHHHHHHHhh
Q 036432 7 PVIRPADKETTALGAAFADGLAI 29 (81)
Q Consensus 7 ~v~~~~~~e~~alGAA~lA~~~~ 29 (81)
++......+++.+|||++|.++.
T Consensus 438 ~i~i~~a~dgsglGAAl~a~~~~ 460 (466)
T COG5026 438 KIKIKPAEDGSGLGAALCALLAQ 460 (466)
T ss_pred eeeEEecccCcchHHHHHHHHhc
Confidence 45555566789999999998753
No 57
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=22.47 E-value=70 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.118 Sum_probs=18.3
Q ss_pred cCCCceecCCC-CchhHHHHHHHHHH
Q 036432 3 LLGSPVIRPAD-KETTALGAAFADGL 27 (81)
Q Consensus 3 ilg~~v~~~~~-~e~~alGAA~lA~~ 27 (81)
.++.||.+... .++.|+||++.+..
T Consensus 299 ~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 299 ETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 46788877654 45689999998754
No 58
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=31 Score=26.09 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=19.5
Q ss_pred CCcCCCceecC-CCCchhHHHHHHHHHH
Q 036432 1 ADLLGSPVIRP-ADKETTALGAAFADGL 27 (81)
Q Consensus 1 ADilg~~v~~~-~~~e~~alGAA~lA~~ 27 (81)
+|.+|+++.++ ...|+.|.|||+..++
T Consensus 354 s~~Fgke~s~TlN~dEavarG~ALqcAI 381 (727)
T KOG0103|consen 354 SDFFGKELSRTLNQDEAVARGAALQCAI 381 (727)
T ss_pred HHHhCCcccccccHHHHHHHhHHHHHHh
Confidence 36788888654 4577899999876654
No 59
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=21.54 E-value=81 Score=17.22 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=8.2
Q ss_pred hHHHHHHH--HHHhhccC
Q 036432 17 TALGAAFA--DGLAIGVF 32 (81)
Q Consensus 17 ~alGAA~l--A~~~~G~~ 32 (81)
.+.|+|++ +++|+|.+
T Consensus 57 ias~la~lv~t~~G~g~y 74 (85)
T TIGR01495 57 IASGLALLVGAGVGLGYY 74 (85)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 44454444 44566654
No 60
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=21.51 E-value=1.1e+02 Score=22.15 Aligned_cols=49 Identities=27% Similarity=0.099 Sum_probs=30.3
Q ss_pred CchhHHHHHHHHHHhhccCCCHHHHHhccccccCceeecCCCHHHHHHHHHHHHH
Q 036432 14 KETTALGAAFADGLAIGVFKEEEIFASGEWAKTSTTFKPVLNEEGRKKKAESWCR 68 (81)
Q Consensus 14 ~e~~alGAA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~y~~~y~~~~~ 68 (81)
.+-.|.|-|+.++.+-|+ ++++- |... .++--|.|-.......|+.|++
T Consensus 181 Q~~~aRgeaiA~MKA~Gv--eYeER---Me~L-eevtyPkPL~e~L~~af~~y~~ 229 (461)
T PF12029_consen 181 QQRKARGEAIAEMKADGV--EYEER---MERL-EEVTYPKPLAELLEAAFETYRR 229 (461)
T ss_pred HHHHHHHHHHHHHHhcCC--CHHHH---HHHH-hhCCCCCchHHHHHHHHHHHHh
Confidence 355789999999999897 45543 2221 2233477765555556666654
Done!