Query 036434
Match_columns 244
No_of_seqs 138 out of 1454
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 8.3E-40 1.8E-44 290.9 28.2 243 1-243 88-364 (455)
2 PRK10367 DNA-damage-inducible 100.0 2.5E-37 5.4E-42 274.5 29.5 243 1-243 81-355 (441)
3 PRK00187 multidrug efflux prot 100.0 4.9E-36 1.1E-40 268.0 29.1 243 1-243 81-364 (464)
4 PRK10189 MATE family multidrug 100.0 3.1E-35 6.8E-40 263.4 28.9 243 1-243 100-382 (478)
5 PRK09575 vmrA multidrug efflux 100.0 2.7E-34 5.9E-39 256.1 28.6 243 1-243 84-359 (453)
6 PRK01766 multidrug efflux prot 100.0 2.5E-33 5.5E-38 250.1 28.7 243 1-243 83-362 (456)
7 KOG1347 Uncharacterized membra 100.0 3.3E-29 7.2E-34 222.4 25.2 244 1-244 100-373 (473)
8 TIGR00797 matE putative efflux 100.0 8.1E-28 1.8E-32 206.7 29.1 244 1-244 64-340 (342)
9 TIGR01695 mviN integral membra 99.9 1.8E-20 4E-25 169.0 28.1 237 3-242 75-350 (502)
10 PRK15099 O-antigen translocase 99.8 4.7E-18 1E-22 150.2 28.4 229 1-238 72-334 (416)
11 TIGR02900 spore_V_B stage V sp 99.8 2.6E-17 5.7E-22 148.0 26.7 230 1-234 72-350 (488)
12 PF03023 MVIN: MviN-like prote 99.7 1.5E-13 3.3E-18 122.7 30.2 224 2-228 49-307 (451)
13 PRK01766 multidrug efflux prot 99.5 1.1E-12 2.4E-17 117.3 18.3 120 1-120 310-431 (456)
14 PRK00187 multidrug efflux prot 99.5 1.7E-13 3.6E-18 122.9 12.9 121 122-243 5-132 (464)
15 PRK10189 MATE family multidrug 99.5 4.8E-13 1E-17 120.3 14.8 120 124-243 26-154 (478)
16 COG0534 NorM Na+-driven multid 99.5 5.2E-13 1.1E-17 119.3 13.0 121 123-243 13-140 (455)
17 PRK10367 DNA-damage-inducible 99.5 5.5E-13 1.2E-17 118.8 13.0 121 123-243 5-133 (441)
18 PRK09575 vmrA multidrug efflux 99.4 5.8E-12 1.3E-16 112.7 16.4 118 1-120 306-425 (453)
19 PF01554 MatE: MatE; InterPro 99.4 1.9E-13 4.1E-18 105.0 5.4 110 135-244 1-117 (162)
20 TIGR01695 mviN integral membra 99.4 6.4E-11 1.4E-15 107.0 18.2 118 1-120 295-417 (502)
21 COG0728 MviN Uncharacterized m 99.3 2.6E-09 5.6E-14 95.6 26.5 221 7-228 88-341 (518)
22 PF01554 MatE: MatE; InterPro 99.3 2.7E-12 5.9E-17 98.5 3.0 97 1-97 64-162 (162)
23 PRK10459 colanic acid exporter 99.2 9.3E-09 2E-13 92.9 25.4 217 4-230 72-318 (492)
24 PF03023 MVIN: MviN-like prote 99.2 1.6E-09 3.4E-14 96.9 19.5 118 1-120 270-392 (451)
25 COG0728 MviN Uncharacterized m 99.2 1.4E-08 2.9E-13 91.1 23.3 118 1-120 304-426 (518)
26 TIGR02900 spore_V_B stage V sp 99.2 2.5E-09 5.5E-14 96.2 18.4 116 1-120 307-423 (488)
27 TIGR00797 matE putative efflux 98.9 1.5E-08 3.2E-13 87.1 11.2 109 135-243 1-116 (342)
28 PRK10459 colanic acid exporter 98.8 1.4E-06 3E-11 78.8 20.7 116 1-120 278-394 (492)
29 PF14667 Polysacc_synt_C: Poly 98.7 2.5E-06 5.5E-11 64.2 15.7 68 51-120 2-69 (146)
30 COG2244 RfbX Membrane protein 98.5 5.3E-05 1.1E-09 68.2 22.6 185 46-231 115-326 (480)
31 PRK15099 O-antigen translocase 98.4 1.4E-05 3.1E-10 70.7 15.5 116 1-120 285-401 (416)
32 PF01943 Polysacc_synt: Polysa 98.3 0.00054 1.2E-08 56.3 22.1 104 59-163 120-242 (273)
33 PF13440 Polysacc_synt_3: Poly 98.3 0.0008 1.7E-08 54.8 22.4 116 47-163 90-220 (251)
34 COG2244 RfbX Membrane protein 98.3 0.0001 2.2E-09 66.3 18.1 109 1-113 285-394 (480)
35 KOG1347 Uncharacterized membra 98.1 4.2E-05 9E-10 68.8 11.2 119 123-242 24-150 (473)
36 PF07260 ANKH: Progressive ank 97.4 0.067 1.4E-06 45.2 21.7 126 35-160 116-269 (345)
37 PF04506 Rft-1: Rft protein; 95.8 0.44 9.5E-06 44.0 14.3 117 3-120 339-459 (549)
38 KOG2864 Nuclear division RFT1 94.8 0.69 1.5E-05 41.2 11.8 117 2-120 318-438 (530)
39 PF07260 ANKH: Progressive ank 88.3 12 0.00026 32.1 11.2 115 124-242 8-132 (345)
40 PF04505 Dispanin: Interferon- 78.0 11 0.00023 25.4 5.8 34 179-212 40-73 (82)
41 PF03904 DUF334: Domain of unk 73.3 19 0.00041 29.0 6.9 61 2-62 143-212 (230)
42 COG4267 Predicted membrane pro 49.5 1.9E+02 0.0041 25.7 13.9 115 2-120 319-435 (467)
43 PRK10484 putative transporter; 38.0 1.1E+02 0.0023 28.2 6.5 31 179-209 260-290 (523)
44 KOG2639 Sodium sulfate symport 35.9 3.7E+02 0.0081 25.2 12.2 25 124-148 651-675 (685)
45 PHA00094 VI minor coat protein 35.5 1.4E+02 0.0031 21.2 5.3 50 194-243 29-78 (112)
46 PRK09442 panF sodium/panthothe 27.7 1.8E+02 0.0038 26.4 6.1 65 179-243 253-317 (483)
47 TIGR00697 conserved hypothetic 27.4 2.3E+02 0.0049 22.5 5.9 45 172-219 36-82 (202)
48 PRK10739 putative antibiotic t 26.3 3E+02 0.0066 21.8 6.4 24 25-48 53-76 (197)
49 COG1738 yhhQ Uncharacterized m 25.6 2.5E+02 0.0055 22.9 6.0 46 173-221 60-107 (233)
50 PF02378 PTS_EIIC: Phosphotran 25.1 4.1E+02 0.0088 22.2 11.3 45 102-146 259-303 (322)
51 TIGR02119 panF sodium/pantothe 23.0 2.2E+02 0.0049 25.6 5.9 32 182-213 255-286 (471)
52 PHA03093 EEV glycoprotein; Pro 22.0 1.3E+02 0.0027 23.6 3.4 38 180-217 16-53 (185)
53 PF01914 MarC: MarC family int 21.3 4.2E+02 0.0091 21.0 6.8 16 70-85 61-76 (203)
54 PF12911 OppC_N: N-terminal TM 21.3 1.7E+02 0.0037 17.4 3.4 30 195-224 9-38 (56)
55 TIGR00774 NhaB Na+/H+ antiport 20.6 6.5E+02 0.014 23.2 7.9 82 66-147 378-494 (515)
56 TIGR00813 sss transporter, SSS 20.5 3E+02 0.0065 24.2 6.0 35 179-213 219-253 (407)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=8.3e-40 Score=290.91 Aligned_cols=243 Identities=20% Similarity=0.221 Sum_probs=227.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+|++++..+++++++++.+++... .+++.++++++++.++|+.+.+.+|+++..++.|+..++.++++++|++||+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 167 (455)
T COG0534 88 DRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKT 167 (455)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 7899999999999999999977655 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cC-CCcchHHHHHHHHHHHH------------------------HhhhhHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSK-TD-FGNTGAELTIGISYWFN------------------------EIFPSTKEFSFFA 133 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~-~~-~G~~G~a~at~i~~~~~------------------------~~~~~~~~~~~~~ 133 (244)
||+.++++++.|+++||+|+++ +| ||+.|+|+||.+++++. ++++.+|+++|+|
T Consensus 168 ~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG 247 (455)
T COG0534 168 PMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLG 247 (455)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhc
Confidence 9999999999999999999999 78 99999999999999998 2446789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHH
Q 036434 134 HLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLA 206 (244)
Q Consensus 134 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~ 206 (244)
.|.++++..+...+...+.+++++|++.+|++...... .++++. + .++++||++|+||+|++|+..+.++.++
T Consensus 248 ~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~ 327 (455)
T COG0534 248 LPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLS 327 (455)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876544433 777777 6 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 207 VAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
+.++.+++.+++++++++.++|++|+|+.+.+.++++
T Consensus 328 ~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~ 364 (455)
T COG0534 328 LLIALLIALLLLLFREPIISLFTTDPEVIALAVILLL 364 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=274.47 Aligned_cols=243 Identities=12% Similarity=0.022 Sum_probs=221.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+||+++..+++++++.+++++...+ ..+.++++++++.|||+.+.+.+|+++..++.|+..+..++++++|++||+|.
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 160 (441)
T PRK10367 81 NPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA 160 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 68999999999999999999987765 55789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH-----------H--h------h-----hhHHHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN-----------E--I------F-----PSTKEFSFFAHL 135 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~-----------~--~------~-----~~~~~~~~~~~p 135 (244)
||+.+++++++|+++||+|++++++|+.|+|+||.+++++. + + + +.+|+++|+|.|
T Consensus 161 ~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P 240 (441)
T PRK10367 161 PVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRD 240 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCch
Confidence 99999999999999999999999999999999999999876 0 0 1 235788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 036434 136 SVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVA 208 (244)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~ 208 (244)
.++++..+...+.+.+.+++++|++++|++...... .++++. + .++++||++|+||+||+|+..+.+..++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 241 IMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988875443333 666666 6 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 209 ~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
++.+.+++++.+++++.++|++|+|+++.+.++++
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~ 355 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLI 355 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.9e-36 Score=267.99 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=216.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL 80 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 80 (244)
|+||+++..++++.++.+++++..++.++.++++++++.|||+.+.+.+|+++..++.|+..+...+++++|++||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 81 DIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 68999999999999999999987766667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-c---CCCcchHHHHHHHHHHHH-----------H--------------hhhhHHHHHH
Q 036434 81 FLSSCATLCLQILLCWVLVSK-T---DFGNTGAELTIGISYWFN-----------E--------------IFPSTKEFSF 131 (244)
Q Consensus 81 ~~~~~~~~~~n~~l~~~~i~~-~---~~G~~G~a~at~i~~~~~-----------~--------------~~~~~~~~~~ 131 (244)
|+.++++.++|+++||+|+++ + +||+.|+|+||.++++.. + +++.+|+++|
T Consensus 161 ~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 240 (464)
T PRK00187 161 MVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWR 240 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHH
Confidence 999999999999999999987 3 499999999999987765 0 1134689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHH
Q 036434 132 FAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIF 204 (244)
Q Consensus 132 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~ 204 (244)
+++|.++++..+...+.+++.+++++|++++|++...... .+.++. + .++++||++|+||+|++|+..|.++.
T Consensus 241 lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~ 320 (464)
T PRK00187 241 LGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG 320 (464)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988865333222 455555 5 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhccccC--ch---hHHHHhhcccC
Q 036434 205 LAVAEAAIGSVALFCCRNVLAYLFNT--DK---DVVNYVSELVP 243 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~i~~lft~--~~---~v~~~~~~~l~ 243 (244)
++++.+++.+++.+.+++++.++|++ |+ |+++.+.++++
T Consensus 321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~ 364 (464)
T PRK00187 321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLA 364 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999974 44 67888777764
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.1e-35 Score=263.42 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=219.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLG--QDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLI 77 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~--~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~ 77 (244)
|+||+++..+++++++..++++.+++ +++.++++.+++ .|||+.+.+.+|+++..++.|+..+..++++++||.||+
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~ 179 (478)
T PRK10189 100 DRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNT 179 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 68999999999999999999987764 567899999984 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHH---------H-----------------hhhhHH
Q 036434 78 LALFLSSCATLCLQILLCWVLVSKT----DFGNTGAELTIGISYWFN---------E-----------------IFPSTK 127 (244)
Q Consensus 78 ~~~~~~~~~~~~~n~~l~~~~i~~~----~~G~~G~a~at~i~~~~~---------~-----------------~~~~~~ 127 (244)
+.||+.++++.++|+++||.|+++. +||+.|+|+||.+++++. . +++.+|
T Consensus 180 ~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
T PRK10189 180 KIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIW 259 (478)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHH
Confidence 9999999999999999999999873 799999999999998876 0 124578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHH
Q 036434 128 EFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTC 200 (244)
Q Consensus 128 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~ 200 (244)
+++|+|+|.+++...+...+.+.+.+++++|++++|++...... .++++. + +++++||++|+||+|++|+..+
T Consensus 260 ~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~ 339 (478)
T PRK10189 260 EVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLR 339 (478)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999988875443322 555665 6 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 201 VVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
.+..++++++.+.+++.+++++++.++||+|+|+++.+.++++
T Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~ 382 (478)
T PRK10189 340 HVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIW 382 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888764
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.7e-34 Score=256.15 Aligned_cols=243 Identities=14% Similarity=0.105 Sum_probs=218.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+||+++..+++++++.+++++..+ .+.+.++++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~ 163 (453)
T PRK09575 84 DLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNL 163 (453)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 6899999999999999999998776 466789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH-----------------------HhhhhHHHHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN-----------------------EIFPSTKEFSFFAHLS 136 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~-----------------------~~~~~~~~~~~~~~p~ 136 (244)
++..++.+.++|+++||+|++++++|+.|+++||.+++++. ++++.+|+++|+|.|.
T Consensus 164 ~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~ 243 (453)
T PRK09575 164 ATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSS 243 (453)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhH
Confidence 99999999999999999999988999999999999999987 1335578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 036434 137 VVMFCLEWCSYEILVLLSGILPN-PKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVA 208 (244)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~g~-~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~ 208 (244)
++++..+...+.+.+.+++++|+ +++|++...... .++++. + .++++||++|+||+||+|+..+.++.+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~ 323 (453)
T PRK09575 244 FFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVL 323 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 456654332221 444555 5 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchhccccC-chhHHHHhhcccC
Q 036434 209 EAAIGSVALFCCRNVLAYLFNT-DKDVVNYVSELVP 243 (244)
Q Consensus 209 ~~~~~~~~~~~~~~~i~~lft~-~~~v~~~~~~~l~ 243 (244)
.+++.+++++.+++++.++|++ |||+++.+.++++
T Consensus 324 ~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~ 359 (453)
T PRK09575 324 AGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIR 359 (453)
T ss_pred HHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHH
Confidence 9999999999999999999995 7999999988875
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.5e-33 Score=250.14 Aligned_cols=243 Identities=18% Similarity=0.306 Sum_probs=218.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+|++++.+++++.++++++++++++ ..+.++++++++.|||+.+.+.+|+++..++.|+..+..++++++|++||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 67899999999999999999987765 45678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHH-----------H--------------hhhhHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKT----DFGNTGAELTIGISYWFN-----------E--------------IFPSTKEFS 130 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~----~~G~~G~a~at~i~~~~~-----------~--------------~~~~~~~~~ 130 (244)
+++.++++.++|+++|++|+++. ++|+.|+++||.+++++. + +++.+|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 99999999999999999999762 489999999999999876 0 224578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHH
Q 036434 131 FFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVI 203 (244)
Q Consensus 131 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~ 203 (244)
|+++|.++++..+...+.+++.+++++|++++|+....... .++++. + .++++||++|+||+|++|+..+.++
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~ 322 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGL 322 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999888765433222 555555 5 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 204 FLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
.+++.++++..++++.+++++.++|++|||+.+.+.++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~ 362 (456)
T PRK01766 323 AVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLL 362 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988875
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=222.42 Aligned_cols=244 Identities=41% Similarity=0.651 Sum_probs=229.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL 80 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 80 (244)
+++..+.+.+++..+....++|...++.+.++++..++|||++.+.+..|.++..|..+.......++.++|+|++..+.
T Consensus 100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH---------------------HhhhhHHHHHHHHHHHHHH
Q 036434 81 FLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN---------------------EIFPSTKEFSFFAHLSVVM 139 (244)
Q Consensus 81 ~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~---------------------~~~~~~~~~~~~~~p~~~~ 139 (244)
.+.......+|+.++|++++..++|..|++++..+++|.. .+++++++++|.++|++++
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchhe
Confidence 9999999999999999999999999999999999999998 1268899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH-----HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 036434 140 FCLEWCSYEILVLLSGILPNPKLETSVLTIWY-----LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVAEA 210 (244)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~-----~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~ 210 (244)
.++|++.+.+.....|.+++..++....++++ .|++|. + ++++++|.+|+||+++||...+.+...++..+
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g 339 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIG 339 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999998666655566655 677777 6 88999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhccccCchhHHHHhhcccCC
Q 036434 211 AIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA 244 (244)
Q Consensus 211 ~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~~ 244 (244)
...+...+.+++.+.++||+|+|+.+...+..|+
T Consensus 340 ~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pl 373 (473)
T KOG1347|consen 340 ASLGTTLLACREVLGQIFTNSKEVLDLVADLTPL 373 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888763
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.97 E-value=8.1e-28 Score=206.66 Aligned_cols=244 Identities=23% Similarity=0.350 Sum_probs=216.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+|++++..++++.+...++++.+++ ..+.+++.++++.|+|..+++.+|+++..++.|+..+..+.++.+|+.||++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (342)
T TIGR00797 64 NYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKT 143 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 56889999999999999999997764 56789999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hcC-CCcchHHHHHHHHHHHH--------H---------------hhhhHHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVS-KTD-FGNTGAELTIGISYWFN--------E---------------IFPSTKEFSFFAH 134 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~-~~~-~G~~G~a~at~i~~~~~--------~---------------~~~~~~~~~~~~~ 134 (244)
+++..+++.++|+.++++++. .+| +|+.|+++++.+++.+. . +++.+|+++|.+.
T Consensus 144 ~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 223 (342)
T TIGR00797 144 PMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGL 223 (342)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCc
Confidence 999999999999999999998 578 89999999999988876 1 1256799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH--HHHH-HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434 135 LSVVMFCLEWCSYEILVLLSGILPNPKLETSVL--TIWY-LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV 207 (244)
Q Consensus 135 p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~--~i~~-~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~ 207 (244)
|..+.+..+...+.+++.+++++|++++++... .... ..+++. + ..+.++++.|+||.|++|+..+.++...+
T Consensus 224 P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (342)
T TIGR00797 224 PIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSL 303 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877664322 1111 444444 4 88899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhccccCchhHHHHhhcccCC
Q 036434 208 AEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA 244 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~~ 244 (244)
.++.+..+.+.++++++.++|++||++.+.+.+++|+
T Consensus 304 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (342)
T TIGR00797 304 LLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIF 340 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988874
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.89 E-value=1.8e-20 Score=169.01 Aligned_cols=237 Identities=13% Similarity=0.019 Sum_probs=190.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH-HHH-HHHhHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 036434 3 QKIGTYTYPAMFFCIAICIP-ISV-LWIFMDKVLILL--GQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLIL 78 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~il~~l--~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~ 78 (244)
|+.++...++++...+++.. ... .+.+++++..++ +.|+|..+.+.+|+++..++.|+..+....++++|+.||.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (502)
T TIGR01695 75 KEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFF 154 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeH
Confidence 46666777777766655544 344 455678888887 56888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHH--HHHHHHHHHH--------------------HhhhhHHHHHHHHHHH
Q 036434 79 ALFLSSCATLCLQILLCWVLVSKTDFGNTGAE--LTIGISYWFN--------------------EIFPSTKEFSFFAHLS 136 (244)
Q Consensus 79 ~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a--~at~i~~~~~--------------------~~~~~~~~~~~~~~p~ 136 (244)
.+++.++..++.+++...++. .++|..|++ +++.+++.+. .+++.+|+++|.+.|.
T Consensus 155 ~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~ 232 (502)
T TIGR01695 155 IPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPT 232 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHH
Confidence 999999999888877544443 468999988 9998888765 1235689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhh-----hH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434 137 VVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRN-----PP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV 207 (244)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~~~~~-----~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~ 207 (244)
.+++..+.....+++.+.+.+|+++++....... .... .. + ..|.+|++.|+||+|++|+..+++.....
T Consensus 233 ~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~-l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
T TIGR01695 233 TLGSSASQITLLINTALASFLEIGSVSALYYANR-IYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSL 311 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888876654222111 2222 22 2 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhccccC----chhHHHHhhccc
Q 036434 208 AEAAIGSVALFCCRNVLAYLFNT----DKDVVNYVSELV 242 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~i~~lft~----~~~v~~~~~~~l 242 (244)
.++...+..+..+++++.++|.. |+|..+.+.+++
T Consensus 312 ~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l 350 (502)
T TIGR01695 312 LLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATIL 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 99999999999999999998865 556666665554
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=99.84 E-value=4.7e-18 Score=150.20 Aligned_cols=229 Identities=11% Similarity=0.023 Sum_probs=181.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+|+.++....++++....++..+.+ +.+.+++...++.||| . ..+..+..+..+...+....++.+|+.||++.
T Consensus 72 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~ 147 (416)
T PRK15099 72 QPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAG 147 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999987764 6678899988877774 2 35566666666677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH----------------------HhhhhHHHHHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN----------------------EIFPSTKEFSFFAHLSV 137 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~----------------------~~~~~~~~~~~~~~p~~ 137 (244)
++...+++.++|+.+ ++++++. .|+.|+++||.+++.+. .+++.+|++++.|.|..
T Consensus 148 ~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~ 225 (416)
T PRK15099 148 NALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMAL 225 (416)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHH
Confidence 999999999999887 5554442 39999999999998775 12345799999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCchHHHHHHH--HHHH-H-HhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 036434 138 VMFCLEWCSYEILVLLSG-ILPNPKLETSVL--TIWY-L-YRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVA 208 (244)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-~~g~~~la~~~~--~i~~-~-~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~ 208 (244)
+++.........++.+++ ++|+++++.-.. .+.. . ..++. + ..|.++++ +|+||+|+..+........
T Consensus 226 ~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~ 302 (416)
T PRK15099 226 ITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLP 302 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH
Confidence 999999999999999996 889877653211 1111 2 23333 4 88888884 7889999999999999999
Q ss_pred HHHHHHHHHHhcccchhccccCch--hHHHHh
Q 036434 209 EAAIGSVALFCCRNVLAYLFNTDK--DVVNYV 238 (244)
Q Consensus 209 ~~~~~~~~~~~~~~~i~~lft~~~--~v~~~~ 238 (244)
++.......+++++++.++|..|+ +..+..
T Consensus 303 ~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~~~ 334 (416)
T PRK15099 303 AVAAASFTVWLLRDFAIWLLFSNKFTAMRDLF 334 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999999888765 344443
No 11
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.81 E-value=2.6e-17 Score=147.96 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=181.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+|+.++.+++++++..+.+++.+++ ..+.+.+...++.|++. ..|+++..+..|+..+....+.++|+++|.|.
T Consensus 72 ~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (488)
T TIGR02900 72 DRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKP 147 (488)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchH
Confidence 56889999999999999999987764 55677777777777754 35788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----cCCCcchHHHHHHHHHHHH------------H-------------hhhhHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSK-----TDFGNTGAELTIGISYWFN------------E-------------IFPSTKEF 129 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~-----~~~G~~G~a~at~i~~~~~------------~-------------~~~~~~~~ 129 (244)
++....++.++|+.++..++.. .++|+.|+++++.++.++. + +++.+|++
T Consensus 148 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l 227 (488)
T TIGR02900 148 PAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDL 227 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHH
Confidence 9999999999998887766543 2367888888887776554 0 12357899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cch-HHHHHHHH----HHH-HHhhhH-----H---HHHHHHhhhcCCC
Q 036434 130 SFFAHLSVVMFCLEWCSYEILVLLSGIL----PNP-KLETSVLT----IWY-LYRNPP-----L---CSTRVANELGAGN 191 (244)
Q Consensus 130 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~----g~~-~la~~~~~----i~~-~~~~~~-----~---~~~~v~~~~G~~~ 191 (244)
++.+.|..+++........+|+.++++. |.. ..+.+..+ ... ....|. + ..++++++.|+||
T Consensus 228 ~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~ 307 (488)
T TIGR02900 228 FSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKN 307 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999988764 211 11111111 111 111221 2 7899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhH
Q 036434 192 PEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDV 234 (244)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v 234 (244)
+|++|+..++.+..+..++...++.+..+++++.++|.++++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 350 (488)
T TIGR02900 308 YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDA 350 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 9999999999999999999999999999999999988766553
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.69 E-value=1.5e-13 Score=122.69 Aligned_cols=224 Identities=16% Similarity=0.123 Sum_probs=184.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 036434 2 YQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILL--GQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLIL 78 (244)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l--~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~ 78 (244)
.|+.++..++.+.....+++.++.+ +++++++.+.+ |.|+|..+.+.+++++..|..++.++...+.+.+|+++|..
T Consensus 49 ~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~ 128 (451)
T PF03023_consen 49 EEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFL 128 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 4667777777777777777776654 66889999887 66899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHH------------------H--hhhhHHHHHHHHHH
Q 036434 79 ALFLSSCATLCLQILLCWVLVSKTDFG---NTGAELTIGISYWFN------------------E--IFPSTKEFSFFAHL 135 (244)
Q Consensus 79 ~~~~~~~~~~~~n~~l~~~~i~~~~~G---~~G~a~at~i~~~~~------------------~--~~~~~~~~~~~~~p 135 (244)
.|....+..++.-+..-.++... .| +.+.++|..++.... . +.++.|+++|...|
T Consensus 129 ~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 206 (451)
T PF03023_consen 129 IPALSPLLFNLSIILSLLLLSNS--WGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIP 206 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHH
Confidence 99998888776655543333332 55 788899998888877 1 22458999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhhH-H--------HHHHHHhhhcCCCchhHHHHHHHHHHHH
Q 036434 136 SVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPP-L--------CSTRVANELGAGNPEPTRLSTCVVIFLA 206 (244)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~~~~~~~-~--------~~~~v~~~~G~~~~~~a~~~~~~~~~~~ 206 (244)
..+..........+++.+.+.+++.++++-.++.. .+..|. + .-|..+++..+||.++.|+..++++...
T Consensus 207 ~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~-l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~ 285 (451)
T PF03023_consen 207 LLLSSSISQINILVDRALASFLGEGSVSALNYAQR-LYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLI 285 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987764222222 455555 3 4577899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhccc
Q 036434 207 VAEAAIGSVALFCCRNVLAYLF 228 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~i~~lf 228 (244)
..+.+..++.+..+++++.++.
T Consensus 286 ~~i~iP~~~~~~~~a~~iV~ll 307 (451)
T PF03023_consen 286 LLILIPASIGLIVLAEPIVRLL 307 (451)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999998854
No 13
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.52 E-value=1.1e-12 Score=117.32 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=113.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+|++++..++++.++..++++.+. .+.+.+++.+++++|||+.+.+..|+++..++.++..+..+.++.+||.||++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~ 389 (456)
T PRK01766 310 RTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRV 389 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHH
Confidence 6899999999999999999999765 566899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 80 LFLSSCATL-CLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 80 ~~~~~~~~~-~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
+++.++.+. +++++++|++.+..++|+.|+++++.+++++.
T Consensus 390 ~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~ 431 (456)
T PRK01766 390 IFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAA 431 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHH
Confidence 999999988 78999999998877899999999999999987
No 14
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.52 E-value=1.7e-13 Score=122.92 Aligned_cols=121 Identities=18% Similarity=0.051 Sum_probs=104.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchh
Q 036434 122 IFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEP 194 (244)
Q Consensus 122 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~ 194 (244)
+++++|+++|+++|.+++++.+.....+|+.+++++|++++|+....... .+.++. + .++++||++|+||+|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 56789999999999999999999999999999999999988753322221 333334 4 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 195 TRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
+|+..+.++.++++++++..++.+ +.+++.++|+.|||+.+.+.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~ 132 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLH 132 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999998887766 568999999999999999999875
No 15
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.50 E-value=4.8e-13 Score=120.33 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHH
Q 036434 124 PSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTR 196 (244)
Q Consensus 124 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~ 196 (244)
+.+|+++|+++|.+++++.+.....+|+.+++++|++++|+....... .+.+.. + .++++||++|+||+|+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 448999999999999999999999999999999999888764333222 333333 3 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhcccc--CchhHHHHhhcccC
Q 036434 197 LSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFN--TDKDVVNYVSELVP 243 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft--~~~~v~~~~~~~l~ 243 (244)
+..+.++.+++.++++.+++.+.+++++.++|+ +|||+.+.+.+|++
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~ 154 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLE 154 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999995 79999999998875
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.48 E-value=5.2e-13 Score=119.30 Aligned_cols=121 Identities=17% Similarity=0.084 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhH
Q 036434 123 FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPT 195 (244)
Q Consensus 123 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a 195 (244)
.+..|+++|+++|..+.++.+.....+|+.++||++++++|+...+... .+.+.. + .+++++|++|+||++++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 3478999999999999999999999999999999998888754333222 222222 2 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 196 RLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
|+..+.+++++++.++.++++.+.+++++.+++++++|+.+.+.+|+.
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~ 140 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLR 140 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.48 E-value=5.5e-13 Score=118.80 Aligned_cols=121 Identities=14% Similarity=0.031 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchh
Q 036434 123 FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL-PNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEP 194 (244)
Q Consensus 123 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~ 194 (244)
+++.|+++|+++|..+++..+.....+|+.++|++ |++++|+....... .+.+.. + .++++||++|+||+|+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 57789999999999999999999999999999999 55567643222111 233333 3 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 195 TRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
+++..+.++.++++.++++..+...+.+++.++++.|||+.+.+.+|+.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~ 133 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLE 133 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
No 18
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.43 E-value=5.8e-12 Score=112.67 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=108.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQ-DPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLIL 78 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~-~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~ 78 (244)
|+||+++..+++++++...+++.+++ +.+.+++.++++. |||+.+.+.+|+++..++.|+..+..+.++++||.||++
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 68999999999999999999997765 5689999999995 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 79 ALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 79 ~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
.+++.+.....+|+++.|++... +|+.|+|+++.+++++.
T Consensus 386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~ 425 (453)
T PRK09575 386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIAL 425 (453)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHH
Confidence 99999998888899999888654 79999999999998876
No 19
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.42 E-value=1.9e-13 Score=104.99 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--H-HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434 135 LSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIW--Y-LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV 207 (244)
Q Consensus 135 p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~--~-~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~ 207 (244)
|.+++++.+...+.+++.+++++|++++++...... . .+.+.. + .++++|++.|+||+|++|+..+.++.++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 889999999999999999999999988875322211 1 333444 4 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhccccCchhHHHHhhcccCC
Q 036434 208 AEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA 244 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~~ 244 (244)
+++++..++.+.+++++.++|++|+|+.+.+.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~ 117 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRI 117 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCC
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchh
Confidence 9999999999999999999999999999999988764
No 20
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.36 E-value=6.4e-11 Score=107.00 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=107.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQ----DPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQS 75 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~----~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g 75 (244)
|+||.++..++++.....+++|.+. +..+++++.+++.. |+|..+.+..++++.+++.++..+...+.+.+++.|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g 374 (502)
T TIGR01695 295 NWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARK 374 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcc
Confidence 5788999999999999999999776 46688999988754 678899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 76 LILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 76 ~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
|+|.+++.++.+.++|++++++++.. +|..|+++|+.+++.+.
T Consensus 375 ~~~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~ 417 (502)
T TIGR01695 375 DTRTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVS 417 (502)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999865 78999999999998877
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.33 E-value=2.6e-09 Score=95.65 Aligned_cols=221 Identities=13% Similarity=0.027 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Q 036434 7 TYTYPAMFFCIAICIPISVL-WIFMDKVLILL-GQ--DPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFL 82 (244)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l-~~--~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 82 (244)
+..+........+.+..+++ ..+.+.+.+.+ +. |++....+....++..|.+++.++.....+.+|..++...|-+
T Consensus 88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~ 167 (518)
T COG0728 88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAF 167 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhh
Confidence 33333333444444455554 45677777444 33 3444447888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH------------------Hhh--hhHHHHHHHHHHHHHHHHH
Q 036434 83 SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN------------------EIF--PSTKEFSFFAHLSVVMFCL 142 (244)
Q Consensus 83 ~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~------------------~~~--~~~~~~~~~~~p~~~~~~~ 142 (244)
.-+.-++.-+.....+....+....+.+|++.++-..+ +++ +++|++.+...|..+....
T Consensus 168 aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~si 247 (518)
T COG0728 168 APVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSI 247 (518)
T ss_pred hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 98888877665666555543235677888887777666 122 5799999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhhH-H--------HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 036434 143 EWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPP-L--------CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIG 213 (244)
Q Consensus 143 ~~~~~~~~~~~~~~~g~~~la~~~~~i~~~~~~~~-~--------~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (244)
.+....+++.+.+.+.+.+.+.-.++-. ++++|. + .-+..|++..++|.++.++..+.++..++...+..
T Consensus 248 sQi~lli~~~iAS~l~~Gsis~l~YA~r-l~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~ 326 (518)
T COG0728 248 SQINLLIDTAIASFLAEGSVSWLYYADR-LYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPA 326 (518)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876653222222 788888 5 66889999999999999999999999999999999
Q ss_pred HHHHHhcccchhccc
Q 036434 214 SVALFCCRNVLAYLF 228 (244)
Q Consensus 214 ~~~~~~~~~~i~~lf 228 (244)
+..+.++++++.++.
T Consensus 327 ~~~l~~la~piv~~L 341 (518)
T COG0728 327 SAGLLVLAEPIVSLL 341 (518)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.26 E-value=2.7e-12 Score=98.50 Aligned_cols=97 Identities=19% Similarity=0.322 Sum_probs=92.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+||+++.++++++++.+++++..++ ..+.+++.++++.|+|+.+.+.+|+++..++.|+..+..+.++++||.||+|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 143 (162)
T PF01554_consen 64 DYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKI 143 (162)
T ss_dssp STTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCC
T ss_pred cccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHH
Confidence 68999999999999999999998875 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHH
Q 036434 80 LFLSSCATL-CLQILLCWV 97 (244)
Q Consensus 80 ~~~~~~~~~-~~n~~l~~~ 97 (244)
+++.++.+. ++|++++|+
T Consensus 144 ~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 144 AMYISIISFWIINIPLAYL 162 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhC
Confidence 999999999 999999985
No 23
>PRK10459 colanic acid exporter; Provisional
Probab=99.24 E-value=9.3e-09 Score=92.87 Aligned_cols=217 Identities=14% Similarity=0.042 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Q 036434 4 KIGTYTYPAMFFCIAICIPISVLWI-FMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFL 82 (244)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 82 (244)
+-++.....+++....++....+.+ +.+.+...+ .+||. ...+++..+..++..+....+..+|+..+.+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~ 146 (492)
T PRK10459 72 ISHLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAK 146 (492)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHH
Confidence 3356667777777777777655443 455555544 45543 35677778888888888889999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHHHHHHH
Q 036434 83 SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN-----------------EIFPSTKEFSFFAHLSVVMFCLEWC 145 (244)
Q Consensus 83 ~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~-----------------~~~~~~~~~~~~~~p~~~~~~~~~~ 145 (244)
......+........+.. .+.|+.+..+++.++..+. .+++.+|++++.+.|....+.....
T Consensus 147 ~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~ll~~~~~~~~~~~~~~~ 225 (492)
T PRK10459 147 IEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYL 225 (492)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCccceecHHHHHHHHhhhHHHHHHHHHHHH
Confidence 877777766666554443 4688888888887776543 1245689999999999999999999
Q ss_pred HHHHHHHHHhcC-CchHHHHHHHHHHH-HHhhhH-H--------HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 036434 146 SYEILVLLSGIL-PNPKLETSVLTIWY-LYRNPP-L--------CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGS 214 (244)
Q Consensus 146 ~~~~~~~~~~~~-g~~~la~~~~~i~~-~~~~~~-~--------~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~ 214 (244)
....|+.+++++ |+++++ .++... ....|. . .-|..++. ++|+++.|+..++........++..+
T Consensus 226 ~~~~d~~~lg~~lg~~~vG--~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 226 NTNIDTILIGRILGAEVLG--GYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HhcCchhhhhHhhchHhhh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 554443 333322 223333 2 33455553 67888999999999999999999999
Q ss_pred HHHHhcccchhccc-cC
Q 036434 215 VALFCCRNVLAYLF-NT 230 (244)
Q Consensus 215 ~~~~~~~~~i~~lf-t~ 230 (244)
..+.++++++..++ ++
T Consensus 302 ~~l~~~a~~ii~ll~g~ 318 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGE 318 (492)
T ss_pred HHHHHHhHHHHHHhcCh
Confidence 98899988887654 44
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.23 E-value=1.6e-09 Score=96.93 Aligned_cols=118 Identities=22% Similarity=0.203 Sum_probs=109.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLG----QDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQS 75 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~----~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g 75 (244)
|.++.++.+++++.....+.+|..+ +..+++++.+++. -|+|-.+....+++++++++|+..+...+.+.+.++|
T Consensus 270 d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~ 349 (451)
T PF03023_consen 270 DWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALG 349 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 5788999999999999999999876 5678999998874 4888899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 76 LILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 76 ~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
|+|.|+++++.+.++|+++++.++.. +|..|.++|+.++.+++
T Consensus 350 ~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~ 392 (451)
T PF03023_consen 350 DTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIIS 392 (451)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888776 89999999999999887
No 25
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.19 E-value=1.4e-08 Score=91.11 Aligned_cols=118 Identities=18% Similarity=0.276 Sum_probs=106.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLG----QDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQS 75 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~----~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g 75 (244)
|.++.++..++++.+..+..+|... +..+++|+.+.+. -++|..+....-+..++.+++++.+...+...+.+++
T Consensus 304 ~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~ 383 (518)
T COG0728 304 DWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARE 383 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 5678899999999999999999876 5678999998873 3778888889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 76 LILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 76 ~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
|+|.|+.+++++.++|+.+|+.+... +|..|.++++.++.|++
T Consensus 384 d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~ 426 (518)
T COG0728 384 DTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVN 426 (518)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHH
Confidence 99999999999999999999777665 77788999999998887
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.17 E-value=2.5e-09 Score=96.20 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=103.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+|+.++..++.+.....+++|.++ ...++++++..+..++ ++.+|+++.+++.++..+....++.+++.||+|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 382 (488)
T TIGR02900 307 NYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKV 382 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence 4678999999999999999999776 4667899998887554 3678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
+++.++.+.++|+++|+.++....+|+.|+++++.+++.+.
T Consensus 383 ~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~ 423 (488)
T TIGR02900 383 ALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLV 423 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 99999999999999999987444589999999999998877
No 27
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.90 E-value=1.5e-08 Score=87.06 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434 135 LSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV 207 (244)
Q Consensus 135 p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~ 207 (244)
|..+.+........+++.+++++|++++++....... ...++. + ..+.++++.|+||+|++++..+.+..+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 7788888999999999999999998776542221111 223333 3 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 208 AEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
..+++.+++.+.+++++.++|+.|++..+.+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 116 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLR 116 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999988888887776654
No 28
>PRK10459 colanic acid exporter; Provisional
Probab=98.79 E-value=1.4e-06 Score=78.80 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=98.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|.|+.++.+++.+.....+++|... +...+++++..+..++ .+.+...+++..+...+..+.......+++.|++|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~ 355 (492)
T PRK10459 278 DTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADL 355 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch
Confidence 4678899999999999999999776 5667899887764433 456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
++..+++.++++++..+.+... +|+.|+++++.+++.+.
T Consensus 356 ~~~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~ 394 (492)
T PRK10459 356 SFKWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIIN 394 (492)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHH
Confidence 9999999888888877766644 69999999999988766
No 29
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.67 E-value=2.5e-06 Score=64.15 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 51 AIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 51 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
+++.+++.++..+....++.+++.||+|.++..++.+.++|+++|+.++.. +|..|+++|+.+++...
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~ 69 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVS 69 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999866 89999999999999987
No 30
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.52 E-value=5.3e-05 Score=68.20 Aligned_cols=185 Identities=14% Similarity=0.050 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHh-hcCCCcchHHHHHHHHHHHH----
Q 036434 46 EACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVS-KTDFGNTGAELTIGISYWFN---- 120 (244)
Q Consensus 46 ~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~-~~~~G~~G~a~at~i~~~~~---- 120 (244)
.....+++.....+........++.+|+.++.+......+.. ..-...-..+.. ..+.+..+...+...+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (480)
T COG2244 115 VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILL 193 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888999999999999999999999998884444 111111111111 12234444444433322222
Q ss_pred -----------Hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHH-H-HHHHHH-HHhhhH-H---H
Q 036434 121 -----------EI--FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL-PNPKLET-S-VLTIWY-LYRNPP-L---C 179 (244)
Q Consensus 121 -----------~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~la~-~-~~~i~~-~~~~~~-~---~ 179 (244)
++ ++.+++.++.+.|..............|+.++++. |+++.+. + ...+.. ...+.. + .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l 273 (480)
T COG2244 194 GKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVL 273 (480)
T ss_pred HHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHH
Confidence 12 57889999999999999999999999999999986 4444431 1 111111 222222 2 7
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccc-cCc
Q 036434 180 STRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLF-NTD 231 (244)
Q Consensus 180 ~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf-t~~ 231 (244)
-|..++...+||.++.++..+.........+......+..+++++..++ +++
T Consensus 274 ~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~ 326 (480)
T COG2244 274 FPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK 326 (480)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc
Confidence 7999999999999999999999999999999999999999998887755 444
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=98.40 E-value=1.4e-05 Score=70.72 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=94.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+||.++..++.......++++.+.. .++++++.+++..|+ .+++.+++++..++.++...........-..++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999988887764 578899999886554 112566888877777777666666666668888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
.+...+...+++++++++++.. +|..|+++++.+++.+.
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~ 401 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVY 401 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHH
Confidence 8888888889999999999887 79999999999999876
No 32
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.32 E-value=0.00054 Score=56.28 Aligned_cols=104 Identities=19% Similarity=0.075 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH------------------
Q 036434 59 FGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN------------------ 120 (244)
Q Consensus 59 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~------------------ 120 (244)
+........+.++|+.++.+......+...+...+.-..++.. +.+..+..++..++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T PF01943_consen 120 ILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSF 198 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 5778888999999999999999999999888887776666654 233666666666655554
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHH
Q 036434 121 EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPN-PKLE 163 (244)
Q Consensus 121 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~la 163 (244)
++++..|+++|.+.|..............|..+++++.. ++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg 242 (273)
T PF01943_consen 199 FSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVG 242 (273)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHH
Confidence 135678999999999999999999999999999999744 4443
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.29 E-value=0.0008 Score=54.78 Aligned_cols=116 Identities=20% Similarity=0.113 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH------
Q 036434 47 ACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN------ 120 (244)
Q Consensus 47 a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~------ 120 (244)
...++....+..+.....+..++.++++++.+................-..+... +.+..+..++..++....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (251)
T PF13440_consen 90 LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNLWSILLAFIISALLALLISFY 168 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888999999999999999999999999999888874444444332 336666666666665544
Q ss_pred --------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHH
Q 036434 121 --------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGI-LPNPKLE 163 (244)
Q Consensus 121 --------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~la 163 (244)
+.....++.+|.+.|........+.....+..+++. +|.++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g 220 (251)
T PF13440_consen 169 LLRRKLRLSFKFSWRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVG 220 (251)
T ss_pred HhccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 111223458999999999999999999999999999 7776665
No 34
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.27 E-value=0.0001 Score=66.32 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=91.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+++.++..++.+.....+++|... +..+++++...+..++.. .+...+++..++.++..........+++.|+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~ 362 (480)
T COG2244 285 DRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRL 362 (480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 3566778999999999999999776 567788888765443321 2788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHH
Q 036434 80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTI 113 (244)
Q Consensus 80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at 113 (244)
.+..+..+.+.|.++|+.++.. .|..|++.++
T Consensus 363 ~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 363 LLLISLISALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred hHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 9999999999999999999876 5677777777
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.08 E-value=4.2e-05 Score=68.80 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH--H--HhhhH-H---HHHHHHhhhcCCCchh
Q 036434 123 FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY--L--YRNPP-L---CSTRVANELGAGNPEP 194 (244)
Q Consensus 123 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~--~--~~~~~-~---~~~~v~~~~G~~~~~~ 194 (244)
+++.|+..+++.|.......+.....+.+.++||+|+.++|+...+... . +.+-. + ..++.||..|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 4678999999999999999999999999999999999988865444422 2 22222 2 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhccc
Q 036434 195 TRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELV 242 (244)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l 242 (244)
...+.+++..+-...+.....+. .+.+++...++.||++.+.+..|.
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~ 150 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYA 150 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhH
Confidence 99999999888887777776654 455999999999999988877654
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.38 E-value=0.067 Score=45.24 Aligned_cols=126 Identities=16% Similarity=0.085 Sum_probs=93.2
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhh-cC------CCcc
Q 036434 35 ILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSK-TD------FGNT 107 (244)
Q Consensus 35 ~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~-~~------~G~~ 107 (244)
..++.||++.+.+++-+.++.+.=++..+...+++.+--+.++......++...+..+++...++.. ++ .|+.
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil 195 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPIL 195 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHH
Confidence 5779999999999999999998777889999999999888888887777777777777766666633 11 2222
Q ss_pred hHHHHH-------HHHHHHH-------------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCch
Q 036434 108 GAELTI-------GISYWFN-------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGI-LPNP 160 (244)
Q Consensus 108 G~a~at-------~i~~~~~-------------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~ 160 (244)
|.-.+. .+++|.. .+...++++++..+|.+.....+..+--+.+.+++| +|..
T Consensus 196 ~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 196 ALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 221111 2233333 122458899999999999999999999999999999 5554
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=95.75 E-value=0.44 Score=43.97 Aligned_cols=117 Identities=13% Similarity=-0.017 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHH
Q 036434 3 QKIGTYTYPAMFFCIAICIPISVLW-IFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALF 81 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 81 (244)
++..+.+...+.+...+|+.+..+- ..++.++++++.+.=..+.+.+-++++..-+|+++++.++-++.++..+++-..
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~ 418 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD 418 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence 4566777777788888887766653 457777877753222222346667777788889999999999999987766555
Q ss_pred H---HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 82 L---SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 82 ~---~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
. .+.+..++.+..+|+|+.. ++|..|.-+|.++...+-
T Consensus 419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lR 459 (549)
T PF04506_consen 419 RYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLR 459 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHH
Confidence 4 3344446667788999987 799999999888776665
No 38
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.81 E-value=0.69 Score=41.19 Aligned_cols=117 Identities=17% Similarity=0.034 Sum_probs=85.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434 2 YQKIGTYTYPAMFFCIAICIPISVLWI-FMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL 80 (244)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 80 (244)
.++..+++...+.....+|+.++.+-. .++..+.+.|.+.=....+..-+++++..+|+..+..+.-+++.+.++.+-.
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 455566666777777777766555533 4667777776544344456688899999999999999999999998776655
Q ss_pred HH---HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434 81 FL---SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 81 ~~---~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~ 120 (244)
-- .+++..++..+++|+++.. +|..|--+|.++.....
T Consensus 398 ~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lR 438 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLR 438 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHH
Confidence 43 5566667889999999988 56688888887766654
No 39
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=88.31 E-value=12 Score=32.08 Aligned_cols=115 Identities=12% Similarity=-0.039 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HHHHHHHHHHhhhH-H-----HHHHHHhhhcCCCchhHH
Q 036434 124 PSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLE-TSVLTIWYLYRNPP-L-----CSTRVANELGAGNPEPTR 196 (244)
Q Consensus 124 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la-~~~~~i~~~~~~~~-~-----~~~~v~~~~G~~~~~~a~ 196 (244)
.+.+++.+.-+|.+++...-..+=.+.+.-+++-.|++.. .+.+++. +.+.. + ..--+|-.+++++++ |
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA--~sL~lf~~sp~~~~~~igl~~V~s~rs--r 83 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLA--YSLMLFFASPLSMFHHIGLVFVNSKRS--R 83 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHH--HHHHHHHhChhhhhHHHHHHHhcchhh--h
Confidence 5678889999999998887777777888888876565432 2344442 22222 2 222233345555444 4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHH-Hhcccch-hccccCchhHHHHhhccc
Q 036434 197 LSTCVVIFLAVAEAAIG-SVAL-FCCRNVL-AYLFNTDKDVVNYVSELV 242 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i-~~lft~~~~v~~~~~~~l 242 (244)
+....++..+.++..++ .++. -.+.+.+ -.++..||++.+.++..+
T Consensus 84 r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~ 132 (345)
T PF07260_consen 84 RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAF 132 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444444333333322 2222 2233333 357788999988877643
No 40
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=77.97 E-value=11 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 036434 179 CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAI 212 (244)
Q Consensus 179 ~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~ 212 (244)
-+..+-...-+||+|+|++..+.+..++.+-..+
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred echhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 6677888899999999999999998887554433
No 41
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=73.31 E-value=19 Score=29.04 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=36.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCh---------HHHHHHHHHHHHHHHHHHHHH
Q 036434 2 YQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDP---------DFFVEACNYAIWLILTLFGYA 62 (244)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~---------~v~~~a~~yl~~~~~~~~~~~ 62 (244)
|+...+.+..++...+++-++++++.....+++.+|+.|. +..+-...|+++.+.++|...
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 3444445555555554444445555666778888887542 122335578888888887765
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=49.51 E-value=1.9e+02 Score=25.72 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=65.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434 2 YQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL 80 (244)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 80 (244)
.+++...++|++.-..-+-....+. ....+..+.+++.++- -.+-.++...+.........+-...-=..+-+..
T Consensus 319 ~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~ 394 (467)
T COG4267 319 LKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIA 394 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566677777777777666665554 4567888899987762 2222223333222222222222222223455666
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHH
Q 036434 81 FLSSCATLCLQILLCWVLVSK-TDFGNTGAELTIGISYWFN 120 (244)
Q Consensus 81 ~~~~~~~~~~n~~l~~~~i~~-~~~G~~G~a~at~i~~~~~ 120 (244)
+..+..-.+.|.++.+++... .++--.|...|.-+...+.
T Consensus 395 l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~ 435 (467)
T COG4267 395 LELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVA 435 (467)
T ss_pred hhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHH
Confidence 777777778899999888754 3333345566655554444
No 43
>PRK10484 putative transporter; Provisional
Probab=38.03 E-value=1.1e+02 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=22.8
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHHHH
Q 036434 179 CSTRVANELGAGNPEPTRLSTCVVIFLAVAE 209 (244)
Q Consensus 179 ~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~ 209 (244)
-+..+-+.+.+||.+.+||....+....+..
T Consensus 260 ~q~~~qR~~aak~~k~a~~~~~~~~~~~~~~ 290 (523)
T PRK10484 260 NQSIVQRALGAKNLAEGQKGALLAAFFKLLG 290 (523)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999876665444333
No 44
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=35.86 E-value=3.7e+02 Score=25.16 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 036434 124 PSTKEFSFFAHLSVVMFCLEWCSYE 148 (244)
Q Consensus 124 ~~~~~~~~~~~p~~~~~~~~~~~~~ 148 (244)
-.+.+++|.|+|.++.+...-..|.
T Consensus 651 ltF~~fF~~GfPmml~si~i~t~yL 675 (685)
T KOG2639|consen 651 LTFTQFFKVGFPMMLGSITIGTVYL 675 (685)
T ss_pred EEehhHHHhcccHHHHHHHHHHHHH
Confidence 3478999999999997765554444
No 45
>PHA00094 VI minor coat protein
Probab=35.49 E-value=1.4e+02 Score=21.18 Aligned_cols=50 Identities=18% Similarity=0.006 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 194 PTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
-.|..++....+++..++.++.......-.---.....|+..+.....+|
T Consensus 29 ~tk~iarn~liisl~igLil~~~~~l~~~l~~ls~vlP~d~~~~~~mvlP 78 (112)
T PHA00094 29 FTRGIARNALAISLFIGLILGLNSALVALLSDLASILPPDFVDAVSMVVP 78 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHhcC
Confidence 34556666666666666666555544422222233455666666666655
No 46
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=27.67 E-value=1.8e+02 Score=26.39 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=34.4
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 179 CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 179 ~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
..-...+.+.+||.+.+||....+......+...............+..-..|...-....+.+|
T Consensus 253 ~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~~~~p~l~~~~lp 317 (483)
T PRK09442 253 LPHTAVRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPDKVIPTLMLKVLP 317 (483)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHcC
Confidence 33456678899999999998776655444444433333322222112211234444444555554
No 47
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=27.36 E-value=2.3e+02 Score=22.55 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=32.7
Q ss_pred HHhhhH-H-HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036434 172 LYRNPP-L-CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFC 219 (244)
Q Consensus 172 ~~~~~~-~-~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
.+..|. + .+-.+++.+|+| +||+..+.+..........+-.....
T Consensus 36 ~~~yp~tfl~~Dii~E~yG~~---~A~~~V~~gf~~~i~~~~~~~~~~~l 82 (202)
T TIGR00697 36 NVYYPGTFLATDVLREIYGKK---DARKAIFVGFISALLFSVLTQLHLFF 82 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355566 5 888999999965 88888888877777766666555543
No 48
>PRK10739 putative antibiotic transporter; Provisional
Probab=26.27 E-value=3e+02 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHHcCCChHHHHHHH
Q 036434 25 VLWIFMDKVLILLGQDPDFFVEAC 48 (244)
Q Consensus 25 ~~~~~~~~il~~l~~~~~v~~~a~ 48 (244)
.+.++.+.+++.||.+-+..+.+.
T Consensus 53 ~f~~~G~~iL~~fGIsl~afrIAG 76 (197)
T PRK10739 53 VFLFAGEKILAFLNLRTETVSISG 76 (197)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 445567888888888877666554
No 49
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=25.59 E-value=2.5e+02 Score=22.94 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=34.0
Q ss_pred HhhhH-H-HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 036434 173 YRNPP-L-CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCR 221 (244)
Q Consensus 173 ~~~~~-~-~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (244)
+..|. + ++-++.+.+|++ .|||....++...++.+..+...+..-+
T Consensus 60 ~~yp~~Fl~tD~~~e~yG~~---~Ark~V~~gf~~~lv~~~l~~~~~~~~~ 107 (233)
T COG1738 60 FLYPFIFLATDLTVEIYGKK---EARKAVFLGFFSALVFSILTQIALHFPP 107 (233)
T ss_pred HHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555 4 677888999965 8888888888888888877776665553
No 50
>PF02378 PTS_EIIC: Phosphotransferase system, EIIC ; InterPro: IPR003352 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.; GO: 0005351 sugar:hydrogen symporter activity, 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3QNQ_B.
Probab=25.07 E-value=4.1e+02 Score=22.18 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=30.7
Q ss_pred cCCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036434 102 TDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCS 146 (244)
Q Consensus 102 ~~~G~~G~a~at~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 146 (244)
..+|..|+.+|..++.....+.+..|+.-|.+++.++.+..|-..
T Consensus 259 ~~~gg~g~~lal~~a~~~~~k~~~~~~~~~~~~~~~lfgI~Ep~~ 303 (322)
T PF02378_consen 259 AMFGGSGATLALLIAILLFSKSKQKKTIAKASLIPALFGINEPIL 303 (322)
T ss_dssp TSSSSSSSTHHHHHHHHHH--SHHHHHHHHHTCHHHHTT--HHHH
T ss_pred hhcccchhHHHHHHHHHHHcccccccccchhHHHHHhccCccHhH
Confidence 347777888887777666677788888999998877776666653
No 51
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=23.03 E-value=2.2e+02 Score=25.59 Aligned_cols=32 Identities=0% Similarity=-0.165 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 036434 182 RVANELGAGNPEPTRLSTCVVIFLAVAEAAIG 213 (244)
Q Consensus 182 ~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (244)
..-+...+||.+.+||....+...........
T Consensus 255 ~~~R~~aak~~~~a~~~~~~~~~~~~~~~~~~ 286 (471)
T TIGR02119 255 TAVRCMSYKDSKAMHRAMIIGTIVVGIIMLGM 286 (471)
T ss_pred HHHHHHhcCCHHHHhhhHhHHHHHHHHHHHHH
Confidence 34478899999999998877655444443333
No 52
>PHA03093 EEV glycoprotein; Provisional
Probab=22.02 E-value=1.3e+02 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036434 180 STRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVAL 217 (244)
Q Consensus 180 ~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+++.|+-+-.++...-+|+.+.++.+..+++++..+.+
T Consensus 16 sTiYG~klkkk~~~kk~r~i~i~~RisiiiSIlsL~~i 53 (185)
T PHA03093 16 STIYGDKLKKKKNKKKVKCIGICIRISIIISILSLIAI 53 (185)
T ss_pred eeeechhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666656788888888888888777654443
No 53
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=21.26 E-value=4.2e+02 Score=20.97 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=6.9
Q ss_pred HHHhcChhhHHHHHHH
Q 036434 70 NLQAQSLILALFLSSC 85 (244)
Q Consensus 70 ~l~~~g~~~~~~~~~~ 85 (244)
.++-.|.+...+-+.-
T Consensus 61 iL~~fgIsl~af~IaG 76 (203)
T PF01914_consen 61 ILNFFGISLPAFRIAG 76 (203)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 4444444444444333
No 54
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.25 E-value=1.7e+02 Score=17.39 Aligned_cols=30 Identities=10% Similarity=-0.199 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 036434 195 TRLSTCVVIFLAVAEAAIGSVALFCCRNVL 224 (244)
Q Consensus 195 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 224 (244)
.|+..+.-..+...+.+++.+++.++.+.+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444444455555444
No 55
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=20.63 E-value=6.5e+02 Score=23.23 Aligned_cols=82 Identities=11% Similarity=0.014 Sum_probs=48.5
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHH----HHHHHHHHHhhc----CCCc------chHHHHHHHHHHHH-----------
Q 036434 66 SLSHNLQAQSLILALFLSSCATLCL----QILLCWVLVSKT----DFGN------TGAELTIGISYWFN----------- 120 (244)
Q Consensus 66 ~~~~~l~~~g~~~~~~~~~~~~~~~----n~~l~~~~i~~~----~~G~------~G~a~at~i~~~~~----------- 120 (244)
+.+-.++..++++..+.....+..- |++..-.++... +.|. .-.|||..++....
T Consensus 378 ~i~~vl~~~~~~q~~~ilw~SgilSa~IDNVP~vatmIPvIk~l~~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsAN 457 (515)
T TIGR00774 378 IIDFVLAAEEKTQLALFYVFNGLLSSISDNVFVGTVYINEAKAALTEGLITREQFELLAVAINTGTNLPSVATPNGQAAF 457 (515)
T ss_pred HHHHHHcCCCccchHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHhccccccccHHHHHHH
Confidence 4566778888888887754444332 555555555431 2333 35566644433332
Q ss_pred -------H---hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036434 121 -------E---IFPSTKEFSFFAHLSVVMFCLEWCSY 147 (244)
Q Consensus 121 -------~---~~~~~~~~~~~~~p~~~~~~~~~~~~ 147 (244)
. ..-.+++++|.|.|..+....-...|
T Consensus 458 LVv~~iA~k~G~rISF~~flK~GlP~TLvsliVs~ly 494 (515)
T TIGR00774 458 LFLLTSALAPLIRLSYGRMVYMALPYTIVLAIVGLLG 494 (515)
T ss_pred HHHHHHHHhCCCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 23458899999999988765554433
No 56
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=20.47 E-value=3e+02 Score=24.16 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=24.9
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 036434 179 CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIG 213 (244)
Q Consensus 179 ~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~ 213 (244)
.+..+.+.+.+||.+.+||................
T Consensus 219 ~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~ 253 (407)
T TIGR00813 219 NQVIVQRCLAAKSAKHAKKGCLISGVLKLLPMFGA 253 (407)
T ss_pred CHHHhhHHHhcCCHHHHHHhHHHHHHHHHHHHHHH
Confidence 34557788999999999999887755544443333
Done!