Query 036434
Match_columns 244
No_of_seqs 138 out of 1454
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 21:51:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.3E-29 8E-34 222.4 16.4 243 1-243 83-361 (460)
2 3mkt_A Multi antimicrobial ext 99.4 8.2E-12 2.8E-16 109.8 14.5 120 1-120 309-435 (460)
3 2wdq_C Succinate dehydrogenase 10.3 2E+02 0.0069 19.8 2.9 24 192-215 103-126 (129)
4 3qnq_A PTS system, cellobiose- 9.1 8.6E+02 0.029 20.7 7.2 61 11-73 144-206 (442)
5 3dh4_A Sodium/glucose cotransp 8.5 2.8E+02 0.0097 24.2 3.8 26 180-205 239-264 (530)
6 2xq2_A Sodium/glucose cotransp 8.1 3.5E+02 0.012 23.9 4.2 28 181-208 269-296 (593)
7 1nkz_B Light-harvesting protei 5.9 4.3E+02 0.015 14.4 2.6 24 3-26 9-32 (41)
8 1jvr_A HTLV-II MA, MA, human T 5.9 3.4E+02 0.012 18.6 2.2 14 121-134 42-55 (137)
9 1g1e_B SIN3A; four-helix bundl 5.0 2.9E+02 0.0099 17.7 1.4 22 222-243 66-87 (89)
10 2kdc_A Diacylglycerol kinase; 4.9 8.4E+02 0.029 16.6 4.4 27 193-219 91-117 (121)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.96 E-value=2.3e-29 Score=222.37 Aligned_cols=243 Identities=17% Similarity=0.298 Sum_probs=217.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL 80 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 80 (244)
|+|+.++.+++++.+..+++++..++..+.++++.+++.|+|+.+.+..|+++..++.|+..+....++++|++||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 57889999999999999999997777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-c---CCCcchHHHHHHHHHHHH-------------------------HhhhhHHHHHH
Q 036434 81 FLSSCATLCLQILLCWVLVSK-T---DFGNTGAELTIGISYWFN-------------------------EIFPSTKEFSF 131 (244)
Q Consensus 81 ~~~~~~~~~~n~~l~~~~i~~-~---~~G~~G~a~at~i~~~~~-------------------------~~~~~~~~~~~ 131 (244)
++..+++.++|+++|++++++ + ++|+.|+++|+.+++++. ++++.+|+++|
T Consensus 163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (460)
T 3mkt_A 163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence 999999999999999999986 4 699999999999998876 02345789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHH
Q 036434 132 FAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIF 204 (244)
Q Consensus 132 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~ 204 (244)
.+.|..+++..+...+.+++.+++++|++++++....... .++++. + .++++++++|+||+|++|+..+.+..
T Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887754322222 344444 4 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434 205 LAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~ 243 (244)
.+..+++..++.+.++++++.++|++|+++.+.+.++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 361 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLL 361 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777664
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.37 E-value=8.2e-12 Score=109.78 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=112.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434 1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA 79 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 79 (244)
|+||.++..++++.....++++.++ +..+.+++.+++..|+|+.+.+..++++.+++.++..+.....+.+++.||+|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 388 (460)
T 3mkt_A 309 DTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTA 388 (460)
T ss_dssp CCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 6789999999999999999999776 567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhh----cC-CCcchHHHHHHHHHHHH
Q 036434 80 LFLSSCATL-CLQILLCWVLVSK----TD-FGNTGAELTIGISYWFN 120 (244)
Q Consensus 80 ~~~~~~~~~-~~n~~l~~~~i~~----~~-~G~~G~a~at~i~~~~~ 120 (244)
+++.++.+. ++|++++++++.. ++ +|+.|+++|+.+++.+.
T Consensus 389 ~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~ 435 (460)
T 3mkt_A 389 IFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAA 435 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHH
Confidence 999999998 9999999999987 67 99999999999998876
No 3
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=10.28 E-value=2e+02 Score=19.77 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 036434 192 PEPTRLSTCVVIFLAVAEAAIGSV 215 (244)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~~~~ 215 (244)
++.+++..+..+..+++.++..+.
T Consensus 103 ~~~~~~~~~~vl~~s~vlt~~~~~ 126 (129)
T 2wdq_C 103 FEAGKRSAKISFVITVVLSLLAGV 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888877777766543
No 4
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=9.07 E-value=8.6e+02 Score=20.66 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHH-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036434 11 PAMFFCIAICIPISVL-WIFMDKVLIL-LGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQA 73 (244)
Q Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~il~~-l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~ 73 (244)
++++.+.++++...-+ .++.+. ++ ...++++-+.-.+-.....|+.....+....+..++.
T Consensus 144 ~GlF~AIIvglls~~Iy~~~~k~--~~~IkmP~~VP~~V~~sF~~liP~~i~~~~~~~i~~~~~~ 206 (442)
T 3qnq_A 144 QGLFVAMIIAIISTEIYRFLVQK--KMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRLIFEH 206 (442)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHT--TCSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc--CeeeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665533 223321 11 2334455455555556666666555555555555543
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=8.50 E-value=2.8e+02 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.9
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHH
Q 036434 180 STRVANELGAGNPEPTRLSTCVVIFL 205 (244)
Q Consensus 180 ~~~v~~~~G~~~~~~a~~~~~~~~~~ 205 (244)
+..+-+.+++||.+++|+....+...
T Consensus 239 q~i~qR~laaks~k~ar~~~~~~~~~ 264 (530)
T 3dh4_A 239 QYIIQRTLAAKSVSEAQKGIVFAAFL 264 (530)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677789999999999976655444
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=8.09 E-value=3.5e+02 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=20.7
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 036434 181 TRVANELGAGNPEPTRLSTCVVIFLAVA 208 (244)
Q Consensus 181 ~~v~~~~G~~~~~~a~~~~~~~~~~~~~ 208 (244)
..+-+.+.+||.+++|+....+......
T Consensus 269 ~~~qR~laaks~k~ar~~~~~~~~~~~~ 296 (593)
T 2xq2_A 269 YIIQRTLAAKSVSEAQKGIVFAAFLALI 296 (593)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhheeCCHHHHHHHHHHHHHHHHH
Confidence 4566778999999999988766555333
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=5.89 E-value=4.3e+02 Score=14.36 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 036434 3 QKIGTYTYPAMFFCIAICIPISVL 26 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (244)
+|..+.+.+++..-..++++.-++
T Consensus 9 ~EfH~~~~~~~~~F~~iA~vAH~l 32 (41)
T 1nkz_B 9 EELHKYVIDGTRVFLGLALVAHFL 32 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555554443
No 8
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=5.88 E-value=3.4e+02 Score=18.58 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=12.0
Q ss_pred HhhhhHHHHHHHHH
Q 036434 121 EIFPSTKEFSFFAH 134 (244)
Q Consensus 121 ~~~~~~~~~~~~~~ 134 (244)
.|++.+|+++|+++
T Consensus 42 fDFhqLr~fLklAl 55 (137)
T 1jvr_A 42 FDFQQLRRFLKLAL 55 (137)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 58889999999885
No 9
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=5.00 E-value=2.9e+02 Score=17.73 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=16.8
Q ss_pred cchhccccCchhHHHHhhcccC
Q 036434 222 NVLAYLFNTDKDVVNYVSELVP 243 (244)
Q Consensus 222 ~~i~~lft~~~~v~~~~~~~l~ 243 (244)
..+..+|...|++++....+||
T Consensus 66 ~~V~~LF~~h~DLl~~F~~FLP 87 (89)
T 1g1e_B 66 AQVARLFKNQEDLLSEFGQFLP 87 (89)
T ss_dssp HHHHHHTTTCHHHHHHHHTTCC
T ss_pred HHHHHHHccCHHHHHHHHHHCc
Confidence 4456778888888888888877
No 10
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=4.89 E-value=8.4e+02 Score=16.55 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036434 193 EPTRLSTCVVIFLAVAEAAIGSVALFC 219 (244)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
++||+.+-.+..++.+.+.++....+.
T Consensus 91 k~AKD~aaaAVlv~~~~a~~v~~~i~~ 117 (121)
T 2kdc_A 91 GRAKDMGSAAVLIAIIVAVITWCILLW 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!