Query 036434
Match_columns 244
No_of_seqs 138 out of 1454
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 21:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba3 a.60.2.4 (A:410-464) T 21.0 20 0.0014 18.7 1.3 21 30-50 15-35 (55)
2 d1nekc_ f.21.2.2 (C:) Succinat 8.9 1.8E+02 0.013 18.3 3.9 27 191-217 102-128 (129)
3 d2fyuk1 f.23.15.1 (K:1-53) Sub 8.6 68 0.0049 17.3 1.2 29 183-211 2-30 (53)
4 d1jvra_ a.61.1.2 (A:) HTLV-II 6.2 1.7E+02 0.013 18.7 2.6 14 121-134 42-55 (137)
5 d2d5ba1 a.27.1.1 (A:349-500) M 5.9 2.2E+02 0.016 18.2 3.2 39 3-41 84-123 (152)
6 d2yvxa3 f.57.1.1 (A:276-448) M 5.2 4.4E+02 0.032 17.5 4.8 40 179-218 59-100 (173)
7 d1lghb_ f.3.1.1 (B:) Light-har 5.2 2.1E+02 0.016 14.5 2.1 23 3-25 12-34 (43)
8 d2uuia1 f.56.1.1 (A:2-147) Leu 5.0 4.2E+02 0.03 16.9 8.4 79 139-224 53-134 (146)
9 d2onkc1 f.58.1.1 (C:1-252) Mol 4.4 3.7E+02 0.027 18.3 3.9 41 179-219 157-197 (252)
10 d1ni9a_ e.7.1.2 (A:) Glycerol 4.0 4E+02 0.029 19.9 3.8 27 179-205 18-44 (328)
No 1
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=21.05 E-value=20 Score=18.71 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=16.4
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 036434 30 MDKVLILLGQDPDFFVEACNY 50 (244)
Q Consensus 30 ~~~il~~l~~~~~v~~~a~~y 50 (244)
++.+++.||.++.+.+.+..|
T Consensus 15 aerllrafgnpervkqlaref 35 (55)
T d2csba3 15 AERLLRAFGNPERVKQLAREF 35 (55)
T ss_dssp HHHHHHHHSSHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 466788899888888887755
No 2
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=1.8e+02 Score=18.28 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=18.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036434 191 NPEPTRLSTCVVIFLAVAEAAIGSVAL 217 (244)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+.+.+|+..+.....+++.++.....+
T Consensus 102 ~~~~~~~s~~~~~~~si~~s~~~~~~i 128 (129)
T d1nekc_ 102 TFEAGKRSAKISFVITVVLSLLAGVLV 128 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888877777777776665543
No 3
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.63 E-value=68 Score=17.28 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=20.7
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 036434 183 VANELGAGNPEPTRLSTCVVIFLAVAEAA 211 (244)
Q Consensus 183 v~~~~G~~~~~~a~~~~~~~~~~~~~~~~ 211 (244)
.++.+|.|..|-|+.-.......+.+-++
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 46778888888888887777666555443
No 4
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=6.20 E-value=1.7e+02 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=12.0
Q ss_pred HhhhhHHHHHHHHH
Q 036434 121 EIFPSTKEFSFFAH 134 (244)
Q Consensus 121 ~~~~~~~~~~~~~~ 134 (244)
.|++.+|+++|+++
T Consensus 42 ~DF~qLr~flklal 55 (137)
T d1jvra_ 42 FDFQQLRRFLKLAL 55 (137)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 58899999999885
No 5
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=5.85 E-value=2.2e+02 Score=18.16 Aligned_cols=39 Identities=13% Similarity=-0.000 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHcCCCh
Q 036434 3 QKIGTYTYPAMFFCIAICIPISVLWI-FMDKVLILLGQDP 41 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~~l~~~~ 41 (244)
++.++.++.++-..-.+++.+.+++- .++.+...+|.++
T Consensus 84 ~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~ 123 (152)
T d2d5ba1 84 EEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCc
Confidence 44455555544444444445555544 3577777777654
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.22 E-value=4.4e+02 Score=17.46 Aligned_cols=40 Identities=13% Similarity=-0.084 Sum_probs=25.3
Q ss_pred HHHHHHhhh--cCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036434 179 CSTRVANEL--GAGNPEPTRLSTCVVIFLAVAEAAIGSVALF 218 (244)
Q Consensus 179 ~~~~v~~~~--G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 218 (244)
.++++-+.+ |+-++++.++..++=+..++..+..++.+..
T Consensus 59 s~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~ 100 (173)
T d2yvxa3 59 SATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLV 100 (173)
T ss_dssp HHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 4446777777777777777777776665543
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.20 E-value=2.1e+02 Score=14.46 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 036434 3 QKIGTYTYPAMFFCIAICIPISV 25 (244)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (244)
+|..+.+.+++..-..++++.-+
T Consensus 12 ~EfH~~~~~g~~~F~~iAvvAHi 34 (43)
T d1lghb_ 12 IAVHDQFKTTFSAFIILAAVAHV 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655443
No 8
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.00 E-value=4.2e+02 Score=16.94 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=36.2
Q ss_pred HHHHHHHHH-HHHHHHHhcCCchHHHHHHHHHHHHHhhhH-H-HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036434 139 MFCLEWCSY-EILVLLSGILPNPKLETSVLTIWYLYRNPP-L-CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSV 215 (244)
Q Consensus 139 ~~~~~~~~~-~~~~~~~~~~g~~~la~~~~~i~~~~~~~~-~-~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~ 215 (244)
++..|+.-. .....+.+..+.+..+ +..+. .|.+.- + +.. + .++.+++..+..........+..+...++
T Consensus 53 ~N~~E~~P~fL~ll~l~~l~~~~~~a-~~lG~--~~~vgRi~ha~g---y-~~~~~kr~~g~~~~~~~~~~ll~~a~~gi 125 (146)
T d2uuia1 53 VNCSEYFPLFLATLWVAGIFFHEGAA-ALCGL--VYLFARLRYFQG---Y-ARSAQLRLAPLYASARALWLLVALAALGL 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHH-HHHHH--HHHHHHHHHHHH---H-HHCGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHhccCHHHH-HHHHH--HHHHHHHHHHHh---h-hcCcccCCcCchHHHHHHHHHHHHHHHHH
Confidence 455666543 3334444444444433 44555 333333 2 111 1 12333334444555555555556666666
Q ss_pred HHHhcccch
Q 036434 216 ALFCCRNVL 224 (244)
Q Consensus 216 ~~~~~~~~i 224 (244)
+..+.+..+
T Consensus 126 ~~~~l~~~~ 134 (146)
T d2uuia1 126 LAHFLPAAL 134 (146)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555443
No 9
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.36 E-value=3.7e+02 Score=18.31 Aligned_cols=41 Identities=20% Similarity=-0.019 Sum_probs=28.0
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036434 179 CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFC 219 (244)
Q Consensus 179 ~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
..--.++..|+++.++-+|...-...=+...+..+......
T Consensus 157 ~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~ 197 (252)
T d2onkc1 157 RLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGI 197 (252)
T ss_dssp HHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccccceEEEhHHhHHHHHHHHHHHHHHHH
Confidence 44557888999999999988766666665555554444333
No 10
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia coli [TaxId: 562]}
Probab=3.98 E-value=4e+02 Score=19.89 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=21.7
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHH
Q 036434 179 CSTRVANELGAGNPEPTRLSTCVVIFL 205 (244)
Q Consensus 179 ~~~~v~~~~G~~~~~~a~~~~~~~~~~ 205 (244)
+....+++.|+||++.|...+-.++.-
T Consensus 18 AAlaa~~~~G~Gdk~~aD~aAv~AMR~ 44 (328)
T d1ni9a_ 18 AALAGYKWLGRGDKNTADGAAVNAMRI 44 (328)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 556667889999999999988777654
Done!