BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036436
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 244 bits (622), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 161/471 (34%), Positives = 230/471 (48%), Gaps = 29/471 (6%)
Query: 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSV 64
+ + SPG GHL +VE K ++ H +I P S + S+ ++ SV
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP--PSKAQRTVLDSLPSSISSV 66
Query: 65 TFHQLPPPVSRIPDTLRSPADFPALVYELGELNNPNLHETLITISKRSNL-KAFVIDFLC 123
PPV L S + + +NP L + + + L A V+D
Sbjct: 67 FL----PPVDLT--DLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFG 120
Query: 124 NPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRELGSALLNFPGFPPFP 183
AF V+ +P Y ++ T +VL+ L+LP L + + FREL L+ PG P
Sbjct: 121 TDAFDVAVE-FHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLM-LPGCVPVA 178
Query: 184 ARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPGETLP 243
+D P DR+ YK L+ + ++ GI+VNTF L+ AIKA+ E PG P
Sbjct: 179 GKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE----PGLDKP 234
Query: 244 PLYCIGPVVXXXXXXXXXXXXHECLSWLDSKPSRXXXXXXXXXXXXXXXKQLKEMAIGLE 303
P+Y +GP+V ECL WLD++P +QL E+A+GL
Sbjct: 235 PVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLA 294
Query: 304 RSGVKFLWVVRAPAPDSVENRSSLES--------LLPEGFLDRTKDRGLVVESWAPQVEV 355
S +FLWV+R+P+ + N S +S LP GFL+RTK RG V+ WAPQ +V
Sbjct: 295 DSEQRFLWVIRSPS--GIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQV 352
Query: 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415
L H S GGF+THCGWNS LE V +G+P++AWPLYAEQKM ++ E+++ L R G
Sbjct: 353 LAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL---RPRAG 409
Query: 416 -DGLVSSAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXXXXDGGSSRVAL 465
DGLV E+ + V LM+ E+G+ D G+S AL
Sbjct: 410 DDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 227/481 (47%), Gaps = 46/481 (9%)
Query: 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII---IPTAPFVTSAGTDDYIASVSATA 61
++ +PG GHL S +E KL+ + I + P PF D YI SV A+
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPF-----ADSYIKSVLASQ 66
Query: 62 PSVTFHQLP---PPVSRIPDTLRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFV 118
P + LP PP P L +F L + E P++ T+ TI + + V
Sbjct: 67 PQIQLIDLPEVEPP----PQELLKSPEFYILTFL--ESLIPHVKATIKTILS-NKVVGLV 119
Query: 119 IDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRELGSALLNFPG 178
+DF C V + IP+Y + T+ L+ L L + LLN PG
Sbjct: 120 LDFFCVSMIDVGNE-FGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG 178
Query: 179 FP-PFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237
P+ + +++G Y + + GIIVNTF L++ +I A+ +
Sbjct: 179 ISNQVPSNVLPDACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD-- 235
Query: 238 PGETLPPLYCIGPVVXXXXXX--XXXXXXHE-CLSWLDSKPSRXXXXXXXXXXXXXXX-K 293
E +PP+Y +GP++ H+ L WLD +P +
Sbjct: 236 --EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 294 QLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLD--RTKDRGLVVESWAP 351
Q++E+A+GL+ SGV+FLW + S+ + + PEGFL+ + +G++ WAP
Sbjct: 294 QIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGMIC-GWAP 341
Query: 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAV-T 410
QVEVL H+++GGFV+HCGWNS+LE + GVP+L WP+YAEQ++ +V+E VGL +
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 411 RSEEGDGLVSSAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXXXXDGGSSRVALDNLVE 470
+G +V++ E+E+ + +LMD K DGGSS +++ L++
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459
Query: 471 S 471
Sbjct: 460 D 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 227/481 (47%), Gaps = 46/481 (9%)
Query: 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII---IPTAPFVTSAGTDDYIASVSATA 61
++ +PG GHL S +E KL+ + I + P PF D YI SV A+
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPF-----ADSYIKSVLASQ 66
Query: 62 PSVTFHQLP---PPVSRIPDTLRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFV 118
P + LP PP P L +F L + E P++ T+ TI + + V
Sbjct: 67 PQIQLIDLPEVEPP----PQELLKSPEFYILTFL--ESLIPHVKATIKTILS-NKVVGLV 119
Query: 119 IDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRELGSALLNFPG 178
+DF C V + IP+Y + T+ L+ L L + LLN PG
Sbjct: 120 LDFFCVSMIDVGNE-FGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG 178
Query: 179 FP-PFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237
P+ + +++G Y + + GIIVNTF L++ +I A+ +
Sbjct: 179 ISNQVPSNVLPDACFNKDGG-YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD-- 235
Query: 238 PGETLPPLYCIGPVVXXXXXX--XXXXXXHE-CLSWLDSKPSRXXXXXXXXXXXXXXX-K 293
E +PP+Y +GP++ H+ L WLD +P +
Sbjct: 236 --EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 294 QLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLD--RTKDRGLVVESWAP 351
Q++E+A+GL+ SGV+FLW + S+ + + PEGFL+ + +G++ WAP
Sbjct: 294 QIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGMIC-GWAP 341
Query: 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAV-T 410
QVEVL H+++GGFV+HCGWNS+LE + GVP+L WP+YAEQ++ +V+E VGL +
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 411 RSEEGDGLVSSAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXXXXDGGSSRVALDNLVE 470
+G +V++ E+E+ + +LMD K DGGSS +++ L++
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459
Query: 471 S 471
Sbjct: 460 D 460
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/497 (24%), Positives = 205/497 (41%), Gaps = 55/497 (11%)
Query: 2 KDTIVLYTSPGRGHLNSMVELGKLILT--YHPCFSIDIIIPTAPFVTSAGTDDYIASVSA 59
K +V+ P +GH+N + +L KL+ +H F ++ + S G +
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITF-VNTEYNHKRLLKSRGPKAFDGFTD- 65
Query: 60 TAPSVTFHQLPPPVSRIPDTLRSPADFPALVYELGELNNPNLHETLITISKRSNL---KA 116
F +P ++ + D P L + + E L ++ +N+
Sbjct: 66 ----FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTC 121
Query: 117 FVIDFLCNPAFQVSSST-LSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFRE------- 168
V D C +F + ++ +P YF+++ L ++ + + F++
Sbjct: 122 LVSD--CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNG 179
Query: 169 -LGSALLNFPGFPPFPARDMA--LPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQE 225
L + + PG F +D+ + + + + ++ ++ K I++NTF L+
Sbjct: 180 CLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES 239
Query: 226 RAIKAMLEGQCIPGETLPPLYCIGPVVXXXXXXXXXXXXH-----------ECLSWLDSK 274
I A+ T+P +Y IGP+ ECL WL+SK
Sbjct: 240 DVINAL-------SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESK 292
Query: 275 PSRXXXXXXXXXXXXXXXKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEG 334
+QL E A GL FLW++R PD V S + S
Sbjct: 293 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR---PDLVIGGSVIFS---SE 346
Query: 335 FLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKM 394
F + DRGL+ SW PQ +VLNH S+GGF+THCGWNS E +CAGVPML WP +A+Q
Sbjct: 347 FTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPT 405
Query: 395 IKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRXXXXXXXXXXXXXXXX 454
+ E ++G+ + D V EL + ++E++ +KG+
Sbjct: 406 DCRFICNEWEIGMEI------DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459
Query: 455 XXDGGSSRVALDNLVES 471
GG S + L+ +++
Sbjct: 460 TRPGGCSYMNLNKVIKD 476
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 29/265 (10%)
Query: 176 FPGFPPFPARDMALP---MHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAML 232
PGFP A D LP + D + L G+++ ++ + +N+F I ++
Sbjct: 179 LPGFPELKASD--LPEGVIKDIDVPFATMLHKMGLELPRANAVAINSF-----ATIHPLI 231
Query: 233 EGQCIPGETLPPLYCIGPVVXXXXXXXXXXXXHECLSWLDSKPSRXXXXXXXXXXXXXXX 292
E + L +GP H CL WLD +
Sbjct: 232 ENEL--NSKFKLLLNVGPF-NLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPP 288
Query: 293 KQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQ 352
+L +A LE G F+W R + LP+GFL+RTK +G +V +WAPQ
Sbjct: 289 HELTALAESLEECGFPFIWSFRGDPKEK----------LPKGFLERTKTKGKIV-AWAPQ 337
Query: 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412
VE+L H SVG F+TH GWNSVLE + GVPM++ P + +Q + + +++G+ V
Sbjct: 338 VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD-- 395
Query: 413 EEGDGLVSSAELEQRVSELMDSEKG 437
+G+++ +++ + M SEKG
Sbjct: 396 ---NGVLTKESIKKALELTMSSEKG 417
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 45/310 (14%)
Query: 142 FTTAG-SVLAANLYLPTLHKNTTKS-FRELGSALLNF-PGFPPFPARDMALPMHDREGKV 198
F TAG + L+ ++Y+ + + S + LLNF PG RD+ +EG V
Sbjct: 139 FWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDL------QEGIV 192
Query: 199 YKGLVD--------TGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPGETLPPLYCIGP 250
+ L G + K+ + +N+FE L + ++ L+ + + P I P
Sbjct: 193 FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDD-SLTNDLKSKLKTYLNIGPFNLITP 251
Query: 251 --VVXXXXXXXXXXXXHECLSWLDSKPSRXXXXXXXXXXXXXXXKQLKEMAIGLERSGVK 308
VV CL WL + ++ ++ LE S V
Sbjct: 252 PPVVPNTTG---------CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVP 302
Query: 309 FLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHC 368
F+W +R A LPEGFL++T+ G+VV WAPQ EVL HE+VG FVTHC
Sbjct: 303 FIWSLRDKA----------RVHLPEGFLEKTRGYGMVV-PWAPQAEVLAHEAVGAFVTHC 351
Query: 369 GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRV 428
GWNS+ E V GVP++ P + +Q++ +V + +++G+ + EG G+ + + L
Sbjct: 352 GWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI----EG-GVFTKSGLMSCF 406
Query: 429 SELMDSEKGR 438
+++ EKG+
Sbjct: 407 DQILSQEKGK 416
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKV 405
V W PQ+++L S F+TH G S +E + VPM+A P AEQ M +V E+ +
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 406 GLAVTRSE 413
G + R +
Sbjct: 366 GRHIPRDQ 373
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 349 WAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392
W PQ ++L H F+TH G N + E + G+P + PL+A+Q
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392
V W PQ+ +L + FVTH G EG+ PM+A P +Q
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP 387
+ESW PQ +L H + V H G + L + AGVP L++P
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 347 ESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG 406
W P VL H +TH +VLE AGVP++ P +A + A V E+ +G
Sbjct: 286 HQWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343
>pdb|1Y07|A Chain A, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|B Chain B, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|C Chain C, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|D Chain D, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
Length = 128
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV 355
+E++ L++ F + APA SV S + +P G +D K++ + P VEV
Sbjct: 3 RELSFFLQKESAGFFLGMDAPAGSSVACGSEVLRAVPVGTVDAAKEKHI------PVVEV 56
Query: 356 LNHE 359
HE
Sbjct: 57 HGHE 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,764,532
Number of Sequences: 62578
Number of extensions: 492731
Number of successful extensions: 1380
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1344
Number of HSP's gapped (non-prelim): 19
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)