Query 036436
Match_columns 485
No_of_seqs 130 out of 1497
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00164 glucosyltransferase; 100.0 3.5E-68 7.7E-73 539.5 47.7 469 2-480 3-479 (480)
2 PLN03004 UDP-glycosyltransfera 100.0 7.1E-68 1.5E-72 529.6 41.7 445 2-463 3-450 (451)
3 PLN02992 coniferyl-alcohol glu 100.0 2.4E-67 5.1E-72 528.4 45.2 452 2-475 5-470 (481)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.2E-67 1.8E-71 524.2 46.2 437 3-474 8-450 (451)
5 PLN03015 UDP-glucosyl transfer 100.0 1.3E-66 2.9E-71 519.8 44.7 456 1-472 1-466 (470)
6 PLN02173 UDP-glucosyl transfer 100.0 1.8E-66 3.9E-71 519.2 45.6 425 3-473 6-447 (449)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.2E-66 1.1E-70 521.9 45.3 449 3-478 10-475 (477)
8 PLN02555 limonoid glucosyltran 100.0 7.4E-66 1.6E-70 519.0 45.5 452 3-475 8-470 (480)
9 PLN02207 UDP-glycosyltransfera 100.0 7.4E-66 1.6E-70 516.7 44.5 452 1-474 1-465 (468)
10 PLN02208 glycosyltransferase f 100.0 4.6E-65 1E-69 510.3 45.0 424 2-475 4-440 (442)
11 PLN02210 UDP-glucosyl transfer 100.0 6.7E-65 1.5E-69 512.4 45.2 431 3-474 9-455 (456)
12 PLN02554 UDP-glycosyltransfera 100.0 8E-65 1.7E-69 517.0 43.9 456 1-475 1-479 (481)
13 PLN02562 UDP-glycosyltransfera 100.0 1.3E-64 2.9E-69 509.7 44.3 431 3-473 7-448 (448)
14 PLN02534 UDP-glycosyltransfera 100.0 1.6E-64 3.6E-69 509.8 44.2 449 3-475 9-487 (491)
15 PLN02448 UDP-glycosyltransfera 100.0 2.5E-64 5.5E-69 511.6 45.4 437 2-476 10-459 (459)
16 PLN00414 glycosyltransferase f 100.0 3.1E-64 6.8E-69 504.8 44.2 424 2-475 4-441 (446)
17 PLN02152 indole-3-acetate beta 100.0 4.2E-64 9.2E-69 503.0 44.4 436 1-472 1-454 (455)
18 PLN02764 glycosyltransferase f 100.0 5.7E-64 1.2E-68 499.5 44.2 428 2-475 5-446 (453)
19 PLN02670 transferase, transfer 100.0 4.8E-64 1E-68 504.1 43.1 442 3-476 7-467 (472)
20 PLN02167 UDP-glycosyltransfera 100.0 6E-64 1.3E-68 509.8 44.2 453 3-475 4-473 (475)
21 PLN03007 UDP-glucosyltransfera 100.0 8.3E-64 1.8E-68 510.3 44.4 450 2-475 5-481 (482)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.5E-45 7.7E-50 373.9 29.5 396 4-475 22-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 9.9E-46 2.1E-50 384.0 10.3 383 4-454 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 3.6E-42 7.8E-47 346.4 28.6 383 8-472 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.8E-41 3.8E-46 342.8 23.1 386 3-469 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 6.1E-39 1.3E-43 319.5 24.6 387 3-473 2-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 6.5E-40 1.4E-44 340.5 18.2 409 3-452 6-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 3E-26 6.5E-31 225.5 30.1 322 3-446 2-335 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 1.2E-23 2.5E-28 204.7 29.1 324 3-447 1-338 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 8.3E-24 1.8E-28 207.0 26.3 302 4-431 2-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 2.2E-21 4.8E-26 189.6 26.3 124 278-436 189-316 (321)
32 PRK00726 murG undecaprenyldiph 99.8 8E-18 1.7E-22 167.4 31.2 344 2-473 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 9.9E-17 2.1E-21 159.1 29.6 314 4-436 1-326 (350)
34 COG4671 Predicted glycosyl tra 99.7 9.8E-16 2.1E-20 142.2 25.8 340 3-435 10-366 (400)
35 TIGR00215 lpxB lipid-A-disacch 99.7 3.2E-16 6.9E-21 156.6 22.5 351 3-470 6-384 (385)
36 TIGR01133 murG undecaprenyldip 99.7 7.4E-15 1.6E-19 145.5 29.3 78 351-436 243-323 (348)
37 PRK13609 diacylglycerol glucos 99.7 5.7E-15 1.2E-19 148.2 20.9 135 276-436 201-340 (380)
38 TIGR03590 PseG pseudaminic aci 99.6 1.5E-14 3.2E-19 138.0 20.6 104 278-398 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 2.4E-14 5.1E-19 143.8 22.8 108 352-473 255-376 (380)
40 PRK13608 diacylglycerol glucos 99.6 5.6E-13 1.2E-17 134.0 22.8 172 276-481 201-380 (391)
41 PLN02605 monogalactosyldiacylg 99.5 2.3E-12 5E-17 129.3 24.7 113 342-473 265-380 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 1.8E-15 3.8E-20 133.4 1.2 136 279-436 1-146 (167)
43 TIGR03492 conserved hypothetic 99.5 2.3E-11 5E-16 121.8 27.5 195 243-470 180-394 (396)
44 cd03814 GT1_like_2 This family 99.3 3E-09 6.4E-14 105.3 30.7 110 341-472 246-363 (364)
45 PF03033 Glyco_transf_28: Glyc 99.3 1.8E-13 4E-18 116.7 -0.5 125 5-149 1-135 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 1.9E-08 4.1E-13 103.8 33.8 141 279-448 264-415 (465)
47 cd03794 GT1_wbuB_like This fam 99.2 6.3E-08 1.4E-12 96.4 32.8 353 4-448 1-380 (394)
48 cd03800 GT1_Sucrose_synthase T 99.2 6.9E-08 1.5E-12 97.2 31.6 92 341-446 282-381 (398)
49 COG3980 spsG Spore coat polysa 99.2 1.7E-09 3.6E-14 98.2 17.3 135 278-436 159-295 (318)
50 cd03817 GT1_UGDG_like This fam 99.1 8.2E-08 1.8E-12 95.1 30.0 94 341-449 258-359 (374)
51 cd03823 GT1_ExpE7_like This fa 99.1 1.1E-07 2.4E-12 93.7 30.8 82 341-436 242-331 (359)
52 cd03808 GT1_cap1E_like This fa 99.1 7.6E-07 1.7E-11 87.4 34.0 331 4-447 1-343 (359)
53 cd03801 GT1_YqgM_like This fam 99.1 6.1E-07 1.3E-11 88.3 32.7 82 341-436 255-343 (374)
54 cd04962 GT1_like_5 This family 99.1 2.9E-07 6.3E-12 91.8 30.5 111 342-473 253-369 (371)
55 PRK05749 3-deoxy-D-manno-octul 99.1 1.5E-07 3.2E-12 96.0 27.7 103 352-472 313-421 (425)
56 cd03818 GT1_ExpC_like This fam 99.1 1.2E-06 2.5E-11 88.6 33.9 94 341-448 280-381 (396)
57 cd03816 GT1_ALG1_like This fam 99.0 4.4E-07 9.6E-12 92.1 30.3 91 342-448 294-399 (415)
58 PRK10307 putative glycosyl tra 99.0 4.3E-06 9.3E-11 84.9 36.2 162 279-475 230-408 (412)
59 cd03798 GT1_wlbH_like This fam 99.0 1.4E-06 3E-11 86.0 31.5 82 341-436 258-346 (377)
60 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 7.5E-08 1.6E-12 96.0 20.9 132 277-436 198-339 (363)
61 cd03795 GT1_like_4 This family 99.0 1.4E-06 2.9E-11 86.3 29.4 147 279-448 192-347 (357)
62 cd03820 GT1_amsD_like This fam 98.9 1.8E-06 3.9E-11 84.3 29.4 94 342-448 235-334 (348)
63 TIGR00236 wecB UDP-N-acetylglu 98.9 1.7E-07 3.6E-12 93.6 20.1 106 342-470 255-363 (365)
64 cd03805 GT1_ALG2_like This fam 98.9 7.4E-06 1.6E-10 82.5 31.7 92 341-447 279-378 (392)
65 TIGR03449 mycothiol_MshA UDP-N 98.8 2.7E-05 5.9E-10 78.8 34.9 92 342-447 283-382 (405)
66 PF04007 DUF354: Protein of un 98.8 2.9E-06 6.3E-11 82.2 25.6 104 12-144 9-112 (335)
67 cd03796 GT1_PIG-A_like This fa 98.8 8.2E-06 1.8E-10 82.4 29.8 112 342-475 250-368 (398)
68 cd03819 GT1_WavL_like This fam 98.8 9.7E-06 2.1E-10 80.2 29.3 94 342-449 246-347 (355)
69 cd03821 GT1_Bme6_like This fam 98.8 1.2E-05 2.6E-10 79.5 29.7 91 341-447 261-359 (375)
70 TIGR02472 sucr_P_syn_N sucrose 98.8 3E-05 6.4E-10 79.4 32.8 111 341-471 316-437 (439)
71 cd05844 GT1_like_7 Glycosyltra 98.8 1E-05 2.2E-10 80.5 28.8 92 341-446 244-349 (367)
72 cd03799 GT1_amsK_like This is 98.8 1.3E-05 2.8E-10 79.2 28.8 82 341-436 235-329 (355)
73 cd03811 GT1_WabH_like This fam 98.8 6.3E-06 1.4E-10 80.6 26.3 82 341-436 245-334 (353)
74 cd03825 GT1_wcfI_like This fam 98.8 3.2E-05 6.9E-10 76.7 31.3 111 342-473 244-363 (365)
75 cd04951 GT1_WbdM_like This fam 98.8 1.6E-05 3.4E-10 78.7 29.0 78 342-435 245-327 (360)
76 cd03822 GT1_ecORF704_like This 98.7 2.2E-05 4.8E-10 77.6 29.7 108 341-471 246-364 (366)
77 COG1519 KdtA 3-deoxy-D-manno-o 98.7 4.1E-05 9E-10 74.6 27.7 332 10-452 56-405 (419)
78 cd03812 GT1_CapH_like This fam 98.7 2.7E-05 5.9E-10 77.1 27.5 81 341-436 248-333 (358)
79 TIGR02470 sucr_synth sucrose s 98.6 0.00037 8.1E-09 74.6 36.4 92 342-445 619-725 (784)
80 cd03807 GT1_WbnK_like This fam 98.6 0.00016 3.5E-09 71.1 32.1 79 342-436 251-334 (365)
81 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00046 1E-08 75.7 35.6 115 341-475 547-671 (1050)
82 TIGR03087 stp1 sugar transfera 98.6 9.7E-05 2.1E-09 74.6 29.2 109 341-472 279-394 (397)
83 PRK14089 ipid-A-disaccharide s 98.5 1.4E-06 3E-11 85.2 13.9 182 243-469 144-345 (347)
84 TIGR03088 stp2 sugar transfera 98.5 0.00033 7.2E-09 70.0 31.5 111 342-473 255-371 (374)
85 PF02350 Epimerase_2: UDP-N-ac 98.5 1.2E-06 2.7E-11 86.1 13.4 133 275-436 178-320 (346)
86 PRK01021 lpxB lipid-A-disaccha 98.5 4.6E-05 9.9E-10 78.4 24.4 189 243-452 381-590 (608)
87 PRK15427 colanic acid biosynth 98.5 0.00022 4.8E-09 72.2 29.6 113 341-474 278-405 (406)
88 KOG3349 Predicted glycosyltran 98.5 7E-07 1.5E-11 73.3 8.6 121 279-413 5-136 (170)
89 PRK09922 UDP-D-galactose:(gluc 98.5 5.6E-05 1.2E-09 75.3 24.3 147 279-449 181-342 (359)
90 cd04955 GT1_like_6 This family 98.5 0.00029 6.3E-09 69.7 29.1 154 281-471 196-361 (363)
91 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 1E-05 2.2E-10 80.5 18.4 130 277-432 201-337 (365)
92 cd03802 GT1_AviGT4_like This f 98.5 0.0003 6.6E-09 68.8 28.5 129 280-435 173-309 (335)
93 PRK15179 Vi polysaccharide bio 98.4 0.0012 2.6E-08 70.6 33.8 112 341-471 573-690 (694)
94 PF02684 LpxB: Lipid-A-disacch 98.4 4.9E-05 1.1E-09 74.8 21.6 189 243-461 153-364 (373)
95 cd03809 GT1_mtfB_like This fam 98.4 0.00014 3E-09 71.9 24.0 80 341-436 252-338 (365)
96 PLN00142 sucrose synthase 98.4 0.00075 1.6E-08 72.5 30.4 90 342-445 642-748 (815)
97 TIGR02149 glgA_Coryne glycogen 98.4 0.00092 2E-08 67.1 29.5 168 279-473 202-385 (388)
98 cd03806 GT1_ALG11_like This fa 98.2 0.00059 1.3E-08 69.4 25.3 80 342-436 305-394 (419)
99 PLN02275 transferase, transfer 98.2 0.0043 9.4E-08 62.0 30.2 75 342-432 286-371 (371)
100 COG0381 WecB UDP-N-acetylgluco 98.1 0.00045 9.8E-09 66.9 20.4 359 1-472 1-372 (383)
101 PLN02846 digalactosyldiacylgly 98.1 0.0054 1.2E-07 62.4 28.1 102 345-475 287-392 (462)
102 cd03791 GT1_Glycogen_synthase_ 98.1 0.0016 3.6E-08 67.4 24.9 134 278-433 296-441 (476)
103 PRK00654 glgA glycogen synthas 98.1 0.0014 3.1E-08 67.6 24.3 77 347-433 343-427 (466)
104 PLN02949 transferase, transfer 98.0 0.012 2.6E-07 60.4 29.8 112 341-474 334-456 (463)
105 COG0763 LpxB Lipid A disacchar 98.0 0.0017 3.6E-08 62.9 21.9 199 244-472 157-379 (381)
106 cd03792 GT1_Trehalose_phosphor 97.9 0.0046 1E-07 61.8 24.0 110 342-474 252-371 (372)
107 TIGR02918 accessory Sec system 97.9 0.0064 1.4E-07 63.0 25.4 103 342-451 376-484 (500)
108 cd04949 GT1_gtfA_like This fam 97.9 0.0027 5.8E-08 63.4 22.2 99 342-451 261-363 (372)
109 cd04950 GT1_like_1 Glycosyltra 97.9 0.038 8.1E-07 55.3 31.9 80 341-436 253-342 (373)
110 PF00534 Glycos_transf_1: Glyc 97.8 0.00029 6.2E-09 61.9 11.5 91 341-445 72-170 (172)
111 PLN02501 digalactosyldiacylgly 97.8 0.0054 1.2E-07 64.3 21.9 76 344-436 603-683 (794)
112 COG5017 Uncharacterized conser 97.8 0.0004 8.7E-09 56.3 10.6 110 280-413 2-125 (161)
113 cd04946 GT1_AmsK_like This fam 97.7 0.001 2.2E-08 67.4 16.0 111 341-469 288-406 (407)
114 TIGR02095 glgA glycogen/starch 97.7 0.038 8.2E-07 57.2 27.4 113 342-473 346-471 (473)
115 PLN02316 synthase/transferase 97.6 0.18 3.9E-06 56.1 31.9 116 343-472 901-1031(1036)
116 PRK15490 Vi polysaccharide bio 97.6 0.11 2.4E-06 53.8 28.2 114 341-474 454-575 (578)
117 cd03813 GT1_like_3 This family 97.6 0.031 6.6E-07 57.9 24.8 92 341-445 353-454 (475)
118 cd03804 GT1_wbaZ_like This fam 97.6 0.00051 1.1E-08 68.0 11.1 127 280-435 197-327 (351)
119 PRK15484 lipopolysaccharide 1, 97.6 0.0053 1.1E-07 61.6 18.2 113 342-474 257-377 (380)
120 PF13844 Glyco_transf_41: Glyc 97.5 0.0016 3.5E-08 65.7 13.3 176 275-474 282-466 (468)
121 PF13692 Glyco_trans_1_4: Glyc 97.4 0.001 2.2E-08 55.7 8.7 80 341-434 52-135 (135)
122 PRK10017 colanic acid biosynth 97.4 0.21 4.5E-06 50.6 31.2 102 353-474 322-424 (426)
123 COG1817 Uncharacterized protei 97.0 0.26 5.7E-06 46.5 21.0 109 9-145 6-114 (346)
124 PRK09814 beta-1,6-galactofuran 96.7 0.015 3.3E-07 57.1 11.2 110 342-470 207-331 (333)
125 cd01635 Glycosyltransferase_GT 96.7 0.26 5.5E-06 44.6 18.6 49 341-391 160-216 (229)
126 COG3914 Spy Predicted O-linked 96.3 0.19 4.1E-06 51.3 15.6 134 275-429 427-573 (620)
127 PHA01633 putative glycosyl tra 96.2 0.17 3.6E-06 49.5 14.7 85 342-435 201-308 (335)
128 PRK10125 putative glycosyl tra 96.2 1.7 3.8E-05 43.9 28.8 114 280-428 243-365 (405)
129 KOG4626 O-linked N-acetylgluco 96.1 0.2 4.3E-06 51.5 14.8 154 243-411 726-889 (966)
130 PRK14098 glycogen synthase; Pr 95.9 0.16 3.5E-06 52.7 13.7 80 341-432 361-449 (489)
131 PF06722 DUF1205: Protein of u 95.8 0.016 3.5E-07 45.3 4.8 55 262-316 25-84 (97)
132 TIGR02193 heptsyl_trn_I lipopo 95.8 0.64 1.4E-05 45.3 16.9 40 4-43 1-40 (319)
133 PRK10422 lipopolysaccharide co 95.7 1.7 3.6E-05 43.1 19.9 40 2-41 5-44 (352)
134 cd03789 GT1_LPS_heptosyltransf 95.1 2.7 5.9E-05 40.0 18.5 38 4-41 1-38 (279)
135 PF13477 Glyco_trans_4_2: Glyc 95.0 0.26 5.7E-06 41.2 10.1 101 4-141 1-105 (139)
136 TIGR02201 heptsyl_trn_III lipo 94.7 4.6 0.0001 39.7 19.5 108 4-141 1-109 (344)
137 PHA01630 putative group 1 glyc 94.4 2.7 5.9E-05 41.2 16.8 111 349-474 197-330 (331)
138 PF13524 Glyco_trans_1_2: Glyc 93.8 0.7 1.5E-05 35.6 9.1 82 367-469 9-91 (92)
139 PF13579 Glyco_trans_4_4: Glyc 93.5 0.19 4.1E-06 42.7 6.1 97 18-143 6-104 (160)
140 TIGR02195 heptsyl_trn_II lipop 93.1 8.8 0.00019 37.5 18.0 38 4-41 1-38 (334)
141 TIGR02400 trehalose_OtsA alpha 92.9 1.4 3.1E-05 45.2 12.2 103 348-473 342-455 (456)
142 PF06258 Mito_fiss_Elm1: Mitoc 92.9 3.6 7.7E-05 39.9 14.3 60 350-412 220-283 (311)
143 PRK10964 ADP-heptose:LPS hepto 92.7 7.2 0.00016 37.9 16.6 38 4-41 2-39 (322)
144 PF12000 Glyco_trans_4_3: Gkyc 92.5 1.5 3.3E-05 38.2 10.0 31 112-143 65-96 (171)
145 PLN02939 transferase, transfer 91.7 6 0.00013 43.9 15.5 83 342-433 837-930 (977)
146 COG0859 RfaF ADP-heptose:LPS h 91.6 14 0.00031 36.1 18.6 40 3-42 2-41 (334)
147 PRK10916 ADP-heptose:LPS hepto 91.3 16 0.00035 36.0 20.0 38 4-41 2-39 (348)
148 PF13439 Glyco_transf_4: Glyco 90.6 2.2 4.8E-05 36.6 9.4 102 11-146 10-112 (177)
149 PRK14099 glycogen synthase; Pr 90.0 6.3 0.00014 40.9 13.6 83 345-436 354-449 (485)
150 cd03788 GT1_TPS Trehalose-6-Ph 89.2 2.6 5.6E-05 43.4 9.9 104 346-472 345-459 (460)
151 PRK02797 4-alpha-L-fucosyltran 88.5 15 0.00033 35.1 13.5 81 342-432 206-292 (322)
152 TIGR03713 acc_sec_asp1 accesso 87.8 1.4 3.1E-05 45.9 6.9 91 343-452 410-507 (519)
153 cd03793 GT1_Glycogen_synthase_ 87.1 3 6.4E-05 43.6 8.6 81 351-435 467-553 (590)
154 PRK06718 precorrin-2 dehydroge 87.0 13 0.00027 33.6 11.8 146 277-454 11-165 (202)
155 PF08660 Alg14: Oligosaccharid 85.6 5.7 0.00012 34.7 8.5 120 7-144 2-130 (170)
156 TIGR02919 accessory Sec system 85.1 27 0.00057 35.7 14.3 183 209-450 237-425 (438)
157 PF04413 Glycos_transf_N: 3-De 84.2 3.4 7.3E-05 36.7 6.6 97 10-143 28-126 (186)
158 COG1618 Predicted nucleotide k 81.5 11 0.00025 32.3 8.2 36 1-38 4-39 (179)
159 COG0003 ArsA Predicted ATPase 81.5 12 0.00025 36.4 9.6 41 3-45 2-43 (322)
160 PF04464 Glyphos_transf: CDP-G 80.5 2.3 5E-05 42.3 4.6 117 342-470 252-369 (369)
161 PLN03063 alpha,alpha-trehalose 79.7 7.1 0.00015 43.2 8.3 100 353-475 370-478 (797)
162 COG0438 RfaG Glycosyltransfera 79.5 56 0.0012 30.8 17.0 82 341-436 256-344 (381)
163 COG4370 Uncharacterized protei 78.9 4.3 9.2E-05 38.4 5.3 104 348-469 301-408 (412)
164 PF05159 Capsule_synth: Capsul 77.9 13 0.00028 35.2 8.6 42 344-388 185-226 (269)
165 COG0496 SurE Predicted acid ph 77.5 15 0.00032 34.2 8.4 34 4-41 2-35 (252)
166 PRK02261 methylaspartate mutas 75.5 6.7 0.00015 32.9 5.3 41 1-43 1-42 (137)
167 cd07038 TPP_PYR_PDC_IPDC_like 75.1 40 0.00087 29.1 10.3 28 360-387 59-92 (162)
168 PRK13932 stationary phase surv 75.1 27 0.00058 32.7 9.5 37 1-41 4-40 (257)
169 cd07039 TPP_PYR_POX Pyrimidine 74.9 47 0.001 28.7 10.7 27 361-387 64-96 (164)
170 PRK08057 cobalt-precorrin-6x r 74.5 17 0.00036 34.0 8.1 34 1-41 1-34 (248)
171 PLN02470 acetolactate synthase 73.7 27 0.00059 37.2 10.6 91 283-387 2-109 (585)
172 PRK07206 hypothetical protein; 73.2 11 0.00023 38.3 7.1 34 1-41 1-34 (416)
173 PF00731 AIRC: AIR carboxylase 73.1 50 0.0011 28.1 9.9 137 279-453 2-148 (150)
174 PRK14501 putative bifunctional 72.9 16 0.00035 40.1 8.8 111 346-475 346-463 (726)
175 PF07429 Glyco_transf_56: 4-al 72.1 1E+02 0.0022 30.2 13.3 82 342-433 245-332 (360)
176 TIGR02398 gluc_glyc_Psyn gluco 72.0 1.3E+02 0.0028 31.3 14.6 108 344-474 364-482 (487)
177 PF01075 Glyco_transf_9: Glyco 71.8 15 0.00033 33.9 7.4 99 276-386 104-208 (247)
178 cd02067 B12-binding B12 bindin 71.4 7 0.00015 31.7 4.4 35 4-40 1-35 (119)
179 TIGR01470 cysG_Nterm siroheme 71.1 59 0.0013 29.3 10.7 149 277-454 10-165 (205)
180 cd07037 TPP_PYR_MenD Pyrimidin 68.1 57 0.0012 28.2 9.5 27 361-387 61-93 (162)
181 cd01974 Nitrogenase_MoFe_beta 67.8 22 0.00049 36.3 8.1 35 100-142 368-402 (435)
182 cd00550 ArsA_ATPase Oxyanion-t 67.5 35 0.00075 32.0 8.8 36 5-42 3-38 (254)
183 TIGR00715 precor6x_red precorr 67.1 43 0.00094 31.4 9.2 23 19-43 12-34 (256)
184 PF12146 Hydrolase_4: Putative 65.6 13 0.00029 27.7 4.5 34 3-38 16-49 (79)
185 PRK02155 ppnK NAD(+)/NADH kina 65.5 36 0.00078 32.6 8.5 55 357-435 62-120 (291)
186 COG0052 RpsB Ribosomal protein 64.5 20 0.00044 33.0 6.1 35 113-148 156-192 (252)
187 COG3660 Predicted nucleoside-d 64.4 1.3E+02 0.0028 28.3 19.6 77 298-386 189-271 (329)
188 cd07035 TPP_PYR_POX_like Pyrim 63.9 89 0.0019 26.4 10.6 28 361-388 60-93 (155)
189 KOG1250 Threonine/serine dehyd 63.7 1.6E+02 0.0036 29.3 13.5 60 364-436 248-318 (457)
190 KOG2825 Putative arsenite-tran 63.3 29 0.00062 32.2 6.8 52 4-57 20-72 (323)
191 PRK04885 ppnK inorganic polyph 63.1 14 0.00031 34.8 5.2 54 358-435 35-94 (265)
192 PRK06321 replicative DNA helic 62.0 6.6 0.00014 40.5 2.9 37 5-43 229-266 (472)
193 PF00448 SRP54: SRP54-type pro 60.8 39 0.00084 30.2 7.4 40 3-44 2-41 (196)
194 cd01965 Nitrogenase_MoFe_beta_ 59.9 41 0.00089 34.2 8.3 34 100-141 362-395 (428)
195 PF02310 B12-binding: B12 bind 59.8 20 0.00044 28.8 5.0 35 4-40 2-36 (121)
196 COG0541 Ffh Signal recognition 59.1 39 0.00084 34.0 7.5 40 4-45 102-141 (451)
197 PRK06988 putative formyltransf 58.9 51 0.0011 32.0 8.3 36 1-43 1-36 (312)
198 PRK05986 cob(I)alamin adenolsy 58.7 1.3E+02 0.0029 26.7 10.3 34 4-39 24-57 (191)
199 PF06925 MGDG_synth: Monogalac 58.6 27 0.00058 30.3 5.9 46 94-143 74-124 (169)
200 PRK13935 stationary phase surv 58.0 74 0.0016 29.7 8.8 114 3-142 1-127 (253)
201 cd00561 CobA_CobO_BtuR ATP:cor 57.3 1.3E+02 0.0027 26.0 10.8 33 4-38 4-36 (159)
202 PF02374 ArsA_ATPase: Anion-tr 56.8 38 0.00083 32.7 7.1 39 4-44 3-41 (305)
203 PF06564 YhjQ: YhjQ protein; 56.7 80 0.0017 29.3 8.8 37 2-40 1-38 (243)
204 COG0552 FtsY Signal recognitio 56.4 43 0.00092 32.5 7.0 40 4-45 141-180 (340)
205 PRK08155 acetolactate synthase 56.0 89 0.0019 33.1 10.4 91 283-387 3-109 (564)
206 PRK14077 pnk inorganic polypho 55.6 21 0.00045 34.1 5.0 56 356-435 62-121 (287)
207 COG1703 ArgK Putative periplas 55.3 1.1E+02 0.0023 29.5 9.3 40 3-44 52-91 (323)
208 PF02606 LpxK: Tetraacyldisacc 54.7 79 0.0017 30.9 8.9 38 5-44 40-77 (326)
209 TIGR00725 conserved hypothetic 54.4 65 0.0014 27.7 7.4 39 350-388 82-123 (159)
210 PRK00784 cobyric acid synthase 54.3 1.6E+02 0.0034 30.7 11.6 36 1-38 1-37 (488)
211 PRK05973 replicative DNA helic 53.9 56 0.0012 30.2 7.3 37 5-43 67-103 (237)
212 COG0299 PurN Folate-dependent 53.6 62 0.0014 28.8 7.1 84 279-388 53-136 (200)
213 PRK05595 replicative DNA helic 53.6 6.9 0.00015 40.1 1.5 37 5-43 204-241 (444)
214 COG2894 MinD Septum formation 53.5 44 0.00094 30.5 6.1 36 4-41 3-40 (272)
215 PHA02542 41 41 helicase; Provi 53.3 17 0.00037 37.5 4.2 38 5-44 193-230 (473)
216 PF02441 Flavoprotein: Flavopr 53.1 22 0.00048 29.3 4.2 38 3-43 1-38 (129)
217 COG0801 FolK 7,8-dihydro-6-hyd 52.6 42 0.0009 28.9 5.7 35 279-313 3-37 (160)
218 TIGR03600 phage_DnaB phage rep 52.2 8.4 0.00018 39.2 1.8 37 5-43 197-234 (421)
219 PRK01911 ppnK inorganic polyph 52.0 26 0.00057 33.6 5.0 58 354-435 60-121 (292)
220 PRK08760 replicative DNA helic 51.1 29 0.00063 35.9 5.5 37 5-43 232-269 (476)
221 PRK05748 replicative DNA helic 51.0 11 0.00023 38.8 2.4 38 5-44 206-244 (448)
222 PRK01231 ppnK inorganic polyph 50.4 92 0.002 29.9 8.5 55 357-435 61-119 (295)
223 TIGR02015 BchY chlorophyllide 50.3 45 0.00097 33.9 6.7 32 3-41 286-317 (422)
224 PRK05647 purN phosphoribosylgl 50.3 1E+02 0.0022 27.6 8.3 37 2-41 1-37 (200)
225 cd00984 DnaB_C DnaB helicase C 49.5 78 0.0017 29.0 7.8 37 5-43 16-53 (242)
226 PF07355 GRDB: Glycine/sarcosi 49.3 28 0.00061 33.9 4.7 47 90-141 61-117 (349)
227 PRK02649 ppnK inorganic polyph 48.9 28 0.00062 33.6 4.7 54 357-435 67-125 (305)
228 TIGR00173 menD 2-succinyl-5-en 48.8 1.3E+02 0.0029 30.6 9.9 71 361-434 64-154 (432)
229 PRK12342 hypothetical protein; 48.1 27 0.00058 32.7 4.3 40 100-144 100-145 (254)
230 PRK05632 phosphate acetyltrans 48.0 1.2E+02 0.0026 33.1 9.9 36 1-38 1-37 (684)
231 cd02071 MM_CoA_mut_B12_BD meth 47.9 36 0.00077 27.7 4.6 38 4-43 1-38 (122)
232 PRK04539 ppnK inorganic polyph 47.7 33 0.00072 33.0 5.0 58 354-435 64-125 (296)
233 PF06506 PrpR_N: Propionate ca 47.6 31 0.00066 30.2 4.4 67 358-433 34-123 (176)
234 PRK03359 putative electron tra 47.4 31 0.00067 32.4 4.6 40 100-144 103-148 (256)
235 PRK08322 acetolactate synthase 47.0 1.1E+02 0.0023 32.4 9.2 67 360-434 63-148 (547)
236 cd01425 RPS2 Ribosomal protein 46.9 25 0.00054 31.4 3.8 36 112-148 126-163 (193)
237 PRK05636 replicative DNA helic 46.8 7 0.00015 40.7 0.3 37 5-43 268-305 (505)
238 PRK11889 flhF flagellar biosyn 46.6 78 0.0017 31.9 7.3 39 3-43 242-280 (436)
239 TIGR01286 nifK nitrogenase mol 46.5 99 0.0021 32.4 8.6 34 100-141 428-461 (515)
240 PRK12446 undecaprenyldiphospho 46.5 39 0.00084 33.4 5.5 96 279-386 4-120 (352)
241 PRK07710 acetolactate synthase 46.3 99 0.0021 32.9 8.9 27 361-387 79-111 (571)
242 cd01977 Nitrogenase_VFe_alpha 46.3 84 0.0018 31.8 8.0 31 103-141 352-382 (415)
243 PRK08506 replicative DNA helic 46.3 62 0.0014 33.4 7.1 38 5-44 195-232 (472)
244 PRK03378 ppnK inorganic polyph 46.1 32 0.00069 33.0 4.6 57 355-435 60-120 (292)
245 COG2099 CobK Precorrin-6x redu 45.4 1.7E+02 0.0037 27.3 8.8 39 98-141 55-99 (257)
246 PRK02231 ppnK inorganic polyph 45.0 32 0.0007 32.6 4.4 59 351-433 35-97 (272)
247 PRK06276 acetolactate synthase 44.9 1.3E+02 0.0029 32.0 9.6 67 360-434 63-148 (586)
248 TIGR03446 mycothiol_Mca mycoth 44.8 77 0.0017 30.2 6.9 19 97-119 109-127 (283)
249 cd03466 Nitrogenase_NifN_2 Nit 44.8 1.4E+02 0.003 30.5 9.3 34 100-141 363-396 (429)
250 KOG0853 Glycosyltransferase [C 44.6 31 0.00068 35.4 4.4 55 372-436 381-435 (495)
251 TIGR02655 circ_KaiC circadian 44.5 1.2E+02 0.0025 31.6 8.8 49 4-57 265-313 (484)
252 PRK00771 signal recognition pa 44.5 84 0.0018 32.1 7.5 39 4-44 97-135 (437)
253 PRK03372 ppnK inorganic polyph 44.4 36 0.00079 32.8 4.7 56 356-435 70-129 (306)
254 PRK08006 replicative DNA helic 44.3 20 0.00043 37.0 3.1 37 5-43 227-264 (471)
255 TIGR00682 lpxK tetraacyldisacc 44.2 1.6E+02 0.0034 28.6 9.0 37 5-43 33-69 (311)
256 PRK06395 phosphoribosylamine-- 44.0 1.1E+02 0.0025 31.2 8.5 31 1-38 1-31 (435)
257 TIGR00665 DnaB replicative DNA 43.3 17 0.00036 37.2 2.4 38 5-44 198-236 (434)
258 PRK06904 replicative DNA helic 43.1 17 0.00038 37.4 2.5 37 5-43 224-261 (472)
259 PRK12311 rpsB 30S ribosomal pr 42.5 48 0.001 32.2 5.2 36 112-148 151-188 (326)
260 cd01968 Nitrogenase_NifE_I Nit 42.5 1.2E+02 0.0025 30.7 8.3 34 100-141 347-380 (410)
261 COG2185 Sbm Methylmalonyl-CoA 42.3 36 0.00079 28.6 3.8 36 2-39 12-47 (143)
262 cd02070 corrinoid_protein_B12- 42.3 51 0.0011 29.6 5.1 37 3-41 83-119 (201)
263 PRK09165 replicative DNA helic 42.3 76 0.0017 33.1 7.0 38 5-44 220-272 (497)
264 PRK10867 signal recognition pa 42.2 1.1E+02 0.0024 31.2 8.0 39 4-44 102-141 (433)
265 cd01124 KaiC KaiC is a circadi 41.8 43 0.00094 29.2 4.6 37 5-43 2-38 (187)
266 PRK07525 sulfoacetaldehyde ace 41.7 1.9E+02 0.004 30.9 10.1 28 360-387 68-101 (588)
267 PF05693 Glycogen_syn: Glycoge 41.6 51 0.0011 34.8 5.5 94 350-451 461-566 (633)
268 PRK11199 tyrA bifunctional cho 41.5 1.9E+02 0.004 28.9 9.4 31 3-40 99-130 (374)
269 cd00532 MGS-like MGS-like doma 41.4 1.4E+02 0.0031 23.7 7.1 84 15-140 10-104 (112)
270 TIGR00730 conserved hypothetic 41.4 95 0.0021 27.3 6.5 36 352-387 89-133 (178)
271 PRK01185 ppnK inorganic polyph 40.5 45 0.00099 31.6 4.6 54 358-435 52-106 (271)
272 PF04127 DFP: DNA / pantothena 40.3 18 0.00039 32.1 1.8 37 3-41 4-52 (185)
273 PF02826 2-Hacid_dh_C: D-isome 40.2 1.4E+02 0.0031 26.0 7.6 106 277-430 37-143 (178)
274 cd01121 Sms Sms (bacterial rad 40.0 2.2E+02 0.0047 28.4 9.6 36 5-42 85-120 (372)
275 TIGR00460 fmt methionyl-tRNA f 40.0 2.1E+02 0.0045 27.8 9.2 33 4-43 2-34 (313)
276 TIGR02370 pyl_corrinoid methyl 39.9 57 0.0012 29.2 5.0 39 3-43 85-123 (197)
277 TIGR02853 spore_dpaA dipicolin 39.8 3.4E+02 0.0074 25.9 16.7 73 278-376 153-225 (287)
278 TIGR01918 various_sel_PB selen 39.7 45 0.00097 33.4 4.5 45 93-142 60-114 (431)
279 PF02951 GSH-S_N: Prokaryotic 39.7 51 0.0011 26.8 4.2 36 4-41 2-40 (119)
280 COG1663 LpxK Tetraacyldisaccha 39.6 1.2E+02 0.0025 29.6 7.2 34 6-41 53-86 (336)
281 TIGR01917 gly_red_sel_B glycin 39.6 45 0.00097 33.4 4.5 46 92-142 59-114 (431)
282 PLN02929 NADH kinase 39.0 36 0.00078 32.7 3.7 67 357-435 63-138 (301)
283 PRK06456 acetolactate synthase 38.6 1.4E+02 0.003 31.8 8.5 27 361-387 69-101 (572)
284 PF00551 Formyl_trans_N: Formy 38.6 1.3E+02 0.0029 26.3 7.1 107 3-144 1-110 (181)
285 PRK04940 hypothetical protein; 38.6 63 0.0014 28.4 4.9 31 113-144 60-91 (180)
286 PRK04965 NADH:flavorubredoxin 38.5 29 0.00063 34.6 3.2 37 1-42 1-37 (377)
287 PF03808 Glyco_tran_WecB: Glyc 38.5 2.6E+02 0.0057 24.2 10.6 86 214-316 51-136 (172)
288 PRK05858 hypothetical protein; 38.5 1.8E+02 0.004 30.6 9.4 26 362-387 69-100 (542)
289 PRK10637 cysG siroheme synthas 38.5 4.1E+02 0.0088 27.3 11.6 146 277-454 13-168 (457)
290 PRK06270 homoserine dehydrogen 38.4 3.3E+02 0.0072 26.7 10.5 59 351-410 80-150 (341)
291 PRK03501 ppnK inorganic polyph 38.4 56 0.0012 30.8 4.9 55 358-435 39-98 (264)
292 PLN02935 Bifunctional NADH kin 38.3 52 0.0011 33.9 4.9 55 357-435 261-319 (508)
293 PF01975 SurE: Survival protei 37.6 59 0.0013 29.1 4.7 37 4-43 2-38 (196)
294 PRK14075 pnk inorganic polypho 37.6 58 0.0013 30.6 4.8 54 358-435 41-95 (256)
295 TIGR01425 SRP54_euk signal rec 37.2 2E+02 0.0043 29.3 8.8 39 4-44 102-140 (429)
296 PRK11269 glyoxylate carboligas 37.2 2.2E+02 0.0047 30.4 9.8 27 361-387 69-101 (591)
297 KOG0832 Mitochondrial/chloropl 37.1 27 0.00058 31.7 2.3 114 12-147 90-208 (251)
298 PRK01077 cobyrinic acid a,c-di 37.0 2.3E+02 0.005 29.1 9.6 36 3-40 4-40 (451)
299 cd01424 MGS_CPS_II Methylglyox 36.7 2E+02 0.0043 22.6 7.3 84 14-140 10-100 (110)
300 TIGR01761 thiaz-red thiazoliny 36.3 3.1E+02 0.0066 27.0 9.8 98 297-411 16-122 (343)
301 PRK07773 replicative DNA helic 36.3 69 0.0015 36.1 6.0 37 5-43 220-257 (886)
302 COG3195 Uncharacterized protei 36.1 2E+02 0.0043 24.8 7.1 90 357-452 71-164 (176)
303 PRK13933 stationary phase surv 36.0 3.7E+02 0.008 25.2 11.6 35 4-42 2-36 (253)
304 PF03641 Lysine_decarbox: Poss 35.7 1.4E+02 0.0029 24.8 6.3 36 353-388 47-92 (133)
305 PRK00048 dihydrodipicolinate r 35.7 3.2E+02 0.0069 25.5 9.6 59 350-412 52-116 (257)
306 smart00851 MGS MGS-like domain 35.6 1.7E+02 0.0037 22.1 6.5 20 19-41 2-21 (90)
307 COG2086 FixA Electron transfer 35.5 2.6E+02 0.0056 26.3 8.7 39 100-143 102-146 (260)
308 TIGR00345 arsA arsenite-activa 35.3 1.4E+02 0.0031 28.4 7.2 24 20-45 3-26 (284)
309 TIGR00708 cobA cob(I)alamin ad 35.3 3.1E+02 0.0066 24.0 10.0 33 4-38 7-39 (173)
310 PRK05920 aromatic acid decarbo 35.3 47 0.001 29.9 3.7 40 1-43 2-41 (204)
311 PRK08051 fre FMN reductase; Va 35.2 45 0.00098 30.6 3.7 64 3-69 103-166 (232)
312 PF03808 Glyco_tran_WecB: Glyc 35.2 1.6E+02 0.0035 25.5 7.1 98 19-148 37-138 (172)
313 TIGR00118 acolac_lg acetolacta 34.5 2.1E+02 0.0045 30.3 9.0 28 360-387 64-97 (558)
314 cd06211 phenol_2-monooxygenase 34.4 90 0.0019 28.6 5.6 63 3-68 110-172 (238)
315 PRK08840 replicative DNA helic 34.2 34 0.00074 35.2 2.9 37 5-43 220-257 (464)
316 PRK08229 2-dehydropantoate 2-r 34.0 41 0.00089 32.9 3.4 33 1-40 1-33 (341)
317 COG4088 Predicted nucleotide k 34.0 52 0.0011 29.7 3.6 35 3-39 2-36 (261)
318 PF02776 TPP_enzyme_N: Thiamin 34.0 1.1E+02 0.0024 26.5 5.8 30 359-388 63-98 (172)
319 PF08323 Glyco_transf_5: Starc 33.9 52 0.0011 30.6 3.9 25 16-42 19-43 (245)
320 PRK12475 thiamine/molybdopteri 33.6 74 0.0016 31.2 5.1 30 3-39 25-55 (338)
321 PF05728 UPF0227: Uncharacteri 33.4 72 0.0016 28.3 4.5 44 99-145 47-91 (187)
322 PF01210 NAD_Gly3P_dh_N: NAD-d 33.4 41 0.00088 28.8 2.9 31 4-41 1-31 (157)
323 cd06194 FNR_N-term_Iron_sulfur 33.2 95 0.0021 28.0 5.5 64 3-69 98-161 (222)
324 PF05225 HTH_psq: helix-turn-h 33.1 82 0.0018 20.5 3.6 25 420-447 1-26 (45)
325 COG4394 Uncharacterized protei 32.9 4.5E+02 0.0096 25.2 10.6 40 344-386 240-282 (370)
326 PRK05713 hypothetical protein; 32.9 69 0.0015 31.0 4.7 62 3-67 193-254 (312)
327 PRK04020 rps2P 30S ribosomal p 32.9 36 0.00078 30.6 2.5 35 113-148 114-150 (204)
328 PRK14099 glycogen synthase; Pr 32.9 63 0.0014 33.6 4.7 38 3-42 4-47 (485)
329 CHL00076 chlB photochlorophyll 32.5 61 0.0013 33.9 4.5 35 100-142 365-399 (513)
330 PRK06882 acetolactate synthase 32.4 2.4E+02 0.0052 30.0 9.1 28 360-387 67-100 (574)
331 TIGR01012 Sa_S2_E_A ribosomal 32.4 39 0.00085 30.2 2.6 35 113-148 108-144 (196)
332 PRK08978 acetolactate synthase 32.2 1.9E+02 0.0041 30.5 8.3 27 361-387 64-96 (548)
333 cd01840 SGNH_hydrolase_yrhL_li 32.1 81 0.0018 26.5 4.6 38 277-315 51-88 (150)
334 PRK08979 acetolactate synthase 32.1 3E+02 0.0066 29.2 9.8 28 360-387 67-100 (572)
335 PRK08266 hypothetical protein; 32.1 2.9E+02 0.0063 29.0 9.7 27 361-387 69-101 (542)
336 PRK02910 light-independent pro 31.9 64 0.0014 33.8 4.6 35 100-142 353-387 (519)
337 PRK03708 ppnK inorganic polyph 31.9 67 0.0014 30.5 4.3 29 358-388 57-88 (277)
338 cd01141 TroA_d Periplasmic bin 31.8 63 0.0014 28.3 4.0 29 113-142 69-99 (186)
339 PRK08199 thiamine pyrophosphat 31.8 3.2E+02 0.0069 28.9 9.9 67 361-435 72-157 (557)
340 PRK14098 glycogen synthase; Pr 31.7 66 0.0014 33.5 4.6 38 3-42 6-49 (489)
341 cd06533 Glyco_transf_WecG_TagA 31.5 3.4E+02 0.0075 23.5 11.3 86 214-316 49-134 (171)
342 COG1484 DnaC DNA replication p 31.5 71 0.0015 29.9 4.4 36 4-41 107-142 (254)
343 cd06210 MMO_FAD_NAD_binding Me 31.4 84 0.0018 28.7 4.9 64 3-69 109-172 (236)
344 cd01976 Nitrogenase_MoFe_alpha 31.3 57 0.0012 33.2 4.0 35 100-142 360-394 (421)
345 PRK06048 acetolactate synthase 30.9 2.8E+02 0.006 29.4 9.2 27 361-387 71-103 (561)
346 KOG0780 Signal recognition par 30.9 2.1E+02 0.0045 28.6 7.4 40 4-45 103-142 (483)
347 PRK10422 lipopolysaccharide co 30.9 1.6E+02 0.0035 28.8 7.1 28 113-143 262-289 (352)
348 COG1422 Predicted membrane pro 30.9 1.6E+02 0.0034 26.3 6.0 81 372-471 24-106 (201)
349 PRK07313 phosphopantothenoylcy 30.7 62 0.0013 28.6 3.6 40 3-45 2-41 (182)
350 PRK07574 formate dehydrogenase 30.6 4.1E+02 0.009 26.6 9.8 72 277-376 193-264 (385)
351 PRK11823 DNA repair protein Ra 30.3 3.3E+02 0.0071 27.9 9.3 37 5-43 83-119 (446)
352 PRK07586 hypothetical protein; 30.2 2.6E+02 0.0055 29.2 8.8 27 361-387 65-97 (514)
353 PRK07524 hypothetical protein; 29.9 3.3E+02 0.0071 28.6 9.6 26 361-386 65-96 (535)
354 cd02069 methionine_synthase_B1 29.9 1E+02 0.0022 28.0 5.0 39 3-43 89-127 (213)
355 COG1090 Predicted nucleoside-d 29.9 1.7E+02 0.0038 27.7 6.4 23 20-44 12-34 (297)
356 PF10087 DUF2325: Uncharacteri 29.8 1.3E+02 0.0027 23.3 4.9 34 113-147 48-87 (97)
357 TIGR01278 DPOR_BchB light-inde 29.6 72 0.0016 33.4 4.5 27 112-142 363-389 (511)
358 TIGR00347 bioD dethiobiotin sy 29.6 3.5E+02 0.0076 22.9 8.7 29 8-38 4-32 (166)
359 cd06212 monooxygenase_like The 29.5 96 0.0021 28.3 4.9 63 3-68 104-166 (232)
360 COG2987 HutU Urocanate hydrata 29.4 1.4E+02 0.003 30.2 5.9 40 346-385 467-508 (561)
361 PRK06457 pyruvate dehydrogenas 29.4 2.9E+02 0.0062 29.2 9.0 27 361-387 65-97 (549)
362 PRK08527 acetolactate synthase 29.4 3.2E+02 0.0068 29.0 9.4 28 360-387 66-99 (563)
363 PF00289 CPSase_L_chain: Carba 29.3 1.1E+02 0.0024 24.4 4.6 68 296-379 15-91 (110)
364 PRK06466 acetolactate synthase 29.0 3.2E+02 0.0069 29.0 9.4 27 361-387 68-100 (574)
365 TIGR03590 PseG pseudaminic aci 29.0 4.5E+02 0.0098 24.8 9.6 30 113-145 241-270 (279)
366 PRK13010 purU formyltetrahydro 29.0 5.2E+02 0.011 24.7 10.0 102 297-432 160-263 (289)
367 PF07302 AroM: AroM protein; 28.9 4.5E+02 0.0098 24.0 9.4 29 112-141 177-208 (221)
368 PRK07004 replicative DNA helic 28.9 1.7E+02 0.0038 30.1 7.1 38 5-44 216-254 (460)
369 PRK13604 luxD acyl transferase 28.7 1E+02 0.0022 29.8 4.9 33 4-38 38-70 (307)
370 PF07801 DUF1647: Protein of u 28.6 1.8E+02 0.0038 24.6 5.7 63 3-72 60-122 (142)
371 cd01981 Pchlide_reductase_B Pc 28.5 85 0.0018 32.0 4.8 27 112-142 369-395 (430)
372 cd06189 flavin_oxioreductase N 28.5 1.3E+02 0.0028 27.2 5.6 63 3-68 99-161 (224)
373 PRK04328 hypothetical protein; 28.4 4.3E+02 0.0093 24.5 9.1 37 5-43 26-62 (249)
374 TIGR03457 sulphoacet_xsc sulfo 28.4 3.2E+02 0.007 29.0 9.3 28 360-387 64-97 (579)
375 PRK14076 pnk inorganic polypho 28.4 74 0.0016 33.8 4.4 54 358-435 348-405 (569)
376 PRK07064 hypothetical protein; 27.8 3.9E+02 0.0085 28.1 9.8 27 361-387 67-99 (544)
377 PRK13011 formyltetrahydrofolat 27.7 3.3E+02 0.0072 26.0 8.2 100 298-431 157-258 (286)
378 TIGR00959 ffh signal recogniti 27.5 2.8E+02 0.006 28.3 8.1 40 4-45 101-141 (428)
379 PRK07449 2-succinyl-5-enolpyru 27.5 2.1E+02 0.0045 30.4 7.6 26 362-387 74-105 (568)
380 PRK06725 acetolactate synthase 27.4 3.1E+02 0.0066 29.2 8.8 27 361-387 78-110 (570)
381 PF13499 EF-hand_7: EF-hand do 27.2 76 0.0017 22.1 3.0 53 415-471 13-65 (66)
382 PRK10117 trehalose-6-phosphate 27.2 3E+02 0.0065 28.5 8.2 109 349-478 339-457 (474)
383 PRK07313 phosphopantothenoylcy 27.2 4.3E+02 0.0094 23.2 12.2 56 377-433 108-179 (182)
384 PRK07282 acetolactate synthase 27.1 2.8E+02 0.0061 29.4 8.5 79 295-387 13-106 (566)
385 PF06506 PrpR_N: Propionate ca 27.0 73 0.0016 27.8 3.4 44 98-146 111-154 (176)
386 PRK05299 rpsB 30S ribosomal pr 26.7 51 0.0011 30.9 2.5 36 112-148 156-193 (258)
387 KOG3339 Predicted glycosyltran 26.7 1.2E+02 0.0025 26.8 4.3 25 6-30 41-65 (211)
388 KOG2941 Beta-1,4-mannosyltrans 26.6 6.4E+02 0.014 25.0 24.2 126 3-148 13-142 (444)
389 TIGR03880 KaiC_arch_3 KaiC dom 26.5 3E+02 0.0064 24.9 7.6 37 5-43 19-55 (224)
390 TIGR02852 spore_dpaB dipicolin 26.4 78 0.0017 28.1 3.5 38 3-42 1-38 (187)
391 PF09314 DUF1972: Domain of un 26.3 4.6E+02 0.0099 23.2 10.5 57 3-71 2-63 (185)
392 PRK07979 acetolactate synthase 26.3 3.9E+02 0.0085 28.4 9.4 28 360-387 67-100 (574)
393 PLN03064 alpha,alpha-trehalose 26.1 3.1E+02 0.0067 31.1 8.6 103 350-475 448-562 (934)
394 COG2099 CobK Precorrin-6x redu 25.9 84 0.0018 29.2 3.6 40 98-142 185-229 (257)
395 cd03146 GAT1_Peptidase_E Type 25.9 4.8E+02 0.01 23.5 8.7 47 264-312 17-66 (212)
396 PRK00090 bioD dithiobiotin syn 25.8 3.6E+02 0.0078 24.2 8.0 32 5-38 2-34 (222)
397 PRK06222 ferredoxin-NADP(+) re 25.8 1.2E+02 0.0025 28.9 4.9 35 3-41 99-133 (281)
398 PRK09219 xanthine phosphoribos 25.8 98 0.0021 27.5 4.0 30 112-142 49-80 (189)
399 TIGR03877 thermo_KaiC_1 KaiC d 25.8 3.5E+02 0.0076 24.8 8.0 38 4-43 23-60 (237)
400 COG2861 Uncharacterized protei 25.7 2.7E+02 0.0058 25.8 6.7 42 96-141 135-179 (250)
401 TIGR01011 rpsB_bact ribosomal 25.7 56 0.0012 30.0 2.5 36 112-148 154-191 (225)
402 cd06187 O2ase_reductase_like T 25.6 1.7E+02 0.0037 26.3 5.8 64 3-69 99-162 (224)
403 COG0503 Apt Adenine/guanine ph 25.6 1.3E+02 0.0027 26.5 4.7 29 112-141 52-82 (179)
404 PRK11914 diacylglycerol kinase 25.5 4.2E+02 0.0092 25.3 8.8 28 359-388 65-96 (306)
405 PRK11519 tyrosine kinase; Prov 25.5 5.4E+02 0.012 28.3 10.5 36 4-41 527-564 (719)
406 PTZ00254 40S ribosomal protein 25.4 63 0.0014 30.0 2.8 34 113-147 118-153 (249)
407 PF08766 DEK_C: DEK C terminal 25.4 2.2E+02 0.0048 19.2 5.6 51 420-472 1-52 (54)
408 PRK01175 phosphoribosylformylg 25.3 5.7E+02 0.012 24.0 9.7 36 1-41 2-37 (261)
409 cd02065 B12-binding_like B12 b 25.3 1.4E+02 0.0029 23.9 4.6 35 4-40 1-35 (125)
410 PRK12448 dihydroxy-acid dehydr 25.2 5.4E+02 0.012 27.5 9.7 44 103-147 101-148 (615)
411 PRK08617 acetolactate synthase 25.2 3.6E+02 0.0078 28.5 8.9 27 361-387 68-100 (552)
412 PRK06487 glycerate dehydrogena 25.1 4E+02 0.0086 25.8 8.5 60 277-371 149-208 (317)
413 TIGR02836 spore_IV_A stage IV 25.1 3E+02 0.0066 28.1 7.5 76 352-432 137-233 (492)
414 TIGR00514 accC acetyl-CoA carb 25.1 5.4E+02 0.012 26.2 10.0 33 1-40 1-33 (449)
415 COG1018 Hmp Flavodoxin reducta 25.1 1.5E+02 0.0032 28.1 5.3 45 4-52 112-156 (266)
416 PF08844 DUF1815: Domain of un 25.0 2.3E+02 0.005 21.8 5.1 26 16-43 16-41 (105)
417 TIGR00379 cobB cobyrinic acid 24.5 4.6E+02 0.0099 26.9 9.2 33 5-39 2-35 (449)
418 cd06191 FNR_iron_sulfur_bindin 24.5 1.2E+02 0.0025 27.7 4.5 65 3-70 103-167 (231)
419 PRK08305 spoVFB dipicolinate s 24.4 95 0.0021 27.8 3.7 38 3-43 6-44 (196)
420 TIGR00110 ilvD dihydroxy-acid 24.4 6E+02 0.013 26.7 9.8 42 105-147 81-126 (535)
421 PRK09107 acetolactate synthase 24.4 6.2E+02 0.013 27.0 10.5 34 6-42 77-110 (595)
422 PRK07609 CDP-6-deoxy-delta-3,4 24.3 1.4E+02 0.0031 29.1 5.4 64 3-69 205-268 (339)
423 cd02034 CooC The accessory pro 24.2 1.5E+02 0.0033 23.8 4.6 37 4-42 1-37 (116)
424 PF00282 Pyridoxal_deC: Pyrido 24.2 1.9E+02 0.004 28.9 6.2 71 361-434 104-191 (373)
425 PRK06732 phosphopantothenate-- 24.2 81 0.0018 29.0 3.3 34 4-39 2-47 (229)
426 cd01715 ETF_alpha The electron 23.8 1.5E+02 0.0032 25.6 4.8 40 99-143 73-115 (168)
427 PRK10353 3-methyl-adenine DNA 23.7 3.4E+02 0.0074 24.1 6.9 52 385-436 22-84 (187)
428 PF10093 DUF2331: Uncharacteri 23.6 1.3E+02 0.0028 29.9 4.7 91 290-388 192-290 (374)
429 PRK06027 purU formyltetrahydro 23.6 5.3E+02 0.011 24.6 8.8 107 2-144 89-196 (286)
430 PRK06932 glycerate dehydrogena 23.6 4.3E+02 0.0093 25.6 8.4 61 277-371 148-208 (314)
431 COG2256 MGS1 ATPase related to 23.5 6.8E+02 0.015 25.3 9.5 59 243-313 49-110 (436)
432 PRK13289 bifunctional nitric o 23.5 1.4E+02 0.003 30.0 5.2 64 3-69 262-325 (399)
433 TIGR01285 nifN nitrogenase mol 23.4 99 0.0021 31.6 4.1 34 100-141 364-397 (432)
434 PRK09620 hypothetical protein; 23.4 92 0.002 28.7 3.5 36 3-40 4-51 (229)
435 TIGR01162 purE phosphoribosyla 23.4 4.1E+02 0.0089 22.8 7.1 108 290-446 37-146 (156)
436 PF02585 PIG-L: GlcNAc-PI de-N 23.2 3.9E+02 0.0084 21.5 7.0 22 96-121 87-108 (128)
437 PRK13057 putative lipid kinase 23.1 1.7E+02 0.0036 27.8 5.4 30 357-388 49-82 (287)
438 TIGR03609 S_layer_CsaB polysac 23.1 5.4E+02 0.012 24.3 9.1 33 353-388 245-277 (298)
439 PRK04761 ppnK inorganic polyph 23.0 72 0.0016 29.7 2.7 28 359-388 26-57 (246)
440 PRK14092 2-amino-4-hydroxy-6-h 23.0 1.7E+02 0.0037 25.3 4.9 31 276-306 6-36 (163)
441 PF00933 Glyco_hydro_3: Glycos 22.8 81 0.0018 30.3 3.2 114 295-433 183-298 (299)
442 PF12695 Abhydrolase_5: Alpha/ 22.6 1.8E+02 0.004 23.5 5.1 32 5-38 1-32 (145)
443 TIGR00715 precor6x_red precorr 22.5 1.1E+02 0.0024 28.7 3.9 38 100-142 188-230 (256)
444 cd06216 FNR_iron_sulfur_bindin 22.5 1.6E+02 0.0035 26.9 5.1 63 3-68 123-185 (243)
445 COG0143 MetG Methionyl-tRNA sy 22.5 1.4E+02 0.003 31.5 5.0 42 2-45 4-55 (558)
446 PRK14478 nitrogenase molybdenu 22.4 93 0.002 32.2 3.7 33 100-140 384-416 (475)
447 TIGR02418 acolac_catab acetola 22.4 4.3E+02 0.0092 27.8 8.8 27 361-387 62-94 (539)
448 PRK10427 putative PTS system f 22.3 1.9E+02 0.0041 23.3 4.7 39 1-41 1-42 (114)
449 TIGR01501 MthylAspMutase methy 22.3 2E+02 0.0043 24.0 4.9 37 3-41 2-38 (134)
450 PRK08057 cobalt-precorrin-6x r 22.3 1.4E+02 0.003 27.9 4.5 38 100-142 181-222 (248)
451 PRK00039 ruvC Holliday junctio 22.2 2E+02 0.0044 24.8 5.2 47 93-144 45-106 (164)
452 PRK06965 acetolactate synthase 22.1 4.6E+02 0.01 27.9 9.0 27 361-387 85-117 (587)
453 PF01497 Peripla_BP_2: Peripla 22.1 1.2E+02 0.0025 27.6 4.0 32 113-145 60-93 (238)
454 COG1763 MobB Molybdopterin-gua 22.1 2E+02 0.0043 24.9 5.0 39 1-41 1-39 (161)
455 TIGR03568 NeuC_NnaA UDP-N-acet 22.0 6.5E+02 0.014 24.9 9.5 26 113-141 281-306 (365)
456 PF02571 CbiJ: Precorrin-6x re 22.0 1.4E+02 0.003 27.9 4.4 40 98-142 183-226 (249)
457 PRK10916 ADP-heptose:LPS hepto 22.0 3.6E+02 0.0078 26.3 7.7 28 113-143 261-288 (348)
458 PRK01372 ddl D-alanine--D-alan 21.8 1.2E+02 0.0025 29.1 4.1 37 1-39 3-43 (304)
459 PRK06111 acetyl-CoA carboxylas 21.8 5.3E+02 0.011 26.2 9.2 33 1-40 1-33 (450)
460 PF10933 DUF2827: Protein of u 21.8 5.2E+02 0.011 25.5 8.3 88 344-452 255-349 (364)
461 cd06221 sulfite_reductase_like 21.8 1.9E+02 0.0042 26.8 5.5 63 3-69 99-162 (253)
462 cd03412 CbiK_N Anaerobic cobal 21.7 1.7E+02 0.0036 24.0 4.4 36 278-313 2-39 (127)
463 TIGR00416 sms DNA repair prote 21.7 2.7E+02 0.0059 28.6 6.9 37 5-43 97-133 (454)
464 cd01147 HemV-2 Metal binding p 21.6 1.3E+02 0.0028 27.8 4.3 30 113-143 74-106 (262)
465 TIGR02201 heptsyl_trn_III lipo 21.6 3E+02 0.0066 26.7 7.1 28 113-143 260-287 (344)
466 CHL00067 rps2 ribosomal protei 21.6 75 0.0016 29.3 2.5 37 112-149 160-198 (230)
467 PLN03139 formate dehydrogenase 21.4 7.6E+02 0.016 24.8 9.7 69 277-373 200-268 (386)
468 PRK10818 cell division inhibit 21.4 1.5E+02 0.0033 27.7 4.8 40 1-42 1-41 (270)
469 PF05762 VWA_CoxE: VWA domain 21.4 2E+02 0.0043 26.2 5.3 50 4-56 152-202 (222)
470 TIGR02195 heptsyl_trn_II lipop 21.4 3.3E+02 0.0071 26.4 7.3 28 113-143 251-278 (334)
471 PF09547 Spore_IV_A: Stage IV 21.4 3.2E+02 0.007 27.8 6.8 74 355-432 141-233 (492)
472 PF01372 Melittin: Melittin; 21.3 10 0.00023 20.9 -1.8 17 369-385 1-17 (26)
473 cd06215 FNR_iron_sulfur_bindin 21.3 1.5E+02 0.0033 26.8 4.6 64 3-69 104-167 (231)
474 PRK13982 bifunctional SbtC-lik 21.3 1.1E+02 0.0023 31.7 3.7 38 3-42 257-306 (475)
475 cd01980 Chlide_reductase_Y Chl 21.3 1.2E+02 0.0026 30.7 4.2 26 113-142 350-375 (416)
476 COG0299 PurN Folate-dependent 21.2 1.7E+02 0.0037 26.1 4.5 30 113-143 29-58 (200)
477 TIGR01862 N2-ase-Ialpha nitrog 21.2 1.1E+02 0.0023 31.5 3.8 25 113-141 387-411 (443)
478 PF02702 KdpD: Osmosensitive K 21.2 1.7E+02 0.0038 26.3 4.5 40 2-43 5-44 (211)
479 PRK09107 acetolactate synthase 21.1 7.9E+02 0.017 26.3 10.5 27 361-387 75-107 (595)
480 cd06190 T4MO_e_transfer_like T 21.1 1.7E+02 0.0036 26.6 4.9 64 3-69 98-163 (232)
481 PRK15409 bifunctional glyoxyla 21.1 5.7E+02 0.012 24.9 8.7 66 277-372 146-212 (323)
482 PRK12268 methionyl-tRNA synthe 21.0 1E+02 0.0022 32.7 3.7 42 1-44 1-53 (556)
483 cd01452 VWA_26S_proteasome_sub 21.0 3.6E+02 0.0077 23.9 6.6 65 5-72 111-175 (187)
484 PF06180 CbiK: Cobalt chelatas 20.9 1.5E+02 0.0033 27.9 4.5 38 279-316 3-43 (262)
485 cd01143 YvrC Periplasmic bindi 20.9 1.4E+02 0.003 26.0 4.2 30 113-143 60-90 (195)
486 PRK08345 cytochrome-c3 hydroge 20.9 1.8E+02 0.0039 27.7 5.1 64 3-69 109-173 (289)
487 CHL00099 ilvB acetohydroxyacid 20.8 6.7E+02 0.015 26.7 9.9 33 6-41 79-111 (585)
488 PRK08558 adenine phosphoribosy 20.8 1.2E+02 0.0025 28.2 3.6 29 112-141 110-140 (238)
489 cd06209 BenDO_FAD_NAD Benzoate 20.6 1.8E+02 0.004 26.2 5.0 65 3-70 103-167 (228)
490 TIGR00147 lipid kinase, YegS/R 20.5 4.2E+02 0.0092 25.1 7.7 28 359-388 58-91 (293)
491 PRK08155 acetolactate synthase 20.3 9.6E+02 0.021 25.3 11.0 33 6-41 79-111 (564)
492 cd01714 ETF_beta The electron 20.3 1.4E+02 0.0031 26.8 4.0 39 100-143 99-143 (202)
493 PF01012 ETF: Electron transfe 20.3 1.7E+02 0.0036 25.0 4.4 41 98-143 79-122 (164)
494 PF08542 Rep_fac_C: Replicatio 20.1 3.7E+02 0.0081 19.9 6.8 51 417-475 1-51 (89)
495 PRK06067 flagellar accessory p 20.1 1.5E+02 0.0032 27.2 4.2 37 4-42 27-63 (234)
No 1
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.5e-68 Score=539.50 Aligned_cols=469 Identities=40% Similarity=0.738 Sum_probs=358.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCC--eEEEEEcCCCCCCC--CCCcchhhhhccCCCCCeEEEEcCCCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPC--FSIDIIIPTAPFVT--SAGTDDYIASVSATAPSVTFHQLPPPVSRIP 77 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~--h~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~ 77 (485)
+.||+++|+|++||++|++.||+.|+.+|++ +.|||+++....+. . ..+..+........++.|+.+|+.. +|
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~--~p 79 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESAS-EVAAHVRREAASGLDIRFHHLPAVE--PP 79 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhH-HHHHHHhhcccCCCCEEEEECCCCC--CC
Confidence 4599999999999999999999999999632 78999987654331 1 1122221111111269999998652 34
Q ss_pred CCCCCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcc
Q 036436 78 DTLRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (485)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~ 157 (485)
.+.+ +....+..+.+...+.++++++++. .+++|||+|.+.+|+..+| +++|||++.|++++++.++.++++|.
T Consensus 80 ~~~e---~~~~~~~~~~~~~~~~l~~~L~~l~--~pv~cIV~D~f~~Wa~dVA-~elgIP~v~F~t~sA~~~~~~~~~~~ 153 (480)
T PLN00164 80 TDAA---GVEEFISRYIQLHAPHVRAAIAGLS--CPVAALVVDFFCTPLLDVA-RELAVPAYVYFTSTAAMLALMLRLPA 153 (480)
T ss_pred Cccc---cHHHHHHHHHHhhhHHHHHHHHhcC--CCceEEEECCcchhHHHHH-HHhCCCEEEEECccHHHHHHHhhhhh
Confidence 3322 2223344455556667777776652 2569999999999999999 99999999999999999988888765
Q ss_pred cccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccC
Q 036436 158 LHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (485)
.......++... ..+..+||+++++..+++.++....+..+..+....+...+++++++|||.+||+.+++++......
T Consensus 154 ~~~~~~~~~~~~-~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 232 (480)
T PLN00164 154 LDEEVAVEFEEM-EGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCT 232 (480)
T ss_pred hcccccCccccc-CcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccc
Confidence 432211111111 1233589999899999997655433333444445556677889999999999999999988765322
Q ss_pred CCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCC
Q 036436 238 PGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPA 317 (485)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 317 (485)
++...++++.|||+.........+..+++|.+||++++++++|||||||+...+.+++.+++.+|+.++.+|||+++.+.
T Consensus 233 ~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~ 312 (480)
T PLN00164 233 PGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPP 312 (480)
T ss_pred ccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 22223689999999742211111134577999999999999999999999989999999999999999999999998642
Q ss_pred CCCcc--ccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHH
Q 036436 318 PDSVE--NRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMI 395 (485)
Q Consensus 318 ~~~~~--~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~n 395 (485)
..+.. .+......+|++|.++++.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 313 ~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (480)
T PLN00164 313 AAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392 (480)
T ss_pred ccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhH
Confidence 11000 0011223589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 396 KAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 396 a~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
|+++++.+|+|+.+...+++++.+++++|.++|+++|.|+ +++.+|+||+++++++++++++|||+++++++|++++.
T Consensus 393 a~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~ 472 (480)
T PLN00164 393 AFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIR 472 (480)
T ss_pred HHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9988778999999964321123479999999999999875 37899999999999999999999999999999999999
Q ss_pred hCCCCCC
Q 036436 474 RGRMAPL 480 (485)
Q Consensus 474 ~~~~~~~ 480 (485)
+.+-+|.
T Consensus 473 ~~~~~~~ 479 (480)
T PLN00164 473 HGAVAPT 479 (480)
T ss_pred hccCCCC
Confidence 9988773
No 2
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=7.1e-68 Score=529.63 Aligned_cols=445 Identities=47% Similarity=0.885 Sum_probs=340.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLR 81 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (485)
++||+++|+|++||++|++.||+.|+.+|+.+.||+++..+..+.. .....+.......++++|+.+|+... .+.+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~-~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPE-STATYISSVSSSFPSITFHHLPAVTP-YSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhh-hhhhhhccccCCCCCeEEEEcCCCCC-CCCccc
Confidence 5799999999999999999999999999844456654444443321 11111222112234799999997633 233322
Q ss_pred CCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccccc
Q 036436 82 SPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKN 161 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 161 (485)
...+....+..........+.++++++....+++|||+|.+.+|+..+| +++|||+++|++++++.++.++++|.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA-~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDIT-ADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHH-HHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 2223333455555667777888887763323569999999999999999 999999999999999999888877643221
Q ss_pred cC-ccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccCCCC
Q 036436 162 TT-KSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPGE 240 (485)
Q Consensus 162 ~~-~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (485)
.. .... ......+||+++++..+++.++..+....+..+........+++++++|||.+||+.+++++.....
T Consensus 160 ~~~~~~~--~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~---- 233 (451)
T PLN03004 160 TPGKNLK--DIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELC---- 233 (451)
T ss_pred ccccccc--cCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCC----
Confidence 11 0110 1123468999999999999866544434455556666677788999999999999999998865320
Q ss_pred CCCCeeeeCCccCCCCCCCC-CCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCC
Q 036436 241 TLPPLYCIGPVVGRGNGENR-GRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPD 319 (485)
Q Consensus 241 ~~~~~~~vGpl~~~~~~~~~-~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~ 319 (485)
.++++.|||++........ ...+.+|.+|||+++++++|||||||+..++.+++++++.+|+.++.+|||+++.+...
T Consensus 234 -~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~ 312 (451)
T PLN03004 234 -FRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL 312 (451)
T ss_pred -CCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc
Confidence 1579999999753221100 01235699999999989999999999999999999999999999999999999853110
Q ss_pred Cccccc-cccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHH
Q 036436 320 SVENRS-SLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAV 398 (485)
Q Consensus 320 ~~~~~~-~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 398 (485)
..+. .....+|++|++|++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++
T Consensus 313 --~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~ 390 (451)
T PLN03004 313 --EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVM 390 (451)
T ss_pred --cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHH
Confidence 0000 1122489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 036436 399 VVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRV 463 (485)
Q Consensus 399 v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 463 (485)
+++++|+|+.++..+ ++.+++++|+++|+++|.|++ ||+|++++++..++++++||||++
T Consensus 391 ~~~~~g~g~~l~~~~--~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 391 IVDEIKIAISMNESE--TGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHhCceEEecCCc--CCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 987789999997532 234899999999999999877 999999999999999999999854
No 3
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.4e-67 Score=528.35 Aligned_cols=452 Identities=31% Similarity=0.590 Sum_probs=349.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCC-CCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSR-IPDT 79 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-l~~~ 79 (485)
+.||+++|+|++||++|++.||+.|+ ++| +.|||+++..... .+.. .. ...+++.+..+|.+..+ +|..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g--~~vT~v~t~~n~~---~~~~---~~-~~~~~i~~~~lp~p~~~glp~~ 75 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHG--FHVTVFVLETDAA---SAQS---KF-LNSTGVDIVGLPSPDISGLVDP 75 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCC--cEEEEEeCCCchh---hhhh---cc-ccCCCceEEECCCccccCCCCC
Confidence 35999999999999999999999998 799 9999997663321 1101 10 11236899999864311 4311
Q ss_pred CCCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccc
Q 036436 80 LRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (485)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 159 (485)
. .+....+......+.+.+++++++.. .+|+|||+|.+++|+..+| +++|||++.|++++++..+.+.+.|.+.
T Consensus 76 ~---~~~~~~~~~~~~~~~~~~~~~l~~~~--~~p~cvV~D~f~~Wa~dVA-~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 76 S---AHVVTKIGVIMREAVPTLRSKIAEMH--QKPTALIVDLFGTDALCLG-GEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred C---ccHHHHHHHHHHHhHHHHHHHHHhcC--CCCeEEEECCcchhHHHHH-HHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 1 12222344455556677778877652 3789999999999999999 9999999999999998888777766432
Q ss_pred cccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccCCC
Q 036436 160 KNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPG 239 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (485)
.....+... ...+..+||+++++..+++..+.......+..+.+......+++++++|||.+||+.+++++........
T Consensus 150 ~~~~~~~~~-~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 150 KDIKEEHTV-QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred ccccccccc-CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 221111100 1123458999888888888644443334456666666677889999999999999999998865211110
Q ss_pred CCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCC
Q 036436 240 ETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPD 319 (485)
Q Consensus 240 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~ 319 (485)
...++++.|||+....... ..+++|.+||++++++++|||||||+..++.+++++++.+|+.++.+|||+++.+...
T Consensus 229 ~~~~~v~~VGPl~~~~~~~---~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~ 305 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQSS---KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDG 305 (481)
T ss_pred ccCCceEEecCccCCcCCC---cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 0115799999997642211 3456799999999889999999999999999999999999999999999999753211
Q ss_pred Cc-----c--cc---ccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc
Q 036436 320 SV-----E--NR---SSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (485)
Q Consensus 320 ~~-----~--~~---~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 389 (485)
+. . .+ ....+.+|++|.+|++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~ 385 (481)
T PLN02992 306 SACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF 385 (481)
T ss_pred ccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc
Confidence 00 0 00 01123589999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMR--DGGSSRVALDN 467 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~ 467 (485)
+||+.||+++++++|+|+.++.. ++.++.++|+++|+++|.+++++.++++++++++.++++++ +||||++++++
T Consensus 386 ~DQ~~na~~~~~~~g~gv~~~~~---~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~ 462 (481)
T PLN02992 386 AEQNMNAALLSDELGIAVRSDDP---KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCR 462 (481)
T ss_pred chhHHHHHHHHHHhCeeEEecCC---CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 99999999997688999999752 12389999999999999887788899999999999999994 69999999999
Q ss_pred HHHHHHhC
Q 036436 468 LVESFKRG 475 (485)
Q Consensus 468 l~~~~~~~ 475 (485)
|++.+.+.
T Consensus 463 ~v~~~~~~ 470 (481)
T PLN02992 463 VTKECQRF 470 (481)
T ss_pred HHHHHHHH
Confidence 99998764
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.2e-67 Score=524.18 Aligned_cols=437 Identities=26% Similarity=0.463 Sum_probs=339.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC-CC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDT-LR 81 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~-~~ 81 (485)
+||+++|+|++||++|++.||+.|+.+| +.|||+++.... . +.. ...+++.|..+|+. +|++ .+
T Consensus 8 ~HVvlvPfpaqGHi~P~l~LAk~La~~G--~~VT~v~T~~n~--~---~~~-----~~~~~i~~~~ip~g---lp~~~~~ 72 (451)
T PLN02410 8 RRVVLVPVPAQGHISPMMQLAKTLHLKG--FSITIAQTKFNY--F---SPS-----DDFTDFQFVTIPES---LPESDFK 72 (451)
T ss_pred CEEEEECCCccccHHHHHHHHHHHHcCC--CEEEEEeCcccc--c---ccc-----cCCCCeEEEeCCCC---CCccccc
Confidence 4999999999999999999999999999 999999765331 1 000 11236899988853 6653 23
Q ss_pred CCCCcHHHHHHHHHhhchhHHHHHHHhhc--cCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccc
Q 036436 82 SPADFPALVYELGELNNPNLHETLITISK--RSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 159 (485)
. ......+..+.+.....++++++++.. ..+++|||+|.+.+|+..+| +++|||++.|++++++.++.+++++.+.
T Consensus 73 ~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA-~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 73 N-LGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAA-KEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred c-cCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHH-HHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 2 222333333444566777888877642 24579999999999999999 9999999999999999887776654433
Q ss_pred cccC-cccccc-CcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccC
Q 036436 160 KNTT-KSFREL-GSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237 (485)
Q Consensus 160 ~~~~-~~~~~~-~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (485)
.... .+.... ++....+|++++++..+++...+.........+.. .....+++++++|||.+||+.+++++....
T Consensus 151 ~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-- 227 (451)
T PLN02410 151 ANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQL-- 227 (451)
T ss_pred hccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhcc--
Confidence 2111 111110 11234589998888888886443322222222222 223567889999999999999999887643
Q ss_pred CCCCCCCeeeeCCccCCCCCC-CCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCC
Q 036436 238 PGETLPPLYCIGPVVGRGNGE-NRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAP 316 (485)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~ 316 (485)
+ +++++|||+....... ..+....+|.+||++++++++|||||||....+.+++.+++.+|+.++.+|||+++.+
T Consensus 228 -~---~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~ 303 (451)
T PLN02410 228 -Q---IPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPG 303 (451)
T ss_pred -C---CCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 2 5899999997532211 1113345689999999989999999999999999999999999999999999999853
Q ss_pred CCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHH
Q 036436 317 APDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIK 396 (485)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na 396 (485)
..+ .......+|++|.+|++.++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||
T Consensus 304 ~~~----~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 378 (451)
T PLN02410 304 SVR----GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNA 378 (451)
T ss_pred ccc----ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHH
Confidence 111 00122348999999998665 4559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 397 AVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 397 ~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
+++++.+|+|+.+. .. +++++|+++|+++|.+++++.||+||+++++++++++.+||||++++++|++.++.
T Consensus 379 ~~~~~~~~~G~~~~-~~-----~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 379 RYLECVWKIGIQVE-GD-----LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHhCeeEEeC-Cc-----ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99988889999997 45 89999999999999888788999999999999999999999999999999999864
No 5
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-66 Score=519.82 Aligned_cols=456 Identities=30% Similarity=0.574 Sum_probs=349.8
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCC-C-
Q 036436 1 MK-DTIVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSR-I- 76 (485)
Q Consensus 1 m~-~~il~~~~~~~GHv~P~l~La~~L~~r-G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-l- 76 (485)
|. +||+++|+|++||++|++.||+.|+++ | ..|||+++....... .-...+.... ..++++++.+|+...+ +
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g--~~vT~v~t~~~~~~~-~~~~~~~~~~-~~~~i~~~~lp~~~~~~l~ 76 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLN--IHVTILAVTSGSSSP-TETEAIHAAA-ARTTCQITEIPSVDVDNLV 76 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCC--CeEEEEECCCchhhh-cccccccccc-CCCceEEEECCCCccccCC
Confidence 53 499999999999999999999999987 9 999999866543211 0011111110 1125999999965321 2
Q ss_pred CCCCCCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCc-eEEEecchhHhHhHHhhh
Q 036436 77 PDTLRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIP-TYYYFTTAGSVLAANLYL 155 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP-~v~~~~~~~~~~~~~~~~ 155 (485)
+.+ .+....+....+.+.+.++++++++.. +++|||+|.+++|+..+| +++||| .+.+++++++..+.++|+
T Consensus 77 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~ciV~D~f~~w~~~vA-~~lgIP~~~~f~~~~a~~~~~~~~l 149 (470)
T PLN03015 77 EPD----ATIFTKMVVKMRAMKPAVRDAVKSMKR--KPTVMIVDFFGTALMSIA-DDVGVTAKYVYIPSHAWFLAVMVYL 149 (470)
T ss_pred CCC----ccHHHHHHHHHHhchHHHHHHHHhcCC--CCeEEEEcCCcHHHHHHH-HHcCCCEEEEEcCHHHHHHHHHHhh
Confidence 111 134445666666777888888877632 689999999999999999 999999 588888888888777777
Q ss_pred cccccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcc
Q 036436 156 PTLHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQ 235 (485)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (485)
|............. ..+..+||+++++..+++..+.......+..+.+..+...+++++++|||.+||+.+++.+...+
T Consensus 150 ~~~~~~~~~~~~~~-~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 150 PVLDTVVEGEYVDI-KEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred hhhhcccccccCCC-CCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 65322111110010 12345899999999999975544333334555566666788999999999999999998887631
Q ss_pred cCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeC
Q 036436 236 CIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRA 315 (485)
Q Consensus 236 ~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~ 315 (485)
......-++++.|||+....... +.+++|.+|||+++++++|||||||...++.+++.+++.+|+.++.+|||+++.
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~~~---~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~ 305 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNVHV---EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRR 305 (470)
T ss_pred ccccccCCceEEecCCCCCcccc---cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 10000014699999998532211 234579999999998999999999999999999999999999999999999975
Q ss_pred CCCC-Ccc-cc-ccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccch
Q 036436 316 PAPD-SVE-NR-SSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392 (485)
Q Consensus 316 ~~~~-~~~-~~-~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 392 (485)
+... +.. .+ ....+.+|++|.+|++.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 306 ~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ 385 (470)
T PLN03015 306 PASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385 (470)
T ss_pred CccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccch
Confidence 4210 000 00 01233689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 036436 393 KMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDS--EKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (485)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (485)
+.||+++++.+|+|+.+.... .++.++.++|+++|+++|.+ ++|+++|+||++|++++++++++||||++++++|++
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~-~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~ 464 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELP-SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAK 464 (470)
T ss_pred HHHHHHHHHHhCeeEEecccc-cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999988999999996211 12359999999999999963 568899999999999999999999999999999998
Q ss_pred HH
Q 036436 471 SF 472 (485)
Q Consensus 471 ~~ 472 (485)
.+
T Consensus 465 ~~ 466 (470)
T PLN03015 465 RC 466 (470)
T ss_pred hc
Confidence 75
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-66 Score=519.21 Aligned_cols=425 Identities=25% Similarity=0.475 Sum_probs=340.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCC-CCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPD-TLR 81 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~-~~~ 81 (485)
.||+++|+|++||++|++.||+.|+.+| +.|||+++....+.. .. ...++++|+.+|+ + +|+ +.+
T Consensus 6 ~hvv~~P~paqGHi~P~l~lAk~La~~G--~~vT~v~t~~~~~~~-------~~--~~~~~i~~~~ipd--g-lp~~~~~ 71 (449)
T PLN02173 6 GHVLAVPFPSQGHITPIRQFCKRLHSKG--FKTTHTLTTFIFNTI-------HL--DPSSPISIATISD--G-YDQGGFS 71 (449)
T ss_pred cEEEEecCcccccHHHHHHHHHHHHcCC--CEEEEEECCchhhhc-------cc--CCCCCEEEEEcCC--C-CCCcccc
Confidence 4999999999999999999999999999 999999876433221 10 0124699999985 4 776 333
Q ss_pred CCCCcHHHHHHHHHhhchhHHHHHHHhhccCCc-cEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhccccc
Q 036436 82 SPADFPALVYELGELNNPNLHETLITISKRSNL-KAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHK 160 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~p-D~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 160 (485)
...+....+..+.+...+.+++++++...+.+| +|||+|.+.+|+..+| +++|||++.|++++++..+.+++ +...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA-~elgIP~v~F~~~~a~~~~~~~~-~~~~- 148 (449)
T PLN02173 72 SAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLA-REFGLAAAPFFTQSCAVNYINYL-SYIN- 148 (449)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHH-HHhCCCEEEEechHHHHHHHHHh-HHhc-
Confidence 333444434444446677888888775322244 9999999999999999 99999999999998887765543 2211
Q ss_pred ccCccccccCcccccCCCCCCCCcccCCCcccCC--CchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccCC
Q 036436 161 NTTKSFRELGSALLNFPGFPPFPARDMALPMHDR--EGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIP 238 (485)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (485)
. +.....+|++|+++..+++.++... ....+..+.+..+...+++++++|||.+||+.+++++...
T Consensus 149 ~--------~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---- 216 (449)
T PLN02173 149 N--------GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---- 216 (449)
T ss_pred c--------CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc----
Confidence 1 1123447899888889998766432 2234455566667778899999999999999998887532
Q ss_pred CCCCCCeeeeCCccCCC--------CCC---CCC--CCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhC
Q 036436 239 GETLPPLYCIGPVVGRG--------NGE---NRG--RDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS 305 (485)
Q Consensus 239 ~~~~~~~~~vGpl~~~~--------~~~---~~~--~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~ 305 (485)
++++.|||++... ... ..| ..++.|.+||+.++++++|||||||+...+.+++.+++.+| +
T Consensus 217 ----~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s 290 (449)
T PLN02173 217 ----CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--S 290 (449)
T ss_pred ----CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--c
Confidence 4699999997421 000 001 12346999999999999999999999999999999999999 7
Q ss_pred CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEe
Q 036436 306 GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (485)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 385 (485)
+.+|+|+++.+ ....+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 291 ~~~flWvvr~~----------~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 360 (449)
T PLN02173 291 NFSYLWVVRAS----------EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVA 360 (449)
T ss_pred CCCEEEEEecc----------chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEe
Confidence 78899999753 12348899999987788998899999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 036436 386 WPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVAL 465 (485)
Q Consensus 386 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 465 (485)
+|+++||+.||+++++.||+|+.+...+ .++.++.++|+++|+++|.|++|+.+|+||+++++++++++++||||++++
T Consensus 361 ~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~-~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l 439 (449)
T PLN02173 361 MPQWTDQPMNAKYIQDVWKVGVRVKAEK-ESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDINI 439 (449)
T ss_pred cCchhcchHHHHHHHHHhCceEEEeecc-cCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999998889999997543 124579999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 036436 466 DNLVESFK 473 (485)
Q Consensus 466 ~~l~~~~~ 473 (485)
++|++++.
T Consensus 440 ~~~v~~~~ 447 (449)
T PLN02173 440 NTFVSKIQ 447 (449)
T ss_pred HHHHHHhc
Confidence 99999875
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.2e-66 Score=521.91 Aligned_cols=449 Identities=27% Similarity=0.481 Sum_probs=344.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCC-CCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSR-IPDTLR 81 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-l~~~~~ 81 (485)
.||+++|||++||++|++.||+.|+.+| +.|||+++..... .+.......++++++.+|.+..+ +|++.+
T Consensus 10 ~HVvl~PfpaqGHi~P~l~LAk~La~~G--~~VTfv~T~~n~~-------~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~ 80 (477)
T PLN02863 10 THVLVFPFPAQGHMIPLLDLTHRLALRG--LTITVLVTPKNLP-------FLNPLLSKHPSIETLVLPFPSHPSIPSGVE 80 (477)
T ss_pred CEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCCcHH-------HHhhhcccCCCeeEEeCCCCCcCCCCCCCc
Confidence 5999999999999999999999999999 9999997764322 12211112346888887754321 777665
Q ss_pred CCCCc----HHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcc
Q 036436 82 SPADF----PALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (485)
Q Consensus 82 ~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~ 157 (485)
...+. ...+........+.+.+++++.. .+|+|||+|.+.+|+..+| +++|||++.|++++++.++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~--~~p~cvI~D~f~~Wa~dVA-~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALGELYAPLLSWFRSHP--SPPVAIISDMFLGWTQNLA-CQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred ChhhcchhhHHHHHHHHHHhHHHHHHHHHhCC--CCCeEEEEcCchHhHHHHH-HHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 54332 22344444555666666666531 3679999999999999999 99999999999999999998887653
Q ss_pred cccccCccccccCc--ccccCCCCCCCCcccCCCcccC--CCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHh
Q 036436 158 LHKNTTKSFRELGS--ALLNFPGFPPFPARDMALPMHD--REGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLE 233 (485)
Q Consensus 158 ~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (485)
...... ....... ....+||+++++..+++.++.. ........+.+.......++++++|||.+||+.+++++..
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 158 EMPTKI-NPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccc-cccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 211100 0000000 1124788888998988875532 1222333344444445567889999999999999998876
Q ss_pred cccCCCCCCCCeeeeCCccCCCC-C-------CCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhC
Q 036436 234 GQCIPGETLPPLYCIGPVVGRGN-G-------ENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS 305 (485)
Q Consensus 234 ~~~~~~~~~~~~~~vGpl~~~~~-~-------~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~ 305 (485)
.+ + .++++.|||++.... . ...+..+++|.+||+.++++++|||||||+...+.+++.+++.+|+.+
T Consensus 237 ~~---~--~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 237 EL---G--HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred hc---C--CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 42 1 157999999975321 0 000112457999999999899999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEe
Q 036436 306 GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (485)
Q Consensus 306 ~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 385 (485)
+.+|||+++.+... ......+|++|.++++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 312 ~~~flw~~~~~~~~-----~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~ 386 (477)
T PLN02863 312 GVHFIWCVKEPVNE-----ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLA 386 (477)
T ss_pred CCcEEEEECCCccc-----ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEe
Confidence 99999999754110 0112358999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 036436 386 WPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVAL 465 (485)
Q Consensus 386 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 465 (485)
+|+++||+.||+++++++|+|+++.... .+.++.+++.++|.++|.+ ++.||+||+++++.+++++.+||||++++
T Consensus 387 ~P~~~DQ~~na~~v~~~~gvG~~~~~~~--~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l 462 (477)
T PLN02863 387 WPMAADQFVNASLLVDELKVAVRVCEGA--DTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDL 462 (477)
T ss_pred CCccccchhhHHHHHHhhceeEEeccCC--CCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 9999999999999888899999996422 2347899999999999941 23599999999999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 036436 466 DNLVESFKRGRMA 478 (485)
Q Consensus 466 ~~l~~~~~~~~~~ 478 (485)
++|++.+.+...+
T Consensus 463 ~~~v~~i~~~~~~ 475 (477)
T PLN02863 463 DGFVKHVVELGLE 475 (477)
T ss_pred HHHHHHHHHhccC
Confidence 9999999877543
No 8
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.4e-66 Score=518.98 Aligned_cols=452 Identities=24% Similarity=0.418 Sum_probs=344.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhh--ccCCCCCeEEEEcCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIAS--VSATAPSVTFHQLPPPVSRIPDTL 80 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~l~~~~ 80 (485)
.||+++|+|++||++|++.||+.|+.+| ..|||+++................ .......+.|..+|+ + +|++.
T Consensus 8 ~HVv~~PfpaqGHi~Pml~lA~~La~~G--~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd--g-lp~~~ 82 (480)
T PLN02555 8 VHVMLVSFPGQGHVNPLLRLGKLLASKG--LLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED--G-WAEDD 82 (480)
T ss_pred CEEEEECCcccccHHHHHHHHHHHHhCC--CeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC--C-CCCCc
Confidence 6999999999999999999999999999 999999876433211000000000 000112366665653 4 66654
Q ss_pred CCCCCcHHHHHHHHHhhchhHHHHHHHhhcc-CCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccc
Q 036436 81 RSPADFPALVYELGELNNPNLHETLITISKR-SNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 159 (485)
+...+....+..+.....+.++++++.+..+ .+++|||+|.+.+|+..+| +++|||+++|++++++.++.+++++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA-~~~gIP~~~F~t~~a~~~~~~~~~~~~~ 161 (480)
T PLN02555 83 PRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVA-EELGIPSAVLWVQSCACFSAYYHYYHGL 161 (480)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHH-HHcCCCeEEeecccHHHHHHHHHHhhcC
Confidence 4333443333334345667778888765322 2359999999999999999 9999999999999999998887764321
Q ss_pred cccCccccccCcccccCCCCCCCCcccCCCcccC--CCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccC
Q 036436 160 KNTTKSFRELGSALLNFPGFPPFPARDMALPMHD--REGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (485)
. ...-....+.+..+||+|+++..+++.++.. .....++.+.+..+...+++++++|||.+||+.++..+....
T Consensus 162 ~--~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~-- 237 (480)
T PLN02555 162 V--PFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC-- 237 (480)
T ss_pred C--CcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC--
Confidence 0 0000000112345899999999999976542 123345556666667788899999999999999988876532
Q ss_pred CCCCCCCeeeeCCccCCCC---C---CCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEE
Q 036436 238 PGETLPPLYCIGPVVGRGN---G---ENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLW 311 (485)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~---~---~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~ 311 (485)
| ++.|||+..... . ...+..+++|.+||++++++++|||||||+...+.+++.+++.+|+.++.+|||
T Consensus 238 -----~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW 311 (480)
T PLN02555 238 -----P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLW 311 (480)
T ss_pred -----C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEE
Confidence 4 999999975321 1 101234578999999998889999999999999999999999999999999999
Q ss_pred EEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccc
Q 036436 312 VVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAE 391 (485)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 391 (485)
+++..... .......+|+++.++++. |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 312 ~~~~~~~~----~~~~~~~lp~~~~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~D 386 (480)
T PLN02555 312 VMRPPHKD----SGVEPHVLPEEFLEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGD 386 (480)
T ss_pred EEecCccc----ccchhhcCChhhhhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccc
Confidence 99743100 001123578899888764 4566699999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 036436 392 QKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
|+.||+++++.||+|+.+.......+.++.++|.++|+++|.+++|+++|+||++|++++++++++||||++++++|+++
T Consensus 387 Q~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~ 466 (480)
T PLN02555 387 QVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDK 466 (480)
T ss_pred cHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999988999999953111123489999999999999888889999999999999999999999999999999999
Q ss_pred HHhC
Q 036436 472 FKRG 475 (485)
Q Consensus 472 ~~~~ 475 (485)
+.+.
T Consensus 467 i~~~ 470 (480)
T PLN02555 467 LVRK 470 (480)
T ss_pred HHhc
Confidence 9876
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=7.4e-66 Score=516.65 Aligned_cols=452 Identities=32% Similarity=0.627 Sum_probs=341.4
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC
Q 036436 1 MK-DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDT 79 (485)
Q Consensus 1 m~-~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 79 (485)
|. .||+++|+|++||++|++.||+.|+.+|+...|||+++....+. ..+..+.......++++|+.+|+.+. .++.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~-~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQS--HLDTYVKSIASSQPFVRFIDVPELEE-KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcch--hhHHhhhhccCCCCCeEEEEeCCCCC-CCcc
Confidence 54 49999999999999999999999999985578999987765431 11222222211234799999995432 2221
Q ss_pred CCCCCCcHHHHHHHHHhhchhHHHHHHHhhc----c-CCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhh
Q 036436 80 LRSPADFPALVYELGELNNPNLHETLITISK----R-SNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLY 154 (485)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~-~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~ 154 (485)
. ...+....+....+...+.+++.++++.+ + .+++|||+|.+.+|+..+| +++|||++.|++++++.++.+++
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA-~~~gip~~~f~~~~a~~~~~~~~ 155 (468)
T PLN02207 78 G-GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVA-KDVSLPFYVFLTTNSGFLAMMQY 155 (468)
T ss_pred c-cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHH-HHhCCCEEEEECccHHHHHHHHH
Confidence 1 11344445555555554444444444432 1 2349999999999999999 99999999999999998888877
Q ss_pred hcccccccC-ccccccCcccccCCCC-CCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHH
Q 036436 155 LPTLHKNTT-KSFRELGSALLNFPGF-PPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAML 232 (485)
Q Consensus 155 ~p~~~~~~~-~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (485)
++....... ..... .+....+||+ +++...+++.++.... .+..+.+......+++++++||+.+||..+++.+.
T Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~vPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~ 232 (468)
T PLN02207 156 LADRHSKDTSVFVRN-SEEMLSIPGFVNPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFL 232 (468)
T ss_pred hhhccccccccCcCC-CCCeEECCCCCCCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHH
Confidence 765432110 00101 1123468998 6899999997654322 14445555566778899999999999999988875
Q ss_pred hcccCCCCCCCCeeeeCCccCCCCCCCC---CCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeE
Q 036436 233 EGQCIPGETLPPLYCIGPVVGRGNGENR---GRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKF 309 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~vGpl~~~~~~~~~---~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~ 309 (485)
... ..|+++.|||+......... ...+++|.+||++++++++|||||||....+.+++++++.+|+.++.+|
T Consensus 233 ~~~-----~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 233 DEQ-----NYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred hcc-----CCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 410 12789999999754321100 0123679999999988999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc
Q 036436 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (485)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 389 (485)
||+++.+.. ...+.+|++|+++++.++ .+.+|+||.+||+|++++||||||||||++||+++|||||++|++
T Consensus 308 lW~~r~~~~-------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 308 LWSLRTEEV-------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred EEEEeCCCc-------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 999985311 113458999999987665 555999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhceEEEEeccCC--CCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEE--GDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDN 467 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~--~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (485)
+||+.||+++++.+|+|+.+..... .++.++.++|+++|+++|.+ +++.||+||+++++.+++++++||||++++++
T Consensus 380 ~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~ 458 (468)
T PLN02207 380 AEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEK 458 (468)
T ss_pred ccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999998877999998842110 12347999999999999973 35669999999999999999999999999999
Q ss_pred HHHHHHh
Q 036436 468 LVESFKR 474 (485)
Q Consensus 468 l~~~~~~ 474 (485)
|++++..
T Consensus 459 ~v~~~~~ 465 (468)
T PLN02207 459 FIHDVIG 465 (468)
T ss_pred HHHHHHh
Confidence 9998864
No 10
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.6e-65 Score=510.26 Aligned_cols=424 Identities=22% Similarity=0.374 Sum_probs=329.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC--CCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPP--VSRIPDT 79 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~l~~~ 79 (485)
+.||+++|+|++||++|++.||+.|+++| |+|||+++..... .+........++.+..++.+ ++ +|++
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G--~~VT~vtt~~~~~-------~i~~~~a~~~~i~~~~l~~p~~dg-Lp~g 73 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKG--HRVTFLLPKKAQK-------QLEHHNLFPDSIVFHPLTIPPVNG-LPAG 73 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCC--CEEEEEeccchhh-------hhhcccCCCCceEEEEeCCCCccC-CCCC
Confidence 35999999999999999999999999999 9999998654322 22222111235667766543 44 7766
Q ss_pred CCCCCCc----HHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhh
Q 036436 80 LRSPADF----PALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYL 155 (485)
Q Consensus 80 ~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~ 155 (485)
.+...++ ...+....+...+.+++++++. ++||||+| ++.|+..+| +++|||++.|++++++..+ ++++
T Consensus 74 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~----~~~cVV~D-~~~wa~~vA-~e~giP~~~f~~~~a~~~~-~~~~ 146 (442)
T PLN02208 74 AETTSDIPISMDNLLSEALDLTRDQVEAAVRAL----RPDLIFFD-FAQWIPEMA-KEHMIKSVSYIIVSATTIA-HTHV 146 (442)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEC-CcHhHHHHH-HHhCCCEEEEEhhhHHHHH-HHcc
Confidence 5433222 2234444555666677777665 89999999 589999999 9999999999999998654 4444
Q ss_pred cccccccCccccccCcccccCCCCCC----CCcccCCCcccCCCchhHHHHHHH-HhhhcccceEEEcCchhhHHHHHHH
Q 036436 156 PTLHKNTTKSFRELGSALLNFPGFPP----FPARDMALPMHDREGKVYKGLVDT-GIQMAKSAGIIVNTFELLQERAIKA 230 (485)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (485)
+.. . ....+|++|. ++..+++.+ ......+..+... .+...+++++++|||.+||+.++++
T Consensus 147 ~~~--~----------~~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~ 212 (442)
T PLN02208 147 PGG--K----------LGVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDY 212 (442)
T ss_pred Ccc--c----------cCCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHH
Confidence 420 0 0112567764 345566642 2222334444432 2456688999999999999999988
Q ss_pred HHhcccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEE
Q 036436 231 MLEGQCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFL 310 (485)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i 310 (485)
+.+.. . |+++.|||+........ ..+.+|.+|||+++++++|||||||+..++.+++.+++.+++.++.+++
T Consensus 213 ~~~~~---~---~~v~~vGpl~~~~~~~~--~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~ 284 (442)
T PLN02208 213 ISRQY---H---KKVLLTGPMFPEPDTSK--PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFL 284 (442)
T ss_pred HHhhc---C---CCEEEEeecccCcCCCC--CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEE
Confidence 87642 1 68999999986433111 4567899999999889999999999998899999999999999999999
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccccc
Q 036436 311 WVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (485)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 390 (485)
|+++.+... ......+|++|.++++.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 285 wv~r~~~~~-----~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~ 359 (442)
T PLN02208 285 IAVKPPRGS-----STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLS 359 (442)
T ss_pred EEEeCCCcc-----cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcch
Confidence 999853110 011246899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 036436 391 EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (485)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l 468 (485)
||+.||+++++.+|+|+.++..+ ++.+++++|+++|+++|+++ +++.+|+|++++++.+. ++|||++++++|
T Consensus 360 DQ~~na~~~~~~~g~gv~~~~~~--~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~ 433 (442)
T PLN02208 360 DQVLFTRLMTEEFEVSVEVSREK--TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKF 433 (442)
T ss_pred hhHHHHHHHHHHhceeEEecccc--CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHH
Confidence 99999999877799999997643 34689999999999999875 38899999999999874 378999999999
Q ss_pred HHHHHhC
Q 036436 469 VESFKRG 475 (485)
Q Consensus 469 ~~~~~~~ 475 (485)
++.++++
T Consensus 434 v~~l~~~ 440 (442)
T PLN02208 434 VEELQEY 440 (442)
T ss_pred HHHHHHh
Confidence 9998653
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.7e-65 Score=512.36 Aligned_cols=431 Identities=23% Similarity=0.417 Sum_probs=330.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHH--HHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKL--ILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTL 80 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~--L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 80 (485)
.||+++|+|++||++|++.||++ |++|| ++|||+++..... .++......+.+++..+++ + +|++.
T Consensus 9 ~hvv~~P~pa~GHi~P~l~La~~L~L~~~G--~~VT~v~t~~~~~-------~~~~~~~~~~~~~~~~~~~--g-lp~~~ 76 (456)
T PLN02210 9 THVLMVTLAFQGHINPMLKLAKHLSLSSKN--LHFTLATTEQARD-------LLSTVEKPRRPVDLVFFSD--G-LPKDD 76 (456)
T ss_pred CEEEEeCCcccccHHHHHHHHHHHHhhcCC--cEEEEEeccchhh-------hhccccCCCCceEEEECCC--C-CCCCc
Confidence 59999999999999999999999 56999 9999998764322 1222111234677777663 3 66654
Q ss_pred CCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhccccc
Q 036436 81 RSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHK 160 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 160 (485)
. .+....+..+.+...+.+.+++++. +|||||+|.+++|+..+| +++|||.+.|+++++..++.+.+++....
T Consensus 77 ~--~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~vI~D~~~~w~~~vA-~~lgIP~~~f~~~sa~~~~~~~~~~~~~~ 149 (456)
T PLN02210 77 P--RAPETLLKSLNKVGAKNLSKIIEEK----RYSCIISSPFTPWVPAVA-AAHNIPCAILWIQACGAYSVYYRYYMKTN 149 (456)
T ss_pred c--cCHHHHHHHHHHhhhHHHHHHHhcC----CCcEEEECCcchhHHHHH-HHhCCCEEEEecccHHHHHHHHhhhhccC
Confidence 2 1233333333334555566666554 899999999999999999 99999999999999988887766542211
Q ss_pred ccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHH-HHHhhhcccceEEEcCchhhHHHHHHHHHhcccCCC
Q 036436 161 NTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLV-DTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPG 239 (485)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (485)
... ...+ ......+|+++++...+++..+.......+.... +.......++++++|||.++|+.+++.+.+ .
T Consensus 150 ~~~-~~~~-~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~---- 222 (456)
T PLN02210 150 SFP-DLED-LNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L---- 222 (456)
T ss_pred CCC-cccc-cCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c----
Confidence 111 1100 0123458899888888888765544333333333 333445677899999999999999888765 2
Q ss_pred CCCCCeeeeCCccCC----C-CCC-------CCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCC
Q 036436 240 ETLPPLYCIGPVVGR----G-NGE-------NRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGV 307 (485)
Q Consensus 240 ~~~~~~~~vGpl~~~----~-~~~-------~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~ 307 (485)
+++++|||++.. . ... ..|..+++|.+||++++++++|||||||....+.+++++++.+|+.++.
T Consensus 223 ---~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 223 ---KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred ---CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 579999999742 1 100 0123456799999999888999999999998999999999999999999
Q ss_pred eEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEec
Q 036436 308 KFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (485)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 386 (485)
+|||+++... ....+.+|.++.+ +++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 300 ~flw~~~~~~----------~~~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 300 PFLWVIRPKE----------KAQNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred CEEEEEeCCc----------cccchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 9999997531 1113356666664 445 566999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 036436 387 PLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALD 466 (485)
Q Consensus 387 P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 466 (485)
|+++||+.||+++++.+|+|+.+...+ .++.+++++|+++|+++|.+++|+.+|+||++|++.+++++++||||+++++
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~~l~~~~-~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~ 447 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGVRMRNDA-VDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLD 447 (456)
T ss_pred ccccccHHHHHHHHHHhCeEEEEeccc-cCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999986689999997531 1234999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHh
Q 036436 467 NLVESFKR 474 (485)
Q Consensus 467 ~l~~~~~~ 474 (485)
+|++.+.-
T Consensus 448 ~~v~~~~~ 455 (456)
T PLN02210 448 LFISDITI 455 (456)
T ss_pred HHHHHHhc
Confidence 99998763
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8e-65 Score=517.03 Aligned_cols=456 Identities=36% Similarity=0.658 Sum_probs=340.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccC-CCCCeEEEEcCCCCCCCCCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSA-TAPSVTFHQLPPPVSRIPDT 79 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~l~~~ 79 (485)
||.||+++|+|++||++|++.||+.|+.+|.+..|||+++.............+.+... ..++++|+.+|+... +..
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~--~~~ 78 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ--PTT 78 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC--Ccc
Confidence 88999999999999999999999999999733679999765432211000111222111 133699999986532 111
Q ss_pred CCCCCCcHHHHHHHHHhhchhHHHHHHHhhcc------CCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHh
Q 036436 80 LRSPADFPALVYELGELNNPNLHETLITISKR------SNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANL 153 (485)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~ 153 (485)
. . . .+..++......+++.++++..+ .+++|||+|.+++|+..+| +++|||++.|++++++.++.++
T Consensus 79 -~---~-~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA-~~lgIP~~~F~t~sa~~~~~~~ 151 (481)
T PLN02554 79 -E---D-P-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVA-NEFGVPSYMFYTSNATFLGLQL 151 (481)
T ss_pred -c---c-h-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHH-HHhCCCEEEEeCCcHHHHHHHH
Confidence 1 1 1 34445555566666666665421 1248999999999999999 9999999999999999999988
Q ss_pred hhcccccccCccccc--cCcccccCCCCC-CCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHH
Q 036436 154 YLPTLHKNTTKSFRE--LGSALLNFPGFP-PFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKA 230 (485)
Q Consensus 154 ~~p~~~~~~~~~~~~--~~~~~~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (485)
++|........++.. ....+..+||++ +++..+++..+..+ .++..+.+......+++++++||+.++|..++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 152 HVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 877643221111111 011234589984 78888888655432 3455566666777889999999999999999988
Q ss_pred HHhcccCCCCCCCCeeeeCCccC-CCCCCC-CCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCe
Q 036436 231 MLEGQCIPGETLPPLYCIGPVVG-RGNGEN-RGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVK 308 (485)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vGpl~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~ 308 (485)
+.+... ..|+++.|||+.. ...... ....+++|.+||++++++++|||||||+...+.+++.+++.+|+.++.+
T Consensus 230 l~~~~~----~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 230 FSGSSG----DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred HHhccc----CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCC
Confidence 876311 1268999999943 221110 0134568999999998889999999999989999999999999999999
Q ss_pred EEEEEeCCCCC--Cc-cc-cccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEE
Q 036436 309 FLWVVRAPAPD--SV-EN-RSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPML 384 (485)
Q Consensus 309 ~i~~~~~~~~~--~~-~~-~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v 384 (485)
|||+++.+... +. .. ..+....+|++|.+|+++++ ++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 99999763110 00 00 00112246999999987655 5569999999999999999999999999999999999999
Q ss_pred ecccccchhHHHHHHHHhhceEEEEeccCC------CCCccCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHhc
Q 036436 385 AWPLYAEQKMIKAVVVEEMKVGLAVTRSEE------GDGLVSSAELEQRVSELMD-SEKGRAVKERAVAMKEAAAAAMRD 457 (485)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~------~~~~~~~~~l~~ai~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~ 457 (485)
++|+++||+.||+++.+.+|+|+.+..... +++.+++++|.++|+++|. |++ ||+||+++++++++++++
T Consensus 385 ~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~---~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSD---VRKRVKEMSEKCHVALMD 461 (481)
T ss_pred ecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcC
Confidence 999999999999665578899999974100 0134899999999999996 554 999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhC
Q 036436 458 GGSSRVALDNLVESFKRG 475 (485)
Q Consensus 458 ~g~~~~~~~~l~~~~~~~ 475 (485)
|||+++++++|++++.++
T Consensus 462 gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 462 GGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 999999999999999864
No 13
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-64 Score=509.71 Aligned_cols=431 Identities=23% Similarity=0.387 Sum_probs=332.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
.||+++|+|++||++|++.||+.|+++| ++|||+++..... .+.......++++|+.+|+. ++++..
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~-------~~~~~~~~~~~i~~v~lp~g---~~~~~~- 73 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLSRG--FEPVVITPEFIHR-------RISATLDPKLGITFMSISDG---QDDDPP- 73 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHhCC--CEEEEEeCcchhh-------hhhhccCCCCCEEEEECCCC---CCCCcc-
Confidence 4999999999999999999999999999 9999998764322 11111111246999998864 443221
Q ss_pred CCCcHHHHHHHHH-hhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccccc
Q 036436 83 PADFPALVYELGE-LNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKN 161 (485)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 161 (485)
.++. .+...+. .+.+.+.++++++....+++|||+|.+.+|+..+| +++|||++.|++++++.++.+++++.....
T Consensus 74 -~~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA-~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 74 -RDFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVA-DRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred -ccHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHH-HHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 1222 2333333 46777788887763222458999999999999999 999999999999999888877766543322
Q ss_pred cCccccc--cCccc-ccCCCCCCCCcccCCCcccCC--CchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhccc
Q 036436 162 TTKSFRE--LGSAL-LNFPGFPPFPARDMALPMHDR--EGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQC 236 (485)
Q Consensus 162 ~~~~~~~--~~~~~-~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (485)
....... ....+ ..+||++.++..+++.++... ....+..+.+..+...+++++++|||.+||+.++..+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 230 (448)
T PLN02562 151 GLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYN 230 (448)
T ss_pred cccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhc
Confidence 1100000 00111 258899888889998765332 223455666666777788999999999999988887654321
Q ss_pred CCCCCCCCeeeeCCccCCCCC----CCCCCCcccccccccCCCCCcEEEEecCCCc-cCCHHhHHHHHHHHHhCCCeEEE
Q 036436 237 IPGETLPPLYCIGPVVGRGNG----ENRGRDRHECLSWLDSKPSRSVLFLCFGSLG-SFSSKQLKEMAIGLERSGVKFLW 311 (485)
Q Consensus 237 ~~~~~~~~~~~vGpl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~i~~al~~~~~~~i~ 311 (485)
.| ..|+++.|||+...... ...++.+.+|.+||++++++++|||||||+. ..+.+++++++.+|+.++.+|||
T Consensus 231 ~~--~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW 308 (448)
T PLN02562 231 NG--QNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIW 308 (448)
T ss_pred cc--cCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEE
Confidence 11 12789999999764321 1111234568899999988899999999976 67899999999999999999999
Q ss_pred EEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccc
Q 036436 312 VVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAE 391 (485)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 391 (485)
+++.+ ....+|++|.++.. .|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 309 ~~~~~----------~~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 377 (448)
T PLN02562 309 VLNPV----------WREGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGD 377 (448)
T ss_pred EEcCC----------chhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccc
Confidence 99653 12248889988875 45677799999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 036436 392 QKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
|+.||+++++.+|+|+.+. + +++++|.++|+++|.|++ ||+||+++++++.++ .+||||++++++|+++
T Consensus 378 Q~~na~~~~~~~g~g~~~~--~-----~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~ 446 (448)
T PLN02562 378 QFVNCAYIVDVWKIGVRIS--G-----FGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EARLRSMMNFTTLKDE 446 (448)
T ss_pred hHHHHHHHHHHhCceeEeC--C-----CCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 9999999986689998885 4 899999999999998877 999999999999877 6779999999999998
Q ss_pred HH
Q 036436 472 FK 473 (485)
Q Consensus 472 ~~ 473 (485)
++
T Consensus 447 ~~ 448 (448)
T PLN02562 447 LK 448 (448)
T ss_pred hC
Confidence 63
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-64 Score=509.81 Aligned_cols=449 Identities=28% Similarity=0.496 Sum_probs=335.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC---CCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPP---VSRIPDT 79 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---~~~l~~~ 79 (485)
.||+++|+|++||++|++.||+.|+.+| +.|||+++.... . .+.............++|+.+|.+ ++ +|++
T Consensus 9 ~Hvv~vPfpaqGHi~P~l~LAk~La~~G--~~vT~v~t~~n~--~-~~~~~~~~~~~~~~~i~~~~lp~p~~~dg-lp~~ 82 (491)
T PLN02534 9 LHFVLIPLMAQGHMIPMIDMARLLAERG--VIVSLVTTPQNA--S-RFAKTIDRARESGLPIRLVQIPFPCKEVG-LPIG 82 (491)
T ss_pred CEEEEECCCCcchHHHHHHHHHHHHhCC--CeEEEEECCCcH--H-HHhhhhhhccccCCCeEEEEcCCCCccCC-CCCC
Confidence 5999999999999999999999999999 999999765432 1 122111111001124899999965 24 7766
Q ss_pred CCCCCC-----cHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhh
Q 036436 80 LRSPAD-----FPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLY 154 (485)
Q Consensus 80 ~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~ 154 (485)
.+...+ ....+........+.+.+++++. ..+|+|||+|.+++|+..+| +++|||+++|++++++..+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~--~~pp~cIV~D~f~~Wa~dVA-~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA--KPPPSCIISDKCLSWTSKTA-QRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc--CCCCcEEEECCccHHHHHHH-HHhCCCeEEEecchHHHHHHHHH
Confidence 544322 22233334444555666666543 13689999999999999999 99999999999999988776543
Q ss_pred hcccccccCccccccCcccccCCCCCC---CCcccCCCcccCCCchhHHHHHHHHhh-hcccceEEEcCchhhHHHHHHH
Q 036436 155 LPTLHKNTTKSFRELGSALLNFPGFPP---FPARDMALPMHDREGKVYKGLVDTGIQ-MAKSAGIIVNTFELLQERAIKA 230 (485)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 230 (485)
+....... .... +..+..+|++++ ++..+++..+... ..+..+...... ...++++++|||.+||+.+++.
T Consensus 160 ~~~~~~~~--~~~~-~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 160 IRLHNAHL--SVSS-DSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred HHHhcccc--cCCC-CCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 31111111 0111 122445788874 6777777643221 122333333332 3456799999999999999998
Q ss_pred HHhcccCCCCCCCCeeeeCCccCCCCC-------CCCC-CCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHH
Q 036436 231 MLEGQCIPGETLPPLYCIGPVVGRGNG-------ENRG-RDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGL 302 (485)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vGpl~~~~~~-------~~~~-~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al 302 (485)
+.... + ++++.|||+...... ...+ ..+++|.+||++++++++|||||||.....++++.+++.+|
T Consensus 235 l~~~~---~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl 308 (491)
T PLN02534 235 YEKAI---K---KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGL 308 (491)
T ss_pred HHhhc---C---CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 86543 1 579999999742110 0000 12356999999999899999999999999999999999999
Q ss_pred HhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCc
Q 036436 303 ERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVP 382 (485)
Q Consensus 303 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP 382 (485)
+.++.+|||+++.+... +......+|++|.++++++|+++.+|+||.+||+|++++||||||||||++||+++|||
T Consensus 309 ~~~~~~flW~~r~~~~~----~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 309 EASKKPFIWVIKTGEKH----SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred HhCCCCEEEEEecCccc----cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 99999999999853110 00011246899999998899999999999999999999999999999999999999999
Q ss_pred EEecccccchhHHHHHHHHhhceEEEEeccC-------CCCC-ccCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHH
Q 036436 383 MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE-------EGDG-LVSSAELEQRVSELMD--SEKGRAVKERAVAMKEAAA 452 (485)
Q Consensus 383 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-------~~~~-~~~~~~l~~ai~~vl~--~~~~~~~~~~a~~l~~~~~ 452 (485)
||++|++.||+.||+++++.||+|+++.... ++.+ .+++++|+++|+++|. +++|+.+|+||++|++.++
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985211 0112 5899999999999997 4558899999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhC
Q 036436 453 AAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 453 ~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
+++.+||||++++++|++++.+.
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999743
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-64 Score=511.58 Aligned_cols=437 Identities=31% Similarity=0.498 Sum_probs=338.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTY--HPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDT 79 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~r--G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 79 (485)
+.||+++|+|++||++|++.||++|++| | |+|||+++....+. +.... ...+++|+.+|+. +|.+
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G--~~VT~~~t~~~~~~-------i~~~~-~~~gi~fv~lp~~---~p~~ 76 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPD--ILITFVVTEEWLGL-------IGSDP-KPDNIRFATIPNV---IPSE 76 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCC--cEEEEEeCCchHhH-------hhccC-CCCCEEEEECCCC---CCCc
Confidence 3599999999999999999999999999 9 99999988754332 22211 1247999999863 4443
Q ss_pred CCCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccc
Q 036436 80 LRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (485)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 159 (485)
.....+....+..+.+...+.+.++++++. .++||||+|.+++|+..+| +++|||++.++++++..++.+.+++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA-~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 77 LVRAADFPGFLEAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVG-NRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred cccccCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHH-HHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 332234444344444456667777776653 3689999999999999999 9999999999999998888777765443
Q ss_pred cccCcccccc--Ccc-cccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhccc
Q 036436 160 KNTTKSFREL--GSA-LLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQC 236 (485)
Q Consensus 160 ~~~~~~~~~~--~~~-~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (485)
.....+.... ... ...+|+++++...+++.++.......++.+........+++++++|||.+||+.+++++...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~- 232 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF- 232 (459)
T ss_pred hccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc-
Confidence 2211111110 011 124788888888888876554444445666666666777889999999999999988887643
Q ss_pred CCCCCCCCeeeeCCccCCCCC---CCC---CCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEE
Q 036436 237 IPGETLPPLYCIGPVVGRGNG---ENR---GRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFL 310 (485)
Q Consensus 237 ~~~~~~~~~~~vGpl~~~~~~---~~~---~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i 310 (485)
+ ++++.|||+...... ... ...+.+|.+||+.++++++|||||||+...+.+++++++.+|+.++.+||
T Consensus 233 --~---~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~l 307 (459)
T PLN02448 233 --P---FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFL 307 (459)
T ss_pred --C---CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 1 479999999753211 000 01224789999999889999999999998889999999999999999999
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccccc
Q 036436 311 WVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (485)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 390 (485)
|+++.+ ..++.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 308 w~~~~~---------------~~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~ 371 (459)
T PLN02448 308 WVARGE---------------ASRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFW 371 (459)
T ss_pred EEEcCc---------------hhhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccc
Confidence 988642 123444333 3667779999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 036436 391 EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDNL 468 (485)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l 468 (485)
||+.||+++++.||+|+.+.....+++.+++++|+++|+++|.++ +++.||+||++|++++++++.+||||++++++|
T Consensus 372 DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~ 451 (459)
T PLN02448 372 DQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAF 451 (459)
T ss_pred cchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999999877899999864311123489999999999999864 478899999999999999999999999999999
Q ss_pred HHHHHhCC
Q 036436 469 VESFKRGR 476 (485)
Q Consensus 469 ~~~~~~~~ 476 (485)
++.+.+.|
T Consensus 452 v~~~~~~~ 459 (459)
T PLN02448 452 IRDISQGR 459 (459)
T ss_pred HHHHhccC
Confidence 99998764
No 16
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.1e-64 Score=504.80 Aligned_cols=424 Identities=23% Similarity=0.373 Sum_probs=321.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC--CCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPP--VSRIPDT 79 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~l~~~ 79 (485)
+.||+++|+|++||++|++.||+.|+++| ++|||+++..... .+.......+++.|..++.+ ++ +|++
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~-------~i~~~~~~~~~i~~~~i~lP~~dG-LP~g 73 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKG--HRVTFFLPKKAHK-------QLQPLNLFPDSIVFEPLTLPPVDG-LPFG 73 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCchhh-------hhcccccCCCceEEEEecCCCcCC-CCCc
Confidence 46999999999999999999999999999 9999998654322 12211112235788666533 44 7766
Q ss_pred CCCCCCc----HHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhh
Q 036436 80 LRSPADF----PALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYL 155 (485)
Q Consensus 80 ~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~ 155 (485)
.+...++ ...+........+.++++++.. +|||||+|. ++|+..+| +++|||++.|++++++..+.+++
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~----~p~cVV~D~-~~wa~~vA-~~lgIP~~~F~~~~a~~~~~~~~- 146 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIEAKVRAL----KPDLIFFDF-VHWVPEMA-KEFGIKSVNYQIISAACVAMVLA- 146 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhcC----CCeEEEECC-chhHHHHH-HHhCCCEEEEecHHHHHHHHHhC-
Confidence 5443333 2223444444555555555443 899999996 89999999 99999999999999988877665
Q ss_pred cccccccCccccccCcccccCCCCCC----CCcccC--CCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHH
Q 036436 156 PTLHKNTTKSFRELGSALLNFPGFPP----FPARDM--ALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIK 229 (485)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (485)
+.. . . . ..+|++|. ++..+. +.++ .. ....+.+..+...+++++++|||.+||+.+++
T Consensus 147 ~~~--~----~----~--~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 210 (446)
T PLN00414 147 PRA--E----L----G--FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCD 210 (446)
T ss_pred cHh--h----c----C--CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHH
Confidence 211 0 0 0 12355543 222221 1211 11 12334445556677899999999999999999
Q ss_pred HHHhcccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeE
Q 036436 230 AMLEGQCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKF 309 (485)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~ 309 (485)
.+.+.. + ++++.|||+............+++|.+|||+++++++|||||||....+.+++.+++.+|+.++.+|
T Consensus 211 ~~~~~~---~---~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~F 284 (446)
T PLN00414 211 FIERQC---Q---RKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPF 284 (446)
T ss_pred HHHHhc---C---CCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCe
Confidence 887632 1 4799999997532111000223579999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc
Q 036436 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (485)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 389 (485)
+|+++.+...+ .....+|++|+++++.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 285 lwvvr~~~~~~-----~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 359 (446)
T PLN00414 285 LIAVMPPKGSS-----TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQL 359 (446)
T ss_pred EEEEecCCCcc-----cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcc
Confidence 99998642110 1234689999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDN 467 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (485)
.||+.||+++++.+|+|+.+...+ ++.+++++|+++++++|.++ +++.+|++++++++.+. ++||++ ..+++
T Consensus 360 ~dQ~~na~~~~~~~g~g~~~~~~~--~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~ 433 (446)
T PLN00414 360 ADQVLITRLLTEELEVSVKVQRED--SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADK 433 (446)
T ss_pred cchHHHHHHHHHHhCeEEEecccc--CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHH
Confidence 999999999987899999997532 24589999999999999864 37889999999999874 667745 44899
Q ss_pred HHHHHHhC
Q 036436 468 LVESFKRG 475 (485)
Q Consensus 468 l~~~~~~~ 475 (485)
|++++++.
T Consensus 434 ~v~~~~~~ 441 (446)
T PLN00414 434 FVEALENE 441 (446)
T ss_pred HHHHHHHh
Confidence 99998654
No 17
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.2e-64 Score=502.97 Aligned_cols=436 Identities=24% Similarity=0.407 Sum_probs=335.1
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCC
Q 036436 1 MK-DTIVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPD 78 (485)
Q Consensus 1 m~-~~il~~~~~~~GHv~P~l~La~~L~~-rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 78 (485)
|. .||+++|+|++||++|++.||+.|++ +| +.|||+++..... +...... ...++++|+.+++ + +|+
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G--~~vT~v~t~~~~~-----~~~~~~~-~~~~~i~~~~i~d--g-lp~ 69 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTG--TRVTFATCLSVIH-----RSMIPNH-NNVENLSFLTFSD--G-FDD 69 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCC--cEEEEEeccchhh-----hhhhccC-CCCCCEEEEEcCC--C-CCC
Confidence 53 49999999999999999999999996 79 9999998753211 1111111 1123689999874 4 666
Q ss_pred CCCC-CCCcHHHHHHHHHhhchhHHHHHHHhhcc-CCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhc
Q 036436 79 TLRS-PADFPALVYELGELNNPNLHETLITISKR-SNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLP 156 (485)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p 156 (485)
+... ..+....+........+.+.++++++... .+++|||+|.+.+|+..+| +++|||++.|++++++..+.+++++
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA-~~lgIP~~~f~t~~a~~~~~~~~~~ 148 (455)
T PLN02152 70 GVISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVA-RRFHLPSVLLWIQPAFVFDIYYNYS 148 (455)
T ss_pred ccccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHH-HHhCCCEEEEECccHHHHHHHHHhh
Confidence 5322 23444456666666778888888876432 3569999999999999999 9999999999999999988877654
Q ss_pred ccccccCccccccCcccccCCCCCCCCcccCCCcccCC--CchhHHHHHHHHhhhcc--cceEEEcCchhhHHHHHHHHH
Q 036436 157 TLHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDR--EGKVYKGLVDTGIQMAK--SAGIIVNTFELLQERAIKAML 232 (485)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 232 (485)
... .....+||++++...+++.++... ...+...+.+..+...+ ++++++|||.+||+.++.++.
T Consensus 149 ~~~-----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 149 TGN-----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred ccC-----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 211 113458999888899999866432 12233444444444332 469999999999999988874
Q ss_pred hcccCCCCCCCCeeeeCCccCCCC---CC--C---CCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHh
Q 036436 233 EGQCIPGETLPPLYCIGPVVGRGN---GE--N---RGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER 304 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~vGpl~~~~~---~~--~---~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~ 304 (485)
. .+++.|||+..... .. . .++.+.+|.+|||+++++++|||||||+..++.+++++++.+|+.
T Consensus 218 ~---------~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~ 288 (455)
T PLN02152 218 N---------IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIE 288 (455)
T ss_pred c---------CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 3 35999999975321 00 0 012345799999999888999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCCccccccc--cccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCc
Q 036436 305 SGVKFLWVVRAPAPDSVENRSSL--ESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVP 382 (485)
Q Consensus 305 ~~~~~i~~~~~~~~~~~~~~~~~--~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP 382 (485)
++.+|||+++.+.......+... ...+|++|.++.+.++ ++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 289 s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP 367 (455)
T PLN02152 289 GKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVP 367 (455)
T ss_pred cCCCeEEEEecCcccccccccccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCC
Confidence 99999999986311100000000 1124789998887554 55699999999999999999999999999999999999
Q ss_pred EEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 036436 383 MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSR 462 (485)
Q Consensus 383 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (485)
||++|+++||+.||+++++.||+|+.+.... ++.++.++|+++|+++|+|+ ++.||+||++|++.+++++.+||+|+
T Consensus 368 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~--~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~ 444 (455)
T PLN02152 368 VVAFPMWSDQPANAKLLEEIWKTGVRVRENS--EGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSD 444 (455)
T ss_pred EEeccccccchHHHHHHHHHhCceEEeecCc--CCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 9999999999999999988778888876432 23479999999999999754 66799999999999999999999999
Q ss_pred HHHHHHHHHH
Q 036436 463 VALDNLVESF 472 (485)
Q Consensus 463 ~~~~~l~~~~ 472 (485)
+++++|++++
T Consensus 445 ~nl~~li~~i 454 (455)
T PLN02152 445 KNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=5.7e-64 Score=499.48 Aligned_cols=428 Identities=22% Similarity=0.375 Sum_probs=328.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLR 81 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (485)
++||+++|+|++||++|++.||+.|+.+| +.|||+++..... .... + ........+.+..+|..++ +|.+.+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g--~~vT~~tt~~~~~---~~~~-~-~~~~~~~~v~~~~~p~~~g-lp~g~e 76 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKG--HTVTFLLPKKALK---QLEH-L-NLFPHNIVFRSVTVPHVDG-LPVGTE 76 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCC--CEEEEEeCcchhh---hhcc-c-ccCCCCceEEEEECCCcCC-CCCccc
Confidence 46999999999999999999999999999 9999998654322 1111 1 0000011367777775555 777654
Q ss_pred CCCCcH----HHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcc
Q 036436 82 SPADFP----ALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (485)
Q Consensus 82 ~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~ 157 (485)
.+.++. ..+....+...+.+.+++++. +|||||+|+ .+|+..+| +++|||++.|++++++.++.+++ +.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~----~~~~iV~D~-~~w~~~vA-~~~gIP~~~f~~~~a~~~~~~~~-~~ 149 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRDQVEVVVRAV----EPDLIFFDF-AHWIPEVA-RDFGLKTVKYVVVSASTIASMLV-PG 149 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHhC----CCCEEEECC-chhHHHHH-HHhCCCEEEEEcHHHHHHHHHhc-cc
Confidence 432222 234444445566677777665 789999996 89999999 99999999999999988877653 21
Q ss_pred cccccCccccccCcccccCCCCCC----CCcccCCCccc-CCC--chhHHHHH-HHHhhhcccceEEEcCchhhHHHHHH
Q 036436 158 LHKNTTKSFRELGSALLNFPGFPP----FPARDMALPMH-DRE--GKVYKGLV-DTGIQMAKSAGIIVNTFELLQERAIK 229 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (485)
.. . ...+||+|. ++..+++.+.. ... ......+. +..+....++++++|||.+||+.+++
T Consensus 150 --~~----~------~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~ 217 (453)
T PLN02764 150 --GE----L------GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCD 217 (453)
T ss_pred --cc----C------CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHH
Confidence 00 0 012366652 55555554311 111 11122232 33355677889999999999999999
Q ss_pred HHHhcccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeE
Q 036436 230 AMLEGQCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKF 309 (485)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~ 309 (485)
++.... + ++++.|||++....... ..+++|.+|||+++++++|||||||+..++.+++.+++.+|+.++.+|
T Consensus 218 ~~~~~~---~---~~v~~VGPL~~~~~~~~--~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pf 289 (453)
T PLN02764 218 YIEKHC---R---KKVLLTGPVFPEPDKTR--ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPF 289 (453)
T ss_pred HHHhhc---C---CcEEEeccCccCccccc--cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCe
Confidence 886531 1 57999999975331111 235689999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc
Q 036436 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (485)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 389 (485)
+|+++.+... + ...+.+|++|++|++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 290 lwv~r~~~~~----~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~ 364 (453)
T PLN02764 290 LVAVKPPRGS----S-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL 364 (453)
T ss_pred EEEEeCCCCC----c-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 9999853211 0 1134699999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE--KGRAVKERAVAMKEAAAAAMRDGGSSRVALDN 467 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (485)
.||+.||+++++.+|+|+.+...+ .+.++.++|+++|+++|+++ +++.+|++++++++.++ ++|||++++++
T Consensus 365 ~DQ~~na~~l~~~~g~gv~~~~~~--~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 365 GDQVLNTRLLSDELKVSVEVAREE--TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred cchHHHHHHHHHHhceEEEecccc--CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 999999999977789999986431 12389999999999999874 47889999999999985 57999999999
Q ss_pred HHHHHHhC
Q 036436 468 LVESFKRG 475 (485)
Q Consensus 468 l~~~~~~~ 475 (485)
|++.+.++
T Consensus 439 lv~~~~~~ 446 (453)
T PLN02764 439 FIESLQDL 446 (453)
T ss_pred HHHHHHHh
Confidence 99999876
No 19
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.8e-64 Score=504.08 Aligned_cols=442 Identities=24% Similarity=0.419 Sum_probs=333.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhcc-CCCCCeEEEEcCCCCCC-CCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVS-ATAPSVTFHQLPPPVSR-IPDTL 80 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~-l~~~~ 80 (485)
.||+++|+|++||++|++.||+.|+.|| +.|||+++...... +.+.. ...++++++.+|.++.+ +|.+.
T Consensus 7 ~HVvl~P~paqGHi~P~l~LAk~La~~G--~~vT~v~t~~n~~~-------~~~~~~~~~~~i~~~~lp~p~~dglp~~~ 77 (472)
T PLN02670 7 LHVAMFPWLAMGHLIPFLRLSKLLAQKG--HKISFISTPRNLHR-------LPKIPSQLSSSITLVSFPLPSVPGLPSSA 77 (472)
T ss_pred cEEEEeCChhhhHHHHHHHHHHHHHhCC--CEEEEEeCCchHHh-------hhhccccCCCCeeEEECCCCccCCCCCCc
Confidence 5999999999999999999999999999 99999976543211 11110 11246999999965321 77654
Q ss_pred CCCCCcH----HHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhc
Q 036436 81 RSPADFP----ALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLP 156 (485)
Q Consensus 81 ~~~~~~~----~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p 156 (485)
+...+.. ..+....+...+.+++++++. +++|||+|.+.+|+..+| +++|||++.|++++++..+.+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~cvI~D~f~~wa~~vA-~~~gIP~~~f~~~~a~~~~~~~~~~ 152 (472)
T PLN02670 78 ESSTDVPYTKQQLLKKAFDLLEPPLTTFLETS----KPDWIIYDYASHWLPSIA-AELGISKAFFSLFTAATLSFIGPPS 152 (472)
T ss_pred ccccccchhhHHHHHHHHHHhHHHHHHHHHhC----CCcEEEECCcchhHHHHH-HHcCCCEEEEehhhHHHHHHHhhhH
Confidence 4433332 123344444556666666554 899999999999999999 9999999999999998887765443
Q ss_pred ccccccCccccccCcccccCCCCCC------CCcccCCCcccCC--CchhHHHHHHHHhhhcccceEEEcCchhhHHHHH
Q 036436 157 TLHKNTTKSFRELGSALLNFPGFPP------FPARDMALPMHDR--EGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAI 228 (485)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (485)
.....+...... .....+|+.+| +...+++.++... .......+.+......+++++++|||.+||+.++
T Consensus 153 ~~~~~~~~~~~~--~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 153 SLMEGGDLRSTA--EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred hhhhcccCCCcc--ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 222221111111 11112444322 3445666544321 1123344455555667889999999999999999
Q ss_pred HHHHhcccCCCCCCCCeeeeCCccCC-CCCCCCC----CCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHH
Q 036436 229 KAMLEGQCIPGETLPPLYCIGPVVGR-GNGENRG----RDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLE 303 (485)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~vGpl~~~-~~~~~~~----~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~ 303 (485)
+++.... + ++++.|||+... ....... +.+++|.+|||+++++++|||||||+..++.+++.+++.+|+
T Consensus 231 ~~l~~~~---~---~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~ 304 (472)
T PLN02670 231 DLLSDLY---R---KPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLE 304 (472)
T ss_pred HHHHHhh---C---CCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 9987632 1 579999999753 1111000 112579999999988999999999999999999999999999
Q ss_pred hCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcE
Q 036436 304 RSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPM 383 (485)
Q Consensus 304 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~ 383 (485)
.++.+|||+++.+... ..+....+|++|.++++.+++++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 305 ~s~~~FlWv~r~~~~~----~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~ 380 (472)
T PLN02670 305 KSETPFFWVLRNEPGT----TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVL 380 (472)
T ss_pred HCCCCEEEEEcCCccc----ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCE
Confidence 9999999999863111 011224689999999999999999999999999999999999999999999999999999
Q ss_pred EecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 036436 384 LAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRV 463 (485)
Q Consensus 384 v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 463 (485)
|++|+++||+.||++++ ++|+|+.+...+ +++.++.++|+++|+++|.|++|+.||+||+++++.++. .+...+
T Consensus 381 l~~P~~~DQ~~Na~~v~-~~g~Gv~l~~~~-~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~ 454 (472)
T PLN02670 381 ILFPVLNEQGLNTRLLH-GKKLGLEVPRDE-RDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNR 454 (472)
T ss_pred EeCcchhccHHHHHHHH-HcCeeEEeeccc-cCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHH
Confidence 99999999999999995 679999997532 124589999999999999888788899999999999984 355569
Q ss_pred HHHHHHHHHHhCC
Q 036436 464 ALDNLVESFKRGR 476 (485)
Q Consensus 464 ~~~~l~~~~~~~~ 476 (485)
++++|++.+.+++
T Consensus 455 ~~~~~~~~l~~~~ 467 (472)
T PLN02670 455 YVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999886
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6e-64 Score=509.81 Aligned_cols=453 Identities=33% Similarity=0.634 Sum_probs=336.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeE---EEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFS---IDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDT 79 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~---Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 79 (485)
.||+++|+|++||++|++.||+.|+.+| .. ||++++....+. ..+..+.......++++|+.+|+... +.+
T Consensus 4 ~hVv~~PfpaqGHi~P~l~LAk~La~~G--~~~t~vt~~~t~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~--p~~ 77 (475)
T PLN02167 4 AELIFVPFPSTGHILVTIEFAKRLINLD--RRIHTITILYWSLPFAP--QADAFLKSLIASEPRIRLVTLPEVQD--PPP 77 (475)
T ss_pred cEEEEeCChhhhhHHHHHHHHHHHHhCC--CCeEEEEEEECCCCcch--hhhHHHhhcccCCCCeEEEECCCCCC--Ccc
Confidence 4999999999999999999999999998 54 455544332211 01112222212234799999997532 211
Q ss_pred CCC-CCCcHHHHHHHHHhhchhHHHHHHHhhcc-----C-CccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHH
Q 036436 80 LRS-PADFPALVYELGELNNPNLHETLITISKR-----S-NLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAAN 152 (485)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~-~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~ 152 (485)
.+. .......+..+...+.+.+++.++++..+ . +++|||+|.+++|+..+| +++|||++.|++++++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA-~elgIP~v~F~t~~A~~~~~~ 156 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVG-NEFNLPSYIFLTCNAGFLGMM 156 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHH-HHhCCCEEEEECccHHHHHHH
Confidence 110 11122345555556666777777765421 1 459999999999999999 999999999999999988888
Q ss_pred hhhcccccccCcccccc-CcccccCCCC-CCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHH
Q 036436 153 LYLPTLHKNTTKSFREL-GSALLNFPGF-PPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKA 230 (485)
Q Consensus 153 ~~~p~~~~~~~~~~~~~-~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (485)
+++|.........+... .+.+..+||+ ++++..+++..+.... .+..+........+++++++|||.+||+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 157 KYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred HHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 77765322111011010 1123458998 4688888876543321 234444555667788999999999999999988
Q ss_pred HHhcccCCCCCCCCeeeeCCccCCCCCC--CCC-CCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCC
Q 036436 231 MLEGQCIPGETLPPLYCIGPVVGRGNGE--NRG-RDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGV 307 (485)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vGpl~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~ 307 (485)
+.... ..+|++++|||+....... ..+ ..+.+|.+||++++++++|||||||+...+.+++.+++.+|+.++.
T Consensus 235 l~~~~----~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~ 310 (475)
T PLN02167 235 FSRLP----ENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGC 310 (475)
T ss_pred HHhhc----ccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 86531 1126899999997632210 000 1236799999999889999999999998999999999999999999
Q ss_pred eEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecc
Q 036436 308 KFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP 387 (485)
Q Consensus 308 ~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P 387 (485)
+|||+++.+... .......+|++|.+|++.++++ .+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 311 ~flw~~~~~~~~----~~~~~~~lp~~~~er~~~rg~v-~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 311 RFLWSIRTNPAE----YASPYEPLPEGFMDRVMGRGLV-CGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred cEEEEEecCccc----ccchhhhCChHHHHHhccCeee-eccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 999999863110 0011235899999999877754 49999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhhceEEEEeccC--CCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 036436 388 LYAEQKMIKAVVVEEMKVGLAVTRSE--EGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVAL 465 (485)
Q Consensus 388 ~~~DQ~~na~~v~~~~G~G~~l~~~~--~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 465 (485)
+++||+.||+++.+.+|+|+.+.... ++.+.+++++|+++|+++|.+++ .||+||+++++.+++++.+||||++++
T Consensus 386 ~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 386 MYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred ccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999987557899999996531 01123799999999999997652 499999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 036436 466 DNLVESFKRG 475 (485)
Q Consensus 466 ~~l~~~~~~~ 475 (485)
++|++++..-
T Consensus 464 ~~~v~~i~~~ 473 (475)
T PLN02167 464 KRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.3e-64 Score=510.26 Aligned_cols=450 Identities=29% Similarity=0.493 Sum_probs=325.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCC----CeEEEEcCCC-CCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAP----SVTFHQLPPP-VSRI 76 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~f~~~~~~-~~~l 76 (485)
+.||+++|+|++||++|++.||+.|++|| ++|||+++...... ++..........+ .+.+..+|.. ++ +
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG--~~VT~vtt~~~~~~---i~~~~a~~~~~~~~~~~~~~~~~~p~~~~g-l 78 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRG--AKSTILTTPLNAKI---FEKPIEAFKNLNPGLEIDIQIFNFPCVELG-L 78 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCC--CEEEEEECCCchhh---hhhhhhhhcccCCCCcceEEEeeCCCCcCC-C
Confidence 35999999999999999999999999999 99999987654321 1222211111111 3344444432 23 6
Q ss_pred CCCCCCCC--------CcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHh
Q 036436 77 PDTLRSPA--------DFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 77 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
|.+.+... .....+..+. .....+.+.++++.++.+|||||+|.+++|+..+| +++|||+++|++++++.
T Consensus 79 P~g~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA-~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 79 PEGCENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAA-EKFGVPRLVFHGTGYFS 156 (482)
T ss_pred CCCcccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHH-HHhCCCeEEeecccHHH
Confidence 65543321 1111122222 22334444444444434899999999999999999 99999999999999887
Q ss_pred HhHHhhhcccccccCccccccCcccccCCCCCC---CCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHH
Q 036436 149 LAANLYLPTLHKNTTKSFRELGSALLNFPGFPP---FPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQE 225 (485)
Q Consensus 149 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 225 (485)
.+..+.+.........+ . ......+|++|. +...+++.. .....+...+........+.+++++||+.++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~--~-~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~ 231 (482)
T PLN03007 157 LCASYCIRVHKPQKKVA--S-SSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELES 231 (482)
T ss_pred HHHHHHHHhcccccccC--C-CCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHH
Confidence 76554332111000000 0 011223677752 333344321 112223333334445667788999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCeeeeCCccCCCCC-------C-CCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHH
Q 036436 226 RAIKAMLEGQCIPGETLPPLYCIGPVVGRGNG-------E-NRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKE 297 (485)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~-------~-~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~ 297 (485)
.++..+.+.. . .++++|||+...... . ..+..+.+|.+||+.++++++|||||||+...+.+++.+
T Consensus 232 ~~~~~~~~~~---~---~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 305 (482)
T PLN03007 232 AYADFYKSFV---A---KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFE 305 (482)
T ss_pred HHHHHHHhcc---C---CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHH
Confidence 9888876543 1 479999997642211 0 011234679999999988999999999999888999999
Q ss_pred HHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhh
Q 036436 298 MAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGV 377 (485)
Q Consensus 298 i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal 377 (485)
++.+|+.++.+|||+++.+... ......+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+
T Consensus 306 ~~~~l~~~~~~flw~~~~~~~~-----~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal 380 (482)
T PLN03007 306 IAAGLEGSGQNFIWVVRKNENQ-----GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGV 380 (482)
T ss_pred HHHHHHHCCCCEEEEEecCCcc-----cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHH
Confidence 9999999999999999864110 01123589999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEecccccchhHHHHHHHHhhceEEEEeccCC---CCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 036436 378 CAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE---GDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAA 454 (485)
Q Consensus 378 ~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~---~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~ 454 (485)
++|||||++|+++||+.||+++++.+++|+.+...+. +.+.+++++|+++|+++|.|++++.||+||+++++.++++
T Consensus 381 ~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a 460 (482)
T PLN03007 381 AAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAA 460 (482)
T ss_pred HcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876777777632100 0123899999999999999887888999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHHHhC
Q 036436 455 MRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 455 ~~~~g~~~~~~~~l~~~~~~~ 475 (485)
+.+||||++++++|++.+.+.
T Consensus 461 ~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 461 VEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HhCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999998753
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.5e-45 Score=373.89 Aligned_cols=396 Identities=16% Similarity=0.213 Sum_probs=260.1
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 4 TIVLY-TSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 4 ~il~~-~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
+|+.+ |.++.+|..-+.+|+++|++|| |+||++++....... .. ...+++...++.....+......
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rG--H~VTvi~p~~~~~~~--------~~--~~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERG--HNVTVIKPTLRVYYA--------SH--LCGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcC--CeEEEEecccccccc--------cC--CCCCEEEEEcCCChHHHHHHHhh
Confidence 57655 7799999999999999999999 999999765321110 00 12355555554221100000000
Q ss_pred C---------CCcHH-------HHHHHHHh--hchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhc-CCceEEEec
Q 036436 83 P---------ADFPA-------LVYELGEL--NNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTL-SIPTYYYFT 143 (485)
Q Consensus 83 ~---------~~~~~-------~~~~~~~~--~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~l-gIP~v~~~~ 143 (485)
. .+... .+...++. ..+.+.++++. ++.++|+||+|.+..+++.+| +++ ++|.|.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~--~~~kFDlvi~e~~~~c~~~la-~~~~~~p~i~~ss 166 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN--KNNKFDLLVTEAFLDYPLVFS-HLFGDAPVIQISS 166 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc--CCCceeEEEecccchhHHHHH-HHhCCCCEEEEcC
Confidence 0 00000 01111211 23344455531 134899999999888888899 999 999888777
Q ss_pred chhHhHh-HHhh-hcccccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhH---------HH-------HHH-
Q 036436 144 TAGSVLA-ANLY-LPTLHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVY---------KG-------LVD- 204 (485)
Q Consensus 144 ~~~~~~~-~~~~-~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~---------~~-------~~~- 204 (485)
....... .... .|.. +..+|.+......++. +++|...+. .. ..+
T Consensus 167 ~~~~~~~~~~~gg~p~~--------------~syvP~~~~~~~~~Ms--f~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~ 230 (507)
T PHA03392 167 GYGLAENFETMGAVSRH--------------PVYYPNLWRSKFGNLN--VWETINEIYTELRLYNEFSLLADEQNKLLKQ 230 (507)
T ss_pred CCCchhHHHhhccCCCC--------------CeeeCCcccCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5443221 1111 1110 1112221111001111 222211110 00 000
Q ss_pred H--------HhhhcccceEEEcCchhhHHHHHHHHHhcccCCCCC-CCCeeeeCCccCCCCCCCCCCCcccccccccCCC
Q 036436 205 T--------GIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPGET-LPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKP 275 (485)
Q Consensus 205 ~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~ 275 (485)
. .+.....+.+++|+.+.++. +++ .|++++|||+..+....+ +.++++.+|+++.+
T Consensus 231 ~f~~~~~~~~~l~~~~~l~lvns~~~~d~-------------~rp~~p~v~~vGgi~~~~~~~~--~l~~~l~~fl~~~~ 295 (507)
T PHA03392 231 QFGPDTPTIRELRNRVQLLFVNVHPVFDN-------------NRPVPPSVQYLGGLHLHKKPPQ--PLDDYLEEFLNNST 295 (507)
T ss_pred HcCCCCCCHHHHHhCCcEEEEecCccccC-------------CCCCCCCeeeecccccCCCCCC--CCCHHHHHHHhcCC
Confidence 0 01112223455566555554 334 379999999987542222 67889999999864
Q ss_pred CCcEEEEecCCCc---cCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccch
Q 036436 276 SRSVLFLCFGSLG---SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQ 352 (485)
Q Consensus 276 ~~~~V~vs~GS~~---~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~ 352 (485)
+++|||||||+. ..+.+.++.+++|++..+.+|||++++.. ....+ ++|+.+.+|+||
T Consensus 296 -~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~---------~~~~~---------p~Nv~i~~w~Pq 356 (507)
T PHA03392 296 -NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV---------EAINL---------PANVLTQKWFPQ 356 (507)
T ss_pred -CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc---------CcccC---------CCceEEecCCCH
Confidence 469999999986 35678899999999999999999997531 00122 359999999999
Q ss_pred HHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 353 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
.+||+|+++++||||||+||++||+++|||||++|+++||+.||+|++ ++|+|+.++..+ ++.++|.++|++++
T Consensus 357 ~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~-~~G~G~~l~~~~-----~t~~~l~~ai~~vl 430 (507)
T PHA03392 357 RAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYV-ELGIGRALDTVT-----VSAAQLVLAIVDVI 430 (507)
T ss_pred HHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHH-HcCcEEEeccCC-----cCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999996 669999999988 99999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 433 DSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 433 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
+|++ |++||+++++.++.. .-...++++.-++.-+++.
T Consensus 431 ~~~~---y~~~a~~ls~~~~~~--p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 431 ENPK---YRKNLKELRHLIRHQ--PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred CCHH---HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCC
Confidence 9998 999999999999842 2234557777666555544
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=9.9e-46 Score=384.04 Aligned_cols=383 Identities=20% Similarity=0.315 Sum_probs=219.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSP 83 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 83 (485)
||+++|+ +.+|+.++..|+++|++|| |+||++++..... +.. .....+++..++.... ..+....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rG--H~VTvl~~~~~~~--------~~~--~~~~~~~~~~~~~~~~--~~~~~~~ 66 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERG--HNVTVLTPSPSSS--------LNP--SKPSNIRFETYPDPYP--EEEFEEI 66 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH---TTSEEEHHHHHHT----------------S-CCEEEE-------TT-----
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcC--CceEEEEeecccc--------ccc--ccccceeeEEEcCCcc--hHHHhhh
Confidence 5778875 7899999999999999999 9999997643110 000 1223455655554311 0111110
Q ss_pred -CCcHH----------HHHHHHHh-------h---------chhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCC
Q 036436 84 -ADFPA----------LVYELGEL-------N---------NPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSI 136 (485)
Q Consensus 84 -~~~~~----------~~~~~~~~-------~---------~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgI 136 (485)
.+... .+...+.. . ...+.+.+++ .++|++|+|.+..|+..+| +.++|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~----~~fDlvI~d~f~~c~~~la-~~l~i 141 (500)
T PF00201_consen 67 FPEFISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS----EKFDLVISDAFDPCGLALA-HYLGI 141 (500)
T ss_dssp -TTHHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH----HHHCT-EEEEEESSHHHHH-HHHHH
T ss_pred hHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----hccccceEeeccchhHHHH-HHhcC
Confidence 11110 11111110 0 1122222333 3799999999888888899 99999
Q ss_pred ceEEEecchhHhHhHHhhhcccccccCccccccCcccccCCCCCCCCcccCCCc--ccCCC-chhHHHHHHH-Hhhhcc-
Q 036436 137 PTYYYFTTAGSVLAANLYLPTLHKNTTKSFRELGSALLNFPGFPPFPARDMALP--MHDRE-GKVYKGLVDT-GIQMAK- 211 (485)
Q Consensus 137 P~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~~-~~~~~~~~~~-~~~~~~- 211 (485)
|.+.+.+........ .. .......|++.|.....++.. +++|. +.+....... ......
T Consensus 142 P~i~~~s~~~~~~~~--------~~--------~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~ 205 (500)
T PF00201_consen 142 PVIIISSSTPMYDLS--------SF--------SGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP 205 (500)
T ss_dssp THHHHHHCCSCSCCT--------CC--------TSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS
T ss_pred CeEEEecccccchhh--------hh--------ccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh
Confidence 998654322211000 00 001112233333322333222 33333 2222211111 111110
Q ss_pred --cceEEEcC----chhhHHHHHHHHHhcccCCC--CC-CCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEE
Q 036436 212 --SAGIIVNT----FELLQERAIKAMLEGQCIPG--ET-LPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFL 282 (485)
Q Consensus 212 --~~~~~~~~----~~~l~~~~~~~~~~~~~~~~--~~-~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~v 282 (485)
....-... ..++......++.+..+..+ ++ .|++++||++..++.. +.+.++..|++...++++|||
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~----~l~~~~~~~~~~~~~~~vv~v 281 (500)
T PF00201_consen 206 QDKLYKKYFGFPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAK----PLPEELWNFLDSSGKKGVVYV 281 (500)
T ss_dssp -TTS-EEESS-GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S--------TCHHHHHHHTSTTTTTEEEEE
T ss_pred HHHHHhhhcccccccHHHHHHHHHHhhhccccCcCCcchhhcccccCcccccccc----ccccccchhhhccCCCCEEEE
Confidence 01111111 11222222222222221111 22 3799999999776554 678889999998556779999
Q ss_pred ecCCCccCCHHh-HHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCc
Q 036436 283 CFGSLGSFSSKQ-LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESV 361 (485)
Q Consensus 283 s~GS~~~~~~~~-~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~ 361 (485)
||||+....++. .+++++++++++.+|||++++. ....+| +|+++.+|+||.+||+|+++
T Consensus 282 sfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~----------~~~~l~---------~n~~~~~W~PQ~~lL~hp~v 342 (500)
T PF00201_consen 282 SFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE----------PPENLP---------KNVLIVKWLPQNDLLAHPRV 342 (500)
T ss_dssp E-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS----------HGCHHH---------TTEEEESS--HHHHHTSTTE
T ss_pred ecCcccchhHHHHHHHHHHHHhhCCCccccccccc----------cccccc---------ceEEEeccccchhhhhcccc
Confidence 999987544554 8889999999999999999663 111222 48899999999999999999
Q ss_pred ceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHH
Q 036436 362 GGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVK 441 (485)
Q Consensus 362 ~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~ 441 (485)
++||||||+||++||+++|||||++|+++||+.||++++ +.|+|+.++... +|.++|.++|+++|+|++ |+
T Consensus 343 ~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~-~~G~g~~l~~~~-----~~~~~l~~ai~~vl~~~~---y~ 413 (500)
T PF00201_consen 343 KLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVE-EKGVGVVLDKND-----LTEEELRAAIREVLENPS---YK 413 (500)
T ss_dssp EEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHH-HTTSEEEEGGGC------SHHHHHHHHHHHHHSHH---HH
T ss_pred eeeeeccccchhhhhhhccCCccCCCCcccCCccceEEE-EEeeEEEEEecC-----CcHHHHHHHHHHHHhhhH---HH
Confidence 999999999999999999999999999999999999996 559999999988 999999999999999998 99
Q ss_pred HHHHHHHHHHHHH
Q 036436 442 ERAVAMKEAAAAA 454 (485)
Q Consensus 442 ~~a~~l~~~~~~~ 454 (485)
+||+++++.++..
T Consensus 414 ~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 414 ENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHHTTT--
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999843
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.6e-42 Score=346.37 Aligned_cols=383 Identities=19% Similarity=0.266 Sum_probs=242.4
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC--CC
Q 036436 8 YTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSP--AD 85 (485)
Q Consensus 8 ~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~--~~ 85 (485)
+++|+.||++|+++||++|++|| |+|+|++++.. ...++.. |+.|..++.... .+...+.. .+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~G--h~V~~~~~~~~-------~~~v~~~-----G~~~~~~~~~~~-~~~~~~~~~~~~ 65 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARG--HRVTYATTEEF-------AERVEAA-----GAEFVLYGSALP-PPDNPPENTEEE 65 (392)
T ss_pred CCCCccccccccHHHHHHHHhCC--CeEEEEeCHHH-------HHHHHHc-----CCEEEecCCcCc-cccccccccCcc
Confidence 46899999999999999999999 99999988643 3344443 788888876422 11111100 12
Q ss_pred cHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccccccCcc
Q 036436 86 FPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKS 165 (485)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 165 (485)
....+..+.......+..+ .+..++.+||+||+|.+++++..+| +++|||+|.+++.+..... .+... .+
T Consensus 66 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~pDlVi~d~~~~~~~~~A-~~~giP~v~~~~~~~~~~~----~~~~~----~~ 135 (392)
T TIGR01426 66 PIDIIEKLLDEAEDVLPQL-EEAYKGDRPDLIVYDIASWTGRLLA-RKWDVPVISSFPTFAANEE----FEEMV----SP 135 (392)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhcCCCCCEEEECCccHHHHHHH-HHhCCCEEEEehhhccccc----ccccc----cc
Confidence 2222222222222222222 2222334899999999888998999 9999999988654321100 00000 00
Q ss_pred ccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHH----HHHHHHhcccCCCCC
Q 036436 166 FRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQER----AIKAMLEGQCIPGET 241 (485)
Q Consensus 166 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~ 241 (485)
+. +.+.. ....... ..+.+... ....++..++-......+... .+......+..+...
T Consensus 136 ~~---------~~~~~--~~~~~~~---~~~~~~~~----~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 197 (392)
T TIGR01426 136 AG---------EGSAE--EGAIAER---GLAEYVAR----LSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGET 197 (392)
T ss_pred cc---------hhhhh--hhccccc---hhHHHHHH----HHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccc
Confidence 00 00000 0000000 00111111 111111111000000000000 000001111111222
Q ss_pred C-CCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 036436 242 L-PPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDS 320 (485)
Q Consensus 242 ~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~ 320 (485)
+ ++++++||+...... ...|+....++++||||+||+.......+..+++++...+.++||.++....
T Consensus 198 ~~~~~~~~Gp~~~~~~~---------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-- 266 (392)
T TIGR01426 198 FDDSFTFVGPCIGDRKE---------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-- 266 (392)
T ss_pred cCCCeEEECCCCCCccc---------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC--
Confidence 3 589999998764321 2236666666789999999987666778889999999999999998865310
Q ss_pred ccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHH
Q 036436 321 VENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVV 400 (485)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 400 (485)
.+.+.+ .++|+.+.+|+|+.++|+++++ +|||||+||++|||++|+|+|++|...||+.||++++
T Consensus 267 -----------~~~~~~--~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~ 331 (392)
T TIGR01426 267 -----------PADLGE--LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIA 331 (392)
T ss_pred -----------hhHhcc--CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHH
Confidence 011110 2358889999999999999998 9999999999999999999999999999999999995
Q ss_pred HhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 036436 401 EEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (485)
Q Consensus 401 ~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (485)
++|+|+.+...+ +++++|.++|.++++|++ |+++++++++.+.+. +|. .++++.+++.+
T Consensus 332 -~~g~g~~l~~~~-----~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~~---~~~-~~aa~~i~~~~ 390 (392)
T TIGR01426 332 -ELGLGRHLPPEE-----VTAEKLREAVLAVLSDPR---YAERLRKMRAEIREA---GGA-RRAADEIEGFL 390 (392)
T ss_pred -HCCCEEEecccc-----CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHc---CCH-HHHHHHHHHhh
Confidence 679999998877 999999999999999988 999999999999843 444 46666665543
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.8e-41 Score=342.81 Aligned_cols=386 Identities=15% Similarity=0.154 Sum_probs=238.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
+||+|+++|+.||++|+++||++|++|| |+|+|+++.... ..++. .|++|..++........+...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG--h~V~~~t~~~~~-------~~v~~-----~G~~~~~~~~~~~~~~~~~~~ 66 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG--HEVRVATPPEFA-------DLVEA-----AGLEFVPVGGDPDELLASPER 66 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC--CeEEEeeCHhHH-------HHHHH-----cCCceeeCCCCHHHHHhhhhh
Confidence 3799999999999999999999999999 999999877432 23333 378888887642200000000
Q ss_pred --------CCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhh
Q 036436 83 --------PADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLY 154 (485)
Q Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~ 154 (485)
.......+..+.......+.++++. .++.+||+||+|.+.+++..+| +++|||++.+++++....+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pDlvi~d~~~~~~~~~A-~~~giP~v~~~~~~~~~~~~~~- 143 (401)
T cd03784 67 NAGLLLLGPGLLLGALRLLRREAEAMLDDLVAA-ARDWGPDLVVADPLAFAGAVAA-EALGIPAVRLLLGPDTPTSAFP- 143 (401)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCEEEeCcHHHHHHHHH-HHhCCCeEEeecccCCccccCC-
Confidence 0011111112222222233333322 1234999999999888888899 9999999999887643321100
Q ss_pred hcccccccCccccccCcccccCCCCCCCCc-ccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCc-hhhHHHHHHHHH
Q 036436 155 LPTLHKNTTKSFRELGSALLNFPGFPPFPA-RDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTF-ELLQERAIKAML 232 (485)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 232 (485)
+++.. ......... ...+...........++..++-.... .......+..+.
T Consensus 144 -------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 197 (401)
T cd03784 144 -------------------------PPLGRANLRLYALLE-AELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS 197 (401)
T ss_pred -------------------------CccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecC
Confidence 00000 000000000 00000111111111111111100000 000000000111
Q ss_pred hcccCCCCCC-CCeeeeC-CccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCH-HhHHHHHHHHHhCCCeE
Q 036436 233 EGQCIPGETL-PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSS-KQLKEMAIGLERSGVKF 309 (485)
Q Consensus 233 ~~~~~~~~~~-~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~i~~al~~~~~~~ 309 (485)
..+..+..++ ++..++| ++....... ..+.++..|++.. +++||||+||+..... ..+..++++++..+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 198 PAVLPPPPDWPRFDLVTGYGFRDVPYNG---PPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred cccCCCCCCccccCcEeCCCCCCCCCCC---CCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 1111112222 3566776 443322221 3456677888764 4599999999986444 56778999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc
Q 036436 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (485)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 389 (485)
||+++..... . ...++|+.+.+|+||.++|+++++ ||||||+||++|+|++|||+|++|+.
T Consensus 273 i~~~g~~~~~--------~---------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~ 333 (401)
T cd03784 273 ILSLGWGGLG--------A---------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFF 333 (401)
T ss_pred EEEccCcccc--------c---------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCC
Confidence 9998764100 0 112458999999999999999999 99999999999999999999999999
Q ss_pred cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLV 469 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (485)
.||+.||++++ ++|+|+.++..+ +++++|.++++++++++ ++++++++++.+++ ++|. .++++.+.
T Consensus 334 ~dQ~~~a~~~~-~~G~g~~l~~~~-----~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~---~~g~-~~~~~~ie 399 (401)
T cd03784 334 GDQPFWAARVA-ELGAGPALDPRE-----LTAERLAAALRRLLDPP----SRRRAAALLRRIRE---EDGV-PSAADVIE 399 (401)
T ss_pred CCcHHHHHHHH-HCCCCCCCCccc-----CCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh---ccCH-HHHHHHHh
Confidence 99999999995 679999999887 89999999999999854 66777777777753 2444 35555443
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-39 Score=319.48 Aligned_cols=387 Identities=20% Similarity=0.250 Sum_probs=242.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
+||+++..|+.||++|+++||++|.++| |+|+|+|+. .+...++.. |+.|..++..+. .......
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~g--heV~~~~~~-------~~~~~ve~a-----g~~f~~~~~~~~-~~~~~~~ 66 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRG--HEVVFASTG-------KFKEFVEAA-----GLAFVAYPIRDS-ELATEDG 66 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcC--CeEEEEeCH-------HHHHHHHHh-----CcceeeccccCC-hhhhhhh
Confidence 6899999999999999999999999999 999999877 444455554 667777765412 1111111
Q ss_pred CCCcHHHHH---HHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHh-hhccc
Q 036436 83 PADFPALVY---ELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANL-YLPTL 158 (485)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~-~~p~~ 158 (485)
.......+. ........++.+++.+. .+|+++.|...+.+ .++ +..++|++....+......... +.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (406)
T COG1819 67 KFAGVKSFRRLLQQFKKLIRELLELLREL----EPDLVVDDARLSLG-LAA-RLLGIPVVGINVAPYTPLPAAGLPLPPV 140 (406)
T ss_pred hhhccchhHHHhhhhhhhhHHHHHHHHhc----chhhhhcchhhhhh-hhh-hhcccchhhhhhhhccCCcccccCcccc
Confidence 111111111 11112333444556666 89999999744444 777 9999999987766554322211 11111
Q ss_pred ccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEc-------CchhhHHHHHHHH
Q 036436 159 HKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVN-------TFELLQERAIKAM 231 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~ 231 (485)
... ....++..+ +......+....+. +... .............+ +-+.+.. . .
T Consensus 141 ~~~----------~~~~~~~~~-~~~~~~~~~~~~~~--~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 200 (406)
T COG1819 141 GIA----------GKLPIPLYP-LPPRLVRPLIFARS--WLPK---LVVRRNLGLELGLPNIRRLFASGPLLEI---A-Y 200 (406)
T ss_pred ccc----------ccccccccc-cChhhccccccchh--hhhh---hhhhhhccccccccchHHHhcCCCCccc---c-c
Confidence 000 000011000 00000000000000 0000 00000000001011 1111111 0 1
Q ss_pred HhcccCCCCCCC-CeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEE
Q 036436 232 LEGQCIPGETLP-PLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFL 310 (485)
Q Consensus 232 ~~~~~~~~~~~~-~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i 310 (485)
.+..+.|++..| ...++||+...... +...|... ++++||||+||.... .++++.+++++..++.++|
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~~~~~~~~--------~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi 269 (406)
T COG1819 201 TDVLFPPGDRLPFIGPYIGPLLGEAAN--------ELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVI 269 (406)
T ss_pred cccccCCCCCCCCCcCccccccccccc--------cCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEE
Confidence 111122211223 56677777654332 23334333 455999999999966 8889999999999999999
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccccc
Q 036436 311 WVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (485)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 390 (485)
+.+++. . .....+| .|+.+.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...
T Consensus 270 ~~~~~~-~-------~~~~~~p---------~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~ 330 (406)
T COG1819 270 VSLGGA-R-------DTLVNVP---------DNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGA 330 (406)
T ss_pred Eecccc-c-------cccccCC---------CceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCc
Confidence 998662 0 1122344 48999999999999999999 999999999999999999999999999
Q ss_pred chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 036436 391 EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (485)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (485)
||+.||.+++ ++|+|+.+..++ ++.+.|+++|+++|+|+. |+++++++++.+++. +| .+++.+.|.+
T Consensus 331 DQ~~nA~rve-~~G~G~~l~~~~-----l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~~---~g-~~~~a~~le~ 397 (406)
T COG1819 331 DQPLNAERVE-ELGAGIALPFEE-----LTEERLRAAVNEVLADDS---YRRAAERLAEEFKEE---DG-PAKAADLLEE 397 (406)
T ss_pred chhHHHHHHH-HcCCceecCccc-----CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhhc---cc-HHHHHHHHHH
Confidence 9999999995 779999999988 999999999999999998 999999999999954 55 3244444444
Q ss_pred HHH
Q 036436 471 SFK 473 (485)
Q Consensus 471 ~~~ 473 (485)
...
T Consensus 398 ~~~ 400 (406)
T COG1819 398 FAR 400 (406)
T ss_pred HHh
Confidence 333
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=6.5e-40 Score=340.50 Aligned_cols=409 Identities=26% Similarity=0.441 Sum_probs=241.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccC---CCCCeEEEEcCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSA---TAPSVTFHQLPPPVSRIPDT 79 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~l~~~ 79 (485)
.|++++++|++||++|+..||+.|+++| |+||++++....... ... ...... ....+.+...+ +. ++..
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~g--h~vt~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~--~~-~~~~ 77 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERG--HNVTVVTPSFNALKL--SKS-SKSKSIKKINPPPFEFLTIP--DG-LPEG 77 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcC--CceEEEEeechhccc--CCc-ccceeeeeeecChHHhhhhh--hh-hccc
Confidence 4889999999999999999999999999 999999765433221 000 000000 00011111111 01 2222
Q ss_pred CCCCC-CcHHHHHHHHHhhchhHHHHHHHhhc--cCCccEEEEcCCcchhHHHHhhhc-CCceEEEecchhHhHhHHhhh
Q 036436 80 LRSPA-DFPALVYELGELNNPNLHETLITISK--RSNLKAFVIDFLCNPAFQVSSSTL-SIPTYYYFTTAGSVLAANLYL 155 (485)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~pD~VI~D~~~~~~~~vA~~~l-gIP~v~~~~~~~~~~~~~~~~ 155 (485)
..... ........+...+...+.+.+..+.. ..++|++|+|.+..|...+| ... +|+..++++..........+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~g~~~ 156 (496)
T KOG1192|consen 78 WEDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLA-IPSFVIPLLSFPTSSAVLLALGLPS 156 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhc-ccceEEEeecccCchHHHHhcCCcC
Confidence 11100 11111122222233333333332221 13499999999766777677 665 499998888877765543322
Q ss_pred cccccccCccccccCcccccCCCCC-CCCcccCCCcccCCCc-hhHHHHHH-HHhhh----cccceEEEcC-chhhHHHH
Q 036436 156 PTLHKNTTKSFRELGSALLNFPGFP-PFPARDMALPMHDREG-KVYKGLVD-TGIQM----AKSAGIIVNT-FELLQERA 227 (485)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~----~~~~~~~~~~-~~~l~~~~ 227 (485)
+...- .............+++.. ++....++........ ........ ..... .....++.++ +..++...
T Consensus 157 ~~~~~--p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~ 234 (496)
T KOG1192|consen 157 PLSYV--PSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNP 234 (496)
T ss_pred ccccc--CcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCc
Confidence 21100 000000000000000000 0000000000000000 00000000 00000 1111233333 44444422
Q ss_pred HHHHHhcccCCCCC-CCCeeeeCCccCCCCCCCCCCCcccccccccCCCCC--cEEEEecCCCc---cCCHHhHHHHHHH
Q 036436 228 IKAMLEGQCIPGET-LPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSR--SVLFLCFGSLG---SFSSKQLKEMAIG 301 (485)
Q Consensus 228 ~~~~~~~~~~~~~~-~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~--~~V~vs~GS~~---~~~~~~~~~i~~a 301 (485)
.. .++.++ .+++++|||+...... ...+.+.+|++..+.. ++|||||||+. .++.++.++++.+
T Consensus 235 ~~------~~~~~~~~~~v~~IG~l~~~~~~----~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~ 304 (496)
T KOG1192|consen 235 LL------DFEPRPLLPKVIPIGPLHVKDSK----QKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKA 304 (496)
T ss_pred cc------CCCCCCCCCCceEECcEEecCcc----ccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHH
Confidence 21 111222 4799999999887332 1112466777765554 79999999998 7999999999999
Q ss_pred HHhC-CCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHh-hhccCcceEEeccCchhhHHhhhc
Q 036436 302 LERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV-LNHESVGGFVTHCGWNSVLEGVCA 379 (485)
Q Consensus 302 l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~l-L~~~~~~~~I~HgG~gs~~eal~~ 379 (485)
++.+ +..|||+++... ...+++++.++ ...|++..+|+||.++ |+|++++|||||||||||+|++++
T Consensus 305 l~~~~~~~FiW~~~~~~----------~~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~ 373 (496)
T KOG1192|consen 305 LESLQGVTFLWKYRPDD----------SIYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYS 373 (496)
T ss_pred HHhCCCceEEEEecCCc----------chhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhc
Confidence 9999 889999998741 11133444433 3457888899999998 599999999999999999999999
Q ss_pred CCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 036436 380 GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAA 452 (485)
Q Consensus 380 GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 452 (485)
|||||++|+++||+.||++++++ |.|..+...+ ++.+.+.+++.+++.+++ |+++++++++.++
T Consensus 374 GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~-----~~~~~~~~~~~~il~~~~---y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 374 GVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRD-----LVSEELLEAIKEILENEE---YKEAAKRLSEILR 437 (496)
T ss_pred CCceecCCccccchhHHHHHHhC-CCEEEEehhh-----cCcHHHHHHHHHHHcChH---HHHHHHHHHHHHH
Confidence 99999999999999999999877 6555555555 566559999999999998 9999999999987
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=3e-26 Score=225.53 Aligned_cols=322 Identities=15% Similarity=0.132 Sum_probs=201.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
++|++.+.|+.||++|.++||++|.++| |+|+|++.....+.. .+. ..++.+..++.. . +. .
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g--~~v~~vg~~~~~e~~-----l~~-----~~g~~~~~~~~~-~-l~----~ 63 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDN--WDISYIGSHQGIEKT-----IIE-----KENIPYYSISSG-K-LR----R 63 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCC--CEEEEEECCCccccc-----cCc-----ccCCcEEEEecc-C-cC----C
Confidence 5899999999999999999999999999 999999755432211 111 125777766632 1 11 1
Q ss_pred CCCcHHHHHHHHHh--hchhHHHHHHHhhccCCccEEEEcCCcch--hHHHHhhhcCCceEEEecchhHhHhHHhhhccc
Q 036436 83 PADFPALVYELGEL--NNPNLHETLITISKRSNLKAFVIDFLCNP--AFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTL 158 (485)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~pD~VI~D~~~~~--~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~ 158 (485)
......+...... ..-....+++++ +||+||+...... +..+| +.+++|+++...
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~i~~~~----kPdvvi~~Ggy~s~p~~~aa-~~~~~p~~i~e~--------------- 122 (352)
T PRK12446 64 -YFDLKNIKDPFLVMKGVMDAYVRIRKL----KPDVIFSKGGFVSVPVVIGG-WLNRVPVLLHES--------------- 122 (352)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEecCchhhHHHHHHH-HHcCCCEEEECC---------------
Confidence 1112222222222 223344566777 9999998653332 45577 999999987432
Q ss_pred ccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccCC
Q 036436 159 HKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIP 238 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (485)
..+||+. .+.+.+....+..+|++-.. .++
T Consensus 123 ---------------n~~~g~~-------------------------nr~~~~~a~~v~~~f~~~~~----------~~~ 152 (352)
T PRK12446 123 ---------------DMTPGLA-------------------------NKIALRFASKIFVTFEEAAK----------HLP 152 (352)
T ss_pred ---------------CCCccHH-------------------------HHHHHHhhCEEEEEccchhh----------hCC
Confidence 1112110 11111111223344433211 011
Q ss_pred CCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHh-HHHHHHHHHhCCCeEEEEEeCCC
Q 036436 239 GETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQ-LKEMAIGLERSGVKFLWVVRAPA 317 (485)
Q Consensus 239 ~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~-~~~i~~al~~~~~~~i~~~~~~~ 317 (485)
. .+++++|+.+...-.. ...+...+.+.-.+++++|+|..||......+. +.+++..+.. +..++|+++...
T Consensus 153 ~---~k~~~tG~Pvr~~~~~---~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~ 225 (352)
T PRK12446 153 K---EKVIYTGSPVREEVLK---GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN 225 (352)
T ss_pred C---CCeEEECCcCCccccc---ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch
Confidence 1 4789999655443211 111122222222344669999999998544433 3334444422 478889887640
Q ss_pred CCCccccccccccCchhhHhhhcCCCeEeeccc-c-hHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc-----c
Q 036436 318 PDSVENRSSLESLLPEGFLDRTKDRGLVVESWA-P-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY-----A 390 (485)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~-p-~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~-----~ 390 (485)
+ +..... ..+..+.+|+ + ..++|+++++ +|||||.+|++|++++|+|+|++|+. .
T Consensus 226 -------------~-~~~~~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~ 287 (352)
T PRK12446 226 -------------L-DDSLQN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRG 287 (352)
T ss_pred -------------H-HHHHhh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCc
Confidence 0 000111 1244556887 4 5679999999 99999999999999999999999984 4
Q ss_pred chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 036436 391 EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVA 446 (485)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 446 (485)
||..||+.++ +.|+|..+...+ ++++.|.+++.++++|++ .+++++++
T Consensus 288 ~Q~~Na~~l~-~~g~~~~l~~~~-----~~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 288 DQILNAESFE-RQGYASVLYEED-----VTVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred hHHHHHHHHH-HCCCEEEcchhc-----CCHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 8999999996 569999999888 999999999999998764 15544433
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.2e-23 Score=204.65 Aligned_cols=324 Identities=15% Similarity=0.168 Sum_probs=204.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCe-EEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCF-SIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLR 81 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (485)
++|++...++.||+.|.++|+++|.++| + +|.+..+....+. ......++.++.++-... ...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g--~~~v~~~~~~~~~e~----------~l~~~~~~~~~~I~~~~~---~~~- 64 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRG--WEQVIVLGTGDGLEA----------FLVKQYGIEFELIPSGGL---RRK- 64 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhC--ccEEEEeccccccee----------eeccccCceEEEEecccc---ccc-
Confidence 3689999999999999999999999999 7 6777744433221 111233677777774311 111
Q ss_pred CCCCcHHHHHHHHH--hhchhHHHHHHHhhccCCccEEEEcC--CcchhHHHHhhhcCCceEEEecchhHhHhHHhhhcc
Q 036436 82 SPADFPALVYELGE--LNNPNLHETLITISKRSNLKAFVIDF--LCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (485)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~pD~VI~D~--~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~ 157 (485)
.....+...+. ........++++. +||+||.-. .+..+..+| ..+|||.++.-
T Consensus 65 ---~~~~~~~~~~~~~~~~~~a~~il~~~----kPd~vig~Ggyvs~P~~~Aa-~~~~iPv~ihE--------------- 121 (357)
T COG0707 65 ---GSLKLLKAPFKLLKGVLQARKILKKL----KPDVVIGTGGYVSGPVGIAA-KLLGIPVIIHE--------------- 121 (357)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHc----CCCEEEecCCccccHHHHHH-HhCCCCEEEEe---------------
Confidence 11112222222 2445677888888 999999843 333455566 99999998742
Q ss_pred cccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccC
Q 036436 158 LHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (485)
++.+||+.+ ....+....+..+|+..+. ..
T Consensus 122 ---------------qn~~~G~an-------------------------k~~~~~a~~V~~~f~~~~~----------~~ 151 (357)
T COG0707 122 ---------------QNAVPGLAN-------------------------KILSKFAKKVASAFPKLEA----------GV 151 (357)
T ss_pred ---------------cCCCcchhH-------------------------HHhHHhhceeeeccccccc----------cC
Confidence 233444321 1122222233344443221 00
Q ss_pred CCCCCCCeeeeC-CccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHh-HHHHHHHHHhCCCeEEEEEeC
Q 036436 238 PGETLPPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQ-LKEMAIGLERSGVKFLWVVRA 315 (485)
Q Consensus 238 ~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~-~~~i~~al~~~~~~~i~~~~~ 315 (485)
++ .+++++| |+...-.. .+..-..+ +...++++|+|..||......+. +..++..+.. +..+++.++.
T Consensus 152 ~~---~~~~~tG~Pvr~~~~~-----~~~~~~~~-~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~ 221 (357)
T COG0707 152 KP---ENVVVTGIPVRPEFEE-----LPAAEVRK-DGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGK 221 (357)
T ss_pred CC---CceEEecCcccHHhhc-----cchhhhhh-hccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCc
Confidence 11 3689999 66543221 01111111 11114569999999987433332 2223333333 4577777765
Q ss_pred CCCCCccccccccccCchhhHhhhcCCC-eEeecccch-HHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc----
Q 036436 316 PAPDSVENRSSLESLLPEGFLDRTKDRG-LVVESWAPQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY---- 389 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~~~n-~~v~~~~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~---- 389 (485)
. -.+.....+...| +.+..|.++ ..+|+.+|+ +||++|.+|+.|.+++|+|+|.+|+.
T Consensus 222 ~--------------~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~ 285 (357)
T COG0707 222 N--------------DLEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGAD 285 (357)
T ss_pred c--------------hHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCcc
Confidence 4 1133444444445 777788876 459999999 99999999999999999999999983
Q ss_pred cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAM 447 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l 447 (485)
.||..||+.++ +.|.|..++..+ +|.+.+.+.|.+++++++ .+.|+++++++
T Consensus 286 ~~Q~~NA~~l~-~~gaa~~i~~~~-----lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 286 GHQEYNAKFLE-KAGAALVIRQSE-----LTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred chHHHHHHHHH-hCCCEEEecccc-----CCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 38999999996 559999999999 999999999999998854 33444444444
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=8.3e-24 Score=207.03 Aligned_cols=302 Identities=14% Similarity=0.171 Sum_probs=186.7
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 4 TIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 4 ~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
||++... -|.||+.+.++||++| || |+|+|++.....+. +. +.+....++.... .. ...
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg--~~v~~~~~~~~~~~-------~~------~~~~~~~~~~~~~--~~-~~~ 61 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RG--HEVTFITSGPAPEF-------LK------PRFPVREIPGLGP--IQ-ENG 61 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--cc--CceEEEEcCCcHHH-------hc------cccCEEEccCceE--ec-cCC
Confidence 5666655 4999999999999999 69 99999987643221 11 1123444433211 11 111
Q ss_pred CCCcHHHHHHHH------HhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhc
Q 036436 83 PADFPALVYELG------ELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLP 156 (485)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p 156 (485)
..+....+.... ......+.+++++. +||+||+|. .+.+..+| +..|||++.+..........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~pDlVIsD~-~~~~~~aa-~~~giP~i~i~~~~~~~~~~----- 130 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLREF----RPDLVISDF-YPLAALAA-RRAGIPVIVISNQYWFLHPN----- 130 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCEEEEcC-hHHHHHHH-HhcCCCEEEEEehHHccccc-----
Confidence 122222222221 22333444555555 999999995 55567788 99999999987755432100
Q ss_pred ccccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHh--hhcccceEEEcCchhhHHHHHHHHHhc
Q 036436 157 TLHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGI--QMAKSAGIIVNTFELLQERAIKAMLEG 234 (485)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (485)
. .++ ....+.....+... ....+...+.-++. ..
T Consensus 131 ----------------------~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---------- 166 (318)
T PF13528_consen 131 ----------------------F------WLP-----WDQDFGRLIERYIDRYHFPPADRRLALSFY-PP---------- 166 (318)
T ss_pred ----------------------C------Ccc-----hhhhHHHHHHHhhhhccCCcccceecCCcc-cc----------
Confidence 0 000 00000011111111 12222333333332 10
Q ss_pred ccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCC-CeEEEEE
Q 036436 235 QCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSG-VKFLWVV 313 (485)
Q Consensus 235 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~-~~~i~~~ 313 (485)
.....++.++||+..+..... + . .+++.|+|++|+.... .++++++..+ ..+++.
T Consensus 167 ----~~~~~~~~~~~p~~~~~~~~~----~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~- 222 (318)
T PF13528_consen 167 ----LPPFFRVPFVGPIIRPEIREL----P-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF- 222 (318)
T ss_pred ----ccccccccccCchhccccccc----C-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-
Confidence 001135677888876544211 0 1 1334899999988632 6667777776 566555
Q ss_pred eCCCCCCccccccccccCchhhHhhhcCCCeEeeccc--chHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc--c
Q 036436 314 RAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWA--PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL--Y 389 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~--p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~--~ 389 (485)
+... ...+.+|+.+..|. ...++|+.+++ +|+|||+||++|++++|+|+|++|. .
T Consensus 223 g~~~-------------------~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~ 281 (318)
T PF13528_consen 223 GPNA-------------------ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQ 281 (318)
T ss_pred cCCc-------------------ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 4420 01124689898876 46779999999 9999999999999999999999999 7
Q ss_pred cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~v 431 (485)
.||..||++++ ++|+|+.++..+ ++++.|+++|+++
T Consensus 282 ~EQ~~~a~~l~-~~G~~~~~~~~~-----~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 282 DEQEYNARKLE-ELGLGIVLSQED-----LTPERLAEFLERL 317 (318)
T ss_pred chHHHHHHHHH-HCCCeEEccccc-----CCHHHHHHHHhcC
Confidence 89999999995 779999999888 9999999999864
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=2.2e-21 Score=189.63 Aligned_cols=124 Identities=14% Similarity=0.233 Sum_probs=92.0
Q ss_pred cEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccc--hHHh
Q 036436 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP--QVEV 355 (485)
Q Consensus 278 ~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p--~~~l 355 (485)
+.|+|.+|+.. ...++++++..+. +.+++.... .....+ ..|+.+.+|.| ..++
T Consensus 189 ~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~--------~~~~~~---------~~~v~~~~~~~~~~~~~ 244 (321)
T TIGR00661 189 DYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYE--------VAKNSY---------NENVEIRRITTDNFKEL 244 (321)
T ss_pred CcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCC--------CCcccc---------CCCEEEEECChHHHHHH
Confidence 37888888754 2456777777653 233332210 000111 24788889997 5668
Q ss_pred hhccCcceEEeccCchhhHHhhhcCCcEEeccccc--chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhc
Q 036436 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMD 433 (485)
Q Consensus 356 L~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~ 433 (485)
|+.+++ +|||||++|++|++++|+|+|++|... ||..||+.++ +.|+|+.++..+ + ++.+++.++++
T Consensus 245 l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~~l~~~~-----~---~~~~~~~~~~~ 313 (321)
T TIGR00661 245 IKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGIALEYKE-----L---RLLEAILDIRN 313 (321)
T ss_pred HHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEEEcChhh-----H---HHHHHHHhccc
Confidence 888998 999999999999999999999999955 8999999996 669999998876 5 66777777887
Q ss_pred Cch
Q 036436 434 SEK 436 (485)
Q Consensus 434 ~~~ 436 (485)
|+.
T Consensus 314 ~~~ 316 (321)
T TIGR00661 314 MKR 316 (321)
T ss_pred ccc
Confidence 776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.83 E-value=8e-18 Score=167.44 Aligned_cols=344 Identities=14% Similarity=0.095 Sum_probs=198.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLR 81 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (485)
++||+|+..+..||...++.|+++|.++| |+|++++........ .. ...++.++.++.. . +..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g--~ev~vv~~~~~~~~~-----~~-----~~~g~~~~~~~~~-~-~~~--- 63 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRG--WEVLYLGTARGMEAR-----LV-----PKAGIEFHFIPSG-G-LRR--- 63 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCC--CEEEEEECCCchhhh-----cc-----ccCCCcEEEEecc-C-cCC---
Confidence 16899999999999999999999999999 999999764321000 00 1125666666532 1 110
Q ss_pred CCCCcHHHHHHHH--HhhchhHHHHHHHhhccCCccEEEEcCC-cch-hHHHHhhhcCCceEEEecchhHhHhHHhhhcc
Q 036436 82 SPADFPALVYELG--ELNNPNLHETLITISKRSNLKAFVIDFL-CNP-AFQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (485)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~pD~VI~D~~-~~~-~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~ 157 (485)
......+.... -.....+.+++++. +||+|++... ..+ +..++ +..++|++.... ..
T Consensus 64 --~~~~~~l~~~~~~~~~~~~~~~~ik~~----~pDvv~~~~~~~~~~~~~~~-~~~~~p~v~~~~-~~----------- 124 (357)
T PRK00726 64 --KGSLANLKAPFKLLKGVLQARKILKRF----KPDVVVGFGGYVSGPGGLAA-RLLGIPLVIHEQ-NA----------- 124 (357)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEECCCcchhHHHHHH-HHcCCCEEEEcC-CC-----------
Confidence 11111111111 11333455566665 9999999862 233 44456 888999985311 00
Q ss_pred cccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccC
Q 036436 158 LHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (485)
.++ ..+. .....++.++..+...+ .. .
T Consensus 125 ------------------~~~-------------------~~~r-----~~~~~~d~ii~~~~~~~--------~~---~ 151 (357)
T PRK00726 125 ------------------VPG-------------------LANK-----LLARFAKKVATAFPGAF--------PE---F 151 (357)
T ss_pred ------------------Ccc-------------------HHHH-----HHHHHhchheECchhhh--------hc---c
Confidence 000 0000 01122344443322111 00 1
Q ss_pred CCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCC--eEEEEEeC
Q 036436 238 PGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGV--KFLWVVRA 315 (485)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~--~~i~~~~~ 315 (485)
+. .+++++|+........ ... ...-+...++..+|++..|+... ......+.+++..... .+++.++.
T Consensus 152 ~~---~~i~vi~n~v~~~~~~---~~~--~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~ 221 (357)
T PRK00726 152 FK---PKAVVTGNPVREEILA---LAA--PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGK 221 (357)
T ss_pred CC---CCEEEECCCCChHhhc---ccc--hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCC
Confidence 12 6788898554432210 000 00111111233366665555431 2222233366655443 34555555
Q ss_pred CCCCCccccccccccCchhhHhhhc-CCCeEeecccc-hHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc----c
Q 036436 316 PAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----Y 389 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~n~~v~~~~p-~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~ 389 (485)
.. . +.+.+..+ .-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. .
T Consensus 222 g~----------~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 222 GD----------L----EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred Cc----------H----HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCc
Confidence 30 1 22222222 11367778984 5789999999 9999999999999999999999997 3
Q ss_pred cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 036436 390 AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLV 469 (485)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (485)
.||..|+..+.+ .|.|..++.++ ++++.|++++.++++|++ ++++..+-+.+.. +.++..+.++.+.
T Consensus 286 ~~~~~~~~~i~~-~~~g~~~~~~~-----~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~ 352 (357)
T PRK00726 286 DHQTANARALVD-AGAALLIPQSD-----LTPEKLAEKLLELLSDPE---RLEAMAEAARALG----KPDAAERLADLIE 352 (357)
T ss_pred CcHHHHHHHHHH-CCCEEEEEccc-----CCHHHHHHHHHHHHcCHH---HHHHHHHHHHhcC----CcCHHHHHHHHHH
Confidence 689999999964 59999999877 889999999999999887 5444333333222 2345556776666
Q ss_pred HHHH
Q 036436 470 ESFK 473 (485)
Q Consensus 470 ~~~~ 473 (485)
+.++
T Consensus 353 ~~~~ 356 (357)
T PRK00726 353 ELAR 356 (357)
T ss_pred HHhh
Confidence 6554
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=9.9e-17 Score=159.13 Aligned_cols=314 Identities=14% Similarity=0.127 Sum_probs=185.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSP 83 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 83 (485)
||++.+.++.||+...+.|++.|.++| |+|++++........ .. ...+++++.++... +. .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G--~ev~v~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~--~~----~- 61 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERG--AEVLFLGTKRGLEAR-----LV-----PKAGIPLHTIPVGG--LR----R- 61 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCC--CEEEEEECCCcchhh-----cc-----cccCCceEEEEecC--cC----C-
Confidence 589999999999999999999999999 999999764321100 00 11246666665321 00 0
Q ss_pred CCcHHHHHHHHH--hhchhHHHHHHHhhccCCccEEEEcCC--cchhHHHHhhhcCCceEEEecchhHhHhHHhhhcccc
Q 036436 84 ADFPALVYELGE--LNNPNLHETLITISKRSNLKAFVIDFL--CNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (485)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~pD~VI~D~~--~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 159 (485)
......+...+. .....+..++++. +||+|++... ...+..+| +..++|++.... .
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~i~~~----~pDvI~~~~~~~~~~~~~~a-~~~~~p~v~~~~-~-------------- 121 (350)
T cd03785 62 KGSLKKLKAPFKLLKGVLQARKILKKF----KPDVVVGFGGYVSGPVGLAA-KLLGIPLVIHEQ-N-------------- 121 (350)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEECCCCcchHHHHHH-HHhCCCEEEEcC-C--------------
Confidence 111111211111 1233455566665 9999998653 23345567 899999985311 0
Q ss_pred cccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccCCC
Q 036436 160 KNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPG 239 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (485)
..++ ..+. .....++.++..+....+. +++
T Consensus 122 ---------------~~~~-------------------~~~~-----~~~~~~~~vi~~s~~~~~~-----------~~~ 151 (350)
T cd03785 122 ---------------AVPG-------------------LANR-----LLARFADRVALSFPETAKY-----------FPK 151 (350)
T ss_pred ---------------CCcc-------------------HHHH-----HHHHhhCEEEEcchhhhhc-----------CCC
Confidence 0000 0000 1112345666554332221 112
Q ss_pred CCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCH-HhHHHHHHHHHhCCCeEEEEEeCCCC
Q 036436 240 ETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSS-KQLKEMAIGLERSGVKFLWVVRAPAP 318 (485)
Q Consensus 240 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~ 318 (485)
.++.++|......... .. .. .+.+...+++.+|++..|+...... +.+..++..+...+..+++.++..
T Consensus 152 ---~~~~~i~n~v~~~~~~---~~-~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-- 221 (350)
T cd03785 152 ---DKAVVTGNPVREEILA---LD-RE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-- 221 (350)
T ss_pred ---CcEEEECCCCchHHhh---hh-hh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc--
Confidence 5788888544321110 00 01 1122222333356666666542111 112233344433344455666543
Q ss_pred CCccccccccccCchhhHhhhc--CCCeEeeccc-chHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc----ccc
Q 036436 319 DSVENRSSLESLLPEGFLDRTK--DRGLVVESWA-PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----YAE 391 (485)
Q Consensus 319 ~~~~~~~~~~~~lp~~~~~~~~--~~n~~v~~~~-p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~D 391 (485)
..+.+.+.+. ..|+.+.+|+ +...+|+.+++ +|+++|.+|++||+++|+|+|++|. ..+
T Consensus 222 ------------~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~ 287 (350)
T cd03785 222 ------------DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDH 287 (350)
T ss_pred ------------cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCc
Confidence 0112222222 3588898998 56779999999 9999999999999999999999986 357
Q ss_pred hhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch
Q 036436 392 QKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
|..|+..+.+ .|+|..++..+ .+.+++.+++.++++|++
T Consensus 288 ~~~~~~~l~~-~g~g~~v~~~~-----~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 288 QTANARALVK-AGAAVLIPQEE-----LTPERLAAALLELLSDPE 326 (350)
T ss_pred HHHhHHHHHh-CCCEEEEecCC-----CCHHHHHHHHHHHhcCHH
Confidence 9999999964 59999998876 689999999999998775
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.75 E-value=9.8e-16 Score=142.25 Aligned_cols=340 Identities=17% Similarity=0.148 Sum_probs=209.1
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhC--CCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCC
Q 036436 3 DTIVLYTS--PGRGHLNSMVELGKLILTY--HPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPD 78 (485)
Q Consensus 3 ~~il~~~~--~~~GHv~P~l~La~~L~~r--G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 78 (485)
+||+|++. .+-||+...+.+|++|.+. | .+|++++..+...-- ....+++|+.+|.... ...
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~--~~Il~IsG~~~~~~F-----------~~~~gVd~V~LPsl~k-~~~ 75 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLG--FDILIISGGPPAGGF-----------PGPAGVDFVKLPSLIK-GDN 75 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccC--ceEEEEeCCCccCCC-----------CCcccCceEecCceEe-cCC
Confidence 48999998 6778999999999999999 8 999999876553311 2335899999996522 122
Q ss_pred CCCCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhHhHHhhhccc
Q 036436 79 TLRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTL 158 (485)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~ 158 (485)
+.....+.-....++.+...+-+...++.+ +||++|+|. ++.++.. |.+ |. .. |+...
T Consensus 76 G~~~~~d~~~~l~e~~~~Rs~lil~t~~~f----kPDi~IVd~-~P~Glr~--EL~--pt-----------L~--yl~~~ 133 (400)
T COG4671 76 GEYGLVDLDGDLEETKKLRSQLILSTAETF----KPDIFIVDK-FPFGLRF--ELL--PT-----------LE--YLKTT 133 (400)
T ss_pred CceeeeecCCCHHHHHHHHHHHHHHHHHhc----CCCEEEEec-cccchhh--hhh--HH-----------HH--HHhhc
Confidence 222212222224556666677778888888 999999998 4444221 000 00 00 00000
Q ss_pred ccccCccccccCcccccCCCCCCCCcccCCCcccCCCchh-HHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccC
Q 036436 159 HKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKV-YKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (485)
.. .. .+-.+++-+........| .+..... .-+..|.+++...+.+... ..+|.+
T Consensus 134 ~t-------------~~-----vL~lr~i~D~p~~~~~~w~~~~~~~~--I~r~yD~V~v~GdP~f~d~-----~~~~~~ 188 (400)
T COG4671 134 GT-------------RL-----VLGLRSIRDIPQELEADWRRAETVRL--INRFYDLVLVYGDPDFYDP-----LTEFPF 188 (400)
T ss_pred CC-------------cc-----eeehHhhhhchhhhccchhhhHHHHH--HHHhheEEEEecCccccCh-----hhcCCc
Confidence 00 00 000011111000111111 1111111 1233466777666665442 222222
Q ss_pred CCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHh-CCCe--EEEEEe
Q 036436 238 PGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER-SGVK--FLWVVR 314 (485)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~-~~~~--~i~~~~ 314 (485)
++....+++|+|.+...-+.. +. +.. | . +++.-|+||-|... ...+.+...++|-.. .+.+ .+++++
T Consensus 189 ~~~i~~k~~ytG~vq~~~~~~---~~-p~~--~--~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtG 258 (400)
T COG4671 189 APAIRAKMRYTGFVQRSLPHL---PL-PPH--E--A-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTG 258 (400)
T ss_pred cHhhhhheeEeEEeeccCcCC---CC-CCc--C--C-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeC
Confidence 222235899999982221110 11 111 1 1 34447999988765 456666666666555 3444 455555
Q ss_pred CCCCCCccccccccccCchhhHhhhc-----CCCeEeecccch-HHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc
Q 036436 315 APAPDSVENRSSLESLLPEGFLDRTK-----DRGLVVESWAPQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (485)
Q Consensus 315 ~~~~~~~~~~~~~~~~lp~~~~~~~~-----~~n~~v~~~~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 388 (485)
.. +|+.-.++.. -+++.+..|-.+ ..++..++. +|+-||+||+.|-|++|+|.+++|+
T Consensus 259 P~--------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr 322 (400)
T COG4671 259 PF--------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPR 322 (400)
T ss_pred CC--------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEecc
Confidence 43 6654444332 368888888665 669999999 9999999999999999999999998
Q ss_pred c---cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc
Q 036436 389 Y---AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE 435 (485)
Q Consensus 389 ~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~ 435 (485)
. .||-.-|.|+ ++||..-.+-.+. +++..++++|...++-+
T Consensus 323 ~~p~eEQliRA~Rl-~~LGL~dvL~pe~-----lt~~~La~al~~~l~~P 366 (400)
T COG4671 323 AAPREEQLIRAQRL-EELGLVDVLLPEN-----LTPQNLADALKAALARP 366 (400)
T ss_pred CCCcHHHHHHHHHH-HhcCcceeeCccc-----CChHHHHHHHHhcccCC
Confidence 5 4999999999 5899999999988 99999999999999844
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=3.2e-16 Score=156.62 Aligned_cols=351 Identities=13% Similarity=0.073 Sum_probs=189.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
.+|++++.++.||++|. +|+++|+++| ++|.|+..... .++.... ...+++..++.. + +.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~--~~~~~~g~gg~---------~m~~~g~-~~~~~~~~l~v~-G-~~----- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHY--PNARFIGVAGP---------RMAAEGC-EVLYSMEELSVM-G-LR----- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcC--CCcEEEEEccH---------HHHhCcC-ccccChHHhhhc-c-HH-----
Confidence 58999999999999999 9999999999 88888864422 1111100 002333222210 0 10
Q ss_pred CCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEE-cCCcchhHH--HHhhhcCCceEEEecchhHhHhHHhhhcccc
Q 036436 83 PADFPALVYELGELNNPNLHETLITISKRSNLKAFVI-DFLCNPAFQ--VSSSTLSIPTYYYFTTAGSVLAANLYLPTLH 159 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~-D~~~~~~~~--vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 159 (485)
+....+..+. ........++++. +||+||. |+.+..... .| +.+|||++.+.+ |..
T Consensus 66 --~~l~~~~~~~-~~~~~~~~~l~~~----kPd~vi~~g~~~~~~~~a~aa-~~~gip~v~~i~------------P~~- 124 (385)
T TIGR00215 66 --EVLGRLGRLL-KIRKEVVQLAKQA----KPDLLVGIDAPDFNLTKELKK-KDPGIKIIYYIS------------PQV- 124 (385)
T ss_pred --HHHHHHHHHH-HHHHHHHHHHHhc----CCCEEEEeCCCCccHHHHHHH-hhCCCCEEEEeC------------CcH-
Confidence 1111111221 1233555666666 9999995 542222122 56 999999986531 110
Q ss_pred cccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccCCC
Q 036436 160 KNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPG 239 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (485)
| .|... . .....+.++.+++. ++. +... +... +
T Consensus 125 -------w-----------------------aw~~~-~-------~r~l~~~~d~v~~~-~~~-e~~~---~~~~----g 157 (385)
T TIGR00215 125 -------W-----------------------AWRKW-R-------AKKIEKATDFLLAI-LPF-EKAF---YQKK----N 157 (385)
T ss_pred -------h-----------------------hcCcc-h-------HHHHHHHHhHhhcc-CCC-cHHH---HHhc----C
Confidence 0 00000 0 00111223333322 222 2111 1111 1
Q ss_pred CCCCCeeeeC-CccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhC-----CCeEEEEE
Q 036436 240 ETLPPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS-----GVKFLWVV 313 (485)
Q Consensus 240 ~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-----~~~~i~~~ 313 (485)
.+..+|| |+........ .......+.+.-.+++++|.+-.||....-...+..++++++.. +..+++..
T Consensus 158 ---~~~~~vGnPv~~~~~~~~--~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~ 232 (385)
T TIGR00215 158 ---VPCRFVGHPLLDAIPLYK--PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPV 232 (385)
T ss_pred ---CCEEEECCchhhhccccC--CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 3577899 5433211100 11111222222223455788878887632122344455554432 33454543
Q ss_pred eCCCCCCccccccccccCchhhHhhhc-CCCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEec----cc
Q 036436 314 RAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW----PL 388 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~----P~ 388 (485)
.... ....+ +.+...+. ...+.+..+ +...+|+.+|+ +|+-.|..|+ |++++|+|+|++ |+
T Consensus 233 ~~~~---------~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl 298 (385)
T TIGR00215 233 VNFK---------RRLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPL 298 (385)
T ss_pred CCch---------hHHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHH
Confidence 2210 00000 11111111 112322222 34568999999 9999999988 999999999999 87
Q ss_pred cc---------chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc----h-HHHHHHHHHHHHHHHHHH
Q 036436 389 YA---------EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE----K-GRAVKERAVAMKEAAAAA 454 (485)
Q Consensus 389 ~~---------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~----~-~~~~~~~a~~l~~~~~~~ 454 (485)
.. .|..|+..++.+ ++...+-..+ +|++.|.+.+.+++.|+ + .+.+++...++++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~~-----~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l--- 369 (385)
T TIGR00215 299 TFLIARRLVKTDYISLPNILANR-LLVPELLQEE-----CTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI--- 369 (385)
T ss_pred HHHHHHHHHcCCeeeccHHhcCC-ccchhhcCCC-----CCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh---
Confidence 42 277899999754 8888888777 99999999999999998 6 233444444444444
Q ss_pred HhcCCcHHHHHHHHHH
Q 036436 455 MRDGGSSRVALDNLVE 470 (485)
Q Consensus 455 ~~~~g~~~~~~~~l~~ 470 (485)
.++|.+.++.+.+.+
T Consensus 370 -~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 370 -YCNADSERAAQAVLE 384 (385)
T ss_pred -cCCCHHHHHHHHHhh
Confidence 456777777776654
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.72 E-value=7.4e-15 Score=145.55 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=68.7
Q ss_pred chHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc---cchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHH
Q 036436 351 PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY---AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQR 427 (485)
Q Consensus 351 p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (485)
+...+|+.+++ +|+++|.+|++||+++|+|+|++|.. .+|..|+..+. ..|.|..++..+ .+++.|.++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~-~~~~G~~~~~~~-----~~~~~l~~~ 314 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE-DLGAGLVIRQKE-----LLPEKLLEA 314 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH-HCCCEEEEeccc-----CCHHHHHHH
Confidence 56779999999 99999988999999999999999873 47888988886 569999988776 789999999
Q ss_pred HHHHhcCch
Q 036436 428 VSELMDSEK 436 (485)
Q Consensus 428 i~~vl~~~~ 436 (485)
+.++++|++
T Consensus 315 i~~ll~~~~ 323 (348)
T TIGR01133 315 LLKLLLDPA 323 (348)
T ss_pred HHHHHcCHH
Confidence 999998876
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=5.7e-15 Score=148.24 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=95.5
Q ss_pred CCcEEEEecCCCccCCHHhHHHHHHHHHhC-CCeEEEEEeCCCCCCccccccccccCchhhHhhhc--CCCeEeecccch
Q 036436 276 SRSVLFLCFGSLGSFSSKQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK--DRGLVVESWAPQ 352 (485)
Q Consensus 276 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~n~~v~~~~p~ 352 (485)
++++|++..|+.... ..+..+++++... +.+++++.+.+ .. +-+.+.+..+ ..|+.+.+|+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~---------~~---~~~~l~~~~~~~~~~v~~~g~~~~ 266 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN---------EA---LKQSLEDLQETNPDALKVFGYVEN 266 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC---------HH---HHHHHHHHHhcCCCcEEEEechhh
Confidence 345777777876522 2356677777654 45666666542 00 1112222111 247889899987
Q ss_pred -HHhhhccCcceEEeccCchhhHHhhhcCCcEEec-ccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHH
Q 036436 353 -VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW-PLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSE 430 (485)
Q Consensus 353 -~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~ 430 (485)
..++..+++ +|+.+|..|++||+++|+|+|+. |..+.+..|+..+. ..|+|+.. -+.+++.++|.+
T Consensus 267 ~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~-~~G~~~~~---------~~~~~l~~~i~~ 334 (380)
T PRK13609 267 IDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE-RKGAAVVI---------RDDEEVFAKTEA 334 (380)
T ss_pred HHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH-hCCcEEEE---------CCHHHHHHHHHH
Confidence 479999999 99999988999999999999985 67777888998885 45888753 257899999999
Q ss_pred HhcCch
Q 036436 431 LMDSEK 436 (485)
Q Consensus 431 vl~~~~ 436 (485)
+++|++
T Consensus 335 ll~~~~ 340 (380)
T PRK13609 335 LLQDDM 340 (380)
T ss_pred HHCCHH
Confidence 999876
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.65 E-value=1.5e-14 Score=138.02 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=77.8
Q ss_pred cEEEEecCCCccCCHHhHHHHHHHHHhC--CCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccchH-
Q 036436 278 SVLFLCFGSLGSFSSKQLKEMAIGLERS--GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQV- 353 (485)
Q Consensus 278 ~~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~n~~v~~~~p~~- 353 (485)
+.|+|+||...... ....+++++... +..+.++++.... ..+.+.+..+ .+|+.+..++++.
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~------------~~~~l~~~~~~~~~i~~~~~~~~m~ 236 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP------------NLDELKKFAKEYPNIILFIDVENMA 236 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc------------CHHHHHHHHHhCCCEEEEeCHHHHH
Confidence 47999999765322 445677777664 4567777766410 1122332222 3588888999875
Q ss_pred HhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHH
Q 036436 354 EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAV 398 (485)
Q Consensus 354 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 398 (485)
.+|+.+++ +|++|| +|++|+++.|+|+|++|+..+|..||+.
T Consensus 237 ~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 237 ELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 79999999 999999 9999999999999999999999999875
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=2.4e-14 Score=143.78 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=71.1
Q ss_pred hHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccccc--------chhHH-----HHHHHHhhceEEEEeccCCCCCc
Q 036436 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--------EQKMI-----KAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 352 ~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
...+++.+++ +|+.+|.+++ |++++|+|+|++|-.. .|..| +..++ .-+++..+....
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~----- 325 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLA-GRELVPELLQEE----- 325 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhc-CCCcchhhcCCC-----
Confidence 4678999999 9999998887 9999999999995432 22222 22232 213344444444
Q ss_pred cCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 419 VSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
.+++.|.+++.++++|++ .+.++++++++.+.+ ..|++.+.++.+.+.+.
T Consensus 326 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 326 ATPEKLARALLPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLELLK 376 (380)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhh
Confidence 789999999999999987 334445554444433 24566667666665443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.56 E-value=5.6e-13 Score=133.98 Aligned_cols=172 Identities=13% Similarity=0.198 Sum_probs=114.0
Q ss_pred CCcEEEEecCCCccCCHHhHHHHHHHHHh--CCCeEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeecccch
Q 036436 276 SRSVLFLCFGSLGSFSSKQLKEMAIGLER--SGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAPQ 352 (485)
Q Consensus 276 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~n~~v~~~~p~ 352 (485)
++++|++..|+... ...+..+++++.. .+..++++.+.+ . .+-+.+.+.. ...++.+.+|.++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~---------~---~l~~~l~~~~~~~~~v~~~G~~~~ 266 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS---------K---ELKRSLTAKFKSNENVLILGYTKH 266 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC---------H---HHHHHHHHHhccCCCeEEEeccch
Confidence 45588888888762 1334555555432 245666665543 0 0112222222 1347888899965
Q ss_pred -HHhhhccCcceEEeccCchhhHHhhhcCCcEEec-ccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHH
Q 036436 353 -VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW-PLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSE 430 (485)
Q Consensus 353 -~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~ 430 (485)
..++..+|+ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+. +.|+|+.+. +.+++.++|.+
T Consensus 267 ~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~-~~G~g~~~~---------~~~~l~~~i~~ 334 (391)
T PRK13608 267 MNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFE-EKGFGKIAD---------TPEEAIKIVAS 334 (391)
T ss_pred HHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHH-hCCcEEEeC---------CHHHHHHHHHH
Confidence 469999999 99998888999999999999998 67777789999996 559997632 57889999999
Q ss_pred HhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCCCCC
Q 036436 431 LMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG--RMAPLG 481 (485)
Q Consensus 431 vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~--~~~~~~ 481 (485)
+++|++ .+.++++++++++ ..+..+.++.+++.+.+. ++.|.+
T Consensus 335 ll~~~~~~~~m~~~~~~~~~--------~~s~~~i~~~l~~l~~~~~~~~~~~~ 380 (391)
T PRK13608 335 LTNGNEQLTNMISTMEQDKI--------KYATQTICRDLLDLIGHSSQPQEIYG 380 (391)
T ss_pred HhcCHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHhhhhhhhhhhhc
Confidence 998875 2334444443322 345557777777776653 444443
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.54 E-value=2.3e-12 Score=129.28 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=81.8
Q ss_pred CCeEeecccch-HHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchh-HHHHHHHHhhceEEEEeccCCCCCcc
Q 036436 342 RGLVVESWAPQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQK-MIKAVVVEEMKVGLAVTRSEEGDGLV 419 (485)
Q Consensus 342 ~n~~v~~~~p~-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~ 419 (485)
.++.+.+|+++ .++|+.+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ .
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~---~------ 332 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS---E------ 332 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec---C------
Confidence 46778899885 569999999 999999999999999999999998766665 68888864 4998754 3
Q ss_pred CHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 420 SSAELEQRVSELMDS-EKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 420 ~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
+++.|.++|.++++| ++ .+ +++++..++. ....++.+.++.+.+.+.
T Consensus 333 ~~~~la~~i~~ll~~~~~---~~---~~m~~~~~~~-~~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 333 SPKEIARIVAEWFGDKSD---EL---EAMSENALKL-ARPEAVFDIVHDLHELVR 380 (382)
T ss_pred CHHHHHHHHHHHHcCCHH---HH---HHHHHHHHHh-cCCchHHHHHHHHHHHhh
Confidence 689999999999987 43 22 2233333322 123444455555555443
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.53 E-value=1.8e-15 Score=133.44 Aligned_cols=136 Identities=15% Similarity=0.272 Sum_probs=97.6
Q ss_pred EEEEecCCCccCCHHh-HHHHHHHHHhC--CCeEEEEEeCCCCCCccccccccccCchhhHhhhc--CCCeEeecccc-h
Q 036436 279 VLFLCFGSLGSFSSKQ-LKEMAIGLERS--GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK--DRGLVVESWAP-Q 352 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~-~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~n~~v~~~~p-~ 352 (485)
+|+|+.||........ +..++..+... ...+++++|... . ......+. ..++.+.+|.+ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~---------~-----~~~~~~~~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN---------Y-----EELKIKVENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE---------C-----HHHCCCHCCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc---------H-----HHHHHHHhccCCcEEEEechhhH
Confidence 5899999876321111 22334433332 467888887640 0 11111111 15788999999 7
Q ss_pred HHhhhccCcceEEeccCchhhHHhhhcCCcEEeccccc----chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHH
Q 036436 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA----EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRV 428 (485)
Q Consensus 353 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai 428 (485)
..++..+++ +|||||.||++|++++|+|+|++|... +|..||..++ +.|+|..+.... .+.+.|.++|
T Consensus 67 ~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~~-----~~~~~L~~~i 138 (167)
T PF04101_consen 67 AELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDESE-----LNPEELAEAI 138 (167)
T ss_dssp HHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECCC------SCCCHHHHH
T ss_pred HHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCccc-----CCHHHHHHHH
Confidence 889999999 999999999999999999999999988 9999999996 559999999888 8899999999
Q ss_pred HHHhcCch
Q 036436 429 SELMDSEK 436 (485)
Q Consensus 429 ~~vl~~~~ 436 (485)
.+++.++.
T Consensus 139 ~~l~~~~~ 146 (167)
T PF04101_consen 139 EELLSDPE 146 (167)
T ss_dssp HCHCCCHH
T ss_pred HHHHcCcH
Confidence 99998875
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.49 E-value=2.3e-11 Score=121.81 Aligned_cols=195 Identities=18% Similarity=0.163 Sum_probs=114.1
Q ss_pred CCeeeeC-CccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhC----CCeEEEEEeCCC
Q 036436 243 PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS----GVKFLWVVRAPA 317 (485)
Q Consensus 243 ~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~----~~~~i~~~~~~~ 317 (485)
-++.+|| |+...-... ... -++ ++.++|.|--||-...-...+..++++++.. +..|++.+.+..
T Consensus 180 ~k~~~vGnPv~d~l~~~----~~~----~l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~ 249 (396)
T TIGR03492 180 VRASYLGNPMMDGLEPP----ERK----PLL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL 249 (396)
T ss_pred CeEEEeCcCHHhcCccc----ccc----ccC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 4799999 665542211 111 122 2334788888988533334445566666554 567777774331
Q ss_pred CCCccccccccccCch-hhHh---------hhcCCCeEeeccc-chHHhhhccCcceEEeccCchhhHHhhhcCCcEEec
Q 036436 318 PDSVENRSSLESLLPE-GFLD---------RTKDRGLVVESWA-PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (485)
Q Consensus 318 ~~~~~~~~~~~~~lp~-~~~~---------~~~~~n~~v~~~~-p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 386 (485)
.. ......+.+ ++.. .....++.+..+. +..+++..+++ +|+-.|..| .|+...|+|+|++
T Consensus 250 ~~-----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ili 321 (396)
T TIGR03492 250 SL-----EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQL 321 (396)
T ss_pred CH-----HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEE
Confidence 00 000000000 1000 0111234454554 34679999999 999999766 9999999999999
Q ss_pred ccccchhHHHHHHHHhh----ceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 036436 387 PLYAEQKMIKAVVVEEM----KVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSR 462 (485)
Q Consensus 387 P~~~DQ~~na~~v~~~~----G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (485)
|+-..|. |+...+ +. |.++.+.. .+.+.|.+++.++++|++ .+++.. +...+.+.+++.+.
T Consensus 322 p~~~~q~-na~~~~-~~~~l~g~~~~l~~-------~~~~~l~~~l~~ll~d~~---~~~~~~---~~~~~~lg~~~a~~ 386 (396)
T TIGR03492 322 PGKGPQF-TYGFAE-AQSRLLGGSVFLAS-------KNPEQAAQVVRQLLADPE---LLERCR---RNGQERMGPPGASA 386 (396)
T ss_pred eCCCCHH-HHHHHH-hhHhhcCCEEecCC-------CCHHHHHHHHHHHHcCHH---HHHHHH---HHHHHhcCCCCHHH
Confidence 9877786 887664 32 66677665 356999999999999876 443333 12222223446665
Q ss_pred HHHHHHHH
Q 036436 463 VALDNLVE 470 (485)
Q Consensus 463 ~~~~~l~~ 470 (485)
+.++.+.+
T Consensus 387 ~ia~~i~~ 394 (396)
T TIGR03492 387 RIAESILK 394 (396)
T ss_pred HHHHHHHH
Confidence 55555443
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.33 E-value=3e-09 Score=105.34 Aligned_cols=110 Identities=24% Similarity=0.256 Sum_probs=76.5
Q ss_pred CCCeEeecccchHH---hhhccCcceEEeccC----chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..|+.+.+|+++.+ ++..+++ +|+++. .++++||+++|+|+|+.+..+ +...+. .-+.|...+.
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~-~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVT-DGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhc-CCcceEEcCC--
Confidence 45888989988654 7888998 887754 378999999999999987654 344453 4488888776
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (485)
-+.+++.+++.+++.|++ .+.+.+++++..+ .-+..+.++++++.+
T Consensus 317 -----~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 363 (364)
T cd03814 317 -----GDAEAFAAALAALLADPELRRRMAARARAEAE--------RRSWEAFLDNLLEAY 363 (364)
T ss_pred -----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh--------hcCHHHHHHHHHHhh
Confidence 367889999999999886 2333333333221 244446666666543
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.32 E-value=1.8e-13 Score=116.67 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=80.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPA 84 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~ 84 (485)
|+|++.|+.||++|+++||++|++|| |+|+++++. .+...++.. |++|..++.+.. ++...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rG--h~V~~~~~~-------~~~~~v~~~-----Gl~~~~~~~~~~-~~~~~---- 61 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRG--HEVRLATPP-------DFRERVEAA-----GLEFVPIPGDSR-LPRSL---- 61 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEETG-------GGHHHHHHT-----T-EEEESSSCGG-GGHHH----
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccC--CeEEEeecc-------cceeccccc-----CceEEEecCCcC-cCccc----
Confidence 78999999999999999999999999 999999876 444455554 999999885411 11100
Q ss_pred CcHHHHHHHHHh--hchhHHHHHHHhh--------ccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchhHhH
Q 036436 85 DFPALVYELGEL--NNPNLHETLITIS--------KRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAGSVL 149 (485)
Q Consensus 85 ~~~~~~~~~~~~--~~~~~~~ll~~~~--------~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~ 149 (485)
.....+....+. ....+.+.+++.. ....+|+++.+.....+..+| |++|||++....++.+.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~va-E~~~iP~~~~~~~p~~~~ 135 (139)
T PF03033_consen 62 EPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVA-EQLGIPGVANRLFPWFAT 135 (139)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHH-HHHTS-EEEEESSGGGST
T ss_pred chhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeE-hhhCchHHHHhhCCcCcC
Confidence 011111111111 2222333333322 123678888888777788899 999999999988776653
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.28 E-value=1.9e-08 Score=103.76 Aligned_cols=141 Identities=21% Similarity=0.213 Sum_probs=90.4
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhCC-CeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHH---
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERSG-VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVE--- 354 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~--- 354 (485)
.+++..|++. ....+..++++++..+ ..++ .+|.. . ..+.+....+..++.+.+|+++.+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~-ivG~G---------~----~~~~l~~~~~~~~V~f~G~v~~~ev~~ 327 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLA-FVGDG---------P----YREELEKMFAGTPTVFTGMLQGDELSQ 327 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEE-EEeCC---------h----HHHHHHHHhccCCeEEeccCCHHHHHH
Confidence 5556668775 2333666777777754 4544 44432 0 112333344456788989997544
Q ss_pred hhhccCcceEEeccC----chhhHHhhhcCCcEEecccccchhHHHHHHHH--hhceEEEEeccCCCCCccCHHHHHHHH
Q 036436 355 VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVE--EMKVGLAVTRSEEGDGLVSSAELEQRV 428 (485)
Q Consensus 355 lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~--~~G~G~~l~~~~~~~~~~~~~~l~~ai 428 (485)
++..+++ +|.-.. ..+++||+++|+|+|+....+ ....+.+ .-+.|..++.. +.++++++|
T Consensus 328 ~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~-------d~~~la~~i 394 (465)
T PLN02871 328 AYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG-------DVDDCVEKL 394 (465)
T ss_pred HHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC-------CHHHHHHHH
Confidence 7888998 885443 347899999999999876532 2223322 13788888763 689999999
Q ss_pred HHHhcCch-HHHHHHHHHHHH
Q 036436 429 SELMDSEK-GRAVKERAVAMK 448 (485)
Q Consensus 429 ~~vl~~~~-~~~~~~~a~~l~ 448 (485)
.++++|++ .+.+.+++++..
T Consensus 395 ~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 395 ETLLADPELRERMGAAAREEV 415 (465)
T ss_pred HHHHhCHHHHHHHHHHHHHHH
Confidence 99998876 344555555433
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.21 E-value=6.3e-08 Score=96.40 Aligned_cols=353 Identities=15% Similarity=0.119 Sum_probs=173.3
Q ss_pred EEEEEcCCC----ccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC
Q 036436 4 TIVLYTSPG----RGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDT 79 (485)
Q Consensus 4 ~il~~~~~~----~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 79 (485)
||++++... .|+-.....|+++|+++| |+|++++........ ..... .......++.+..++....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----- 70 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRG--HEVTVITGSPNYPSG-KIYKG--YKREEVDGVRVHRVPLPPY----- 70 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCC--ceEEEEecCCCcccc-ccccc--ceEEecCCeEEEEEecCCC-----
Confidence 466666532 589999999999999999 999999765432221 00000 0001223566655553211
Q ss_pred CCCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCc-c---hhHHHHhhhcCCceEEEecchhHhHhHHhhh
Q 036436 80 LRSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLC-N---PAFQVSSSTLSIPTYYYFTTAGSVLAANLYL 155 (485)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~-~---~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~ 155 (485)
........+.............+.. +..+||+|++.... . .+..++ +..++|++....... +......
T Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~D~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~-~~~~~~~- 142 (394)
T cd03794 71 --KKNGLLKRLLNYLSFALSALLALLK---RRRRPDVIIATSPPLLIALAALLLA-RLKGAPFVLEVRDLW-PESAVAL- 142 (394)
T ss_pred --CccchHHHHHhhhHHHHHHHHHHHh---cccCCCEEEEcCChHHHHHHHHHHH-HhcCCCEEEEehhhc-chhHHHc-
Confidence 0011111222222222222222221 22489999988622 1 123355 667999987543211 1000000
Q ss_pred cccccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHH-HHhhhcccceEEEcCchhhHHHHHHHHHhc
Q 036436 156 PTLHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVD-TGIQMAKSAGIIVNTFELLQERAIKAMLEG 234 (485)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (485)
. .............. .......++.++..+....+. +. .
T Consensus 143 -----------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~-----~~-~ 182 (394)
T cd03794 143 -----------------------------G-----LLKNGSLLYRLLRKLERLIYRRADAIVVISPGMREY-----LV-R 182 (394)
T ss_pred -----------------------------c-----CccccchHHHHHHHHHHHHHhcCCEEEEECHHHHHH-----HH-h
Confidence 0 00000000011111 122345677777777543332 21 1
Q ss_pred ccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCcc-CCHHhHHHHHHHHHhC-CCeEEEE
Q 036436 235 QCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGS-FSSKQLKEMAIGLERS-GVKFLWV 312 (485)
Q Consensus 235 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~-~~~~~~~~i~~al~~~-~~~~i~~ 312 (485)
...+. .++..+............ .......... ..+++.+++..|+... ...+.+..++..+... +..+++
T Consensus 183 ~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i- 255 (394)
T cd03794 183 RGVPP---EKISVIPNGVDLELFKPP-PADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI- 255 (394)
T ss_pred cCCCc---CceEEcCCCCCHHHcCCc-cchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-
Confidence 11111 456665533322111000 0000011111 1223467777888762 2333344444444333 344433
Q ss_pred EeCCCCCCccccccccccCchhhHh---hhcCCCeEeecccchHH---hhhccCcceEEeccC---------chhhHHhh
Q 036436 313 VRAPAPDSVENRSSLESLLPEGFLD---RTKDRGLVVESWAPQVE---VLNHESVGGFVTHCG---------WNSVLEGV 377 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~n~~v~~~~p~~~---lL~~~~~~~~I~HgG---------~gs~~eal 377 (485)
++... ..+.+.+ ....+|+.+.+++++.+ ++..+++ +|.... -++++||+
T Consensus 256 ~G~~~-------------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~ 320 (394)
T cd03794 256 VGDGP-------------EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYM 320 (394)
T ss_pred eCCcc-------------cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHH
Confidence 33320 0111211 22346888889998654 6788888 664322 23479999
Q ss_pred hcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Q 036436 378 CAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMK 448 (485)
Q Consensus 378 ~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~ 448 (485)
++|+|+|+.+..+.+... . ..+.|..++. -+.++++++|.++++|++ .+.+++++++..
T Consensus 321 ~~G~pvi~~~~~~~~~~~----~-~~~~g~~~~~-------~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T cd03794 321 AAGKPVLASVDGESAELV----E-EAGAGLVVPP-------GDPEALAAAILELLDDPEERAEMGENGRRYV 380 (394)
T ss_pred HCCCcEEEecCCCchhhh----c-cCCcceEeCC-------CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 999999999887654433 2 2267777766 368999999999998876 334444444433
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.18 E-value=6.9e-08 Score=97.21 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=66.5
Q ss_pred CCCeEeecccchHH---hhhccCcceEEecc---C-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..|+.+.+|+|+.+ ++..+++ +++.. | ..+++||+++|+|+|+....+ ....+. .-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~-~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVV-DGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHcc-CCCCeEEeCC--
Confidence 35788999999765 5888888 77542 2 368999999999999876543 344453 4368888776
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVA 446 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~ 446 (485)
-+.+++.++|.++++|++ .+.+.+++++
T Consensus 353 -----~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 381 (398)
T cd03800 353 -----RDPEALAAALRRLLTDPALRRRLSRAGLR 381 (398)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 369999999999998875 2334444433
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=1.7e-09 Score=98.24 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=99.8
Q ss_pred cEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccc-hHHh
Q 036436 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP-QVEV 355 (485)
Q Consensus 278 ~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~n~~v~~~~p-~~~l 355 (485)
.-|+|++|... +.....+++..+.+.++.+-+++++. +..+..+..++. .+|+...-... ...+
T Consensus 159 r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~------------~p~l~~l~k~~~~~~~i~~~~~~~dma~L 224 (318)
T COG3980 159 RDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS------------NPTLKNLRKRAEKYPNINLYIDTNDMAEL 224 (318)
T ss_pred heEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC------------CcchhHHHHHHhhCCCeeeEecchhHHHH
Confidence 36999999764 44567778888888887776777642 112233444443 45676655555 5569
Q ss_pred hhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc
Q 036436 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE 435 (485)
Q Consensus 356 L~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~ 435 (485)
|..+++ .|+-||. |+.|++.-|+|.+++|+...|-..|... +.+|+-..+.-. ++......-+..+.+|.
T Consensus 225 Mke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~------l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 225 MKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH------LKDLAKDYEILQIQKDY 294 (318)
T ss_pred HHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC------CchHHHHHHHHHhhhCH
Confidence 999999 9998875 8999999999999999999999999999 477877776643 56666666777777777
Q ss_pred h
Q 036436 436 K 436 (485)
Q Consensus 436 ~ 436 (485)
.
T Consensus 295 ~ 295 (318)
T COG3980 295 A 295 (318)
T ss_pred H
Confidence 5
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.15 E-value=8.2e-08 Score=95.09 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=66.8
Q ss_pred CCCeEeecccchHH---hhhccCcceEEecc----CchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.+++|+.+ ++..+++ +|... ...++.||+++|+|+|+.... ..+..+. .-+.|..++...
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~-~~~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVA-DGENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----Chhhhee-cCceeEEeCCCC
Confidence 45888889998654 6888998 77443 347899999999999987543 3445553 437788887644
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKE 449 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~ 449 (485)
. ++.+++.+++++++ .+.+.+++++..+
T Consensus 331 -------~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 331 -------E-ALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred -------H-HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 2 89999999998886 2344444444444
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.15 E-value=1.1e-07 Score=93.74 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=61.4
Q ss_pred CCCeEeecccchHH---hhhccCcceEEec----cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEecc
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTH----CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~H----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (485)
..++.+.+|+++.+ ++..+++ +|.. .|. .+++||+++|+|+|+.+.. .+...+. .-+.|..++.
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~-~~~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVR-DGVNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhc-CCCcEEEECC-
Confidence 46888889997544 6888988 6632 344 4899999999999997653 3455553 4257887776
Q ss_pred CCCCCccCHHHHHHHHHHHhcCch
Q 036436 413 EEGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 413 ~~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
-+.+++.+++.++++|++
T Consensus 314 ------~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 314 ------GDAEDLAAALERLIDDPD 331 (359)
T ss_pred ------CCHHHHHHHHHHHHhChH
Confidence 358999999999999776
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.10 E-value=7.6e-07 Score=87.39 Aligned_cols=331 Identities=14% Similarity=0.085 Sum_probs=168.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSP 83 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 83 (485)
+|++++....|+...+..|+++|.++| |+|++++....... . ....++.+..++.... .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~----~---- 59 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAG--YEVHVVAPPGDELE------E-----LEALGVKVIPIPLDRR----G---- 59 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcC--CeeEEEecCCCccc------c-----cccCCceEEecccccc----c----
Confidence 478888888899999999999999999 99999976543210 0 1223566666653210 0
Q ss_pred CCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcch--hHHHHhhhcCCceEEEecchhHhHhHHhhhcccccc
Q 036436 84 ADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNP--AFQVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKN 161 (485)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~--~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 161 (485)
......+. ....+..++++. +||+|++...... +..++ +..+.|.+.+..........
T Consensus 60 ~~~~~~~~-----~~~~~~~~~~~~----~~dvv~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~---------- 119 (359)
T cd03808 60 INPFKDLK-----ALLRLYRLLRKE----RPDIVHTHTPKPGILGRLAA-RLAGVPKVIYTVHGLGFVFT---------- 119 (359)
T ss_pred cChHhHHH-----HHHHHHHHHHhc----CCCEEEEccccchhHHHHHH-HHcCCCCEEEEecCcchhhc----------
Confidence 11111111 112344555555 9999998754332 33344 54666666544322110000
Q ss_pred cCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccCCCCC
Q 036436 162 TTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCIPGET 241 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (485)
.... ....+... .......++.+++.+....+. +......+ .
T Consensus 120 --------------------------~~~~---~~~~~~~~--~~~~~~~~d~ii~~s~~~~~~-----~~~~~~~~--~ 161 (359)
T cd03808 120 --------------------------SGGL---KRRLYLLL--ERLALRFTDKVIFQNEDDRDL-----ALKLGIIK--K 161 (359)
T ss_pred --------------------------cchh---HHHHHHHH--HHHHHhhccEEEEcCHHHHHH-----HHHhcCCC--c
Confidence 0000 00011111 111234456777776544332 22111100 0
Q ss_pred CCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCc-cCCHHhHHHHHHHHHh--CCCeEEEEEeCCCC
Q 036436 242 LPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLG-SFSSKQLKEMAIGLER--SGVKFLWVVRAPAP 318 (485)
Q Consensus 242 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~i~~al~~--~~~~~i~~~~~~~~ 318 (485)
...++.++......... ..... ..++..+++..|++. ....+.+.+.+..+.. .+..+++ ++....
T Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i-~G~~~~ 230 (359)
T cd03808 162 KKTVLIPGSGVDLDRFS---PSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLL-VGDGDE 230 (359)
T ss_pred CceEEecCCCCChhhcC---ccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEE-EcCCCc
Confidence 02333333222211100 00000 123347777788876 2333334444444433 2334443 333210
Q ss_pred CCccccccccccCchh-hHhhhcCCCeEeecccc-hHHhhhccCcceEEeccC----chhhHHhhhcCCcEEecccccch
Q 036436 319 DSVENRSSLESLLPEG-FLDRTKDRGLVVESWAP-QVEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQ 392 (485)
Q Consensus 319 ~~~~~~~~~~~~lp~~-~~~~~~~~n~~v~~~~p-~~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ 392 (485)
. ...... ........++.+.++.. ...++..+++ +|.... .+++.||+++|+|+|+.+..+
T Consensus 231 ~---------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~-- 297 (359)
T cd03808 231 E---------NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG-- 297 (359)
T ss_pred c---------hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC--
Confidence 0 000000 11111235777777754 3568899998 776543 578999999999999976543
Q ss_pred hHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 036436 393 KMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAM 447 (485)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l 447 (485)
+...+. .-+.|...+. -+.+++.+++.++++|++ .+.+.+++++.
T Consensus 298 --~~~~i~-~~~~g~~~~~-------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 298 --CREAVI-DGVNGFLVPP-------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred --chhhhh-cCcceEEECC-------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 334443 3367877766 368999999999998876 23333444333
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.08 E-value=6.1e-07 Score=88.25 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=62.5
Q ss_pred CCCeEeecccch---HHhhhccCcceEEe----ccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQ---VEVLNHESVGGFVT----HCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~---~~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.+++++ ..++..+++ +|. -|..++++||+++|+|+|+.+. ..+...+. .-+.|...+.
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~-~~~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVE-DGETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhc-CCcceEEeCC--
Confidence 468888899974 347888888 664 2456799999999999999766 33445553 3377777766
Q ss_pred CCCCccCHHHHHHHHHHHhcCch
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
.+.+++.+++.++++|++
T Consensus 326 -----~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 326 -----GDPEALAEAILRLLDDPE 343 (374)
T ss_pred -----CCHHHHHHHHHHHHcChH
Confidence 468999999999998886
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.08 E-value=2.9e-07 Score=91.80 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=73.4
Q ss_pred CCeEeecccch-HHhhhccCcceEEec----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 342 RGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 342 ~n~~v~~~~p~-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
.++.+.++.++ ..++..+++ +|.- |...+++||+++|+|+|+.... ..+..+. .-..|..++.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~-~~~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVK-HGETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----Cchhhhc-CCCceEEcCC-----
Confidence 46777788764 558899998 7733 3346999999999999996543 3455553 3256776665
Q ss_pred CccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 417 GLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
-+.+++.+++.++++|++ ...+++++++... +.-+.+..++++.+.++
T Consensus 321 --~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-------~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 321 --GDVEAMAEYALSLLEDDELWQEFSRAARNRAA-------ERFDSERIVPQYEALYR 369 (371)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHH
Confidence 368999999999998776 2344555554421 12344456666665544
No 55
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.06 E-value=1.5e-07 Score=96.02 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=70.1
Q ss_pred hHHhhhccCcceEEec-----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHH
Q 036436 352 QVEVLNHESVGGFVTH-----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQ 426 (485)
Q Consensus 352 ~~~lL~~~~~~~~I~H-----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (485)
...+++.+++ ++.. +|..+++||+++|+|+|+.|...++......+. .-|.++. . -+.+++++
T Consensus 313 l~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~-~~g~~~~--~-------~d~~~La~ 380 (425)
T PRK05749 313 LGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLL-QAGAAIQ--V-------EDAEDLAK 380 (425)
T ss_pred HHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHH-HCCCeEE--E-------CCHHHHHH
Confidence 3567888887 4432 344469999999999999999888888887774 3365544 3 25889999
Q ss_pred HHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 036436 427 RVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (485)
Q Consensus 427 ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (485)
++.++++|++ .+.+.++++++.+. ..|..++.++.+.+.+
T Consensus 381 ~l~~ll~~~~~~~~m~~~a~~~~~~------~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 381 AVTYLLTDPDARQAYGEAGVAFLKQ------NQGALQRTLQLLEPYL 421 (425)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHhc
Confidence 9999999886 34455555544432 2355556665555433
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.06 E-value=1.2e-06 Score=88.55 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=65.6
Q ss_pred CCCeEeecccchHH---hhhccCcceEEe---ccCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.+++|+.+ +|..+++ +|. +.|. .+++||+++|+|+|+... ......+. .-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~-~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVIT-DGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcc-cCCceEEcCC--
Confidence 45788999998755 6778888 663 2333 489999999999998644 34445553 3246777766
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMK 448 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~ 448 (485)
-++++++++|.++++|++ ...+.+++++..
T Consensus 351 -----~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 351 -----FDPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 469999999999999876 234444444433
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.04 E-value=4.4e-07 Score=92.10 Aligned_cols=91 Identities=21% Similarity=0.348 Sum_probs=61.9
Q ss_pred CCeEee-cccchHH---hhhccCcceEEe-c---cC---chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEe
Q 036436 342 RGLVVE-SWAPQVE---VLNHESVGGFVT-H---CG---WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (485)
Q Consensus 342 ~n~~v~-~~~p~~~---lL~~~~~~~~I~-H---gG---~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (485)
.|+++. +|+|..+ +|..+++ +|. + -| -++++||+++|+|+|+.... .....+ +.-+.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv-~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELV-KHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHh-cCCCCEEEEC
Confidence 466654 5887544 6888998 663 1 12 34799999999999996542 344455 3436787762
Q ss_pred ccCCCCCccCHHHHHHHHHHHhcC---ch-HHHHHHHHHHHH
Q 036436 411 RSEEGDGLVSSAELEQRVSELMDS---EK-GRAVKERAVAMK 448 (485)
Q Consensus 411 ~~~~~~~~~~~~~l~~ai~~vl~~---~~-~~~~~~~a~~l~ 448 (485)
+.++++++|.++++| ++ .+.+.+++++.+
T Consensus 367 ---------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ---------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ---------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 479999999999998 44 455555555544
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.01 E-value=4.3e-06 Score=84.91 Aligned_cols=162 Identities=13% Similarity=0.109 Sum_probs=97.7
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhC----CCeEEEEEeCCCCCCccccccccccCchhhHh---hhcCCCeEeecccc
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERS----GVKFLWVVRAPAPDSVENRSSLESLLPEGFLD---RTKDRGLVVESWAP 351 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~n~~v~~~~p 351 (485)
.+++..|+.. ....+..++++++.. +..++ ++|... ..+.+.+ ...-.|+.+.+|+|
T Consensus 230 ~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g~-------------~~~~l~~~~~~~~l~~v~f~G~~~ 293 (412)
T PRK10307 230 KIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQGG-------------GKARLEKMAQCRGLPNVHFLPLQP 293 (412)
T ss_pred EEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCCh-------------hHHHHHHHHHHcCCCceEEeCCCC
Confidence 6666678875 233355566666543 23333 344320 1122222 22234788889998
Q ss_pred hH---HhhhccCcceEEeccCc------hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHH
Q 036436 352 QV---EVLNHESVGGFVTHCGW------NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSA 422 (485)
Q Consensus 352 ~~---~lL~~~~~~~~I~HgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~ 422 (485)
+. .++..+++.++.+.-+. +.+.|++++|+|+|+....+. .....+ + +.|+.++. -+.+
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~-------~d~~ 361 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP-------ESVE 361 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC-------CCHH
Confidence 65 47888998555555332 236899999999999875431 112233 2 78888876 3689
Q ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 423 ELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 423 ~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
+++++|.++++|++ .+.+++++++..+ +.-+.++.++.+++.+.+.
T Consensus 362 ~la~~i~~l~~~~~~~~~~~~~a~~~~~-------~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 362 ALVAAIAALARQALLRPKLGTVAREYAE-------RTLDKENVLRQFIADIRGL 408 (412)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHHH
Confidence 99999999998875 3455555555433 2344556666766666543
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.00 E-value=1.4e-06 Score=85.97 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=61.6
Q ss_pred CCCeEeecccchH---HhhhccCcceEEe----ccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQV---EVLNHESVGGFVT----HCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~---~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+-+..+ ....+. ..+.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~-~~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIIT-DGENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhc-CCcceeEECC--
Confidence 4688898999864 46778888 662 245678999999999999876543 334453 4366777666
Q ss_pred CCCCccCHHHHHHHHHHHhcCch
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
-+.+++.+++.++++++.
T Consensus 329 -----~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 329 -----GDPEALAEAILRLLADPW 346 (377)
T ss_pred -----CCHHHHHHHHHHHhcCcH
Confidence 479999999999998875
No 60
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.97 E-value=7.5e-08 Score=95.96 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=84.9
Q ss_pred CcEEEEecCCCccC-CHHhHHHHHHHHHhCCCe-EEEEEeCCCCCCccccccccccCchhhHh---hhc--CCCeEeecc
Q 036436 277 RSVLFLCFGSLGSF-SSKQLKEMAIGLERSGVK-FLWVVRAPAPDSVENRSSLESLLPEGFLD---RTK--DRGLVVESW 349 (485)
Q Consensus 277 ~~~V~vs~GS~~~~-~~~~~~~i~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~--~~n~~v~~~ 349 (485)
++.|++++|..... ..+.+..++++++..... ++++..++.. ..+.+.+ +.. ..++.+.+.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~------------~~~~l~~~~~~~~~~~~~v~~~~~ 265 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR------------TRPRIREAGLEFLGHHPNVLLISP 265 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC------------hHHHHHHHHHhhccCCCCEEEECC
Confidence 44788888876633 345577788888776432 4444433210 0112222 111 357777666
Q ss_pred cch---HHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHH
Q 036436 350 APQ---VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQ 426 (485)
Q Consensus 350 ~p~---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (485)
.++ ..++..+++ +|+..| |.+.|++++|+|+|+++.. |. +..+.+. |+++.+.. +.++|.+
T Consensus 266 ~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~--------~~~~i~~ 329 (363)
T cd03786 266 LGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT--------DPEAILA 329 (363)
T ss_pred cCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC--------CHHHHHH
Confidence 554 356777888 999999 8888999999999998743 22 2233333 66655532 5889999
Q ss_pred HHHHHhcCch
Q 036436 427 RVSELMDSEK 436 (485)
Q Consensus 427 ai~~vl~~~~ 436 (485)
++.++++++.
T Consensus 330 ~i~~ll~~~~ 339 (363)
T cd03786 330 AIEKLLSDEF 339 (363)
T ss_pred HHHHHhcCch
Confidence 9999998875
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.96 E-value=1.4e-06 Score=86.28 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=90.4
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhCC-CeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchH---H
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERSG-VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQV---E 354 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~---~ 354 (485)
.+++..|+.. ....+..++++++... ..++++-.+. ....+.+-..+.....|+.+.+|+|+. .
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----------LEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 5677778865 2334566777777766 4444433221 011111101111124689999999974 4
Q ss_pred hhhccCcceEEe---ccCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHH
Q 036436 355 VLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSE 430 (485)
Q Consensus 355 lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~ 430 (485)
++..+++.++-+ +.|. .+++||+++|+|+|+....+....+.. +. +.|...+. -+.+++.++|.+
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-------~d~~~~~~~i~~ 328 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-------GDPAALAEAIRR 328 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-------CCHHHHHHHHHH
Confidence 777888833333 2344 479999999999999766555443322 13 77877765 369999999999
Q ss_pred HhcCch-HHHHHHHHHHHH
Q 036436 431 LMDSEK-GRAVKERAVAMK 448 (485)
Q Consensus 431 vl~~~~-~~~~~~~a~~l~ 448 (485)
+++|++ .+.+++++++..
T Consensus 329 l~~~~~~~~~~~~~~~~~~ 347 (357)
T cd03795 329 LLEDPELRERLGEAARERA 347 (357)
T ss_pred HHHCHHHHHHHHHHHHHHH
Confidence 999886 334444444433
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.94 E-value=1.8e-06 Score=84.35 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=64.8
Q ss_pred CCeEeecccc-hHHhhhccCcceEEeccC----chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 342 RGLVVESWAP-QVEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 342 ~n~~v~~~~p-~~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
.++.+.++.. ...++..+++ +|.... .++++||+++|+|+|+.+..+.+.. +.+.-..|..++.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~~~~g~~~~~----- 303 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIEDGVNGLLVPN----- 303 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhccCcceEEeCC-----
Confidence 4666767633 4568889998 776642 4789999999999998765544432 2234137877766
Q ss_pred CccCHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Q 036436 417 GLVSSAELEQRVSELMDSEK-GRAVKERAVAMK 448 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~ 448 (485)
.+.++++++|.++++|++ .+.++++++++.
T Consensus 304 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 304 --GDVEALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 468999999999999887 234444444433
No 63
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.89 E-value=1.7e-07 Score=93.61 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCeEeecccch---HHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCc
Q 036436 342 RGLVVESWAPQ---VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 342 ~n~~v~~~~p~---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
+++.+.+.+++ ..++..+++ +|+..|.. +.||+++|+|+|.++..++++. .+ +. |.+..+.
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~-~~-g~~~lv~-------- 318 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV-EA-GTNKLVG-------- 318 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH-hc-CceEEeC--------
Confidence 47777776654 456778887 99987644 7999999999999976665553 22 33 7776653
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 036436 419 VSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (485)
.++++|.+++.++++|++ .+++...-. ... .+++++.+.++.|.+
T Consensus 319 ~d~~~i~~ai~~ll~~~~---~~~~~~~~~---~~~-g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 319 TDKENITKAAKRLLTDPD---EYKKMSNAS---NPY-GDGEASERIVEELLN 363 (365)
T ss_pred CCHHHHHHHHHHHHhChH---HHHHhhhcC---CCC-cCchHHHHHHHHHHh
Confidence 378999999999998876 554433222 211 345666666665554
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.88 E-value=7.4e-06 Score=82.45 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=63.4
Q ss_pred CCCeEeecccchH---HhhhccCcceEEec---cC-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQV---EVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~---~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.+++|.. .++..+++ ++.. -| ..+++||+++|+|+|+.-..+ ....+. .-+.|..++.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~-~~~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVV-DGETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhc-cCCceEEeCC--
Confidence 3688999999875 46788888 6643 22 257899999999999975433 223343 3256766543
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAM 447 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l 447 (485)
+.++++++|.+++++++ .+.+.+++++.
T Consensus 350 ------~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 350 ------TPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ------CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 68899999999999885 34455555443
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.85 E-value=2.7e-05 Score=78.79 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=65.7
Q ss_pred CCeEeecccchH---HhhhccCcceEEec---cC-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCC
Q 036436 342 RGLVVESWAPQV---EVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (485)
Q Consensus 342 ~n~~v~~~~p~~---~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (485)
.++.+.++++.. .+|+.+++ +|.. .| ..+++||+++|+|+|+....+ ....+. .-+.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~-~~~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVA-DGETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhc-cCCceEECCC---
Confidence 578888998864 47889998 7742 33 358999999999999976533 333453 4367777765
Q ss_pred CCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 036436 415 GDGLVSSAELEQRVSELMDSEK-GRAVKERAVAM 447 (485)
Q Consensus 415 ~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l 447 (485)
-+.++++++|.++++|++ .+.+++++++.
T Consensus 353 ----~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 353 ----HDPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 368999999999998875 34455555543
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.83 E-value=2.9e-06 Score=82.20 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=71.3
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHHHH
Q 036436 12 GRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPALVY 91 (485)
Q Consensus 12 ~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (485)
..-|+.=|..+.++|.++| |+|.+.+-+.. .....+..+ ++.+..+.... .+....+.
T Consensus 9 ~p~hvhfFk~~I~eL~~~G--heV~it~R~~~-----~~~~LL~~y-----g~~y~~iG~~g----------~~~~~Kl~ 66 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRG--HEVLITARDKD-----ETEELLDLY-----GIDYIVIGKHG----------DSLYGKLL 66 (335)
T ss_pred CchHHHHHHHHHHHHHhCC--CEEEEEEeccc-----hHHHHHHHc-----CCCeEEEcCCC----------CCHHHHHH
Confidence 3349999999999999999 99999865432 334455544 77777776421 13333333
Q ss_pred HHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecc
Q 036436 92 ELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTT 144 (485)
Q Consensus 92 ~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~ 144 (485)
.... ....+..++++. +||++|+-. ++.+..+| .-+|||+|.+.-.
T Consensus 67 ~~~~-R~~~l~~~~~~~----~pDv~is~~-s~~a~~va-~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 67 ESIE-RQYKLLKLIKKF----KPDVAISFG-SPEAARVA-FGLGIPSIVFNDT 112 (335)
T ss_pred HHHH-HHHHHHHHHHhh----CCCEEEecC-cHHHHHHH-HHhCCCeEEEecC
Confidence 3322 234555666666 999999764 67788899 9999999998654
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.82 E-value=8.2e-06 Score=82.45 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCeEeecccchH---HhhhccCcceEEec---cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCC
Q 036436 342 RGLVVESWAPQV---EVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (485)
Q Consensus 342 ~n~~v~~~~p~~---~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (485)
.++.+.+|+|+. .+++.+++ +|.- -|. .+++||+++|+|+|+.+..+- ...+ +. |.+... .
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i-~~-~~~~~~-~--- 317 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVL-PP-DMILLA-E--- 317 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhe-eC-Cceeec-C---
Confidence 468888999754 47778888 6643 244 399999999999999776432 2233 23 433222 2
Q ss_pred CCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 415 GDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 415 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
.+.+++.+++.+++++.. -+ + .+.+..++.+++.-+-...++++++...+.
T Consensus 318 ----~~~~~l~~~l~~~l~~~~---~~-~--~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l 368 (398)
T cd03796 318 ----PDVESIVRKLEEAISILR---TG-K--HDPWSFHNRVKKMYSWEDVAKRTEKVYDRI 368 (398)
T ss_pred ----CCHHHHHHHHHHHHhChh---hh-h--hHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 368999999999997653 11 0 111222222233455555566655554443
No 68
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.80 E-value=9.7e-06 Score=80.20 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=62.6
Q ss_pred CCeEeecccc-hHHhhhccCcceEEec----cC-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 342 RGLVVESWAP-QVEVLNHESVGGFVTH----CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 342 ~n~~v~~~~p-~~~lL~~~~~~~~I~H----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
.++.+.+|.+ ...+|..+++ +|.- -| .++++||+++|+|+|+.-..+ ....+ ..-+.|..++.
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i-~~~~~g~~~~~---- 314 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETV-RPGETGLLVPP---- 314 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHH-hCCCceEEeCC----
Confidence 5788888854 3558889998 5542 23 369999999999999875432 33445 34257888766
Q ss_pred CCccCHHHHHHHHHHHhc-Cch-HHHHHHHHHHHHH
Q 036436 416 DGLVSSAELEQRVSELMD-SEK-GRAVKERAVAMKE 449 (485)
Q Consensus 416 ~~~~~~~~l~~ai~~vl~-~~~-~~~~~~~a~~l~~ 449 (485)
-+.+.+.++|..++. +++ .++++++|++..+
T Consensus 315 ---~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 315 ---GDAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred ---CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 379999999976664 443 3344445444443
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.80 E-value=1.2e-05 Score=79.50 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=63.4
Q ss_pred CCCeEeecccchHH---hhhccCcceEEecc---C-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.+|+++.+ ++..+++ +|... | .+++.||+++|+|+|+.+.. .....+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHh-hc-CceEEeCC--
Confidence 46788999999544 5788888 65432 2 46899999999999997543 344445 34 77766654
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAM 447 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l 447 (485)
+.+++.++|.++++|++ .+.+.+++++.
T Consensus 331 ------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45999999999999875 23344444444
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.78 E-value=3e-05 Score=79.44 Aligned_cols=111 Identities=11% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCCeEeecccchHH---hhhcc----CcceEEecc---C-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEE
Q 036436 341 DRGLVVESWAPQVE---VLNHE----SVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAV 409 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~----~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 409 (485)
..++.+.+++++.+ +++.+ ++ ||... | -.+++||+++|+|+|+....+ +...+ +.-..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHh-cCCCcEEEe
Confidence 34677778877655 46555 55 88654 4 359999999999999986533 33444 342468877
Q ss_pred eccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 036436 410 TRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 410 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
+. -++++++++|.++++|++ .+ +++++..++.+.+.-+-+..++++.+.
T Consensus 389 ~~-------~d~~~la~~i~~ll~~~~---~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l 437 (439)
T TIGR02472 389 DV-------LDLEAIASALEDALSDSS---QW---QLWSRNGIEGVRRHYSWDAHVEKYLRI 437 (439)
T ss_pred CC-------CCHHHHHHHHHHHHhCHH---HH---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76 368999999999998875 22 223333332222334544555555543
No 71
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.78 E-value=1e-05 Score=80.50 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=65.8
Q ss_pred CCCeEeecccchHH---hhhccCcceEEec----------cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEE
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTH----------CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGL 407 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~H----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 407 (485)
..++.+.+++|+.+ ++..+++ +|.. |-.++++||+++|+|+|+-+..+ +...+. .-+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~-~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVE-DGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhee-cCCeeE
Confidence 35788889998644 5888888 6642 23479999999999999877643 444553 337888
Q ss_pred EEeccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 036436 408 AVTRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVA 446 (485)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~ 446 (485)
.++. -+.+++.++|.++++|++ .+.+++++++
T Consensus 317 ~~~~-------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 317 LVPE-------GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EECC-------CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 7776 368999999999998876 2334444433
No 72
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.77 E-value=1.3e-05 Score=79.19 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=60.3
Q ss_pred CCCeEeecccchH---HhhhccCcceEEec----------cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEE
Q 036436 341 DRGLVVESWAPQV---EVLNHESVGGFVTH----------CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGL 407 (485)
Q Consensus 341 ~~n~~v~~~~p~~---~lL~~~~~~~~I~H----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 407 (485)
.+|+.+.+++|+. .++..+++ +|.. |.-++++||+++|+|+|+.+..+ ....+ +.-..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 3688899999754 47778888 6652 33479999999999999976532 22344 3424787
Q ss_pred EEeccCCCCCccCHHHHHHHHHHHhcCch
Q 036436 408 AVTRSEEGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
.++. -+.+++.++|.++++|+.
T Consensus 308 ~~~~-------~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 308 LVPP-------GDPEALADAIERLLDDPE 329 (355)
T ss_pred EeCC-------CCHHHHHHHHHHHHhCHH
Confidence 7765 368999999999998876
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.77 E-value=6.3e-06 Score=80.55 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=56.7
Q ss_pred CCCeEeecccch-HHhhhccCcceEEec----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 341 ~~n~~v~~~~p~-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
..++.+.++.+. ..++..+++ +|.- |..++++||+++|+|+|+.... .....+. .-+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~-~~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILE-DGENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhc-CCCceEEECCC---
Confidence 357778888765 458889998 6643 3356899999999999986544 4445563 44778888763
Q ss_pred CCccCHHHH---HHHHHHHhcCch
Q 036436 416 DGLVSSAEL---EQRVSELMDSEK 436 (485)
Q Consensus 416 ~~~~~~~~l---~~ai~~vl~~~~ 436 (485)
+.+.+ .+.+..++.+++
T Consensus 315 ----~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 315 ----DEAALAAAALALLDLLLDPE 334 (353)
T ss_pred ----CHHHHHHHHHHHHhccCChH
Confidence 56666 556666666554
No 74
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.75 E-value=3.2e-05 Score=76.70 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCeEeecccc-hH---HhhhccCcceEEecc----CchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 342 RGLVVESWAP-QV---EVLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 342 ~n~~v~~~~p-~~---~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
.++.+.+|++ +. .++..+++ +|... ..++++||+++|+|+|+....+ ....+. .-+.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~-~~~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVD-HGVTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----Chhhee-CCCceEEeCC--
Confidence 4677889988 43 46888998 88753 3579999999999999875432 222332 3246776665
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
.+.+++.+++.++++|++ .+.+.+++++..+ +.-+.++..+++++...
T Consensus 315 -----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 -----GDPEDLAEGIEWLLADPDEREELGEAARELAE-------NEFDSRVQAKRYLSLYE 363 (365)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHHh
Confidence 468999999999998876 2334444443332 23455566666666554
No 75
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.75 E-value=1.6e-05 Score=78.71 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=55.6
Q ss_pred CCeEeecccch-HHhhhccCcceEEeccC----chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 342 RGLVVESWAPQ-VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 342 ~n~~v~~~~p~-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
.++.+.++..+ ..++..+++ +|.-.. .++++||+++|+|+|+. |...+...+. . .|..+..
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~-~--~g~~~~~----- 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVG-D--SGLIVPI----- 310 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEec-C--CceEeCC-----
Confidence 46878787654 568999998 665432 57899999999999975 4444555553 3 4555554
Q ss_pred CccCHHHHHHHHHHHhcCc
Q 036436 417 GLVSSAELEQRVSELMDSE 435 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~ 435 (485)
-+.+++++++.++++++
T Consensus 311 --~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 --SDPEALANKIDEILKMS 327 (360)
T ss_pred --CCHHHHHHHHHHHHhCC
Confidence 37899999999999543
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.74 E-value=2.2e-05 Score=77.63 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCCeEeec-ccch---HHhhhccCcceEEec------cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEe
Q 036436 341 DRGLVVES-WAPQ---VEVLNHESVGGFVTH------CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (485)
Q Consensus 341 ~~n~~v~~-~~p~---~~lL~~~~~~~~I~H------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (485)
..++.+.+ |+|+ ..++..+++ +|.. |-.++++||+++|+|+|+.+..+ ...+.+. +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 35777765 4875 457788888 6632 33468999999999999987654 2223233 7777777
Q ss_pred ccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 036436 411 RSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 411 ~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
. -+.+++.+++.++++|++ .+.+++++++..+. -+-+..++++.+.
T Consensus 318 ~-------~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~~~~ 364 (366)
T cd03822 318 P-------GDPAALAEAIRRLLADPELAQALRARAREYARA--------MSWERVAERYLRL 364 (366)
T ss_pred C-------CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh--------CCHHHHHHHHHHH
Confidence 6 368999999999999865 33444444444332 3444555555543
No 77
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=4.1e-05 Score=74.58 Aligned_cols=332 Identities=15% Similarity=0.093 Sum_probs=178.4
Q ss_pred CCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHH
Q 036436 10 SPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPAL 89 (485)
Q Consensus 10 ~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~ 89 (485)
.-+-|-++-.++|.++|.++-|++.+++.|.++- .. +.+... ....+....+|.+..
T Consensus 56 aaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~T-----g~-e~a~~~--~~~~v~h~YlP~D~~--------------- 112 (419)
T COG1519 56 AASVGEVLAALPLVRALRERFPDLRILVTTMTPT-----GA-ERAAAL--FGDSVIHQYLPLDLP--------------- 112 (419)
T ss_pred ecchhHHHHHHHHHHHHHHhCCCCCEEEEecCcc-----HH-HHHHHH--cCCCeEEEecCcCch---------------
Confidence 3467889999999999999977788888764321 11 112211 112366666664311
Q ss_pred HHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhH--HHHhhhcCCceEEEecchhHhHhHHhhhcccccccCcccc
Q 036436 90 VYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAF--QVSSSTLSIPTYYYFTTAGSVLAANLYLPTLHKNTTKSFR 167 (485)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~--~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 167 (485)
..+...++.+ +||++|.-....|-. .-+ ++.|||.+.+.- =
T Consensus 113 ---------~~v~rFl~~~----~P~l~Ii~EtElWPnli~e~-~~~~~p~~LvNa-R---------------------- 155 (419)
T COG1519 113 ---------IAVRRFLRKW----RPKLLIIMETELWPNLINEL-KRRGIPLVLVNA-R---------------------- 155 (419)
T ss_pred ---------HHHHHHHHhc----CCCEEEEEeccccHHHHHHH-HHcCCCEEEEee-e----------------------
Confidence 1334556667 999988655555533 366 899999997632 0
Q ss_pred ccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhh-hcccceEEEcCchhhHHHHHHHHHhcccCCCCCCCCee
Q 036436 168 ELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQ-MAKSAGIIVNTFELLQERAIKAMLEGQCIPGETLPPLY 246 (485)
Q Consensus 168 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 246 (485)
+.++.-..+..+-...+. +..-+.++.-+-.+-+. +.+- + .+++.
T Consensus 156 -----------------------LS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~R-----f~~L----G--a~~v~ 201 (419)
T COG1519 156 -----------------------LSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQR-----FRSL----G--AKPVV 201 (419)
T ss_pred -----------------------echhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHH-----HHhc----C--CcceE
Confidence 001111111222122222 33445566555444333 2221 1 14588
Q ss_pred eeCCccCCCCCCCCCCCcc---cccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCC--CeEEEEEeCCCCCCc
Q 036436 247 CIGPVVGRGNGENRGRDRH---ECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSG--VKFLWVVRAPAPDSV 321 (485)
Q Consensus 247 ~vGpl~~~~~~~~~~~~~~---~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~~~ 321 (485)
.+|-+=.+-.... .... .+...+... + .+.|..+|.. -+.+.+-++..++.+.. ...||+-+=+...+.
T Consensus 202 v~GNlKfd~~~~~--~~~~~~~~~r~~l~~~--r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~ 275 (419)
T COG1519 202 VTGNLKFDIEPPP--QLAAELAALRRQLGGH--R-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPERFKA 275 (419)
T ss_pred EecceeecCCCCh--hhHHHHHHHHHhcCCC--C-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChhhHHH
Confidence 8887754433211 1122 233333332 2 5667666643 23333455555555543 445554322210000
Q ss_pred cccccccccCchhhHhhh----cCCCeEeecccc-hHHhhhccCcc----eEEeccCchhhHHhhhcCCcEEecccccch
Q 036436 322 ENRSSLESLLPEGFLDRT----KDRGLVVESWAP-QVEVLNHESVG----GFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392 (485)
Q Consensus 322 ~~~~~~~~~lp~~~~~~~----~~~n~~v~~~~p-~~~lL~~~~~~----~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 392 (485)
....-....+.-....+. .+.++++.+-+- ...+++-+++. -++.+||+| .+|.+++|+|+|.=|+...|
T Consensus 276 v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf 354 (419)
T COG1519 276 VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNF 354 (419)
T ss_pred HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccH
Confidence 000000000100000000 122455544433 34455555541 145699998 68999999999999999999
Q ss_pred hHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHH
Q 036436 393 KMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAA 452 (485)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~ 452 (485)
.+.++++.+ -|.|+.++. .+.+.++++.+++|++ .++|.+++.++-+..+
T Consensus 355 ~ei~~~l~~-~ga~~~v~~---------~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 355 SDIAERLLQ-AGAGLQVED---------ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred HHHHHHHHh-cCCeEEECC---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999964 499998876 4678888888888765 4566666666655544
No 78
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.66 E-value=2.7e-05 Score=77.05 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCCeEeecccch-HHhhhccCcceEEec----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 341 ~~n~~v~~~~p~-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
..++.+.++..+ ..++..+++ +|.- |-..+++||+++|+|+|+....+- ...+ +. +.|..+..
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhh-cc-CccEEeCC----
Confidence 356777787544 568889998 6654 445799999999999998765442 2334 34 55555543
Q ss_pred CCccCHHHHHHHHHHHhcCch
Q 036436 416 DGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 416 ~~~~~~~~l~~ai~~vl~~~~ 436 (485)
-++++++++|.++++|++
T Consensus 316 ---~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 316 ---ESPEIWAEEILKLKSEDR 333 (358)
T ss_pred ---CCHHHHHHHHHHHHhCcc
Confidence 368999999999999997
No 79
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.64 E-value=0.00037 Score=74.62 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCeEeeccc-c---hHHhhhc-cC-cceEEec---cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEec
Q 036436 342 RGLVVESWA-P---QVEVLNH-ES-VGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTR 411 (485)
Q Consensus 342 ~n~~v~~~~-p---~~~lL~~-~~-~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (485)
.++.+.++. + ...++.+ ++ .++||.- =|. .|++||+++|+|+|+.-..+ ....|. .-..|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~-dg~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQ-DGVSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhc-CCCcEEEeCC
Confidence 456666664 3 2345543 22 2237753 233 59999999999999975543 444453 4256888887
Q ss_pred cCCCCCccCHHHHHHHHHHHh----cCch-HHHHHHHHH
Q 036436 412 SEEGDGLVSSAELEQRVSELM----DSEK-GRAVKERAV 445 (485)
Q Consensus 412 ~~~~~~~~~~~~l~~ai~~vl----~~~~-~~~~~~~a~ 445 (485)
. ++++++++|.+++ .|++ .+.+.++++
T Consensus 694 ~-------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 694 Y-------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred C-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 5888999998876 4665 344444443
No 80
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.64 E-value=0.00016 Score=71.07 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=56.8
Q ss_pred CCeEeecccc-hHHhhhccCcceEEeccC----chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 342 RGLVVESWAP-QVEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 342 ~n~~v~~~~p-~~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
.++.+.+..+ ...++..+++ +|.... .+++.||+++|+|+|+... ..+...+. . .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~-~--~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVG-D--TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhh-c--CCEEeCC-----
Confidence 3566655444 4568899998 886544 3799999999999998543 33444443 3 5666655
Q ss_pred CccCHHHHHHHHHHHhcCch
Q 036436 417 GLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~~ 436 (485)
-+.+++.+++.++++|++
T Consensus 317 --~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 317 --GDPEALAEAIEALLADPA 334 (365)
T ss_pred --CCHHHHHHHHHHHHhChH
Confidence 368999999999998875
No 81
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.58 E-value=0.00046 Score=75.70 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=73.8
Q ss_pred CCCeEeecccchHH---hhhccC--cceEEec---cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEec
Q 036436 341 DRGLVVESWAPQVE---VLNHES--VGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTR 411 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~--~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (485)
..+|.+.+++++.+ ++..++ .++||.- =|. .+++||+++|+|+|+....+ ....+ +.-..|..++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEECC
Confidence 35677778887655 555552 1238875 344 58999999999999986543 22233 23256888877
Q ss_pred cCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 412 SEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 412 ~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
-+++.|+++|.++++|++ ...+.+++++..+. -+-...++.+++.+...
T Consensus 622 -------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~--------FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 622 -------HDQQAIADALLKLVADKQLWAECRQNGLKNIHL--------FSWPEHCKTYLSRIASC 671 (1050)
T ss_pred -------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHH
Confidence 468999999999999886 34555555544332 33335555555554444
No 82
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.58 E-value=9.7e-05 Score=74.62 Aligned_cols=109 Identities=21% Similarity=0.157 Sum_probs=73.2
Q ss_pred CCCeEeecccch-HHhhhccCcceEE--ec--cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCC
Q 036436 341 DRGLVVESWAPQ-VEVLNHESVGGFV--TH--CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (485)
Q Consensus 341 ~~n~~v~~~~p~-~~lL~~~~~~~~I--~H--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (485)
..|+.+.+++++ ..++..+++ +| ++ .|. +.++||+++|+|+|+.+...+.. . ..-|.|..+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~--~- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA--A- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC--C-
Confidence 468888899885 458889998 66 32 354 46999999999999998643321 1 1226777664 3
Q ss_pred CCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 036436 415 GDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (485)
Q Consensus 415 ~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (485)
++++++++|.++++|++ .+.+.+++++.. .+.-+-++.++.+.+.+
T Consensus 348 -----~~~~la~ai~~ll~~~~~~~~~~~~ar~~v-------~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 348 -----DPADFAAAILALLANPAEREELGQAARRRV-------LQHYHWPRNLARLDALL 394 (397)
T ss_pred -----CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHh
Confidence 68999999999998876 234444444432 22345556666666554
No 83
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.54 E-value=1.4e-06 Score=85.16 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=103.2
Q ss_pred CCeeeeC-CccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCe-EEEEEeCCCCCC
Q 036436 243 PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVK-FLWVVRAPAPDS 320 (485)
Q Consensus 243 ~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~-~i~~~~~~~~~~ 320 (485)
.++.||| |+...-.. .... ++ ++++|.+--||-...-...+..++++.+..... .++.+....
T Consensus 144 ~~~~~VGhPl~d~~~~-----~~~~----~~---~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--- 208 (347)
T PRK14089 144 SKATYVGHPLLDEIKE-----FKKD----LD---KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--- 208 (347)
T ss_pred CCCEEECCcHHHhhhh-----hhhh----cC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC---
Confidence 5688999 77653211 1111 22 224888989988633334444344555443321 233332220
Q ss_pred ccccccccccCchhhHhhhcC-CCeEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc--cchhHHHH
Q 036436 321 VENRSSLESLLPEGFLDRTKD-RGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY--AEQKMIKA 397 (485)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~-~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~--~DQ~~na~ 397 (485)
+ . +.+.+.+.. ..+.+.+ ...+++..+++ +|+-.|..|+ |+..+|+|||+ ++- .-|+.||+
T Consensus 209 -----~----~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak 272 (347)
T PRK14089 209 -----K----G-KDLKEIYGDISEFEISY--DTHKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAK 272 (347)
T ss_pred -----c----H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHH
Confidence 0 0 122222211 1222222 34568999999 9999999999 99999999999 553 47889999
Q ss_pred HHHH--hhceEEEE-------------eccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 036436 398 VVVE--EMKVGLAV-------------TRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSR 462 (485)
Q Consensus 398 ~v~~--~~G~G~~l-------------~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (485)
++.. ..|..-.+ -.++ .|++.|.+++.+ ... +.+++...++++.+. . |+++
T Consensus 273 ~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~-----~t~~~la~~i~~-~~~---~~~~~~~~~l~~~l~----~-~a~~ 338 (347)
T PRK14089 273 MFVKLKHIGLANIFFDFLGKEPLHPELLQEF-----VTVENLLKAYKE-MDR---EKFFKKSKELREYLK----H-GSAK 338 (347)
T ss_pred HHHcCCeeehHHHhcCCCcccccCchhhccc-----CCHHHHHHHHHH-HHH---HHHHHHHHHHHHHhc----C-CHHH
Confidence 9851 33444333 2234 899999999987 211 124555555555443 3 5555
Q ss_pred HHHHHHH
Q 036436 463 VALDNLV 469 (485)
Q Consensus 463 ~~~~~l~ 469 (485)
++.+.+.
T Consensus 339 ~~A~~i~ 345 (347)
T PRK14089 339 NVAKILK 345 (347)
T ss_pred HHHHHHh
Confidence 6655544
No 84
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.54 E-value=0.00033 Score=70.02 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=71.2
Q ss_pred CCeEeecccc-hHHhhhccCcceEEe--c--cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 342 RGLVVESWAP-QVEVLNHESVGGFVT--H--CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 342 ~n~~v~~~~p-~~~lL~~~~~~~~I~--H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
.++.+.++.. ...++..+++ +|. + |-..+++||+++|+|+|+....+ +...+. .-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~-~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQ-HGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhc-CCCceEEeCC-----
Confidence 3455555544 3568999999 663 3 34579999999999999976533 344453 4256877776
Q ss_pred CccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 417 GLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
-+.++++++|.++++|++ .+.+.+++++.. .+.-+.+..++++++...
T Consensus 323 --~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~-------~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 323 --GDAVALARALQPYVSDPAARRAHGAAGRARA-------EQQFSINAMVAAYAGLYD 371 (374)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHH
Confidence 368999999999998775 223333433322 223455556666655543
No 85
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.54 E-value=1.2e-06 Score=86.13 Aligned_cols=133 Identities=10% Similarity=0.163 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCccCC-H---HhHHHHHHHHHhC-CCeEEEEEeCCCCCCccccccccccCchhhHhhhcC-CCeEeec
Q 036436 275 PSRSVLFLCFGSLGSFS-S---KQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKD-RGLVVES 348 (485)
Q Consensus 275 ~~~~~V~vs~GS~~~~~-~---~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~n~~v~~ 348 (485)
.+++.++|++=...+.. + ..+.+++.++... +.++||.+.+.. ... ..+.+.++. +|+++..
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p--------~~~----~~i~~~l~~~~~v~~~~ 245 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP--------RGS----DIIIEKLKKYDNVRLIE 245 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H--------HHH----HHHHHHHTT-TTEEEE-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc--------hHH----HHHHHHhcccCCEEEEC
Confidence 45669999985555444 3 3455566666666 778999886430 001 122222221 3888776
Q ss_pred ccc---hHHhhhccCcceEEeccCchhhH-HhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHH
Q 036436 349 WAP---QVEVLNHESVGGFVTHCGWNSVL-EGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAEL 424 (485)
Q Consensus 349 ~~p---~~~lL~~~~~~~~I~HgG~gs~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l 424 (485)
.++ +..+|.++++ +|+..| ++. ||.+.|+|.|.+ -|+...=.-+ +. |..+.+. .+.++|
T Consensus 246 ~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r-~~-~~nvlv~--------~~~~~I 308 (346)
T PF02350_consen 246 PLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR-ER-GSNVLVG--------TDPEAI 308 (346)
T ss_dssp ---HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH-HT-TSEEEET--------SSHHHH
T ss_pred CCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH-hh-cceEEeC--------CCHHHH
Confidence 665 5668889999 999999 555 999999999999 3333333333 23 6666633 479999
Q ss_pred HHHHHHHhcCch
Q 036436 425 EQRVSELMDSEK 436 (485)
Q Consensus 425 ~~ai~~vl~~~~ 436 (485)
.+++.+++++.+
T Consensus 309 ~~ai~~~l~~~~ 320 (346)
T PF02350_consen 309 IQAIEKALSDKD 320 (346)
T ss_dssp HHHHHHHHH-HH
T ss_pred HHHHHHHHhChH
Confidence 999999997643
No 86
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.52 E-value=4.6e-05 Score=78.43 Aligned_cols=189 Identities=12% Similarity=0.091 Sum_probs=100.2
Q ss_pred CCeeeeC-CccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHH--hC--CCeEEEEEeCCC
Q 036436 243 PPLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLE--RS--GVKFLWVVRAPA 317 (485)
Q Consensus 243 ~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~--~~--~~~~i~~~~~~~ 317 (485)
-++.||| |+...-... ....+..+.+.-.+++++|-+--||-...=...+-.++++.+ .. +.+|++.....
T Consensus 381 v~v~yVGHPL~d~i~~~---~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~- 456 (608)
T PRK01021 381 LRTVYLGHPLVETISSF---SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP- 456 (608)
T ss_pred CCeEEECCcHHhhcccC---CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch-
Confidence 5899999 887653311 122223333333334568999999976322233444666665 33 34554433221
Q ss_pred CCCccccccccccCchhhHhhhcCCC---eEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc-ccchh
Q 036436 318 PDSVENRSSLESLLPEGFLDRTKDRG---LVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL-YAEQK 393 (485)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~n---~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~-~~DQ~ 393 (485)
. ..+.+.+.....+ +.+..--...+++..|++ .+.-.|- -|+|+..+|+|||++=- ..=-+
T Consensus 457 ---------~---~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty 521 (608)
T PRK01021 457 ---------K---YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDT 521 (608)
T ss_pred ---------h---hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHH
Confidence 0 0112222221111 122110012578999998 8887775 46899999999999632 22233
Q ss_pred HHHHHHHH-----------hhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHH
Q 036436 394 MIKAVVVE-----------EMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAA 452 (485)
Q Consensus 394 ~na~~v~~-----------~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~ 452 (485)
..++++.+ -+|-.+....-. |....|++.|.+++ ++|.|++ .+.+++..+++++.+.
T Consensus 522 ~Iak~Lvki~i~yIsLpNIIagr~VvPEllq-gQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 522 FLAKYIFKIILPAYSLPNIILGSTIFPEFIG-GKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred HHHHHHHhccCCeeehhHHhcCCCcchhhcC-CcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 45566542 011111111110 01228999999997 8888775 3456666666666553
No 87
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.51 E-value=0.00022 Score=72.17 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCCeEeecccchHH---hhhccCcceEEec---------cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEE
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTH---------CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGL 407 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~H---------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 407 (485)
.+++.+.+|+|+.+ ++..+++ +|.- -|. ++++||+++|+|+|+....+ ....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 35788989999754 6778888 7753 344 57899999999999975543 33344 3425787
Q ss_pred EEeccCCCCCccCHHHHHHHHHHHhc-Cch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 408 AVTRSEEGDGLVSSAELEQRVSELMD-SEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~ai~~vl~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
.++. -+.++++++|.++++ |++ .+.+.+++++.. .+.-+.+...+++.+.+++
T Consensus 351 lv~~-------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v-------~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVPE-------NDAQALAQRLAAFSQLDTDELAPVVKRAREKV-------ETDFNQQVINRELASLLQA 405 (406)
T ss_pred EeCC-------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------HHhcCHHHHHHHHHHHHhh
Confidence 7776 369999999999998 775 233444443332 2345556777777776654
No 88
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.49 E-value=7e-07 Score=73.34 Aligned_cols=121 Identities=20% Similarity=0.248 Sum_probs=80.9
Q ss_pred EEEEecCCCccCC---HHhHHHHHHHHHhCCC-eEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeE--eecccch
Q 036436 279 VLFLCFGSLGSFS---SKQLKEMAIGLERSGV-KFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLV--VESWAPQ 352 (485)
Q Consensus 279 ~V~vs~GS~~~~~---~~~~~~i~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~--v~~~~p~ 352 (485)
.+|||-||....+ .-.-.+.++.|.+.|. +.|+..+.... ..++....-.+..++. ..+|.|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-----------~~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-----------FFGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-----------CCCCHHHhhcccCCeEEEEEecCcc
Confidence 7999999987211 0112336677777774 67777876410 0111111111223343 4467775
Q ss_pred -HHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc----ccchhHHHHHHHHhhceEEEEeccC
Q 036436 353 -VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----YAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 353 -~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
.+..+.+++ +|+|+|.||++|.|..|+|.|+++- -..|-..|..+++. |.=..-..+.
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ps~ 136 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTPST 136 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeeccc
Confidence 556777999 9999999999999999999999994 46899999999744 7666655543
No 89
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.49 E-value=5.6e-05 Score=75.25 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=86.0
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhCCCeE-EEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeecccch--HH
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKF-LWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAPQ--VE 354 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~n~~v~~~~p~--~~ 354 (485)
.+++..|.........+..+++++......+ ++.+|... ..+.+ ....+.. ...++.+.+|+++ ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~---------~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~ 250 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS---------DFEKC-KAYSRELGIEQRIIWHGWQSQPWEV 250 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc---------cHHHH-HHHHHHcCCCCeEEEecccCCcHHH
Confidence 5566677765323344666777776653222 33344320 01111 1111111 1457888898753 22
Q ss_pred ---hhhccCcceEEec----cCchhhHHhhhcCCcEEecc-cccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHH
Q 036436 355 ---VLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWP-LYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQ 426 (485)
Q Consensus 355 ---lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (485)
.+..+++ +|.. |-..+++||+++|+|+|+.- ..+ ....+ +.-..|..++. -+.+++++
T Consensus 251 ~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~-------~d~~~la~ 316 (359)
T PRK09922 251 VQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP-------GNIDEFVG 316 (359)
T ss_pred HHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC-------CCHHHHHH
Confidence 3445677 6653 33579999999999999875 332 22344 34357877766 47999999
Q ss_pred HHHHHhcCch---HHHHHHHHHHHHH
Q 036436 427 RVSELMDSEK---GRAVKERAVAMKE 449 (485)
Q Consensus 427 ai~~vl~~~~---~~~~~~~a~~l~~ 449 (485)
+|.++++|++ .+.++++++++.+
T Consensus 317 ~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 317 KLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 9999999886 2344444444444
No 90
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.48 E-value=0.00029 Score=69.75 Aligned_cols=154 Identities=17% Similarity=0.213 Sum_probs=83.1
Q ss_pred EEecCCCccCCHHhHHHHHHHHHhCC--CeEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeecccchHH---
Q 036436 281 FLCFGSLGSFSSKQLKEMAIGLERSG--VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAPQVE--- 354 (485)
Q Consensus 281 ~vs~GS~~~~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~n~~v~~~~p~~~--- 354 (485)
++..|+.. ....+..++++++... .+++ .+|.... ...+-+.+.+.. ..+++.+.+++++.+
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~-ivG~~~~---------~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~ 263 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLV-IVGNADH---------NTPYGKLLKEKAAADPRIIFVGPIYDQELLE 263 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEE-EEcCCCC---------cchHHHHHHHHhCCCCcEEEccccChHHHHH
Confidence 44568775 2233556667776654 4443 3443210 001111111111 246899999998865
Q ss_pred hhhccCcceEEeccCc-----hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHH
Q 036436 355 VLNHESVGGFVTHCGW-----NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVS 429 (485)
Q Consensus 355 lL~~~~~~~~I~HgG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~ 429 (485)
++..+++ ++.+.-. ++++||+++|+|+|+....+. ...+ +. .|...+.. +. +++++.
T Consensus 264 ~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~-~~--~g~~~~~~-------~~--l~~~i~ 325 (363)
T cd04955 264 LLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVL-GD--KAIYFKVG-------DD--LASLLE 325 (363)
T ss_pred HHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceee-cC--CeeEecCc-------hH--HHHHHH
Confidence 5666777 6554332 579999999999998765421 1122 12 23333332 12 999999
Q ss_pred HHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 036436 430 ELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 430 ~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
++++|++ ...+.+++++ .+.+.-+-+...+++++.
T Consensus 326 ~l~~~~~~~~~~~~~~~~-------~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 326 ELEADPEEVSAMAKAARE-------RIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHhCHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHH
Confidence 9998875 2223333332 222234545566666554
No 91
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.48 E-value=1e-05 Score=80.47 Aligned_cols=130 Identities=10% Similarity=0.180 Sum_probs=79.5
Q ss_pred CcEEEEecCCCc---cCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCeEeecccc-
Q 036436 277 RSVLFLCFGSLG---SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP- 351 (485)
Q Consensus 277 ~~~V~vs~GS~~---~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~n~~v~~~~p- 351 (485)
++.|+|++=... ....+.+..+++++...+..++++.+..... ...+-+.+..... .+|+.+.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~--------~~~i~~~i~~~~~~~~~v~l~~~l~~ 272 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG--------SRIINEAIEEYVNEHPNFRLFKSLGQ 272 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC--------chHHHHHHHHHhcCCCCEEEECCCCh
Confidence 348888875432 2345679999999988876666665432000 0001111111111 35788776554
Q ss_pred --hHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHH
Q 036436 352 --QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVS 429 (485)
Q Consensus 352 --~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~ 429 (485)
...++.++++ +|+..+.|. .||.+.|+|.|.+- +.+ .-+ +. |..+.+-. .++++|.+++.
T Consensus 273 ~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~-g~nvl~vg-------~~~~~I~~a~~ 334 (365)
T TIGR03568 273 ERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LR-ADSVIDVD-------PDKEEIVKAIE 334 (365)
T ss_pred HHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hh-cCeEEEeC-------CCHHHHHHHHH
Confidence 5668889999 999886655 89999999999874 311 111 12 43333222 47899999999
Q ss_pred HHh
Q 036436 430 ELM 432 (485)
Q Consensus 430 ~vl 432 (485)
+++
T Consensus 335 ~~~ 337 (365)
T TIGR03568 335 KLL 337 (365)
T ss_pred HHh
Confidence 955
No 92
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.46 E-value=0.0003 Score=68.83 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=76.4
Q ss_pred EEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh--cCCCeEeecccchH---H
Q 036436 280 LFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT--KDRGLVVESWAPQV---E 354 (485)
Q Consensus 280 V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~n~~v~~~~p~~---~ 354 (485)
+++..|... .......++++++..+.+++++-.+.. ...+ ....... ...++.+.+++++. .
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~----------~~~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~ 239 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD----------PDYF-YREIAPELLDGPDIEYLGEVGGAEKAE 239 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC----------HHHH-HHHHHHhcccCCcEEEeCCCCHHHHHH
Confidence 444557664 233356677888888877665443320 0000 1111111 14689999999875 4
Q ss_pred hhhccCcceEEe--ccCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHH
Q 036436 355 VLNHESVGGFVT--HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 355 lL~~~~~~~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~v 431 (485)
+++.+++-++-+ +-|. .+++||+++|+|+|+....+ +...+ +.-..|..++ ..+++.+++.++
T Consensus 240 ~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i-~~~~~g~l~~---------~~~~l~~~l~~l 305 (335)
T cd03802 240 LLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVV-EDGVTGFLVD---------SVEELAAAVARA 305 (335)
T ss_pred HHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhhe-eCCCcEEEeC---------CHHHHHHHHHHH
Confidence 688888833222 2343 58999999999999876532 22333 3412565542 278899999988
Q ss_pred hcCc
Q 036436 432 MDSE 435 (485)
Q Consensus 432 l~~~ 435 (485)
++.+
T Consensus 306 ~~~~ 309 (335)
T cd03802 306 DRLD 309 (335)
T ss_pred hccH
Confidence 7543
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=0.0012 Score=70.61 Aligned_cols=112 Identities=15% Similarity=0.201 Sum_probs=72.6
Q ss_pred CCCeEeecccch-HHhhhccCcceEEe---ccCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 341 DRGLVVESWAPQ-VEVLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 341 ~~n~~v~~~~p~-~~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
.++|.+.+|.+. ..++..+++ ||. +.|. ++++||+++|+|+|+....+ ....| +.-..|..++...
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV-~dg~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAV-QEGVTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHc-cCCCCEEEeCCCC--
Confidence 357888888875 458889998 765 4554 79999999999999976532 33445 3424788888766
Q ss_pred CCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 036436 416 DGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 416 ~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
.+.+++.+++.+++.+.. ...+++++++..+ +.-+-...++.+++.
T Consensus 644 ---~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~l 690 (694)
T PRK15179 644 ---VTAPDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRC 690 (694)
T ss_pred ---CChHHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHH
Confidence 677788888877765332 1225555544432 234444555555443
No 94
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.43 E-value=4.9e-05 Score=74.79 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=102.7
Q ss_pred CCeeeeC-CccCCCCCCCCCCCccccccc-ccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHh---C--CCeEEEEEeC
Q 036436 243 PPLYCIG-PVVGRGNGENRGRDRHECLSW-LDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLER---S--GVKFLWVVRA 315 (485)
Q Consensus 243 ~~~~~vG-pl~~~~~~~~~~~~~~~~~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~---~--~~~~i~~~~~ 315 (485)
-++.||| |+...-... .......+. ++. ++++|.+--||-...=...+..++++.+. . +..|++..-.
T Consensus 153 ~~~~~VGHPl~d~~~~~---~~~~~~~~~~l~~--~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~ 227 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKPE---PDRAEAREKLLDP--DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP 227 (373)
T ss_pred CCeEEECCcchhhhccC---CCHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5799999 887654432 112222222 343 44589999998762222223334455433 2 3455544422
Q ss_pred CCCCCccccccccccCchhhHhhh--cCCCeEee-cccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccc-cc
Q 036436 316 PAPDSVENRSSLESLLPEGFLDRT--KDRGLVVE-SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY-AE 391 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~--~~~n~~v~-~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~-~D 391 (485)
. . ..+-+.... ...++.+. ..-.-.++|..+++ .+.-.|- .|+|+..+|+|||++=-. .=
T Consensus 228 ~----------~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~l 291 (373)
T PF02684_consen 228 E----------V---HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPL 291 (373)
T ss_pred H----------H---HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHH
Confidence 1 0 001011110 11122221 22345668888988 6666664 578999999999998432 23
Q ss_pred hhHHHHHHHHhhce-E-----------EEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCC
Q 036436 392 QKMIKAVVVEEMKV-G-----------LAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGG 459 (485)
Q Consensus 392 Q~~na~~v~~~~G~-G-----------~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g 459 (485)
-+..|+++. +... | -.+-..+ .|++.|.+++.+++.|++ .++..+...+.+.+....+.
T Consensus 292 t~~iak~lv-k~~~isL~Niia~~~v~PEliQ~~-----~~~~~i~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~ 362 (373)
T PF02684_consen 292 TYFIAKRLV-KVKYISLPNIIAGREVVPELIQED-----ATPENIAAELLELLENPE---KRKKQKELFREIRQLLGPGA 362 (373)
T ss_pred HHHHHHHhh-cCCEeechhhhcCCCcchhhhccc-----CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhhhhcc
Confidence 445566664 2232 1 1111123 899999999999999987 45555555555555544555
Q ss_pred cH
Q 036436 460 SS 461 (485)
Q Consensus 460 ~~ 461 (485)
++
T Consensus 363 ~~ 364 (373)
T PF02684_consen 363 SS 364 (373)
T ss_pred CC
Confidence 54
No 95
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.38 E-value=0.00014 Score=71.91 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=56.9
Q ss_pred CCCeEeecccchH---HhhhccCcceEEec----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQV---EVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~---~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.+|+|+. .++..+++ +|.. |..++++||+++|+|+|+....+ ....+ . ..|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~--~~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-G--DAALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-c--CceeeeCC--
Confidence 4688888999875 46778888 5543 33468999999999999865422 11122 1 34555555
Q ss_pred CCCCccCHHHHHHHHHHHhcCch
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
-+.+++.+++.++++|++
T Consensus 321 -----~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 321 -----LDPEALAAAIERLLEDPA 338 (365)
T ss_pred -----CCHHHHHHHHHHHhcCHH
Confidence 368999999999998887
No 96
>PLN00142 sucrose synthase
Probab=98.38 E-value=0.00075 Score=72.46 Aligned_cols=90 Identities=11% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCeEeec----ccchHHhhh----ccCcceEEec---cCch-hhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEE
Q 036436 342 RGLVVES----WAPQVEVLN----HESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAV 409 (485)
Q Consensus 342 ~n~~v~~----~~p~~~lL~----~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 409 (485)
.++.+.+ ..+..++.. .+++ ||.- -|.| +++||+++|+|+|+....+ ....| +.-..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV-~dG~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEII-VDGVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEe
Confidence 3455443 333445554 2345 7764 4554 8999999999999875533 33445 342468888
Q ss_pred eccCCCCCccCHHHHHHHHHHH----hcCch-HHHHHHHHH
Q 036436 410 TRSEEGDGLVSSAELEQRVSEL----MDSEK-GRAVKERAV 445 (485)
Q Consensus 410 ~~~~~~~~~~~~~~l~~ai~~v----l~~~~-~~~~~~~a~ 445 (485)
+.. ++++++++|.++ +.|++ .+.+.++++
T Consensus 715 ~P~-------D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar 748 (815)
T PLN00142 715 DPY-------HGDEAANKIADFFEKCKEDPSYWNKISDAGL 748 (815)
T ss_pred CCC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 873 577787777654 46765 344444443
No 97
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.35 E-value=0.00092 Score=67.09 Aligned_cols=168 Identities=21% Similarity=0.237 Sum_probs=92.3
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhC--CCeEEEEEeCCCCCCccccccccccCchhhHhhh---c--CCCeEe-eccc
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERS--GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT---K--DRGLVV-ESWA 350 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~---~--~~n~~v-~~~~ 350 (485)
++++..|... ....+..++++++.. +..++++.+++. ...+-+.+.+.. . ..++.+ .+++
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD----------TPEVAEEVRQAVALLDRNRTGIIWINKML 269 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC----------cHHHHHHHHHHHHHhccccCceEEecCCC
Confidence 5666678765 233456666777665 345555444321 000111111111 1 123554 3567
Q ss_pred ch---HHhhhccCcceEEec----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHH
Q 036436 351 PQ---VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAE 423 (485)
Q Consensus 351 p~---~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (485)
++ ..++..+++ +|.- +...+++||+++|+|+|+.... .....+. .-+.|..++.... +..-..+.
T Consensus 270 ~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~-~~~~G~~~~~~~~-~~~~~~~~ 341 (388)
T TIGR02149 270 PKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVV-DGETGFLVPPDNS-DADGFQAE 341 (388)
T ss_pred CHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhh-CCCceEEcCCCCC-cccchHHH
Confidence 75 446888998 7753 2235779999999999997643 3444553 4367888876440 00011289
Q ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 424 LEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 424 l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
+.++|.++++|++ .+.+.+++++... +.-+-+...+++++.++
T Consensus 342 l~~~i~~l~~~~~~~~~~~~~a~~~~~-------~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 342 LAKAINILLADPELAKKMGIAGRKRAE-------EEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHH
Confidence 9999999998876 2344444444322 22344455556655544
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.25 E-value=0.00059 Score=69.36 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCeEeecccchHH---hhhccCcceEEecc---Cc-hhhHHhhhcCCcEEecccccchhHHHHHHHH---hhceEEEEec
Q 036436 342 RGLVVESWAPQVE---VLNHESVGGFVTHC---GW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVE---EMKVGLAVTR 411 (485)
Q Consensus 342 ~n~~v~~~~p~~~---lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~l~~ 411 (485)
++|.+.+++|+.+ +|..+++ +|+.. |. -++.||+++|+|.|+.-..+.-. ..+ + .-..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv-~~~~~g~~G~l~-- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIV-VPWDGGPTGFLA-- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---hee-eccCCCCceEEe--
Confidence 5788889988654 7778888 66422 22 48899999999999875433111 112 2 21466553
Q ss_pred cCCCCCccCHHHHHHHHHHHhcCch
Q 036436 412 SEEGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 412 ~~~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
-+++++++++.+++++++
T Consensus 377 -------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 -------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred -------CCHHHHHHHHHHHHhCCH
Confidence 268999999999998764
No 99
>PLN02275 transferase, transferring glycosyl groups
Probab=98.21 E-value=0.0043 Score=62.00 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=51.4
Q ss_pred CCeEeec-ccchHH---hhhccCcceEEe-c-----cC-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEe
Q 036436 342 RGLVVES-WAPQVE---VLNHESVGGFVT-H-----CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (485)
Q Consensus 342 ~n~~v~~-~~p~~~---lL~~~~~~~~I~-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (485)
.|+++.. |+|..+ +|+.+|+ +|. + -| -++++||+++|+|+|+.... .+...+ +.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC
Confidence 4566644 788755 5888998 763 1 12 35799999999999997532 245555 3436788764
Q ss_pred ccCCCCCccCHHHHHHHHHHHh
Q 036436 411 RSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 411 ~~~~~~~~~~~~~l~~ai~~vl 432 (485)
++++++++|.+++
T Consensus 359 ---------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---------SSSELADQLLELL 371 (371)
T ss_pred ---------CHHHHHHHHHHhC
Confidence 2678888888764
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=0.00045 Score=66.94 Aligned_cols=359 Identities=16% Similarity=0.096 Sum_probs=183.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTL 80 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 80 (485)
|++.-+++-+|++=.+.-+.+|.+++.+.+. .+..++.++-.+..- ......+-+ ++.. |+ . .-
T Consensus 1 m~~~Kv~~I~GTRPE~iKmapli~~~~~~~~-~~~~vi~TGQH~d~e-m~~~~le~~-----~i~~---pd--y--~L-- 64 (383)
T COG0381 1 MKMLKVLTIFGTRPEAIKMAPLVKALEKDPD-FELIVIHTGQHRDYE-MLDQVLELF-----GIRK---PD--Y--DL-- 64 (383)
T ss_pred CCceEEEEEEecCHHHHHHhHHHHHHHhCCC-CceEEEEecccccHH-HHHHHHHHh-----CCCC---CC--c--ch--
Confidence 5555566778999999999999999998873 444444444332111 111122221 2221 11 1 10
Q ss_pred CCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEE--EcCCcchh-HHHHhhhcCCceEEEecchhHhHhHHhhhcc
Q 036436 81 RSPADFPALVYELGELNNPNLHETLITISKRSNLKAFV--IDFLCNPA-FQVSSSTLSIPTYYYFTTAGSVLAANLYLPT 157 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI--~D~~~~~~-~~vA~~~lgIP~v~~~~~~~~~~~~~~~~p~ 157 (485)
.. ......+.+........+.+++++. +||+|+ .|..+..+ .++| -+++||+..+--.--
T Consensus 65 ~i-~~~~~tl~~~t~~~i~~~~~vl~~~----kPD~VlVhGDT~t~lA~alaa-~~~~IpV~HvEAGlR----------- 127 (383)
T COG0381 65 NI-MKPGQTLGEITGNIIEGLSKVLEEE----KPDLVLVHGDTNTTLAGALAA-FYLKIPVGHVEAGLR----------- 127 (383)
T ss_pred hc-cccCCCHHHHHHHHHHHHHHHHHhh----CCCEEEEeCCcchHHHHHHHH-HHhCCceEEEecccc-----------
Confidence 00 1112235556666778888888888 999999 45544444 5566 999999986532100
Q ss_pred cccccCccccccCcccccCCCCCCCCcccCCCcccCCCchhHHHHHHHHhhhcccceEEEcCchhhHHHHHHHHHhcccC
Q 036436 158 LHKNTTKSFRELGSALLNFPGFPPFPARDMALPMHDREGKVYKGLVDTGIQMAKSAGIIVNTFELLQERAIKAMLEGQCI 237 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (485)
.....+.+..+.. -...-++..+.++-. ... .+...
T Consensus 128 ----------------------------t~~~~~PEE~NR~--------l~~~~S~~hfapte~--ar~---nLl~E--- 163 (383)
T COG0381 128 ----------------------------TGDLYFPEEINRR--------LTSHLSDLHFAPTEI--ARK---NLLRE--- 163 (383)
T ss_pred ----------------------------cCCCCCcHHHHHH--------HHHHhhhhhcCChHH--HHH---HHHHc---
Confidence 0000000000000 000011122222211 111 11111
Q ss_pred CCCCCCCeeeeCCccCCCCCCC--CCCCccccccc-ccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhC---CCeEEE
Q 036436 238 PGETLPPLYCIGPVVGRGNGEN--RGRDRHECLSW-LDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS---GVKFLW 311 (485)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~~--~~~~~~~~~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~---~~~~i~ 311 (485)
+-+..++..+|-...+.-... ....+...... +.. ..+..+.||+=-..+.. +-+..|++++.+. ...+.+
T Consensus 164 -G~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~v 240 (383)
T COG0381 164 -GVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIV 240 (383)
T ss_pred -CCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceE
Confidence 111135777784322110000 00111122211 122 22338888865544444 4455666655442 123334
Q ss_pred EEeCCCCCCccccccccccCchhhHhhhcC-CCeEee---cccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecc
Q 036436 312 VVRAPAPDSVENRSSLESLLPEGFLDRTKD-RGLVVE---SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP 387 (485)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~n~~v~---~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P 387 (485)
+++-+. + ..+-+-...+++. +++... +|.+...++.++-+ ++|-.|. -.-||-..|+|.+++=
T Consensus 241 iyp~H~--------~--~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR 307 (383)
T COG0381 241 IYPVHP--------R--PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLR 307 (383)
T ss_pred EEeCCC--------C--hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeec
Confidence 443321 1 0010101123332 355544 46778889999988 9998774 4678999999999999
Q ss_pred cccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 036436 388 LYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDN 467 (485)
Q Consensus 388 ~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (485)
...+++. ++ +. |.-+.+.. +.+.|.+++.+++++++ +.+|......-. .+|.++.+.++.
T Consensus 308 ~~TERPE---~v-~a-gt~~lvg~--------~~~~i~~~~~~ll~~~~---~~~~m~~~~npY----gdg~as~rIv~~ 367 (383)
T COG0381 308 DTTERPE---GV-EA-GTNILVGT--------DEENILDAATELLEDEE---FYERMSNAKNPY----GDGNASERIVEI 367 (383)
T ss_pred cCCCCcc---ce-ec-CceEEeCc--------cHHHHHHHHHHHhhChH---HHHHHhcccCCC----cCcchHHHHHHH
Confidence 9889887 44 34 66555554 67999999999999887 665554443322 233345455554
Q ss_pred HHHHH
Q 036436 468 LVESF 472 (485)
Q Consensus 468 l~~~~ 472 (485)
+.+..
T Consensus 368 l~~~~ 372 (383)
T COG0381 368 LLNYF 372 (383)
T ss_pred HHHHh
Confidence 44433
No 101
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.10 E-value=0.0054 Score=62.37 Aligned_cols=102 Identities=8% Similarity=0.050 Sum_probs=64.5
Q ss_pred EeecccchHHhhhccCcceEEecc----CchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccC
Q 036436 345 VVESWAPQVEVLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVS 420 (485)
Q Consensus 345 ~v~~~~p~~~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (485)
++.++.+..+++...++ ||.-+ =.++++||+++|+|+|+.-..+. ..+ ..-+-|... . +
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v-~~~~ng~~~---~------~ 349 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFF-KQFPNCRTY---D------D 349 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----cee-ecCCceEec---C------C
Confidence 35566677779999998 99874 35789999999999999864431 222 121333333 2 5
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 421 SAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 421 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
.+++.+++.++|+++. +..+.+++ +.-|-+.+++++++.+.-.
T Consensus 350 ~~~~a~ai~~~l~~~~-~~~~~~a~-----------~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 350 GKGFVRATLKALAEEP-APLTDAQR-----------HELSWEAATERFLRVADLD 392 (462)
T ss_pred HHHHHHHHHHHHccCc-hhHHHHHH-----------HhCCHHHHHHHHHHHhccC
Confidence 7899999999998542 11222211 1244456677777665544
No 102
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.07 E-value=0.0016 Score=67.38 Aligned_cols=134 Identities=10% Similarity=0.032 Sum_probs=72.5
Q ss_pred cEEEEecCCCcc-CCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhc--CCCeEee-cccch-
Q 036436 278 SVLFLCFGSLGS-FSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK--DRGLVVE-SWAPQ- 352 (485)
Q Consensus 278 ~~V~vs~GS~~~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~n~~v~-~~~p~- 352 (485)
.++++..|.+.. ...+.+.+.+..+...+.+++++-.++ . ...+.+.+..+ ..++++. ++...
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~---------~---~~~~~~~~~~~~~~~~v~~~~~~~~~~ 363 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD---------P---EYEEALRELAARYPGRVAVLIGYDEAL 363 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC---------H---HHHHHHHHHHHhCCCcEEEEEeCCHHH
Confidence 356677787762 223334444444444455555443231 0 01111211111 3466543 44322
Q ss_pred -HHhhhccCcceEEec---cCc-hhhHHhhhcCCcEEeccccc--chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHH
Q 036436 353 -VEVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELE 425 (485)
Q Consensus 353 -~~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~ 425 (485)
..+++.+++ ++.. -|. .+.+||+++|+|.|+....+ |.......-. .-|.|..++. -+++++.
T Consensus 364 ~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~-~~~~G~~~~~-------~~~~~l~ 433 (476)
T cd03791 364 AHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDT-GEGTGFVFEG-------YNADALL 433 (476)
T ss_pred HHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCC-CCCCeEEeCC-------CCHHHHH
Confidence 247788888 7753 123 47899999999999876532 2111110000 1257888877 4689999
Q ss_pred HHHHHHhc
Q 036436 426 QRVSELMD 433 (485)
Q Consensus 426 ~ai~~vl~ 433 (485)
+++.++++
T Consensus 434 ~~i~~~l~ 441 (476)
T cd03791 434 AALRRALA 441 (476)
T ss_pred HHHHHHHH
Confidence 99999885
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.07 E-value=0.0014 Score=67.63 Aligned_cols=77 Identities=8% Similarity=0.072 Sum_probs=50.0
Q ss_pred ecccch--HHhhhccCcceEEec---cCch-hhHHhhhcCCcEEeccccc--chhHHHHHHHHhhceEEEEeccCCCCCc
Q 036436 347 ESWAPQ--VEVLNHESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 347 ~~~~p~--~~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
.+|-.. ..+++.+++ +|.- -|.| +.+||+++|+|.|+....+ |...+...-.+. +.|..++.
T Consensus 343 ~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~------- 412 (466)
T PRK00654 343 IGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD------- 412 (466)
T ss_pred EeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-------
Confidence 456332 247888998 7753 3544 8899999999999875432 211111000122 67888876
Q ss_pred cCHHHHHHHHHHHhc
Q 036436 419 VSSAELEQRVSELMD 433 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~ 433 (485)
-+++++.++|.++++
T Consensus 413 ~d~~~la~~i~~~l~ 427 (466)
T PRK00654 413 FNAEDLLRALRRALE 427 (466)
T ss_pred CCHHHHHHHHHHHHH
Confidence 468999999999886
No 104
>PLN02949 transferase, transferring glycosyl groups
Probab=98.04 E-value=0.012 Score=60.45 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCCeEeecccchHH---hhhccCcceEEe---ccCch-hhHHhhhcCCcEEecccccchhHHHHHHHH-hhc-eEEEEec
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVE-EMK-VGLAVTR 411 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G-~G~~l~~ 411 (485)
.+++.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|.|+....+--.+. +.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eI---V~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDI---VLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCccee---eecCCCCcccccC--
Confidence 45788889998654 6778887 774 23444 799999999999998643210000 000 001 22221
Q ss_pred cCCCCCccCHHHHHHHHHHHhcCc-h-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 412 SEEGDGLVSSAELEQRVSELMDSE-K-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 412 ~~~~~~~~~~~~l~~ai~~vl~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
-+.++++++|.++++++ + .+++.+++++..++ -+.++..+++.+.+.+
T Consensus 407 -------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -------TTVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHH
Confidence 26889999999999854 3 33455555544332 3444555666555543
No 105
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.04 E-value=0.0017 Score=62.95 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=108.1
Q ss_pred CeeeeC-CccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhC-----CCeEEEEEeCCC
Q 036436 244 PLYCIG-PVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERS-----GVKFLWVVRAPA 317 (485)
Q Consensus 244 ~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-----~~~~i~~~~~~~ 317 (485)
+.+||| |+....+.. .....+.+-+....+.+++.+--||-.+.=...+..+.++.+.+ +.+|++-+-..
T Consensus 157 ~~~yVGHpl~d~i~~~---~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~- 232 (381)
T COG0763 157 PCTYVGHPLADEIPLL---PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA- 232 (381)
T ss_pred CeEEeCChhhhhcccc---ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH-
Confidence 499999 887655321 22333444444344455999999997632222233344444332 45666655332
Q ss_pred CCCccccccccccCchhhHhhhcCCCe-Eeeccc-c--hHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccccc-ch
Q 036436 318 PDSVENRSSLESLLPEGFLDRTKDRGL-VVESWA-P--QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA-EQ 392 (485)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~n~-~v~~~~-p--~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~-DQ 392 (485)
.. +.........+. ...-++ + -..++..+++ .+.-+|-. ++|+..+|+|||+.=-.. =-
T Consensus 233 ---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it 296 (381)
T COG0763 233 ---------KY----RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPIT 296 (381)
T ss_pred ---------HH----HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHH
Confidence 00 111111111111 011122 2 2336778887 77776654 579999999999872211 12
Q ss_pred hHHHHHHHHhhc--------eEEEE----eccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCC
Q 036436 393 KMIKAVVVEEMK--------VGLAV----TRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGG 459 (485)
Q Consensus 393 ~~na~~v~~~~G--------~G~~l----~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g 459 (485)
+..+++.. ++. +|..+ -.+. .+++.|.+++..++.|+. .+++.+...++.+.++ +++
T Consensus 297 ~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~-----~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~ 366 (381)
T COG0763 297 YFIAKRLV-KLPYVSLPNILAGREIVPELIQED-----CTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDP 366 (381)
T ss_pred HHHHHHhc-cCCcccchHHhcCCccchHHHhhh-----cCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCc
Confidence 22344432 222 11111 1234 789999999999999884 3556666666666665 455
Q ss_pred cHHHHHHHHHHHH
Q 036436 460 SSRVALDNLVESF 472 (485)
Q Consensus 460 ~~~~~~~~l~~~~ 472 (485)
+++.+.+.+++.+
T Consensus 367 ~~e~aA~~vl~~~ 379 (381)
T COG0763 367 ASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 106
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.92 E-value=0.0046 Score=61.75 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=66.9
Q ss_pred CCeEeeccc--ch---HHhhhccCcceEEecc---C-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEecc
Q 036436 342 RGLVVESWA--PQ---VEVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (485)
Q Consensus 342 ~n~~v~~~~--p~---~~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (485)
.++.+.++. +. ..+++.+++ ||... | ..+++||+++|+|+|+....+ ....+. .-..|..++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~-~~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIE-DGETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcc-cCCceEEeC--
Confidence 467776775 33 357788888 88643 2 349999999999999976532 223342 324565443
Q ss_pred CCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 413 EEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 413 ~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
+.+.++++|.+++.|++ .+.+.+++++... +.-+-...++++++.+.+
T Consensus 323 -------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~-------~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -------TVEEAAVRILYLLRDPELRRKMGANAREHVR-------ENFLITRHLKDYLYLISK 371 (372)
T ss_pred -------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHh
Confidence 24567789999998775 2334444444321 234445666666665543
No 107
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.91 E-value=0.0064 Score=63.04 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=68.3
Q ss_pred CCeEeecccchHHhhhccCcceEEe---ccCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEecc-CCCC
Q 036436 342 RGLVVESWAPQVEVLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS-EEGD 416 (485)
Q Consensus 342 ~n~~v~~~~p~~~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~-~~~~ 416 (485)
.++.+.++.+...++..+++ +|. .-|. .+++||+++|+|+|+.-..+- +...+ +.-..|..++.. +.++
T Consensus 376 ~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI-~~g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFI-EDNKNGYLIPIDEEEDD 449 (500)
T ss_pred CeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHc-cCCCCEEEEeCCccccc
Confidence 46788889888899999999 775 3344 589999999999999754311 22334 342467777632 1000
Q ss_pred CccC-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 036436 417 GLVS-SAELEQRVSELMDSEKGRAVKERAVAMKEAA 451 (485)
Q Consensus 417 ~~~~-~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~ 451 (485)
. -+ .+.++++|.++++++..+.+.+++.+.++.+
T Consensus 450 ~-~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 450 E-DQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred h-hHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 0 12 7889999999996554556677777655543
No 108
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.91 E-value=0.0027 Score=63.35 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=68.2
Q ss_pred CCeEeecccch-HHhhhccCcceEEec--cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCc
Q 036436 342 RGLVVESWAPQ-VEVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 342 ~n~~v~~~~p~-~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
.++.+.++.++ ..++..+++-++.++ |...+++||+++|+|+|+.....- ....+. .-..|..++.
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~-~~~~G~lv~~------- 329 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIE-DGENGYLVPK------- 329 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcc-cCCCceEeCC-------
Confidence 46777777665 458899999444444 234689999999999999754311 223343 3257777766
Q ss_pred cCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHH
Q 036436 419 VSSAELEQRVSELMDSEK-GRAVKERAVAMKEAA 451 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~ 451 (485)
-+.++++++|.++++|++ .+.+.+++++.++.+
T Consensus 330 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 330 GDIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 379999999999999885 455666666665444
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.87 E-value=0.038 Score=55.29 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=53.4
Q ss_pred CCCeEeecccchHH---hhhccCcceEE------eccCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEe
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFV------THCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I------~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (485)
.+|+.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 46899999998655 67788883321 12333 458999999999998763 1222 2323 33333
Q ss_pred ccCCCCCccCHHHHHHHHHHHhcCch
Q 036436 411 RSEEGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 411 ~~~~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
. -+.+++.++|.+++.++.
T Consensus 324 ~-------~d~~~~~~ai~~~l~~~~ 342 (373)
T cd04950 324 A-------DDPEEFVAAIEKALLEDG 342 (373)
T ss_pred C-------CCHHHHHHHHHHHHhcCC
Confidence 3 268999999999876553
No 110
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.79 E-value=0.00029 Score=61.94 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=65.9
Q ss_pred CCCeEeecccc---hHHhhhccCcceEEec----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAP---QVEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p---~~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.++.+ ...++..+++ +|+. |...++.||+++|+|+|+. |-..+...+ ...+.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC--
Confidence 35788889987 3558888898 8877 6677999999999999985 344555555 35366888888
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAV 445 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~ 445 (485)
.+.+++.++|.+++++++ .+.+.++++
T Consensus 143 -----~~~~~l~~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 143 -----NDIEELADAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 579999999999998876 233444443
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.79 E-value=0.0054 Score=64.28 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=53.7
Q ss_pred eEeecccchH-HhhhccCcceEEecc---C-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCc
Q 036436 344 LVVESWAPQV-EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 344 ~~v~~~~p~~-~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
+.+.++.++. .+++.+++ ||.-. | ..+++||+++|+|+|+.-..+... + .. |.+..+. .
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~--~----- 666 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY--K----- 666 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec--C-----
Confidence 5566777754 48999998 88643 3 368999999999999987755321 2 12 3222222 2
Q ss_pred cCHHHHHHHHHHHhcCch
Q 036436 419 VSSAELEQRVSELMDSEK 436 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~~~~ 436 (485)
+.+++.++|.++|+++.
T Consensus 667 -D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 667 -TSEDFVAKVKEALANEP 683 (794)
T ss_pred -CHHHHHHHHHHHHhCch
Confidence 68999999999998774
No 112
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0004 Score=56.33 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=73.2
Q ss_pred EEEecCCCccCCHHhHH---HHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeeccc--c-hH
Q 036436 280 LFLCFGSLGSFSSKQLK---EMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWA--P-QV 353 (485)
Q Consensus 280 V~vs~GS~~~~~~~~~~---~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~--p-~~ 353 (485)
+|||-||.. .+-..+. ++.+-.+....++|+.+|.. +..|- .++.+.+|. + ..
T Consensus 2 ifVTvGstf-~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------------d~kpv--------agl~v~~F~~~~kiQ 60 (161)
T COG5017 2 IFVTVGSTF-YPFNRLVLKIEVLELTELIQEELIVQYGNG------------DIKPV--------AGLRVYGFDKEEKIQ 60 (161)
T ss_pred eEEEecCcc-chHHHHHhhHHHHHHHHHhhhheeeeecCC------------Ccccc--------cccEEEeechHHHHH
Confidence 789999985 2222211 13333333456788888764 11220 133455553 3 34
Q ss_pred HhhhccCcceEEeccCchhhHHhhhcCCcEEeccccc--------chhHHHHHHHHhhceEEEEeccC
Q 036436 354 EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--------EQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 354 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
.+...+++ +|+|+|.||++.++..++|.|++|-.. .|...|..++ +++.-+...+.+
T Consensus 61 sli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~spte 125 (161)
T COG5017 61 SLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSPTE 125 (161)
T ss_pred HHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcCCc
Confidence 46666776 999999999999999999999999643 6999999996 558777776543
No 113
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.74 E-value=0.001 Score=67.36 Aligned_cols=111 Identities=17% Similarity=0.259 Sum_probs=73.2
Q ss_pred CCCeEeecccchHH---hhhccCcceEEeccC----chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAPQVE---VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p~~~---lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++.+.+|+++.+ ++..+++.++|...- -++++||+++|+|+|+....+ ....+ +.-+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i-~~~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIV-DNGGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHh-cCCCcEEEeCCC-
Confidence 34688889999764 455444444876543 468999999999999865433 44555 452488888764
Q ss_pred CCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAAAAMRDGGSSRVALDNLV 469 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (485)
-+.++++++|.++++|++ ...++++|++ .+.+.-+.+....+|+
T Consensus 362 -----~~~~~la~~I~~ll~~~~~~~~m~~~ar~-------~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 362 -----PTPNELVSSLSKFIDNEEEYQTMREKARE-------KWEENFNASKNYREFA 406 (407)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH-------HHHHHcCHHHhHHHhc
Confidence 379999999999998775 2334444433 3334455555555553
No 114
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.71 E-value=0.038 Score=57.23 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=65.9
Q ss_pred CCeEeecccchH---HhhhccCcceEEecc---Cch-hhHHhhhcCCcEEeccccc--chhHHHHHHHHhhceEEEEecc
Q 036436 342 RGLVVESWAPQV---EVLNHESVGGFVTHC---GWN-SVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRS 412 (485)
Q Consensus 342 ~n~~v~~~~p~~---~lL~~~~~~~~I~Hg---G~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 412 (485)
.++.+....+.. .+++.+++ +|.-. |.| +.+||+++|+|.|+....+ |...+...-.+. +.|..++.
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~- 421 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE- 421 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-
Confidence 355554444443 47888888 77542 444 7899999999999876532 211110000011 67888776
Q ss_pred CCCCCccCHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 413 EEGDGLVSSAELEQRVSELMD----SEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 413 ~~~~~~~~~~~l~~ai~~vl~----~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
-++++++++|.+++. |++ .+ +++++. ++++.-+-++.++++++..+
T Consensus 422 ------~d~~~la~~i~~~l~~~~~~~~---~~---~~~~~~---~~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 422 ------YDPGALLAALSRALRLYRQDPS---LW---EALQKN---AMSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred ------CCHHHHHHHHHHHHHHHhcCHH---HH---HHHHHH---HhccCCCcHHHHHHHHHHHH
Confidence 468999999999886 443 21 222222 12234555566666666544
No 115
>PLN02316 synthase/transferase
Probab=97.62 E-value=0.18 Score=56.08 Aligned_cols=116 Identities=7% Similarity=-0.062 Sum_probs=67.0
Q ss_pred CeEeecccchH---HhhhccCcceEEecc---C-chhhHHhhhcCCcEEeccccc--chhHHH------HHHHHhhceEE
Q 036436 343 GLVVESWAPQV---EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYA--EQKMIK------AVVVEEMKVGL 407 (485)
Q Consensus 343 n~~v~~~~p~~---~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~--DQ~~na------~~v~~~~G~G~ 407 (485)
++.+....+.. .+++.+++ |+... | ..+.+||+++|+|.|+....+ |..... ......-+.|.
T Consensus 901 rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGf 978 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGF 978 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceE
Confidence 45544333432 57888888 88532 3 358999999999999875532 222111 00000115687
Q ss_pred EEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 036436 408 AVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (485)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (485)
.++. .+++.|..+|.+++.+. ......+++..++.|...-|-.+.+++.++-.
T Consensus 979 lf~~-------~d~~aLa~AL~raL~~~-----~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 979 SFDG-------ADAAGVDYALNRAISAW-----YDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred EeCC-------CCHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 7776 47899999999999742 22233344444444444555545555544443
No 116
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.62 E-value=0.11 Score=53.81 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=68.8
Q ss_pred CCCeEeecccch-HHhhhccCcceEEec---cC-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 341 ~~n~~v~~~~p~-~~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
..++.+.+|..+ ..+|..+++ ||.. -| -++++||+++|+|+|+.... -+...|. .-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~-dG~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFI-EGVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcc-cCCcEEEECCC---
Confidence 367888888654 458899999 8863 45 46999999999999987653 3344453 32678888764
Q ss_pred CCccCHHHHHHHH---HHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 416 DGLVSSAELEQRV---SELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 416 ~~~~~~~~l~~ai---~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
+.+.+.+++ .++....+ ....+++..++.+.+.-+.++.++...+.+..
T Consensus 524 ----D~~aLa~ai~lA~aL~~ll~------~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 524 ----QTVNLDQACRYAEKLVNLWR------SRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred ----ChhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 344455444 22222111 11223333333334456666777777665543
No 117
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.60 E-value=0.031 Score=57.91 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=64.3
Q ss_pred CCCeEeecccchHHhhhccCcceEEec----cCchhhHHhhhcCCcEEecccccchhHHHHHHHHh----hc-eEEEEec
Q 036436 341 DRGLVVESWAPQVEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEE----MK-VGLAVTR 411 (485)
Q Consensus 341 ~~n~~v~~~~p~~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----~G-~G~~l~~ 411 (485)
..++.+.+.....++++.+++ +|.. |--++++||+++|+|+|+... ......+.+. +| .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 357888886677789999998 6644 334689999999999999543 3333444221 12 7877776
Q ss_pred cCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHH
Q 036436 412 SEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAV 445 (485)
Q Consensus 412 ~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~ 445 (485)
-+.+++++++.++++|++ .+.+.++++
T Consensus 427 -------~d~~~la~ai~~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 427 -------ADPEALARAILRLLKDPELRRAMGEAGR 454 (475)
T ss_pred -------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 469999999999999886 233444443
No 118
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.59 E-value=0.00051 Score=68.00 Aligned_cols=127 Identities=13% Similarity=0.195 Sum_probs=84.0
Q ss_pred EEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchH---Hhh
Q 036436 280 LFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQV---EVL 356 (485)
Q Consensus 280 V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~---~lL 356 (485)
.++..|++. ....+..++++++..+.+++++-.++ ..+.+.+ ....|+.+.+++|+. .++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------------~~~~l~~-~~~~~V~~~g~~~~~~~~~~~ 259 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------------ELDRLRA-KAGPNVTFLGRVSDEELRDLY 259 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------------hHHHHHh-hcCCCEEEecCCCHHHHHHHH
Confidence 345567765 23446778888888887765544332 1112222 234689999999974 478
Q ss_pred hccCcceEEeccCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc
Q 036436 357 NHESVGGFVTHCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE 435 (485)
Q Consensus 357 ~~~~~~~~I~HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~ 435 (485)
..+++-++-+.-|. .+++||+++|+|+|+....+ ....+. .-+.|..++. -+.+.++++|.++++|+
T Consensus 260 ~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~-~~~~G~~~~~-------~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 260 ARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVI-DGVTGILFEE-------QTVESLAAAVERFEKNE 327 (351)
T ss_pred HhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Ccceee-CCCCEEEeCC-------CCHHHHHHHHHHHHhCc
Confidence 88998332234444 46789999999999986543 223343 3267888876 36888999999999987
No 119
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.57 E-value=0.0053 Score=61.58 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=74.0
Q ss_pred CCeEeecccchHH---hhhccCcceEEec----cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 342 RGLVVESWAPQVE---VLNHESVGGFVTH----CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 342 ~n~~v~~~~p~~~---lL~~~~~~~~I~H----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
.++.+.+++|+.+ +++.+++ +|.. .|. .+++||+++|+|+|+....+ +...+. .-..|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~-~~~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVL-EGITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcc-cCCceEEEeCC-
Confidence 4678889998544 6888998 7753 343 57889999999999986532 333443 42567655432
Q ss_pred CCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 414 EGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
.+.++++++|.++++|++...+.++++ +.+.+.-+-+..++++.+.+.+
T Consensus 329 -----~d~~~la~~I~~ll~d~~~~~~~~~ar-------~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 -----MTSDSIISDINRTLADPELTQIAEQAK-------DFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred -----CCHHHHHHHHHHHHcCHHHHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHHH
Confidence 479999999999999886222333322 2222345555677777776654
No 120
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.52 E-value=0.0016 Score=65.65 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=90.8
Q ss_pred CCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhh-hcCCCeEeecccchH
Q 036436 275 PSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDR-TKDRGLVVESWAPQV 353 (485)
Q Consensus 275 ~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~n~~v~~~~p~~ 353 (485)
+++.++|.||.+....+++.+....+-|+..+...+|..+.+... ...+-..+... +..+.+++.++.+..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--------EARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--------HHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--------HHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 344599999999999999999999999999999899988764210 11111111111 112346677777765
Q ss_pred Hhh---hccCcceEE---eccCchhhHHhhhcCCcEEecccccc-hhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHH
Q 036436 354 EVL---NHESVGGFV---THCGWNSVLEGVCAGVPMLAWPLYAE-QKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQ 426 (485)
Q Consensus 354 ~lL---~~~~~~~~I---~HgG~gs~~eal~~GvP~v~~P~~~D-Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (485)
+-| ..+|+ +. ..+|.+|++|||+.|||+|.+|=-.= ...-+..+ ..+|+.-.+.. +.++-.+
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA~--------s~~eYv~ 422 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIAD--------SEEEYVE 422 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-S--------SHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcCC--------CHHHHHH
Confidence 433 34555 54 46799999999999999999994322 22233344 46677654433 5555444
Q ss_pred HHHHHhcCchHHHHHHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 427 RVSELMDSEKGRAVKER-AVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 427 ai~~vl~~~~~~~~~~~-a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
..-++-+|.+ ++++ -+++++.+.++ .-....+.+.+|++.+++
T Consensus 423 ~Av~La~D~~---~l~~lR~~Lr~~~~~S--pLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 423 IAVRLATDPE---RLRALRAKLRDRRSKS--PLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp HHHHHHH-HH---HHHHHHHHHHHHHHHS--GGG-HHHHHHHHHHHHHH
T ss_pred HHHHHhCCHH---HHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHH
Confidence 4445556665 3222 12233333222 224455677777766654
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.37 E-value=0.001 Score=55.74 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=50.4
Q ss_pred CCCeEeecccch-HHhhhccCcceEEec--cC-chhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH--CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 341 ~~n~~v~~~~p~-~~lL~~~~~~~~I~H--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
.+|+.+.+|++. .++++.+++.+..+. .| .+++.|++++|+|+|+.+.. ....+ +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE-C-----
Confidence 358999999874 558889999666542 23 48999999999999998761 22222 234888777 2
Q ss_pred CccCHHHHHHHHHHHhcC
Q 036436 417 GLVSSAELEQRVSELMDS 434 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~ 434 (485)
-+++++.++|.++++|
T Consensus 120 --~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 --NDPEELAEAIERLLND 135 (135)
T ss_dssp --T-HHHHHHHHHHHHH-
T ss_pred --CCHHHHHHHHHHHhcC
Confidence 3899999999999865
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.37 E-value=0.21 Score=50.63 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=68.7
Q ss_pred HHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEE-EeccCCCCCccCHHHHHHHHHHH
Q 036436 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLA-VTRSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 353 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~~~l~~ai~~v 431 (485)
..+++++++ +|..==+ ++.-|+..|||.|.+++ | +.....+ +.+|.... .+... ++.++|.+.+.++
T Consensus 322 ~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~~-----l~~~~Li~~v~~~ 389 (426)
T PRK10017 322 GKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIRH-----LLDGSLQAMVADT 389 (426)
T ss_pred HHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechhh-----CCHHHHHHHHHHH
Confidence 478889988 8865333 56668899999999998 3 3333444 57788866 56666 8999999999999
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 432 MDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 432 l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
++|.+ ++++..++--+++++. +...+.++++.+.+
T Consensus 390 ~~~r~--~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~~ 424 (426)
T PRK10017 390 LGQLP--ALNARLAEAVSRERQT------GMQMVQSVLERIGE 424 (426)
T ss_pred HhCHH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 98775 3454444444444321 23556666665543
No 123
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.03 E-value=0.26 Score=46.47 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=71.2
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHH
Q 036436 9 TSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPA 88 (485)
Q Consensus 9 ~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~ 88 (485)
=..-.-|+.-|..|-++|.++| |+|.+.+-... .....+..+ |+.+..+...-+ ..+..
T Consensus 6 DI~n~~hvhfFk~lI~elekkG--~ev~iT~rd~~-----~v~~LLd~y-----gf~~~~Igk~g~---------~tl~~ 64 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKKG--HEVLITCRDFG-----VVTELLDLY-----GFPYKSIGKHGG---------VTLKE 64 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhCC--eEEEEEEeecC-----cHHHHHHHh-----CCCeEeecccCC---------ccHHH
Confidence 3444558888999999999999 99999754322 223344444 666655553311 12222
Q ss_pred HHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecch
Q 036436 89 LVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTA 145 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~ 145 (485)
.+.+.. ...-.+.+++.++ +||+.+. -.++.+..+| --+|+|.+.+.-..
T Consensus 65 Kl~~~~-eR~~~L~ki~~~~----kpdv~i~-~~s~~l~rva-fgLg~psIi~~D~e 114 (346)
T COG1817 65 KLLESA-ERVYKLSKIIAEF----KPDVAIG-KHSPELPRVA-FGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHH-HHHHHHHHHHhhc----CCceEee-cCCcchhhHH-hhcCCceEEecCCh
Confidence 222222 2333566677776 9999999 5588899999 99999999875533
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.70 E-value=0.015 Score=57.10 Aligned_cols=110 Identities=18% Similarity=0.323 Sum_probs=75.8
Q ss_pred CCeEeecccchHHhhhc--cCcceEEecc-------Cc------hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceE
Q 036436 342 RGLVVESWAPQVEVLNH--ESVGGFVTHC-------GW------NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG 406 (485)
Q Consensus 342 ~n~~v~~~~p~~~lL~~--~~~~~~I~Hg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 406 (485)
.|+.+.+|+|+.++..+ .+.+++...- .+ +-+.+.+++|+|+|+. ++...+..|+ +-++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~-~~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIV-ENGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHH-hCCce
Confidence 58999999998775432 2443333221 11 2277789999999986 4456777785 44899
Q ss_pred EEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 036436 407 LAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (485)
Q Consensus 407 ~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (485)
..++. .+++.+++.++. +++.+.|++|++++++.++ .|.-.++++++++.
T Consensus 282 ~~v~~---------~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 282 FVVDS---------LEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred EEeCC---------HHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 99873 357888888753 4446779999999999988 24555566666654
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.68 E-value=0.26 Score=44.59 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=36.5
Q ss_pred CCCeEeecccch----HHhhhccCcceEEeccC----chhhHHhhhcCCcEEecccccc
Q 036436 341 DRGLVVESWAPQ----VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAE 391 (485)
Q Consensus 341 ~~n~~v~~~~p~----~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~D 391 (485)
..|+.+.++++. ..++..+++ +|+... .++++||+++|+|+|+.+....
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 457888888632 224444777 888776 7899999999999999887543
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.19 Score=51.26 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=89.8
Q ss_pred CCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh-----cCCCeEeecc
Q 036436 275 PSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-----KDRGLVVESW 349 (485)
Q Consensus 275 ~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~n~~v~~~ 349 (485)
+++-+||+||+......++.+...++-++..+..++|..+++.... +-..+++.. ....+++.+-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~----------~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE----------INARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH----------HHHHHHHHHHHcCCChhheeecCC
Confidence 4556999999999999999999999999999999999987741111 111222211 1345566666
Q ss_pred cchH---HhhhccCcceEEe---ccCchhhHHhhhcCCcEEecccccchhH--HHHHHHHhhceEEEEeccCCCCCccCH
Q 036436 350 APQV---EVLNHESVGGFVT---HCGWNSVLEGVCAGVPMLAWPLYAEQKM--IKAVVVEEMKVGLAVTRSEEGDGLVSS 421 (485)
Q Consensus 350 ~p~~---~lL~~~~~~~~I~---HgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~~~~~ 421 (485)
.|.. +=+..+|+ |.- -||+.|++|+|..|||+|..+ ++||. |+.-+...+|+--.+-.++ .
T Consensus 497 ~~~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s~-------~ 565 (620)
T COG3914 497 APNEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADSR-------A 565 (620)
T ss_pred CCCHHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCCH-------H
Confidence 6643 34445666 764 599999999999999999885 66663 4455545556655555432 4
Q ss_pred HHHHHHHH
Q 036436 422 AELEQRVS 429 (485)
Q Consensus 422 ~~l~~ai~ 429 (485)
+=+..++.
T Consensus 566 dYV~~av~ 573 (620)
T COG3914 566 DYVEKAVA 573 (620)
T ss_pred HHHHHHHH
Confidence 44666653
No 127
>PHA01633 putative glycosyl transferase group 1
Probab=96.21 E-value=0.17 Score=49.52 Aligned_cols=85 Identities=9% Similarity=0.121 Sum_probs=55.1
Q ss_pred CCeEee---cccch---HHhhhccCcceEEec---cCc-hhhHHhhhcCCcEEeccc------ccch------hHHHHHH
Q 036436 342 RGLVVE---SWAPQ---VEVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPL------YAEQ------KMIKAVV 399 (485)
Q Consensus 342 ~n~~v~---~~~p~---~~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~~v 399 (485)
.++.+. +++++ ..+++.+++ ||.- =|+ .+++||+++|+|+|+--. .+|+ ..+....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 467776 45554 357888888 8864 344 578999999999998633 2332 2222222
Q ss_pred HH-hhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc
Q 036436 400 VE-EMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE 435 (485)
Q Consensus 400 ~~-~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~ 435 (485)
.+ .-|.|..++. .++++++++|..++...
T Consensus 279 ~~~~~g~g~~~~~-------~d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 279 YDKEHGQKWKIHK-------FQIEDMANAIILAFELQ 308 (335)
T ss_pred cCcccCceeeecC-------CCHHHHHHHHHHHHhcc
Confidence 21 1256666654 68999999999996543
No 128
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.16 E-value=1.7 Score=43.88 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=67.1
Q ss_pred EEEecCCCccCCHHhHHHHHHHHHhCCCeE-EEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccc-h---HH
Q 036436 280 LFLCFGSLGSFSSKQLKEMAIGLERSGVKF-LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP-Q---VE 354 (485)
Q Consensus 280 V~vs~GS~~~~~~~~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p-~---~~ 354 (485)
+++..|.........+..+++|+...+..+ ++++|... .. ...++...++.. + ..
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~---------------~~-----~~~~v~~~g~~~~~~~l~~ 302 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS---------------PF-----TAGNVVNHGFETDKRKLMS 302 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC---------------cc-----cccceEEecCcCCHHHHHH
Confidence 444445432223333567888888765443 44454320 00 012444445542 2 44
Q ss_pred hhhccCcceEEecc----CchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHH
Q 036436 355 VLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRV 428 (485)
Q Consensus 355 lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai 428 (485)
+++.+++ ||.-. --.+++||+++|+|+|+....+ -+ ..+ +. +.|..++.. +.++|++.+
T Consensus 303 ~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~---Eiv-~~-~~G~lv~~~-------d~~~La~~~ 365 (405)
T PRK10125 303 ALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-AR---EVL-QK-SGGKTVSEE-------EVLQLAQLS 365 (405)
T ss_pred HHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-hH---HhE-eC-CcEEEECCC-------CHHHHHhcc
Confidence 6667888 88643 2368999999999999998765 22 223 34 578888874 577888754
No 129
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.12 E-value=0.2 Score=51.47 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=92.0
Q ss_pred CCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCcc
Q 036436 243 PPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVE 322 (485)
Q Consensus 243 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~ 322 (485)
|...|||---.+....-..+..+.+.+.-- +++-+||.+|--....+|+.+...++-|++.+..++|..+.+...
T Consensus 726 Ph~ffi~d~~qk~~~~~dpn~kP~r~~y~L--p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g--- 800 (966)
T KOG4626|consen 726 PHCFFIGDHKQKNQDVLDPNNKPTRSQYGL--PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG--- 800 (966)
T ss_pred CceEEecCcccccccccCCCCCCCCCCCCC--CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc---
Confidence 778888844332211100011122222211 334499999998889999999999999999999999999887322
Q ss_pred ccccccccCchhhHhh-----hcCCCeEeecccchHHhhhc-----cCcceEEeccCchhhHHhhhcCCcEEecccccch
Q 036436 323 NRSSLESLLPEGFLDR-----TKDRGLVVESWAPQVEVLNH-----ESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392 (485)
Q Consensus 323 ~~~~~~~~lp~~~~~~-----~~~~n~~v~~~~p~~~lL~~-----~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 392 (485)
+ ..|..- +.+..|++.+-+...+-.++ -.+.-+.+ .|+.|.++.|..|||||.+|-..--
T Consensus 801 ------e---~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lA 870 (966)
T KOG4626|consen 801 ------E---QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLA 870 (966)
T ss_pred ------h---HHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHH
Confidence 0 112110 12334555444443332222 22222333 4889999999999999999985544
Q ss_pred hHHHHHHHHhhceEEEEec
Q 036436 393 KMIKAVVVEEMKVGLAVTR 411 (485)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~ 411 (485)
...|..+--.+|+|-.+.+
T Consensus 871 srVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 871 SRVAASLLTALGLGHLIAK 889 (966)
T ss_pred HHHHHHHHHHcccHHHHhh
Confidence 4444333346788875554
No 130
>PRK14098 glycogen synthase; Provisional
Probab=95.86 E-value=0.16 Score=52.69 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=54.1
Q ss_pred CCCeEeecccchH---HhhhccCcceEEecc---Cc-hhhHHhhhcCCcEEeccccc--chhHHHHHHHHhhceEEEEec
Q 036436 341 DRGLVVESWAPQV---EVLNHESVGGFVTHC---GW-NSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTR 411 (485)
Q Consensus 341 ~~n~~v~~~~p~~---~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~ 411 (485)
+.++.+..+.+.. .+++.+++ |+... |. .+.+||+++|+|.|+....+ |.... .. +.-+.|..++.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC
Confidence 3577777777764 57888998 77543 22 37789999999988876532 22111 11 11267777766
Q ss_pred cCCCCCccCHHHHHHHHHHHh
Q 036436 412 SEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 412 ~~~~~~~~~~~~l~~ai~~vl 432 (485)
-+++.+.++|.+++
T Consensus 436 -------~d~~~la~ai~~~l 449 (489)
T PRK14098 436 -------YTPEALVAKLGEAL 449 (489)
T ss_pred -------CCHHHHHHHHHHHH
Confidence 47899999999876
No 131
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.84 E-value=0.016 Score=45.34 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=45.0
Q ss_pred CCcccccccccCCCCCcEEEEecCCCccC---C--HHhHHHHHHHHHhCCCeEEEEEeCC
Q 036436 262 RDRHECLSWLDSKPSRSVLFLCFGSLGSF---S--SKQLKEMAIGLERSGVKFLWVVRAP 316 (485)
Q Consensus 262 ~~~~~~~~~l~~~~~~~~V~vs~GS~~~~---~--~~~~~~i~~al~~~~~~~i~~~~~~ 316 (485)
+....+..|+...++++.|+||+||.... . ...+..++++++..|.++|..+...
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 34566888999988999999999998843 2 2468889999999999999999764
No 132
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.77 E-value=0.64 Score=45.27 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=36.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
||+++-....|++.=..++.++|+++-|+.+|++++....
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~ 40 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGF 40 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhH
Confidence 5899999999999999999999999988899999976533
No 133
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.72 E-value=1.7 Score=43.05 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
+++|+++-....|++.=..++.++|+++-|+.+|++++..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~ 44 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ 44 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEecc
Confidence 3689999999999999999999999999999999999765
No 134
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.11 E-value=2.7 Score=39.96 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
||+++-..+.|++.=..++.++|+++.|+-+|++++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~ 38 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPP 38 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEECh
Confidence 58999999999999999999999999999999999875
No 135
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.04 E-value=0.26 Score=41.20 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=63.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSP 83 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 83 (485)
+|++++.....|+ ..+++.|.++| ++|++++.....+.. ....++.+..++. +.
T Consensus 1 KIl~i~~~~~~~~---~~~~~~L~~~g--~~V~ii~~~~~~~~~-----------~~~~~i~~~~~~~-----~~----- 54 (139)
T PF13477_consen 1 KILLIGNTPSTFI---YNLAKELKKRG--YDVHIITPRNDYEKY-----------EIIEGIKVIRLPS-----PR----- 54 (139)
T ss_pred CEEEEecCcHHHH---HHHHHHHHHCC--CEEEEEEcCCCchhh-----------hHhCCeEEEEecC-----CC-----
Confidence 4778877776674 57799999999 999999874332111 1234777777752 10
Q ss_pred CCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcch---hHHHHhhhcC-CceEEE
Q 036436 84 ADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNP---AFQVSSSTLS-IPTYYY 141 (485)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~---~~~vA~~~lg-IP~v~~ 141 (485)
...... .. . -.+..++++. +||+|.+...... +..++ +..+ +|.+..
T Consensus 55 k~~~~~----~~-~-~~l~k~ik~~----~~DvIh~h~~~~~~~~~~l~~-~~~~~~~~i~~ 105 (139)
T PF13477_consen 55 KSPLNY----IK-Y-FRLRKIIKKE----KPDVIHCHTPSPYGLFAMLAK-KLLKNKKVIYT 105 (139)
T ss_pred CccHHH----HH-H-HHHHHHhccC----CCCEEEEecCChHHHHHHHHH-HHcCCCCEEEE
Confidence 111111 11 1 2556666666 9999987775542 33355 7788 888854
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.71 E-value=4.6 Score=39.70 Aligned_cols=108 Identities=11% Similarity=-0.013 Sum_probs=65.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeE-EEEcCCCCCCCCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVT-FHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~l~~~~~~ 82 (485)
||+++-....|++.=..++.++|+++-|+.+|++++...... .++ ..|.++ +..++.. ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~-------l~~----~~p~vd~vi~~~~~-------~~- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIP-------ILS----ENPDINALYGLDRK-------KA- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHH-------HHh----cCCCccEEEEeChh-------hh-
Confidence 589999999999999999999999998889999997653321 222 233443 2222211 00
Q ss_pred CCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 83 PADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
......+.... .+...+++ .++|++|.-........++ ...|+|.-+-
T Consensus 62 -~~~~~~~~~~~-----~l~~~lr~----~~yD~vidl~~~~~s~ll~-~l~~a~~riG 109 (344)
T TIGR02201 62 -KAGERKLANQF-----HLIKVLRA----NRYDLVVNLTDQWMVAILV-KLLNARVKIG 109 (344)
T ss_pred -cchHHHHHHHH-----HHHHHHHh----CCCCEEEECCcchHHHHHH-HhcCCCeEEe
Confidence 00000111111 11222333 3899999665455566778 8889997654
No 137
>PHA01630 putative group 1 glycosyl transferase
Probab=94.42 E-value=2.7 Score=41.17 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=61.4
Q ss_pred ccchH---HhhhccCcceEEe---ccC-chhhHHhhhcCCcEEeccccc--chhH---HHHHHHHh-----------hce
Q 036436 349 WAPQV---EVLNHESVGGFVT---HCG-WNSVLEGVCAGVPMLAWPLYA--EQKM---IKAVVVEE-----------MKV 405 (485)
Q Consensus 349 ~~p~~---~lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~--DQ~~---na~~v~~~-----------~G~ 405 (485)
++|+. .+++.+++ +|. ..| ..+++||+++|+|+|+.-..+ |... |.-.+ +. .++
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHV 273 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCccc
Confidence 46644 46888998 663 233 468999999999999986532 2111 11001 00 023
Q ss_pred EEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 406 GLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 406 G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
|..++ .+.+++.+++.+++.|.+-+..+++...-+.... +.-+-++.++++.+.+++
T Consensus 274 G~~v~--------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 274 GYFLD--------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 33322 2567788888888887421113333333222222 246666777777776654
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.77 E-value=0.7 Score=35.56 Aligned_cols=82 Identities=11% Similarity=0.197 Sum_probs=49.4
Q ss_pred ccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhce-EEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHH
Q 036436 367 HCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKV-GLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAV 445 (485)
Q Consensus 367 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~-G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~ 445 (485)
+|-..-+.|++++|+|+|.-.. ......+ +. |. ++..+ +.+++.+++..+++|+. ..++-++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~~---------~~~el~~~i~~ll~~~~--~~~~ia~ 71 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITYN---------DPEELAEKIEYLLENPE--ERRRIAK 71 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEEC---------CHHHHHHHHHHHHCCHH--HHHHHHH
Confidence 4455689999999999999865 3333333 22 42 22222 58999999999999886 1222222
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHH
Q 036436 446 AMKEAAAAAMRDGGSSRVALDNLV 469 (485)
Q Consensus 446 ~l~~~~~~~~~~~g~~~~~~~~l~ 469 (485)
+-.+.+ .+.-+....+++|+
T Consensus 72 ~a~~~v----~~~~t~~~~~~~il 91 (92)
T PF13524_consen 72 NARERV----LKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH----HHhCCHHHHHHHHH
Confidence 222222 33455556666654
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.53 E-value=0.19 Score=42.71 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHHHHHHHHhh
Q 036436 18 SMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPALVYELGELN 97 (485)
Q Consensus 18 P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (485)
-+..|+++|.++| |+|+++++....... . ....++.+..++.... .. ....+. .
T Consensus 6 ~~~~l~~~L~~~G--~~V~v~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~-----~~----~~~~~~-----~ 59 (160)
T PF13579_consen 6 YVRELARALAARG--HEVTVVTPQPDPEDD--------E--EEEDGVRVHRLPLPRR-----PW----PLRLLR-----F 59 (160)
T ss_dssp HHHHHHHHHHHTT---EEEEEEE---GGG---------S--EEETTEEEEEE--S-S-----SS----GGGHCC-----H
T ss_pred HHHHHHHHHHHCC--CEEEEEecCCCCccc--------c--cccCCceEEeccCCcc-----ch----hhhhHH-----H
Confidence 4678999999999 999999865443211 0 1234677777774322 10 000000 1
Q ss_pred chhHHHHHHHhhccCCccEEEEcCCcc-hhHHHHhh-hcCCceEEEec
Q 036436 98 NPNLHETLITISKRSNLKAFVIDFLCN-PAFQVSSS-TLSIPTYYYFT 143 (485)
Q Consensus 98 ~~~~~~ll~~~~~~~~pD~VI~D~~~~-~~~~vA~~-~lgIP~v~~~~ 143 (485)
...+..++ ...+.+||+|.+..... ....++ + ..++|+|....
T Consensus 60 ~~~~~~~l--~~~~~~~Dvv~~~~~~~~~~~~~~-~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 LRRLRRLL--AARRERPDVVHAHSPTAGLVAALA-RRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHHC--HHCT---SEEEEEHHHHHHHHHHH-HHHHT--EEEE-S
T ss_pred HHHHHHHH--hhhccCCeEEEecccchhHHHHHH-HHccCCcEEEEEC
Confidence 12223333 11335999999876332 233355 4 88999987654
No 140
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.14 E-value=8.8 Score=37.52 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=35.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
||+++-..+-|++.=..++.++|++.-|+.+|++++..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~ 38 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPA 38 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEech
Confidence 58999999999999999999999999888999999754
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.90 E-value=1.4 Score=45.22 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=69.7
Q ss_pred cccchHH---hhhccCcceEEe---ccCc-hhhHHhhhcCCc----EEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 348 SWAPQVE---VLNHESVGGFVT---HCGW-NSVLEGVCAGVP----MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 348 ~~~p~~~---lL~~~~~~~~I~---HgG~-gs~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
..+++.+ +++.+++ +|. +-|+ .++.||+++|+| +|+--+.+-. ..+ +-|+.++.
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l----~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL----NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh----CCcEEECC-----
Confidence 4556544 5777888 775 4476 478899999999 7766555422 112 35777777
Q ss_pred CccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 036436 417 GLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFK 473 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (485)
.+.+.++++|.++++.+. ++.+++.+++.+.+. ..+...-++.+++.+.
T Consensus 407 --~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 --YDIDGMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred --CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 579999999999998663 235555666666554 2455677888877664
No 142
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.89 E-value=3.6 Score=39.87 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=41.8
Q ss_pred cchHHhhhccCcceEEeccC-chhhHHhhhcCCcEEecccccchhH---HHHHHHHhhceEEEEecc
Q 036436 350 APQVEVLNHESVGGFVTHCG-WNSVLEGVCAGVPMLAWPLYAEQKM---IKAVVVEEMKVGLAVTRS 412 (485)
Q Consensus 350 ~p~~~lL~~~~~~~~I~HgG-~gs~~eal~~GvP~v~~P~~~DQ~~---na~~v~~~~G~G~~l~~~ 412 (485)
=|+...|+.++. +|.-+. .+.++||+..|+|+.++|...-... ....+. +.|+-..+...
T Consensus 220 nPy~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~-~~g~~r~~~~~ 283 (311)
T PF06258_consen 220 NPYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLE-ERGAVRPFTGW 283 (311)
T ss_pred CcHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHH-HCCCEEECCCc
Confidence 368889999997 555555 5999999999999999998762111 223443 33776666654
No 143
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=92.74 E-value=7.2 Score=37.93 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
||+++-..+.|++.=..++.+.|++.=|+.+|++++..
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 79999999999999999999999999888999999754
No 144
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.50 E-value=1.5 Score=38.21 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=24.2
Q ss_pred CCccEEEEcCCcchhHHHHhhhc-CCceEEEec
Q 036436 112 SNLKAFVIDFLCNPAFQVSSSTL-SIPTYYYFT 143 (485)
Q Consensus 112 ~~pD~VI~D~~~~~~~~vA~~~l-gIP~v~~~~ 143 (485)
..||+||+....-.++.+- +.+ ++|.++++=
T Consensus 65 f~PDvI~~H~GWGe~Lflk-dv~P~a~li~Y~E 96 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLK-DVFPDAPLIGYFE 96 (171)
T ss_pred CCCCEEEEcCCcchhhhHH-HhCCCCcEEEEEE
Confidence 5799999997555566677 888 999998753
No 145
>PLN02939 transferase, transferring glycosyl groups
Probab=91.72 E-value=6 Score=43.91 Aligned_cols=83 Identities=6% Similarity=0.060 Sum_probs=54.6
Q ss_pred CCeEeecccchH---HhhhccCcceEEecc---C-chhhHHhhhcCCcEEeccccc--chhHH--HHHHHHhhceEEEEe
Q 036436 342 RGLVVESWAPQV---EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYA--EQKMI--KAVVVEEMKVGLAVT 410 (485)
Q Consensus 342 ~n~~v~~~~p~~---~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v~~~~G~G~~l~ 410 (485)
.+|.+..+.+.. .+++.+++ ||... | ..+.+||+++|+|.|+....+ |-... ...+.+.-+.|...+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777754 48889998 88642 3 348999999999999876543 22211 011111225677776
Q ss_pred ccCCCCCccCHHHHHHHHHHHhc
Q 036436 411 RSEEGDGLVSSAELEQRVSELMD 433 (485)
Q Consensus 411 ~~~~~~~~~~~~~l~~ai~~vl~ 433 (485)
. .+++.+.++|.+++.
T Consensus 915 ~-------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 T-------PDEQGLNSALERAFN 930 (977)
T ss_pred C-------CCHHHHHHHHHHHHH
Confidence 6 468889999988764
No 146
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.62 E-value=14 Score=36.11 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=37.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
++|+++-...-|++.=.+++-+.|+++.|+.++++++...
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~ 41 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKG 41 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccc
Confidence 6899999999999999999999999999999999997653
No 147
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=91.29 E-value=16 Score=35.98 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
||+++-..+-|++.=..++.++|+++-|+.+|++++..
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~ 39 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPA 39 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEech
Confidence 69999999999999999999999999888999999754
No 148
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.58 E-value=2.2 Score=36.65 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=52.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHHH
Q 036436 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPALV 90 (485)
Q Consensus 11 ~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 90 (485)
...|=-.-+..|+++|+++| |+|+++++....... .. ........ ..... ......+
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G--~~v~v~~~~~~~~~~--------------~~-~~~~~~~~----~~~~~--~~~~~~~ 66 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRG--HEVTVVSPGVKDPIE--------------EE-LVKIFVKI----PYPIR--KRFLRSF 66 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT---EEEEEESS-TTS-S--------------ST-EEEE---T----T-SST--SS--HHH
T ss_pred CCChHHHHHHHHHHHHHHCC--CEEEEEEcCCCccch--------------hh-ccceeeee----ecccc--cccchhH
Confidence 45566677899999999999 999999765443221 11 11111100 00000 1111111
Q ss_pred HHHHHhhchhHHHHHHHhhccCCccEEEEcCCc-chhHHHHhhhcCCceEEEecchh
Q 036436 91 YELGELNNPNLHETLITISKRSNLKAFVIDFLC-NPAFQVSSSTLSIPTYYYFTTAG 146 (485)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~-~~~~~vA~~~lgIP~v~~~~~~~ 146 (485)
. ....+..++++. ++|+|-..... .+....+ -. ++|.+.......
T Consensus 67 ~-----~~~~~~~~i~~~----~~DiVh~~~~~~~~~~~~~-~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 67 F-----FMRRLRRLIKKE----KPDIVHIHGPPAFWIALLA-CR-KVPIVYTIHGPY 112 (177)
T ss_dssp H-----HHHHHHHHHHHH----T-SEEECCTTHCCCHHHHH-HH-CSCEEEEE-HHH
T ss_pred H-----HHHHHHHHHHHc----CCCeEEecccchhHHHHHh-cc-CCCEEEEeCCCc
Confidence 1 234566677777 99999544433 3333344 34 999998776554
No 149
>PRK14099 glycogen synthase; Provisional
Probab=90.05 E-value=6.3 Score=40.89 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=47.9
Q ss_pred EeecccchH-Hhh-hccCcceEEe---ccCc-hhhHHhhhcCCcEEeccccc--chhHHHHHHHHh--hceEEEEeccCC
Q 036436 345 VVESWAPQV-EVL-NHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEE--MKVGLAVTRSEE 414 (485)
Q Consensus 345 ~v~~~~p~~-~lL-~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~--~G~G~~l~~~~~ 414 (485)
.+.+|-... .++ +.+++ ||. +=|. .+.+||+++|+|.|+....+ |-........+. -+.|..++.
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~--- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP--- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC---
Confidence 455663332 233 45777 775 3444 47789999998777764322 221111100000 146887776
Q ss_pred CCCccCHHHHHHHHHH---HhcCch
Q 036436 415 GDGLVSSAELEQRVSE---LMDSEK 436 (485)
Q Consensus 415 ~~~~~~~~~l~~ai~~---vl~~~~ 436 (485)
-+++++.++|.+ +++|++
T Consensus 429 ----~d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 429 ----VTADALAAALRKTAALFADPV 449 (485)
T ss_pred ----CCHHHHHHHHHHHHHHhcCHH
Confidence 478999999997 555654
No 150
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.19 E-value=2.6 Score=43.44 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=63.3
Q ss_pred eecccchHH---hhhccCcceEEe---ccCch-hhHHhhhcCCc----EEecccccchhHHHHHHHHhhceEEEEeccCC
Q 036436 346 VESWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVP----MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (485)
Q Consensus 346 v~~~~p~~~---lL~~~~~~~~I~---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (485)
+.+++++.+ +++.+++ ||. +-|+| +++||+++|+| +|+--+.+-- +...-|..++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~--------~~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA--------EELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccch--------hhcCCCEEECC---
Confidence 335677654 5778888 774 44654 77999999999 5444232210 11234667776
Q ss_pred CCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 036436 415 GDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESF 472 (485)
Q Consensus 415 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (485)
.+.+.++++|.++++++. ++.+++.++.++.+. .-+...-++.++..|
T Consensus 412 ----~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ----YDIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ----CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 468999999999998763 112333333333332 345556777776654
No 151
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=88.49 E-value=15 Score=35.12 Aligned_cols=81 Identities=12% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCeEee-cccc---hHHhhhccCcceEEec--cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 342 RGLVVE-SWAP---QVEVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 342 ~n~~v~-~~~p---~~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
+++.+. .++| +.++|+.++++.|+|+ =|.||+.-.+..|+|.++- .+-+.|.... +. |+=+..+...
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~-e~-gv~Vlf~~d~-- 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT-EQ-GLPVLFTGDD-- 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH-hC-CCeEEecCCc--
Confidence 355433 5666 6779999999999886 5899999999999999987 4455555544 34 8888777777
Q ss_pred CCccCHHHHHHHHHHHh
Q 036436 416 DGLVSSAELEQRVSELM 432 (485)
Q Consensus 416 ~~~~~~~~l~~ai~~vl 432 (485)
++...+.++=+.+.
T Consensus 279 ---L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 ---LDEDIVREAQRQLA 292 (322)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 88888877755443
No 152
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.77 E-value=1.4 Score=45.94 Aligned_cols=91 Identities=15% Similarity=0.277 Sum_probs=63.6
Q ss_pred CeEeecccc--h-HHhhhccCcceEEecc---CchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCC
Q 036436 343 GLVVESWAP--Q-VEVLNHESVGGFVTHC---GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGD 416 (485)
Q Consensus 343 n~~v~~~~p--~-~~lL~~~~~~~~I~Hg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (485)
.|.+.++.. + ..++..+++ +|.-+ |.+|.+||+.+|+|+| .......| +.-.=|..+ .
T Consensus 410 ~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li---~--- 473 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII---D--- 473 (519)
T ss_pred EEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe---C---
Confidence 566777766 2 457778888 88766 6779999999999999 11122233 232334444 2
Q ss_pred CccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHH
Q 036436 417 GLVSSAELEQRVSELMDSEK-GRAVKERAVAMKEAAA 452 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~~~~ 452 (485)
+..+|.++|..+|.+.+ .+.+...+-+.+++..
T Consensus 474 ---d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ---DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ---CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 68899999999999986 6667777777666554
No 153
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.08 E-value=3 Score=43.59 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=51.1
Q ss_pred chHHhhhccCcceEEe---ccCc-hhhHHhhhcCCcEEeccccc-chhHHHHHHHHhh-ceEEEEeccCCCCCccCHHHH
Q 036436 351 PQVEVLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYA-EQKMIKAVVVEEM-KVGLAVTRSEEGDGLVSSAEL 424 (485)
Q Consensus 351 p~~~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~-G~G~~l~~~~~~~~~~~~~~l 424 (485)
+..+++..|++ +|. +=|+ -+++||+++|+|+|.....+ ..... .+...- ..|+.+......+-.-+.+.|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhccCCCceEEEecCCccchHHHHHHH
Confidence 46778888999 665 4465 48999999999999987643 22221 121120 257777643200111356789
Q ss_pred HHHHHHHhcCc
Q 036436 425 EQRVSELMDSE 435 (485)
Q Consensus 425 ~~ai~~vl~~~ 435 (485)
++++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 99999988554
No 154
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.97 E-value=13 Score=33.59 Aligned_cols=146 Identities=10% Similarity=0.082 Sum_probs=80.4
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.++.|+.|.+. ...+..|...|..+.++.+. ..+.+.+......+.+........-+
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~---------------~~~~l~~l~~~~~i~~~~~~~~~~~l 68 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE---------------LTENLVKLVEEGKIRWKQKEFEPSDI 68 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC---------------CCHHHHHHHhCCCEEEEecCCChhhc
Confidence 458888887765 33555666677776555322 11222222222334444444445567
Q ss_pred hccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHH-----HHHHHhhceEEEEeccCCCCCccCHHHHHHH
Q 036436 357 NHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIK-----AVVVEEMKVGLAVTRSEEGDGLVSSAELEQR 427 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na-----~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (485)
..+++ +|.--+.-.+.+.++ .++++-++ |.+..+ ..+ ++=++-+.+.+.. .++ .-+..|++.
T Consensus 69 ~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~-~~g~l~iaIsT~G-~sP-~la~~lr~~ 139 (202)
T PRK06718 69 VDAFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSAL-HRGKLTISVSTDG-ASP-KLAKKIRDE 139 (202)
T ss_pred CCceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEE-EcCCeEEEEECCC-CCh-HHHHHHHHH
Confidence 77887 888877766666554 45554443 332222 223 1213444444332 011 233568888
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHH
Q 036436 428 VSELMDSEKGRAVKERAVAMKEAAAAA 454 (485)
Q Consensus 428 i~~vl~~~~~~~~~~~a~~l~~~~~~~ 454 (485)
|++++ .++...+-+.+.++++.+++.
T Consensus 140 ie~~~-~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 140 LEALY-DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHc-chhHHHHHHHHHHHHHHHHHh
Confidence 88877 334556788888888888765
No 155
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=85.64 E-value=5.7 Score=34.72 Aligned_cols=120 Identities=9% Similarity=-0.006 Sum_probs=59.4
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCC-CCeEEEEcCCCCCCCCCCCCCCCC
Q 036436 7 LYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATA-PSVTFHQLPPPVSRIPDTLRSPAD 85 (485)
Q Consensus 7 ~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~l~~~~~~~~~ 85 (485)
++-.++.||+.=|+.|.+.+.....+++..+++..+.... ..+..+.... ...++..++..-. .. ..
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~-----~k~~~~~~~~~~~~~~~~~~r~r~-v~------q~ 69 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSR-----SKAEQLEKSSSKRHKILEIPRARE-VG------QS 69 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccH-----HHHHHHHHhccccceeeccceEEE-ec------hh
Confidence 3445788999999999999922222255555654433221 1111111000 0112333332100 00 11
Q ss_pred cHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcch--hHHHHhhhc------CCceEEEecc
Q 036436 86 FPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCNP--AFQVSSSTL------SIPTYYYFTT 144 (485)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~--~~~vA~~~l------gIP~v~~~~~ 144 (485)
.....+..+......+.-+ .+. +||+||+..-..+ .+.+| +.+ |.+.|.+-+.
T Consensus 70 ~~~~~~~~l~~~~~~~~il-~r~----rPdvii~nGpg~~vp~~~~~-~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 70 YLTSIFTTLRAFLQSLRIL-RRE----RPDVIISNGPGTCVPVCLAA-KLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred hHhhHHHHHHHHHHHHHHH-HHh----CCCEEEEcCCceeeHHHHHH-HHHHHhhccCCcEEEEEee
Confidence 1122233332233333333 333 8999998774444 44466 888 9999977653
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.14 E-value=27 Score=35.72 Aligned_cols=183 Identities=11% Similarity=0.108 Sum_probs=103.3
Q ss_pred hcccceEEEcCchhhHHHHHHHHHhcccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCc
Q 036436 209 MAKSAGIIVNTFELLQERAIKAMLEGQCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLG 288 (485)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~ 288 (485)
..+.+++++.+...-+. ....+... ....++++|.+...+. +.+.+...+++|
T Consensus 237 ~~~~~~iIv~T~~q~~d-i~~r~~~~------~~~~~ip~g~i~~~~~---------------~~r~~~~~l~~t----- 289 (438)
T TIGR02919 237 ETRNKKIIIPNKNEYEK-IKELLDNE------YQEQISQLGYLYPFKK---------------DNKYRKQALILT----- 289 (438)
T ss_pred ccccCeEEeCCHHHHHH-HHHHhCcc------cCceEEEEEEEEeecc---------------ccCCcccEEEEC-----
Confidence 35677888888542221 11122211 1125677777742111 122334477776
Q ss_pred cCCHHhHHHHHHHHHhCC-CeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEee-cccc--hHHhhhccCcceE
Q 036436 289 SFSSKQLKEMAIGLERSG-VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVE-SWAP--QVEVLNHESVGGF 364 (485)
Q Consensus 289 ~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~-~~~p--~~~lL~~~~~~~~ 364 (485)
..+.++.+....+..+ ..|=+..+.. ..+.+..-.+.+|++.. ++.+ ..+++..|++=+-
T Consensus 290 --~s~~I~~i~~Lv~~lPd~~f~Iga~te--------------~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLd 353 (438)
T TIGR02919 290 --NSDQIEHLEEIVQALPDYHFHIAALTE--------------MSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLD 353 (438)
T ss_pred --CHHHHHHHHHHHHhCCCcEEEEEecCc--------------ccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEE
Confidence 2555666666666654 4443322221 11233221122566655 4566 3669999999888
Q ss_pred EeccCc--hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHH
Q 036436 365 VTHCGW--NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKE 442 (485)
Q Consensus 365 I~HgG~--gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~ 442 (485)
|+||.- .++.||+.+|+|++..=...... ..+ .. |-.... -+.+++.++|.++|++++ .+++
T Consensus 354 in~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~~~-------~~~~~m~~~i~~lL~d~~--~~~~ 417 (438)
T TIGR02919 354 INHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIFEH-------NEVDQLISKLKDLLNDPN--QFRE 417 (438)
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---CceecC-------CCHHHHHHHHHHHhcCHH--HHHH
Confidence 999774 79999999999999875432211 112 11 444444 268999999999999885 2555
Q ss_pred HHHHHHHH
Q 036436 443 RAVAMKEA 450 (485)
Q Consensus 443 ~a~~l~~~ 450 (485)
+..+-++.
T Consensus 418 ~~~~q~~~ 425 (438)
T TIGR02919 418 LLEQQREH 425 (438)
T ss_pred HHHHHHHH
Confidence 44444443
No 157
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=84.17 E-value=3.4 Score=36.75 Aligned_cols=97 Identities=14% Similarity=0.061 Sum_probs=46.6
Q ss_pred CCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHH
Q 036436 10 SPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPAL 89 (485)
Q Consensus 10 ~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~ 89 (485)
..+-|-++-+.+|+++|.++.|++.|.+.+++.. ....+.... .+.+....+|.+ .
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~t------g~~~~~~~~--~~~v~~~~~P~D-------------~--- 83 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPT------GREMARKLL--PDRVDVQYLPLD-------------F--- 83 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CC------HHHHHHGG---GGG-SEEE---S-------------S---
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCc------hHHHHHHhC--CCCeEEEEeCcc-------------C---
Confidence 4567889999999999999977799999876432 111122211 113333335532 1
Q ss_pred HHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcch-hHH-HHhhhcCCceEEEec
Q 036436 90 VYELGELNNPNLHETLITISKRSNLKAFVIDFLCNP-AFQ-VSSSTLSIPTYYYFT 143 (485)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~-~~~-vA~~~lgIP~v~~~~ 143 (485)
...++.+++.+ +||++|.-....| ... .| ++.|||.+.+.-
T Consensus 84 --------~~~~~rfl~~~----~P~~~i~~EtElWPnll~~a-~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 --------PWAVRRFLDHW----RPDLLIWVETELWPNLLREA-KRRGIPVVLVNA 126 (186)
T ss_dssp --------HHHHHHHHHHH------SEEEEES----HHHHHH------S-EEEEEE
T ss_pred --------HHHHHHHHHHh----CCCEEEEEccccCHHHHHHH-hhcCCCEEEEee
Confidence 12445667778 9999986555555 444 56 899999998743
No 158
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.54 E-value=11 Score=32.34 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
|.++|++...|+-|-..-++.++..|.++| +.|-=+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf 39 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGF 39 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeE
Confidence 457999999999999999999999999999 887644
No 159
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.53 E-value=12 Score=36.44 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=34.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCC
Q 036436 3 DTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 3 ~~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~ 45 (485)
.||++++. ||-|-..=..++|-.|++.| ..|.++++.+.++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCc
Confidence 46777776 88999999999999999999 8888887776654
No 160
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=80.53 E-value=2.3 Score=42.33 Aligned_cols=117 Identities=12% Similarity=0.171 Sum_probs=67.9
Q ss_pred CCeEee-cccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccC
Q 036436 342 RGLVVE-SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVS 420 (485)
Q Consensus 342 ~n~~v~-~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (485)
.+++.. +..+..++|..+++ +||=- .+.+.|.+..+.|+|....-.|.+.. ..|.-.......-|.-.-+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ERGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------ccCCCCchHhhCCCceeCC
Confidence 455543 45568899999999 99986 55889999999999988765555522 1133222211110122357
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 036436 421 SAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVE 470 (485)
Q Consensus 421 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (485)
.++|.++|..+++++. .++++-+++.+++.+. .+|.++++.++.+++
T Consensus 323 ~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~~-~Dg~s~eri~~~I~k 369 (369)
T PF04464_consen 323 FEELIEAIENIIENPD--EYKEKREKFRDKFFKY-NDGNSSERIVNYIFK 369 (369)
T ss_dssp HHHHHHHHTTHHHHHH--HTHHHHHHHHHHHSTT---S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCCC-CCchHHHHHHHHHhC
Confidence 8999999999987654 2556666777776542 456666666666553
No 161
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=79.68 E-value=7.1 Score=43.18 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=65.1
Q ss_pred HHhhhccCcceEEec---cCch-hhHHhhhcCCc---EEecc-cccchhHHHHHHHHhhc-eEEEEeccCCCCCccCHHH
Q 036436 353 VEVLNHESVGGFVTH---CGWN-SVLEGVCAGVP---MLAWP-LYAEQKMIKAVVVEEMK-VGLAVTRSEEGDGLVSSAE 423 (485)
Q Consensus 353 ~~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP---~v~~P-~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~ 423 (485)
.++++.+++ ||.- -|+| +..|++++|+| +++++ +.+ .+. .+| -|+.+++ .+.+.
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~----~l~~~allVnP-------~D~~~ 432 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ----SLGAGALLVNP-------WNITE 432 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh----hhcCCeEEECC-------CCHHH
Confidence 357777888 7754 4876 77799999999 44444 332 111 124 5788888 57999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 424 LEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 424 l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
++++|.++|+.+. ++.+++.+++.+.+. .-+...-.+.+++.+.+.
T Consensus 433 lA~AI~~aL~m~~-~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 433 VSSAIKEALNMSD-EERETRHRHNFQYVK-----THSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHH
Confidence 9999999998442 123445555555554 234456677777777655
No 162
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.47 E-value=56 Score=30.78 Aligned_cols=82 Identities=27% Similarity=0.443 Sum_probs=54.0
Q ss_pred CCCeEeecccc---hHHhhhccCcceEEec---cCch-hhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccC
Q 036436 341 DRGLVVESWAP---QVEVLNHESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (485)
Q Consensus 341 ~~n~~v~~~~p---~~~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (485)
..++...++++ ...++..+++ ++.. .|.| ++.||+++|+|+|..... .....+ ..-+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHh-cCCCceE-ecCC-
Confidence 35777788888 3446777777 7776 3554 459999999999766543 222333 2312466 3331
Q ss_pred CCCCccCHHHHHHHHHHHhcCch
Q 036436 414 EGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 414 ~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
...+.+.+++..++++.+
T Consensus 327 -----~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 327 -----GDVEELADALEQLLEDPE 344 (381)
T ss_pred -----CCHHHHHHHHHHHhcCHH
Confidence 258999999999998774
No 163
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.86 E-value=4.3 Score=38.41 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred cccchHHhhhccCcceEEeccCchhhH-HhhhcCCcEEecccccchhH--HHHHHHHhhceEEEEeccCCCCCccCHHHH
Q 036436 348 SWAPQVEVLNHESVGGFVTHCGWNSVL-EGVCAGVPMLAWPLYAEQKM--IKAVVVEEMKVGLAVTRSEEGDGLVSSAEL 424 (485)
Q Consensus 348 ~~~p~~~lL~~~~~~~~I~HgG~gs~~-eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~~~~~~~l 424 (485)
.|-...++|.++++ .|--. ||.. .++-.|+|+|.+|-.+-|+. .|.+=.+-+|+.+.+-..+ +..-
T Consensus 301 sqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~-------aq~a 369 (412)
T COG4370 301 SQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE-------AQAA 369 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc-------hhhH
Confidence 55556667777776 44333 3444 35778999999999988864 5555556778888887743 4444
Q ss_pred HHHHHHHhcCchHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHHHH
Q 036436 425 EQRVSELMDSEKGRAVKERAVA-MKEAAAAAMRDGGSSRVALDNLV 469 (485)
Q Consensus 425 ~~ai~~vl~~~~~~~~~~~a~~-l~~~~~~~~~~~g~~~~~~~~l~ 469 (485)
..+..+++.|++ +.+++++ =++++.+ .|...+..+++-
T Consensus 370 ~~~~q~ll~dp~---r~~air~nGqrRiGq----aGaa~rIAe~l~ 408 (412)
T COG4370 370 AQAVQELLGDPQ---RLTAIRHNGQRRIGQ----AGAARRIAEELG 408 (412)
T ss_pred HHHHHHHhcChH---HHHHHHhcchhhccC----cchHHHHHHHHH
Confidence 555556999997 5555552 2233332 355545555443
No 164
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=77.89 E-value=13 Score=35.16 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=34.5
Q ss_pred eEeecccchHHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc
Q 036436 344 LVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (485)
Q Consensus 344 ~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 388 (485)
+++.+-++-.+++.+++. +||-. .++-+||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTIN-STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHcCCceEEecC
Confidence 344467888999999998 88774 4588999999999999875
No 165
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=77.46 E-value=15 Score=34.15 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=25.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
||++.-=-+. |.--+.+|+++|. .+ ++|+++.|.
T Consensus 2 rILlTNDDGi-~a~Gi~aL~~al~-~~--~dV~VVAP~ 35 (252)
T COG0496 2 RILLTNDDGI-HAPGIRALARALR-EG--ADVTVVAPD 35 (252)
T ss_pred eEEEecCCcc-CCHHHHHHHHHHh-hC--CCEEEEccC
Confidence 4555555544 7777889999999 88 999999654
No 166
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=75.55 E-value=6.7 Score=32.89 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=36.5
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 1 MK-DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 1 m~-~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
|+ ++|++.+.++.+|-.-..-++..|.++| .+|++.....+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G--~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAG--FEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCC--CEEEECCCCCC
Confidence 54 5999999999999999999999999999 99999965443
No 167
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=75.10 E-value=40 Score=29.06 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=21.9
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..++++.|.|-| .+.+|...++|+|++.
T Consensus 59 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 59 GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 345578877754 6778999999999995
No 168
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=75.07 E-value=27 Score=32.74 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
|++|||+.-=.+. |.--+.+|+++|.+.| +|+++.|.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g---~V~VvAP~ 40 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG---RVTVVAPA 40 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC---CEEEEcCC
Confidence 4567777766555 5567889999999888 48888554
No 169
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=74.93 E-value=47 Score=28.68 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.4
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44588888855 7789999999999995
No 170
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=74.51 E-value=17 Score=33.99 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
|+.+|+++..-+-| ..||+.|.++| ..|+..+..
T Consensus 1 ~~~~IlvlgGT~eg-----r~la~~L~~~g--~~v~~Svat 34 (248)
T PRK08057 1 MMPRILLLGGTSEA-----RALARALAAAG--VDIVLSLAG 34 (248)
T ss_pred CCceEEEEechHHH-----HHHHHHHHhCC--CeEEEEEcc
Confidence 56788888665554 57899999999 888776554
No 171
>PLN02470 acetolactate synthase
Probab=73.67 E-value=27 Score=37.21 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=52.8
Q ss_pred ecCCCccCCHHh--HHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeecc--------cc
Q 036436 283 CFGSLGSFSSKQ--LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESW--------AP 351 (485)
Q Consensus 283 s~GS~~~~~~~~--~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~n~~v~~~--------~p 351 (485)
+|||....+... -..+++.|+..|.+.|+-+.+... ..+.+.+ +.+++.+..- +=
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~--------------~~l~dal~~~~~i~~i~~rhE~~A~~~A 67 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS--------------MEIHQALTRSNCIRNVLCRHEQGEVFAA 67 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc--------------HHHHHHHhccCCceEEEeccHHHHHHHH
Confidence 577766333222 466888999999988888876511 1121111 1123322211 11
Q ss_pred hHHhhhccCcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 352 QVEVLNHESVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 352 ~~~lL~~~~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
...-...-..+++++|.|-| .+.+|...++|+|++.
T Consensus 68 dgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 68 EGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 11111123456699998855 7889999999999995
No 172
>PRK07206 hypothetical protein; Provisional
Probab=73.20 E-value=11 Score=38.30 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
|+++++++.....| ..++++++++| +++..++..
T Consensus 1 ~~k~~liv~~~~~~-----~~~~~a~~~~G--~~~v~v~~~ 34 (416)
T PRK07206 1 MMKKVVIVDPFSSG-----KFLAPAFKKRG--IEPIAVTSS 34 (416)
T ss_pred CCCeEEEEcCCchH-----HHHHHHHHHcC--CeEEEEEcC
Confidence 78899999875443 46899999999 998888654
No 173
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=73.08 E-value=50 Score=28.13 Aligned_cols=137 Identities=19% Similarity=0.271 Sum_probs=71.0
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhc
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNH 358 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~ 358 (485)
.|.|-+||.. +....+++...|+..|..+-+.+-+.+ -.|+.+. .++....- ..
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH------------R~p~~l~-----------~~~~~~~~-~~ 55 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH------------RTPERLL-----------EFVKEYEA-RG 55 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT------------TSHHHHH-----------HHHHHTTT-TT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc------------CCHHHHH-----------HHHHHhcc-CC
Confidence 4566677775 677788899999999876655543321 1233222 11111110 12
Q ss_pred cCcceEEeccCch----hhHHhhhcCCcEEecccccchhH----HHHHHHHhhceEEEEec--cCCCCCccCHHHHHHHH
Q 036436 359 ESVGGFVTHCGWN----SVLEGVCAGVPMLAWPLYAEQKM----IKAVVVEEMKVGLAVTR--SEEGDGLVSSAELEQRV 428 (485)
Q Consensus 359 ~~~~~~I~HgG~g----s~~eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~G~~l~~--~~~~~~~~~~~~l~~ai 428 (485)
+++ ||.=.|.. ++..++- -.|+|.+|....+.. ....+.---|+++..-. .. .++..++-.|
T Consensus 56 ~~v--iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~-----~nAA~~A~~I 127 (150)
T PF00731_consen 56 ADV--IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNG-----FNAALLAARI 127 (150)
T ss_dssp ESE--EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHH-----HHHHHHHHHH
T ss_pred CEE--EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCc-----hHHHHHHHHH
Confidence 344 88877764 4444443 789999998765332 23333222255543332 22 3444444444
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHH
Q 036436 429 SELMDSEKGRAVKERAVAMKEAAAA 453 (485)
Q Consensus 429 ~~vl~~~~~~~~~~~a~~l~~~~~~ 453 (485)
.. +.|++ ++++.+.+++++++
T Consensus 128 La-~~d~~---l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 128 LA-LKDPE---LREKLRAYREKMKE 148 (150)
T ss_dssp HH-TT-HH---HHHHHHHHHHHHHH
T ss_pred Hh-cCCHH---HHHHHHHHHHHHHc
Confidence 33 34666 88888888888764
No 174
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=72.93 E-value=16 Score=40.11 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=66.9
Q ss_pred eecccchHH---hhhccCcceEEec---cCc-hhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCc
Q 036436 346 VESWAPQVE---VLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 346 v~~~~p~~~---lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
+.+++++.+ +++.+++ |+.. -|+ .++.|++++|+|-..+|+.++----+..+ .-|+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-------
Confidence 446777654 6677887 7754 355 48899999987622222222111111122 23777777
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 419 VSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
.+.+.++++|.+++..+.. +.+++.+++.+.+. ..+...-++.+++.+.+.
T Consensus 413 ~d~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPEE-EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 5799999999999986531 23444444444443 245557777777777765
No 175
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=72.14 E-value=1e+02 Score=30.18 Aligned_cols=82 Identities=12% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCeEe-ecccc---hHHhhhccCcceEEec--cCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 342 RGLVV-ESWAP---QVEVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 342 ~n~~v-~~~~p---~~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
+++.+ .+++| +.++|..|+++.|.|. =|.|++.-.|..|+|+++- .+-+.+-. +++. |+=+.-..++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~-l~~~-~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQD-LKEQ-GIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHH-HHhC-CCeEEecccc--
Confidence 46654 46777 5669999999888875 5899999999999999875 44455544 4344 8877777777
Q ss_pred CCccCHHHHHHHHHHHhc
Q 036436 416 DGLVSSAELEQRVSELMD 433 (485)
Q Consensus 416 ~~~~~~~~l~~ai~~vl~ 433 (485)
++...|+++=+.+..
T Consensus 318 ---L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 ---LDEALVREAQRQLAN 332 (360)
T ss_pred ---CCHHHHHHHHHHHhh
Confidence 999999999887764
No 176
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=71.99 E-value=1.3e+02 Score=31.25 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=70.9
Q ss_pred eEeecccchHH---hhhccCcceEEe---ccCchhh-HHhhhcCC----cEEecccccchhHHHHHHHHhhceEEEEecc
Q 036436 344 LVVESWAPQVE---VLNHESVGGFVT---HCGWNSV-LEGVCAGV----PMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (485)
Q Consensus 344 ~~v~~~~p~~~---lL~~~~~~~~I~---HgG~gs~-~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (485)
+.+.+.+|+.+ ++..+++ ++. .-|+|-+ .|.++++. |+|+--+.+ |+ +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC-
Confidence 34556788766 5556777 554 3588855 49999877 555543332 11 24455788888
Q ss_pred CCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 036436 413 EEGDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (485)
Q Consensus 413 ~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (485)
.+.+.++++|.++|+.+. ++-++|.+++.+.+. ..+...=.+.+++.+..
T Consensus 433 ------~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ------YDPVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSP 482 (487)
T ss_pred ------CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhh
Confidence 679999999999998874 234556666666655 23444667777777654
No 177
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.82 E-value=15 Score=33.93 Aligned_cols=99 Identities=8% Similarity=0.134 Sum_probs=53.3
Q ss_pred CCcEEEEecCCCc---cCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecc--c
Q 036436 276 SRSVLFLCFGSLG---SFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESW--A 350 (485)
Q Consensus 276 ~~~~V~vs~GS~~---~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~--~ 350 (485)
+++.|.|..|+.. ..+.+.+.++++.+...+..+++..+.. +.....-+.+.+......+.+.+- +
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE---------EQEKEIADQIAAGLQNPVINLAGKTSL 174 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH---------HHHHHHHHHHHTTHTTTTEEETTTS-H
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch---------HHHHHHHHHHHHhcccceEeecCCCCH
Confidence 3447777777755 6678889999999988886655443331 000111111111111112333232 2
Q ss_pred c-hHHhhhccCcceEEeccCchhhHHhhhcCCcEEec
Q 036436 351 P-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (485)
Q Consensus 351 p-~~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 386 (485)
. ..+++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 175 ~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 175 RELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 2 3568889998 9987 567888899999999998
No 178
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=71.44 E-value=7 Score=31.66 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=32.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
||++.+.++..|...+.-++..|.++| ++|.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G--~~V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAG--FEVIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCC--CEEEECCC
Confidence 589999999999999999999999999 99988743
No 179
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.07 E-value=59 Score=29.30 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=78.3
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.+++|+.|.+. ..-+..|...|..+.++.+.. .+.+.+-....++.+..--.+...+
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~---------------~~~l~~l~~~~~i~~~~~~~~~~dl 67 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL---------------ESELTLLAEQGGITWLARCFDADIL 67 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC---------------CHHHHHHHHcCCEEEEeCCCCHHHh
Confidence 348888877665 334455666787776554321 1222221122244442211223456
Q ss_pred hccCcceEEeccCchhhHH-----hhhcCCcEEecc--cccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHH
Q 036436 357 NHESVGGFVTHCGWNSVLE-----GVCAGVPMLAWP--LYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVS 429 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~e-----al~~GvP~v~~P--~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~ 429 (485)
..+++ +|..-|...+.+ |-..|+|+-++- -..| +.+-..+ ++=++-+.+.+.. .++ .-...|++.|+
T Consensus 68 ~~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G-~sP-~la~~lr~~ie 141 (205)
T TIGR01470 68 EGAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGG-AAP-VLARLLRERIE 141 (205)
T ss_pred CCcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCC-CCc-HHHHHHHHHHH
Confidence 67777 888888764443 345688885442 2223 2222233 2213444444332 012 23356888888
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHHH
Q 036436 430 ELMDSEKGRAVKERAVAMKEAAAAA 454 (485)
Q Consensus 430 ~vl~~~~~~~~~~~a~~l~~~~~~~ 454 (485)
+++... ...+-+.+.++++.+++.
T Consensus 142 ~~l~~~-~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 142 TLLPPS-LGDLATLAATWRDAVKKR 165 (205)
T ss_pred Hhcchh-HHHHHHHHHHHHHHHHhh
Confidence 888533 345777777788777755
No 180
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=68.13 E-value=57 Score=28.19 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=21.9
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.+++++|+|-| .+.+|...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 44488888855 6779999999999994
No 181
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=67.76 E-value=22 Score=36.26 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=26.7
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEe
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
++.+.+++. +||++|.... ...+| +++|||++.+.
T Consensus 368 e~~~~i~~~----~pDliiG~s~---~~~~a-~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE----PVDLLIGNTY---GKYIA-RDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc----CCCEEEECcc---HHHHH-HHhCCCEEEee
Confidence 445556666 9999999863 57788 99999998653
No 182
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=67.51 E-value=35 Score=31.96 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
+++..-|+.|...-...+|..+++.| ++|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g--~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQG--KKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCC--CCceEEeCCC
Confidence 44555699999999999999999999 9999997654
No 183
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=67.11 E-value=43 Score=31.41 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 19 MVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 19 ~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
-..|++.|.++| |+|+..+.+..
T Consensus 12 gr~la~~L~~~g--~~v~~s~~t~~ 34 (256)
T TIGR00715 12 SRAIAKGLIAQG--IEILVTVTTSE 34 (256)
T ss_pred HHHHHHHHHhCC--CeEEEEEccCC
Confidence 678999999999 99998876543
No 184
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=65.63 E-value=13 Score=27.65 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=31.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
+-++++..+...|...+..+|+.|++.| ..|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G--~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQG--YAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCC--CEEEEE
Confidence 5789999999999999999999999999 888766
No 185
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=65.47 E-value=36 Score=32.64 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=37.9
Q ss_pred hccCcceEEeccCchhhHHhhhc----CCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
..+++ +|+-||-||+++++.. ++|++.+-.- . +| -..+ ++.+++.+++++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G------------~--lG---FL~~-----~~~~~~~~~l~~~~ 117 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG------------R--LG---FITD-----IPLDDMQETLPPML 117 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC------------C--cc---cccc-----CCHHHHHHHHHHHH
Confidence 35677 9999999999999773 7788877421 1 11 1112 56788888888887
Q ss_pred cCc
Q 036436 433 DSE 435 (485)
Q Consensus 433 ~~~ 435 (485)
+++
T Consensus 118 ~g~ 120 (291)
T PRK02155 118 AGN 120 (291)
T ss_pred cCC
Confidence 655
No 186
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=64.53 E-value=20 Score=32.98 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=24.6
Q ss_pred CccEEE-EcCCc-chhHHHHhhhcCCceEEEecchhHh
Q 036436 113 NLKAFV-IDFLC-NPAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 113 ~pD~VI-~D~~~-~~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
-||+++ .|+.. .-+..=| .++|||+|.++-+.+-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA-~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEA-NKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHH-HHcCCCEEEEecCCCCC
Confidence 499887 56533 2356677 99999999987655433
No 187
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=64.44 E-value=1.3e+02 Score=28.32 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=48.2
Q ss_pred HHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcC-CCeEe----ecccchHHhhhccCcceEEeccC-ch
Q 036436 298 MAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKD-RGLVV----ESWAPQVEVLNHESVGGFVTHCG-WN 371 (485)
Q Consensus 298 i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~n~~v----~~~~p~~~lL~~~~~~~~I~HgG-~g 371 (485)
+.+.+++.|..|+..+.....+ .+-.-+..++.. .++++ .++=|+-+.|+.++. +|.-.- .|
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~----------~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSin 256 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPD----------TVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSIN 256 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcH----------HHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhh
Confidence 5566677888888887554111 111111222221 22222 145589999999998 776665 58
Q ss_pred hhHHhhhcCCcEEec
Q 036436 372 SVLEGVCAGVPMLAW 386 (485)
Q Consensus 372 s~~eal~~GvP~v~~ 386 (485)
...||++.|+|+-+.
T Consensus 257 M~sEAasTgkPv~~~ 271 (329)
T COG3660 257 MCSEAASTGKPVFIL 271 (329)
T ss_pred hhHHHhccCCCeEEE
Confidence 899999999998664
No 188
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=63.94 E-value=89 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=21.9
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEeccc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P~ 388 (485)
.++++.|.|-| .+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 34488887644 77888999999999963
No 189
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=63.65 E-value=1.6e+02 Score=29.32 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=35.4
Q ss_pred EEeccCchhhHHhhhcCCcEE-----------ecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 364 FVTHCGWNSVLEGVCAGVPML-----------AWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 364 ~I~HgG~gs~~eal~~GvP~v-----------~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
+-|+ |..++..||.+|.|+- .+|..+. |+.+++..+-..+. .++.++|..+|.+++
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~---~tf~~a~~~~d~vv---------vV~~~ei~aaI~~l~ 314 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGE---NTFELAQKLVDRVV---------VVEDDEIAAAILRLF 314 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhH---HHHHHHHhcCceEE---------EeccHHHHHHHHHHH
Confidence 4444 6778888888888763 2222233 33333322122222 166788999999999
Q ss_pred cCch
Q 036436 433 DSEK 436 (485)
Q Consensus 433 ~~~~ 436 (485)
+|++
T Consensus 315 edek 318 (457)
T KOG1250|consen 315 EDEK 318 (457)
T ss_pred Hhhh
Confidence 8775
No 190
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=63.25 E-value=29 Score=32.23 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=39.3
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhc
Q 036436 4 TIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASV 57 (485)
Q Consensus 4 ~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~ 57 (485)
+-.|+.. |+-|-..=-..||-.|++-+ +.|.++++.+.++....|.......
T Consensus 20 KwifVGGKGGVGKTTcs~sLAvqla~~r--~~vLiISTDPAHNlSDAF~qkftk~ 72 (323)
T KOG2825|consen 20 KWIFVGGKGGVGKTTCSCSLAVQLAKVR--ESVLIISTDPAHNLSDAFSQKFTKT 72 (323)
T ss_pred eEEEEcCcCCcCccchhhHHHHHHhccC--CceEEeecCcccchHHHHHHHhcCC
Confidence 3444444 78888889999999999999 9999999988887654444444444
No 191
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.13 E-value=14 Score=34.77 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=37.0
Q ss_pred ccCcceEEeccCchhhHHhhh------cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHH
Q 036436 358 HESVGGFVTHCGWNSVLEGVC------AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~v 431 (485)
.+++ +|+-||=||++.+++ .++|++.+-. |..--..+ +.++++.++++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-----------------G~lGFL~~-----~~~~~~~~~l~~i 90 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT-----------------GHLGFYTD-----WRPFEVDKLVIAL 90 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC-----------------CCceeccc-----CCHHHHHHHHHHH
Confidence 4566 999999999999986 5889988842 21111112 5667777777777
Q ss_pred hcCc
Q 036436 432 MDSE 435 (485)
Q Consensus 432 l~~~ 435 (485)
++++
T Consensus 91 ~~g~ 94 (265)
T PRK04885 91 AKDP 94 (265)
T ss_pred HcCC
Confidence 7654
No 192
>PRK06321 replicative DNA helicase; Provisional
Probab=61.98 E-value=6.6 Score=40.47 Aligned_cols=37 Identities=11% Similarity=0.233 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..-.+.+|...+ +.| ..|.|++-+-.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g--~~v~~fSLEMs 266 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNR--LPVGIFSLEMT 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCC
Confidence 57778899999999999999987 458 89999976644
No 193
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.81 E-value=39 Score=30.25 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
+-|+|+...+-|-..=...||..++.+| ..|.+++...++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKG--KKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCC
Confidence 4578899999999999999999999999 999999877664
No 194
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.93 E-value=41 Score=34.24 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=25.9
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
++.+.+++. +||+||.+.. ...+| +++|||++.+
T Consensus 362 el~~~i~~~----~pdliig~~~---~~~~a-~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEE----PVDLLIGNSH---GRYLA-RDLGIPLVRV 395 (428)
T ss_pred HHHHHhhcc----CCCEEEECch---hHHHH-HhcCCCEEEe
Confidence 444555555 8999999974 46788 9999999854
No 195
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=59.78 E-value=20 Score=28.81 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
|+++.+.+..-|-.-+..|+..|.++| |+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G--~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAG--HEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTT--BEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCC--CeEEEECC
Confidence 789999999999999999999999999 99999843
No 196
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.14 E-value=39 Score=34.05 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~ 45 (485)
-|+++..-+.|-..-.-.||+.|+++| +.|.++++..++.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~Rp 141 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRP 141 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcC--CceEEEecccCCh
Confidence 588888899999999999999999999 9999998877765
No 197
>PRK06988 putative formyltransferase; Provisional
Probab=58.85 E-value=51 Score=31.97 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
|++||+|+..+.. .+...+.|.++| |+|..+.+.+.
T Consensus 1 ~~mkIvf~Gs~~~-----a~~~L~~L~~~~--~~i~~Vvt~~d 36 (312)
T PRK06988 1 MKPRAVVFAYHNV-----GVRCLQVLLARG--VDVALVVTHED 36 (312)
T ss_pred CCcEEEEEeCcHH-----HHHHHHHHHhCC--CCEEEEEcCCC
Confidence 6679999866653 345566777889 99888876543
No 198
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=58.69 E-value=1.3e+02 Score=26.71 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEc
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~ 39 (485)
-|.+++..+.|-....+.+|-+.+.+| ++|.++=
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G--~~V~ivQ 57 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHG--KKVGVVQ 57 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEEE
Confidence 688999999999999999999999999 9999984
No 199
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=58.64 E-value=27 Score=30.32 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=29.4
Q ss_pred HHhhchhHHHHHHHhhccCCccEEEEcCCcchhH-H--HHh-hhc-CCceEEEec
Q 036436 94 GELNNPNLHETLITISKRSNLKAFVIDFLCNPAF-Q--VSS-STL-SIPTYYYFT 143 (485)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~-~--vA~-~~l-gIP~v~~~~ 143 (485)
.....+.+.+++++. +||+||+-..+...+ . +-+ ..+ ++|++.+.|
T Consensus 74 ~~~~~~~l~~~l~~~----~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 74 SRLFARRLIRLLREF----QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHhhc----CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 334556777777777 999999988664444 2 220 234 588876655
No 200
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=57.99 E-value=74 Score=29.74 Aligned_cols=114 Identities=5% Similarity=-0.055 Sum_probs=0.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
+|||+.-=.+. |---+.+|+++|++ + |+|+++ .+..++. ...........++...+.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~--~~V~Vv--AP~~~qS-----g~g~ait~~~pl~~~~~~~~~~-------- 61 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-K--HEVFVV--APDKERS-----ATGHAITIRVPLWAKKVFISER-------- 61 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-C--CcEEEE--ccCCCCc-----cccccccCCCCceEEEeecCCC--------
Q ss_pred CCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEc-------------CCcchhHHHHhhhcCCceEEEe
Q 036436 83 PADFPALVYELGELNNPNLHETLITISKRSNLKAFVID-------------FLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D-------------~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
......-..-.+-..-.+..++.+ +||+||+. ..+..++.-| -.+|||.+.++
T Consensus 62 -~~~y~v~GTPaDcV~lal~~~~~~-----~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea-~~~GiPaiA~S 127 (253)
T PRK13935 62 -FVAYATTGTPADCVKLGYDVIMDK-----KVDLVISGINRGPNLGTDVLYSGTVSGALEG-AMMGVPSIAIS 127 (253)
T ss_pred -ccEEEECCcHHHHHHHHHHhhccC-----CCCEEEeCCccCCCCCcCCcccHhHHHHHHH-HhcCCCeEEEE
No 201
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=57.26 E-value=1.3e+02 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=30.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
-|.+++.++.|-..-.+.+|-+.+.+| ++|.|+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g--~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHG--YRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEE
Confidence 367889999999999999999999999 999995
No 202
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=56.77 E-value=38 Score=32.71 Aligned_cols=39 Identities=8% Similarity=0.029 Sum_probs=31.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
-++|..-|+-|-..=..++|..++++| ++|.+++..+.+
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAH 41 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTT
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCc
Confidence 344555599999999999999999999 999999877654
No 203
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=56.72 E-value=80 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=31.0
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 2 KDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 2 ~~~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
|+.|++.+. ||-|-..=...||..|++.| .+|+.+-.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G--~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLG--ESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCC--CcEEEEeC
Confidence 146666665 99999999999999999999 99998853
No 204
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.35 E-value=43 Score=32.53 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=35.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~ 45 (485)
-|+|+..-+.|-..-.-.||+.|.+.| +.|.++.+.+++.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g--~~VllaA~DTFRA 180 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQG--KSVLLAAGDTFRA 180 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCC--CeEEEEecchHHH
Confidence 578889999999999999999999999 9999998776643
No 205
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=55.99 E-value=89 Score=33.13 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=49.6
Q ss_pred ecCCCccCCH-HhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeeccc-chHHh----
Q 036436 283 CFGSLGSFSS-KQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWA-PQVEV---- 355 (485)
Q Consensus 283 s~GS~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~n~~v~~~~-p~~~l---- 355 (485)
|.||...... ..-..+++.|+..|.+.|.-+.+.. . ..+.+.+ +.+++.+..-. .+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~----------~----~~l~dal~~~~~i~~i~~~hE~~A~~~Ad 68 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA----------I----LPLYDALSQSTQIRHILARHEQGAGFIAQ 68 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc----------c----HHHHHHHhccCCceEEEeccHHHHHHHHH
Confidence 3455543333 3356688888888888887776641 0 1122222 11233222110 01111
Q ss_pred ---hhccCcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 356 ---LNHESVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 356 ---L~~~~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
...-..+++++|.|-| .+.+|...++|+|++.
T Consensus 69 gyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 69 GMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 1112344488887755 7899999999999984
No 206
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.64 E-value=21 Score=34.13 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=37.7
Q ss_pred hhccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHH
Q 036436 356 LNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 356 L~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~v 431 (485)
...+++ +|+-||-||++.++. .++|++.+-. |..---.+ ++.+++.++++++
T Consensus 62 ~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~-----------------G~lGFLt~-----~~~~~~~~~l~~i 117 (287)
T PRK14077 62 FKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA-----------------GHLGFLTD-----ITVDEAEKFFQAF 117 (287)
T ss_pred ccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC-----------------CCcccCCc-----CCHHHHHHHHHHH
Confidence 345677 999999999998865 4788888732 11111122 5677788888887
Q ss_pred hcCc
Q 036436 432 MDSE 435 (485)
Q Consensus 432 l~~~ 435 (485)
++++
T Consensus 118 ~~g~ 121 (287)
T PRK14077 118 FQGE 121 (287)
T ss_pred HcCC
Confidence 7654
No 207
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=55.33 E-value=1.1e+02 Score=29.46 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=35.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
++|.+...|+-|-=.=.-+|+++|.++| |+|-++...+..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G--~rVaVlAVDPSS 91 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERG--HRVAVLAVDPSS 91 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCC--cEEEEEEECCCC
Confidence 4788999999999999999999999999 999998755443
No 208
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=54.69 E-value=79 Score=30.88 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
|.=++.|++|-+-=.+.|++.|.++| ++|.+++-....
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G--~~~~IlSRGYg~ 77 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARG--YRPAILSRGYGR 77 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcC--CceEEEcCCCCC
Confidence 44467799999999999999999999 999999765443
No 209
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=54.37 E-value=65 Score=27.73 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=27.1
Q ss_pred cchHHhhhccCcceEEeccCchhhHH---hhhcCCcEEeccc
Q 036436 350 APQVEVLNHESVGGFVTHCGWNSVLE---GVCAGVPMLAWPL 388 (485)
Q Consensus 350 ~p~~~lL~~~~~~~~I~HgG~gs~~e---al~~GvP~v~~P~ 388 (485)
-+-..++...+-..++--||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 34455555444455667789998655 5889999999985
No 210
>PRK00784 cobyric acid synthase; Provisional
Probab=54.28 E-value=1.6e+02 Score=30.66 Aligned_cols=36 Identities=8% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 1 MKDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 1 m~~~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
|+++|++... ..-|-..-.+.|++.|+++| .+|..+
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G--~~v~~~ 37 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRG--YRVAPF 37 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEecc
Confidence 6667877766 45899999999999999999 998877
No 211
>PRK05973 replicative DNA helicase; Provisional
Probab=53.90 E-value=56 Score=30.23 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..=.+.++...+++| ..|.|++.+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~G--e~vlyfSlEes 103 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSG--RTGVFFTLEYT 103 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEEeCC
Confidence 67778899999999999999998899 99999977644
No 212
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=53.65 E-value=62 Score=28.77 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=59.6
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhc
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNH 358 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~ 358 (485)
..++.-.... ...++-.++++.+...+..+|+..|. ...+.+.|.++++.+=+=+ |
T Consensus 53 t~~~~~k~~~-~r~~~d~~l~~~l~~~~~dlvvLAGy------------MrIL~~~fl~~~~grIlNI-----------H 108 (200)
T COG0299 53 TVVLDRKEFP-SREAFDRALVEALDEYGPDLVVLAGY------------MRILGPEFLSRFEGRILNI-----------H 108 (200)
T ss_pred EEEeccccCC-CHHHHHHHHHHHHHhcCCCEEEEcch------------HHHcCHHHHHHhhcceEec-----------C
Confidence 4444444333 23334556999999999988887755 3556777877776543333 8
Q ss_pred cCcceEEeccCchhhHHhhhcCCcEEeccc
Q 036436 359 ESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (485)
Q Consensus 359 ~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 388 (485)
|++ .=.++|..+..+|+.+|+..-.+-.
T Consensus 109 PSL--LP~f~G~h~~~~A~~aG~k~sG~TV 136 (200)
T COG0299 109 PSL--LPAFPGLHAHEQALEAGVKVSGCTV 136 (200)
T ss_pred ccc--ccCCCCchHHHHHHHcCCCccCcEE
Confidence 888 8899999999999999998766654
No 213
>PRK05595 replicative DNA helicase; Provisional
Probab=53.64 E-value=6.9 Score=40.08 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..=.+.+|..++ +.| +.|.|++.+-.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlEms 241 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLEMS 241 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecCCC
Confidence 56778899999999999999875 569 99999976644
No 214
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=53.51 E-value=44 Score=30.48 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=29.7
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTS--PGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~--~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
+++++++ ++-|-..-...|+-+|+++| +.|.++-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~G--kKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLG--KKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcC--CeEEEEecC
Confidence 4555555 78889999999999999999 999998543
No 215
>PHA02542 41 41 helicase; Provisional
Probab=53.34 E-value=17 Score=37.50 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=32.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
+++..-|+.|-..=.+.+|...++.| +.|.|++-+-..
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g--~~Vl~fSLEM~~ 230 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQG--YNVLYISMEMAE 230 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEEeccCCH
Confidence 56777899999999999999999899 999999766443
No 216
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=53.12 E-value=22 Score=29.26 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
|||++.-.|+.+=+. ...+.++|.++| ++|.++.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g--~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAG--WEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTT--SEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCC--CEEEEEECCcH
Confidence 578888888877666 999999999999 99999876533
No 217
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=52.61 E-value=42 Score=28.89 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=27.3
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEE
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVV 313 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~ 313 (485)
.+|+|+||........++..+.++...+.--|+.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999987777778888999988875334443
No 218
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=52.20 E-value=8.4 Score=39.17 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~ 43 (485)
+++...|+.|-..=.+.+|..++ +.| +.|.|++.+-.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~ 234 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMS 234 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCC
Confidence 57778899999999999998887 779 99999976644
No 219
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.01 E-value=26 Score=33.57 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=40.3
Q ss_pred HhhhccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHH
Q 036436 354 EVLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVS 429 (485)
Q Consensus 354 ~lL~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~ 429 (485)
.+...+++ +|+=||=||++.++. .++|++.+-. |..--..+ ++++++.++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~-----------------G~lGFLt~-----~~~~~~~~~l~ 115 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT-----------------GRLGFLAT-----VSKEEIEETID 115 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec-----------------CCCCcccc-----cCHHHHHHHHH
Confidence 33345677 999999999999977 4789888833 11111122 66788888888
Q ss_pred HHhcCc
Q 036436 430 ELMDSE 435 (485)
Q Consensus 430 ~vl~~~ 435 (485)
+++++.
T Consensus 116 ~i~~g~ 121 (292)
T PRK01911 116 ELLNGD 121 (292)
T ss_pred HHHcCC
Confidence 888765
No 220
>PRK08760 replicative DNA helicase; Provisional
Probab=51.11 E-value=29 Score=35.89 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~-rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..=.+.+|...+. .| +.|.|++.+-.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs 269 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMS 269 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCC
Confidence 677788999999999999998874 58 89999976644
No 221
>PRK05748 replicative DNA helicase; Provisional
Probab=51.04 E-value=11 Score=38.76 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~~ 44 (485)
+++...|+.|-..=.+.+|...+ +.| ..|.|++.+-..
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms~ 244 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMGA 244 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCCH
Confidence 67788899999999999999986 569 999999766443
No 222
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.40 E-value=92 Score=29.92 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=39.1
Q ss_pred hccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 357 NHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
..+++ +|+=||-||+++++. .++|++.+... + +| -..+ ++++++.++|.+++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lG---Fl~~-----~~~~~~~~~l~~~~ 116 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LG---FLTD-----IRPDELEFKLAEVL 116 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--cc---cccc-----CCHHHHHHHHHHHH
Confidence 34666 999999999999975 47788888541 1 11 1122 67888999999888
Q ss_pred cCc
Q 036436 433 DSE 435 (485)
Q Consensus 433 ~~~ 435 (485)
+++
T Consensus 117 ~g~ 119 (295)
T PRK01231 117 DGH 119 (295)
T ss_pred cCC
Confidence 654
No 223
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=50.34 E-value=45 Score=33.91 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
+|+.++..+.. ...+++.|.+-| -+|..+.+.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elG--mevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESG--ADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCC--CEEEEEecC
Confidence 36666666655 888999999999 999887554
No 224
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=50.31 E-value=1e+02 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
++||++++.+..+-+. +|.+++.+.+-.++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 1679998887754444 566667766422677776544
No 225
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=49.52 E-value=78 Score=29.03 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~r-G~~h~Vt~~~~~~~ 43 (485)
+++...|+.|=..=.+.++..++.. | ..|.|++.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~E~~ 53 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSLEMS 53 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCCCC
Confidence 5667778999999999999998877 9 99999987644
No 226
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.33 E-value=28 Score=33.87 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcchh------HH----HHhhhcCCceEEE
Q 036436 90 VYELGELNNPNLHETLITISKRSNLKAFVIDFLCNPA------FQ----VSSSTLSIPTYYY 141 (485)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~------~~----vA~~~lgIP~v~~ 141 (485)
|.+..+.....+.++++++ +||++|+.+.+.++ .. +. ++++||.++-
T Consensus 61 f~en~eea~~~i~~mv~~~----~pD~viaGPaFnagrYG~acg~v~~aV~-e~~~IP~vta 117 (349)
T PF07355_consen 61 FNENKEEALKKILEMVKKL----KPDVVIAGPAFNAGRYGVACGEVAKAVQ-EKLGIPVVTA 117 (349)
T ss_pred hhhCHHHHHHHHHHHHHhc----CCCEEEEcCCcCCchHHHHHHHHHHHHH-HhhCCCEEEE
Confidence 3344444566666777777 99999998866432 11 33 7899999864
No 227
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.91 E-value=28 Score=33.56 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=38.8
Q ss_pred hccCcceEEeccCchhhHHhhhc----CCcEEecccccchhHHHHHHHHhhceEEEEe-ccCCCCCccCHHHHHHHHHHH
Q 036436 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT-RSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~~~~~~~l~~ai~~v 431 (485)
..+++ +|+=||=||++.+.+. ++|++.+-. | .+. -.+ ++.+++.++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~-----------------G-~lGFLt~-----~~~~~~~~~l~~l 121 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT-----------------G-HLGFLTE-----AYLNQLDEAIDQV 121 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC-----------------C-CCccccc-----CCHHHHHHHHHHH
Confidence 34566 9999999999999764 789888832 2 121 122 5678888888888
Q ss_pred hcCc
Q 036436 432 MDSE 435 (485)
Q Consensus 432 l~~~ 435 (485)
++++
T Consensus 122 ~~g~ 125 (305)
T PRK02649 122 LAGQ 125 (305)
T ss_pred HcCC
Confidence 8755
No 228
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=48.79 E-value=1.3e+02 Score=30.57 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=40.8
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEeccc-------------ccchhHHHHHHHHhhceEEEEeccCC-CCCccC
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWPL-------------YAEQKMIKAVVVEEMKVGLAVTRSEE-GDGLVS 420 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P~-------------~~DQ~~na~~v~~~~G~G~~l~~~~~-~~~~~~ 420 (485)
.+++++|.|-| .+.+|...++|+|++-= ..||....+-++ +....+....+ .+.+.-
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~t---k~~~~v~~~~~~~~~~~~ 140 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYV---RWSLDLPLPEADEPLAYL 140 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhcc---ceeeeCCCCCccccHHHH
Confidence 44588888855 67899999999999921 225554444443 33444433220 000002
Q ss_pred HHHHHHHHHHHhcC
Q 036436 421 SAELEQRVSELMDS 434 (485)
Q Consensus 421 ~~~l~~ai~~vl~~ 434 (485)
++.|.+++...+..
T Consensus 141 ~~~i~~A~~~a~~~ 154 (432)
T TIGR00173 141 RSTVDRAVAQAQGP 154 (432)
T ss_pred HHHHHHHHHHhhCC
Confidence 36677777777653
No 229
>PRK12342 hypothetical protein; Provisional
Probab=48.13 E-value=27 Score=32.71 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=28.7
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcc------hhHHHHhhhcCCceEEEecc
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCN------PAFQVSSSTLSIPTYYYFTT 144 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~------~~~~vA~~~lgIP~v~~~~~ 144 (485)
.+...+++. +||+|++...+. -+..+| +.||+|++++...
T Consensus 100 ~La~~i~~~----~~DLVl~G~~s~D~~tgqvg~~lA-~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKI----GFDLLLFGEGSGDLYAQQVGLLLG-ELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHh----CCCEEEEcCCcccCCCCCHHHHHH-HHhCCCcEeeEEE
Confidence 444555655 799999755433 266799 9999999987653
No 230
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=48.02 E-value=1.2e+02 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 1 MKDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 1 m~~~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
|++.|++.+. +..|-..=.+.|++.|.++| .+|.++
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G--~~Vg~f 37 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKG--VKVGFF 37 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEe
Confidence 6667777755 45888999999999999999 999998
No 231
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.87 E-value=36 Score=27.74 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=34.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
|+++.+.++..|..-..-++.-|+..| ++|.......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G--~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAG--FEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCC--CEEEECCCCCC
Confidence 689999999999999999999999999 99999965433
No 232
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.71 E-value=33 Score=32.96 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=39.8
Q ss_pred HhhhccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHH
Q 036436 354 EVLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVS 429 (485)
Q Consensus 354 ~lL~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~ 429 (485)
.+...+++ +|+=||=||++.+.+ .++|++.+-. | ..--..+ ++.+++.+++.
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~---------------G--~lGFL~~-----~~~~~~~~~l~ 119 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ---------------G--HLGFLTQ-----IPREYMTDKLL 119 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec---------------C--CCeEeec-----cCHHHHHHHHH
Confidence 33345677 999999999999964 4789988832 1 1111112 57788888888
Q ss_pred HHhcCc
Q 036436 430 ELMDSE 435 (485)
Q Consensus 430 ~vl~~~ 435 (485)
+++++.
T Consensus 120 ~i~~g~ 125 (296)
T PRK04539 120 PVLEGK 125 (296)
T ss_pred HHHcCC
Confidence 888654
No 233
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=47.61 E-value=31 Score=30.24 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=38.7
Q ss_pred ccCcceEEeccCchhhHHhhhcCCcEEeccccc-c----------------------hhHHHHHHHHhhceEEEEeccCC
Q 036436 358 HESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA-E----------------------QKMIKAVVVEEMKVGLAVTRSEE 414 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~-D----------------------Q~~na~~v~~~~G~G~~l~~~~~ 414 (485)
.+++ +|+.||...++.... ++|+|-+|..+ | ....+..+.+-+|+-+....-.
T Consensus 34 g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~- 109 (176)
T PF06506_consen 34 GADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYD- 109 (176)
T ss_dssp T-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEES-
T ss_pred CCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEEC-
Confidence 4555 999999999999977 99999999853 2 2223444444455544444432
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 036436 415 GDGLVSSAELEQRVSELMD 433 (485)
Q Consensus 415 ~~~~~~~~~l~~ai~~vl~ 433 (485)
+.+++...|.++..
T Consensus 110 -----~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 110 -----SEEEIEAAIKQAKA 123 (176)
T ss_dssp -----SHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHH
Confidence 56667777766654
No 234
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=47.44 E-value=31 Score=32.37 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=28.6
Q ss_pred hHHHHHHHhhccCCccEEEEcCCc------chhHHHHhhhcCCceEEEecc
Q 036436 100 NLHETLITISKRSNLKAFVIDFLC------NPAFQVSSSTLSIPTYYYFTT 144 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~------~~~~~vA~~~lgIP~v~~~~~ 144 (485)
.+...+++. +||+||+...+ .-+..+| +.||+|++++...
T Consensus 103 ~La~ai~~~----~~DLVl~G~~s~D~~tgqvg~~lA-e~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKA----GFDLILCGDGSSDLYAQQVGLLVG-EILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHh----CCCEEEEcCccccCCCCcHHHHHH-HHhCCCceeeEEE
Confidence 344555555 79999965433 2366699 9999999987663
No 235
>PRK08322 acetolactate synthase; Reviewed
Probab=47.02 E-value=1.1e+02 Score=32.38 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=40.8
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEeccc----c---------cchhHHHHHHHHhhceEEEEeccCCCCCccC
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWPL----Y---------AEQKMIKAVVVEEMKVGLAVTRSEEGDGLVS 420 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P~----~---------~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (485)
..++++.|.|-| .+.+|...++|+|++.= . .||....+-++ +....+...+ --
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~t---k~~~~v~~~~-----~~ 134 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLT---KWTRQIVSPD-----NI 134 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhhe---eEEEEeCCHH-----HH
Confidence 345589888854 78899999999999841 1 25655555543 3333333222 23
Q ss_pred HHHHHHHHHHHhcC
Q 036436 421 SAELEQRVSELMDS 434 (485)
Q Consensus 421 ~~~l~~ai~~vl~~ 434 (485)
++.|.+|+...++.
T Consensus 135 ~~~i~~A~~~A~~~ 148 (547)
T PRK08322 135 PEVVREAFRLAEEE 148 (547)
T ss_pred HHHHHHHHHHHccC
Confidence 45566666666554
No 236
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=46.85 E-value=25 Score=31.39 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCccEEEE-cCCc-chhHHHHhhhcCCceEEEecchhHh
Q 036436 112 SNLKAFVI-DFLC-NPAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 112 ~~pD~VI~-D~~~-~~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
..||+||. |+.. ..+..-| .++|||.|++.-+...+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea-~~l~IP~I~i~Dtn~~~ 163 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREA-SKLGIPVIAIVDTNCDP 163 (193)
T ss_pred cCCCEEEEeCCccchHHHHHH-HHcCCCEEEEecCCCCC
Confidence 57999984 4422 3466688 99999999998766433
No 237
>PRK05636 replicative DNA helicase; Provisional
Probab=46.84 E-value=7 Score=40.66 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=30.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..=.+.+|...+ +.| ..|.|++.+-.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSlEMs 305 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHN--KASVIFSLEMS 305 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEeeCC
Confidence 57778899999999999998876 568 88988876544
No 238
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.60 E-value=78 Score=31.90 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=35.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
..|+|+..+|.|-..=+..||..|..+| ..|.+++..+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~ 280 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHS 280 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCc
Confidence 3688999999999999999999999999 99999977654
No 239
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=46.51 E-value=99 Score=32.37 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=26.4
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
++++++.+. +||++|.+.. +..+| +++|||++.+
T Consensus 428 ~l~~~l~~~----~~DlliG~s~---~k~~a-~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTE----PVDFLIGNSY---GKYIQ-RDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhc----CCCEEEECch---HHHHH-HHcCCCEEEe
Confidence 445666665 9999998863 67789 9999999865
No 240
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=46.48 E-value=39 Score=33.40 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=53.5
Q ss_pred EEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCch-hhHhh-hcCCCeE-----------
Q 036436 279 VLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPE-GFLDR-TKDRGLV----------- 345 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~-~~~~~-~~~~n~~----------- 345 (485)
+++.+.||....-|. .++++.|++.+.+++|+......+ ...+|+ ++.-. +...++.
T Consensus 4 i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e--------~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (352)
T PRK12446 4 IVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIE--------KTIIEKENIPYYSISSGKLRRYFDLKNIKDP 73 (352)
T ss_pred EEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccc--------cccCcccCCcEEEEeccCcCCCchHHHHHHH
Confidence 677777776654444 456777777788998887443111 111221 11100 0000100
Q ss_pred ---eecccchHHhhhc--cCcceEEeccCchh---hHHhhhcCCcEEec
Q 036436 346 ---VESWAPQVEVLNH--ESVGGFVTHCGWNS---VLEGVCAGVPMLAW 386 (485)
Q Consensus 346 ---v~~~~p~~~lL~~--~~~~~~I~HgG~gs---~~eal~~GvP~v~~ 386 (485)
...+.--..++.. +++ +|++||+-| ...|...|+|.++.
T Consensus 74 ~~~~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 74 FLVMKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0011111223443 677 999999987 89999999999875
No 241
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=46.35 E-value=99 Score=32.86 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=22.4
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45589998866 5789999999999984
No 242
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=46.32 E-value=84 Score=31.83 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 103 ETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 103 ~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
+.+++. +||+||.... ...+| +++|||++.+
T Consensus 352 ~~~~~~----~pdliig~s~---~~~~a-~~lgip~~~~ 382 (415)
T cd01977 352 EILEML----KPDIILTGPR---VGELV-KKLHVPYVNI 382 (415)
T ss_pred HHHHhc----CCCEEEecCc---cchhh-hhcCCCEEec
Confidence 444555 9999998864 33578 9999999875
No 243
>PRK08506 replicative DNA helicase; Provisional
Probab=46.31 E-value=62 Score=33.44 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=32.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
+++...|+.|-..=.+.+|...++.| +.|.|++.+-..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g--~~V~~fSlEMs~ 232 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQD--KGVAFFSLEMPA 232 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcC--CcEEEEeCcCCH
Confidence 67778899999999999999998889 999999776443
No 244
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.08 E-value=32 Score=33.02 Aligned_cols=57 Identities=7% Similarity=0.141 Sum_probs=38.9
Q ss_pred hhhccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHH
Q 036436 355 VLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSE 430 (485)
Q Consensus 355 lL~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~ 430 (485)
+...+++ +|+=||=||++.++. +++|++.+-.-. +|. ..+ ++++++.+++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~------------lGF-----l~~-----~~~~~~~~~l~~ 115 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN------------LGF-----LTD-----LDPDNALQQLSD 115 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC------------CCc-----ccc-----cCHHHHHHHHHH
Confidence 3345666 999999999999974 378888774311 111 112 567888888888
Q ss_pred HhcCc
Q 036436 431 LMDSE 435 (485)
Q Consensus 431 vl~~~ 435 (485)
++++.
T Consensus 116 i~~g~ 120 (292)
T PRK03378 116 VLEGH 120 (292)
T ss_pred HHcCC
Confidence 88654
No 245
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=45.42 E-value=1.7e+02 Score=27.30 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=26.2
Q ss_pred chhHHHHHHHhhccCCccEEEEcCCcch------hHHHHhhhcCCceEEE
Q 036436 98 NPNLHETLITISKRSNLKAFVIDFLCNP------AFQVSSSTLSIPTYYY 141 (485)
Q Consensus 98 ~~~~~~ll~~~~~~~~pD~VI~D~~~~~------~~~vA~~~lgIP~v~~ 141 (485)
.+.+.+++++. +.|+||=-.+-++ +..+| +..|||++.|
T Consensus 55 ~e~l~~~l~e~----~i~llIDATHPyAa~iS~Na~~aa-ke~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLREE----GIDLLIDATHPYAARISQNAARAA-KETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHHc----CCCEEEECCChHHHHHHHHHHHHH-HHhCCcEEEE
Confidence 34666777776 9999883322222 33477 9999999976
No 246
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.97 E-value=32 Score=32.56 Aligned_cols=59 Identities=8% Similarity=0.178 Sum_probs=38.4
Q ss_pred chHHhhhccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHH
Q 036436 351 PQVEVLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQ 426 (485)
Q Consensus 351 p~~~lL~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (485)
++..+...+++ +|+=||=||++.+++ .++|++.+-.-. +|- ..+ ++++++.+
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G~--------------lGF---L~~-----~~~~~~~~ 90 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRGN--------------LGF---LTD-----IDPKNAYE 90 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCCC--------------Ccc---ccc-----CCHHHHHH
Confidence 33444445677 999999999998755 378988874211 111 112 56677777
Q ss_pred HHHHHhc
Q 036436 427 RVSELMD 433 (485)
Q Consensus 427 ai~~vl~ 433 (485)
.+.++++
T Consensus 91 ~l~~~~~ 97 (272)
T PRK02231 91 QLEACLE 97 (272)
T ss_pred HHHHHHh
Confidence 7777776
No 247
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=44.93 E-value=1.3e+02 Score=32.03 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=41.1
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEeccc-------------ccchhHHHHHHHHhhceEEEEeccCCCCCccC
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWPL-------------YAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVS 420 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P~-------------~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (485)
..+++++|.|-| .+.+|...++|+|++.= ..||....+.++ +....+...+ --
T Consensus 63 ~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~t---k~s~~v~~~~-----~i 134 (586)
T PRK06276 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPIT---KHNFQIKKPE-----EI 134 (586)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhc---ceEEecCCHH-----HH
Confidence 345589998754 78899999999999841 125665555553 3344443322 23
Q ss_pred HHHHHHHHHHHhcC
Q 036436 421 SAELEQRVSELMDS 434 (485)
Q Consensus 421 ~~~l~~ai~~vl~~ 434 (485)
++.|.+|++..++.
T Consensus 135 ~~~i~~A~~~A~~~ 148 (586)
T PRK06276 135 PEIFRAAFEIAKTG 148 (586)
T ss_pred HHHHHHHHHHhcCC
Confidence 44566666665544
No 248
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=44.82 E-value=77 Score=30.22 Aligned_cols=19 Identities=5% Similarity=0.016 Sum_probs=14.4
Q ss_pred hchhHHHHHHHhhccCCccEEEE
Q 036436 97 NNPNLHETLITISKRSNLKAFVI 119 (485)
Q Consensus 97 ~~~~~~~ll~~~~~~~~pD~VI~ 119 (485)
....+.++++++ +||+||+
T Consensus 109 ~~~~L~~iIr~~----~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREF----RPHVITT 127 (283)
T ss_pred HHHHHHHHHHHc----CCEEEEe
Confidence 445667777777 9999986
No 249
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=44.77 E-value=1.4e+02 Score=30.45 Aligned_cols=34 Identities=9% Similarity=0.218 Sum_probs=27.0
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
++.+++++. +||++|.+.. ...+| +++|||++.+
T Consensus 363 e~~~~l~~~----~~dliiG~s~---~~~~a-~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKEL----KIDVLIGNSY---GRRIA-EKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhc----CCCEEEECch---hHHHH-HHcCCCEEEe
Confidence 455666666 9999999974 56788 9999999865
No 250
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=44.56 E-value=31 Score=35.42 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=37.2
Q ss_pred hhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch
Q 036436 372 SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK 436 (485)
Q Consensus 372 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~ 436 (485)
++.||+++|.|+|..=-.+ =+--| ...-.|...++.+ -....+++++.++..|++
T Consensus 381 v~IEAMa~glPvvAt~~GG----P~EiV-~~~~tG~l~dp~~-----e~~~~~a~~~~kl~~~p~ 435 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGG----PAEIV-VHGVTGLLIDPGQ-----EAVAELADALLKLRRDPE 435 (495)
T ss_pred eeHHHHhcCCCEEEecCCC----ceEEE-EcCCcceeeCCch-----HHHHHHHHHHHHHhcCHH
Confidence 7899999999999983221 11112 2223555555533 345589999999999998
No 251
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=44.46 E-value=1.2e+02 Score=31.56 Aligned_cols=49 Identities=8% Similarity=-0.123 Sum_probs=37.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhc
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASV 57 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~ 57 (485)
-+++...|+.|-..=.+.++.+.+++| ..|.+++.+...+ ++...+.++
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs~~---~i~~~~~~l 313 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANK--ERAILFAYEESRA---QLLRNAYSW 313 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCHH---HHHHHHHHc
Confidence 367778899999999999999999999 9999997664433 344444444
No 252
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.45 E-value=84 Score=32.08 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=34.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
.|+++..++.|-..-...||..|.++| +.|.+++....+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R 135 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYR 135 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCC
Confidence 578888899999999999999999999 999999776543
No 253
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.36 E-value=36 Score=32.84 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=38.8
Q ss_pred hhccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHH
Q 036436 356 LNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 356 L~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~v 431 (485)
...+++ +|+=||=||++.+.+ .++|++.+.. |..--..+ +.++++.++++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~-----------------G~lGFL~~-----~~~~~~~~~l~~i 125 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNL-----------------GHVGFLAE-----AEAEDLDEAVERV 125 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec-----------------CCCceecc-----CCHHHHHHHHHHH
Confidence 345677 999999999999876 4889998854 11111112 5677788888888
Q ss_pred hcCc
Q 036436 432 MDSE 435 (485)
Q Consensus 432 l~~~ 435 (485)
+++.
T Consensus 126 ~~g~ 129 (306)
T PRK03372 126 VDRD 129 (306)
T ss_pred HcCC
Confidence 8655
No 254
>PRK08006 replicative DNA helicase; Provisional
Probab=44.27 E-value=20 Score=37.00 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..-.+.+|...+ +.| +.|.|++-+-.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~ 264 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMP 264 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCC
Confidence 56777899999999999999987 458 89999976644
No 255
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=44.16 E-value=1.6e+02 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
|.=++.|++|-+-=.+.|++.|+++| .+|.+++-...
T Consensus 33 VGNitvGGTGKTP~v~~La~~l~~~G--~~~~IlSRGYg 69 (311)
T TIGR00682 33 VGNLSVGGTGKTPVVVWLAELLKDRG--LRVGVLSRGYG 69 (311)
T ss_pred EeccccCCcChHHHHHHHHHHHHHCC--CEEEEECCCCC
Confidence 33456799999999999999999999 99999976544
No 256
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=44.02 E-value=1.1e+02 Score=31.16 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
|+++|+++..+++.| +|++.|++.| ++|..+
T Consensus 1 ~~~kVLvlG~G~re~-----al~~~l~~~g--~~v~~~ 31 (435)
T PRK06395 1 MTMKVMLVGSGGRED-----AIARAIKRSG--AILFSV 31 (435)
T ss_pred CceEEEEECCcHHHH-----HHHHHHHhCC--CeEEEE
Confidence 778999999998877 5888999999 877776
No 257
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=43.27 E-value=17 Score=37.17 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEcCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPF 44 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~-rG~~h~Vt~~~~~~~~ 44 (485)
+++...|+.|-..=.+.+|..++. .| ..|.|++.+...
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~ 236 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSA 236 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCH
Confidence 577788999999999999999875 58 899999876543
No 258
>PRK06904 replicative DNA helicase; Validated
Probab=43.14 E-value=17 Score=37.44 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~-rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..-.+.+|...+. .| +.|.|++.+-.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g--~~Vl~fSlEMs 261 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASE--KPVLVFSLEMP 261 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCC
Confidence 567778999999999999998874 58 99999977644
No 259
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=42.47 E-value=48 Score=32.23 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=25.7
Q ss_pred CCccEEE-EcCCc-chhHHHHhhhcCCceEEEecchhHh
Q 036436 112 SNLKAFV-IDFLC-NPAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 112 ~~pD~VI-~D~~~-~~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
..||+|| .|... ..+..=| .++|||.|.+.-+.+-+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA-~kl~IPvIaivDTn~dp 188 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEA-QRLGIPVAAIVDTNCDP 188 (326)
T ss_pred cCCCEEEEeCCccchHHHHHH-HHcCCCEEEEeeCCCCc
Confidence 3699888 45433 3466688 99999999987655433
No 260
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=42.47 E-value=1.2e+02 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=25.6
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
++.+.+++. +||++|.+.. ...+| +++|||++..
T Consensus 347 e~~~~i~~~----~pDl~ig~s~---~~~~a-~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK----KADLLVAGGK---ERYLA-LKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc----CCCEEEECCc---chhhH-HhcCCCEEEc
Confidence 444666666 9999999853 45678 9999999843
No 261
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.33 E-value=36 Score=28.59 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEc
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~ 39 (485)
++||++.+.+..||=.-..-+++.|+..| ++|....
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~G--feVi~~g 47 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAG--FEVINLG 47 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCC--ceEEecC
Confidence 46999999999999999999999999999 9998863
No 262
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.30 E-value=51 Score=29.56 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=33.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
.++++.+.++-.|-....-++..|.+.| ++|++....
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G--~~vi~lG~~ 119 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANG--FEVIDLGRD 119 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCC--CEEEECCCC
Confidence 4899999999999999999999999999 999988544
No 263
>PRK09165 replicative DNA helicase; Provisional
Probab=42.27 E-value=76 Score=33.05 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=30.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCCeEEEEEcCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTY---------------HPCFSIDIIIPTAPF 44 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~r---------------G~~h~Vt~~~~~~~~ 44 (485)
+++..-|+.|-..=.+.+|...+.+ | ..|.|++.+-..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g--~~vl~fSlEMs~ 272 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNG--GVVGFFSLEMSA 272 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCC--CeEEEEeCcCCH
Confidence 6777889999999999999888753 7 889999766443
No 264
>PRK10867 signal recognition particle protein; Provisional
Probab=42.19 E-value=1.1e+02 Score=31.18 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEcCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAPF 44 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~r-G~~h~Vt~~~~~~~~ 44 (485)
-|+++..++.|-..-...||..|+++ | ..|.+++...++
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R 141 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYR 141 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccc
Confidence 57788889999999999999999999 9 999999876554
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=41.79 E-value=43 Score=29.18 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=32.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+++...|+.|-..=.+.++.+.++.| ..|.+++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCC
Confidence 57788899999999999999999999 99999977544
No 266
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=41.67 E-value=1.9e+02 Score=30.93 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.7
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345599998855 6788999999999995
No 267
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=41.58 E-value=51 Score=34.76 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=50.6
Q ss_pred cchHHhhhccCcceEEecc-Cch-hhHHhhhcCCcEEeccccc-chhHHH---HHHHHhhceEEEEeccCCCCCccCHHH
Q 036436 350 APQVEVLNHESVGGFVTHC-GWN-SVLEGVCAGVPMLAWPLYA-EQKMIK---AVVVEEMKVGLAVTRSEEGDGLVSSAE 423 (485)
Q Consensus 350 ~p~~~lL~~~~~~~~I~Hg-G~g-s~~eal~~GvP~v~~P~~~-DQ~~na---~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (485)
+++.+++..++++.|-+-= =|| |=+||+++|||.|..=..+ -+..+- ... ..|+-+.-++.. +.++
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~--~~GV~VvdR~~~------n~~e 532 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPE--EYGVYVVDRRDK------NYDE 532 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHG--GGTEEEE-SSSS-------HHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCc--CCcEEEEeCCCC------CHHH
Confidence 4678888889995555421 133 7899999999999987743 222211 222 236665555443 5555
Q ss_pred HHHHH----HHHhc-Cc-hHHHHHHHHHHHHHHH
Q 036436 424 LEQRV----SELMD-SE-KGRAVKERAVAMKEAA 451 (485)
Q Consensus 424 l~~ai----~~vl~-~~-~~~~~~~~a~~l~~~~ 451 (485)
..+.| .+... +. +....|++|.++++.+
T Consensus 533 ~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 533 SVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 44444 44443 22 2456788888877654
No 268
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.49 E-value=1.9e+02 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=25.8
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 3 DTIVLYT-SPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 3 ~~il~~~-~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
++|+++. .|..|. .||+.|+++| |+|+++..
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G--~~V~~~d~ 130 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSG--YQVRILEQ 130 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCC--CeEEEeCC
Confidence 5788887 787774 6899999999 99999853
No 269
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=41.41 E-value=1.4e+02 Score=23.71 Aligned_cols=84 Identities=8% Similarity=0.144 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHHHHHHH
Q 036436 15 HLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPALVYELG 94 (485)
Q Consensus 15 Hv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (485)
+=.-++.+|+.|.+.| +++ ++|..+. ..+.. .|+....+-.. +++
T Consensus 10 ~K~~~~~~a~~l~~~G--~~i-~AT~gTa--------~~L~~-----~Gi~~~~v~~~----~~~--------------- 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDG--FPL-FATGGTS--------RVLAD-----AGIPVRAVSKR----HED--------------- 54 (112)
T ss_pred cHHHHHHHHHHHHHCC--CEE-EECcHHH--------HHHHH-----cCCceEEEEec----CCC---------------
Confidence 3456789999999999 887 3543322 12222 25555444321 110
Q ss_pred HhhchhHHHHHHH-hhccCCccEEEEcC--Cc-------ch-hHHHHhhhcCCceEE
Q 036436 95 ELNNPNLHETLIT-ISKRSNLKAFVIDF--LC-------NP-AFQVSSSTLSIPTYY 140 (485)
Q Consensus 95 ~~~~~~~~~ll~~-~~~~~~pD~VI~D~--~~-------~~-~~~vA~~~lgIP~v~ 140 (485)
..+.+.+++++ - ++|+||.-. .. .. ....| -..+||+++
T Consensus 55 --g~~~i~~~i~~~g----~idlVIn~~~~~~~~~~~~dg~~iRR~A-~~~~Ip~~T 104 (112)
T cd00532 55 --GEPTVDAAIAEKG----KFDVVINLRDPRRDRCTDEDGTALLRLA-RLYKIPVTT 104 (112)
T ss_pred --CCcHHHHHHhCCC----CEEEEEEcCCCCcccccCCChHHHHHHH-HHcCCCEEE
Confidence 12344555555 4 999999732 21 11 22267 889999986
No 270
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=41.40 E-value=95 Score=27.30 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=25.3
Q ss_pred hHHhhhccCcceEEeccCchhhHHhhh---------cCCcEEecc
Q 036436 352 QVEVLNHESVGGFVTHCGWNSVLEGVC---------AGVPMLAWP 387 (485)
Q Consensus 352 ~~~lL~~~~~~~~I~HgG~gs~~eal~---------~GvP~v~~P 387 (485)
-..+|-..+-.+++--||.||+-|.+. +.+|++++-
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 344555544456777899999988743 599999975
No 271
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.49 E-value=45 Score=31.55 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=37.7
Q ss_pred ccCcceEEeccCchhhHHhhh-cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc
Q 036436 358 HESVGGFVTHCGWNSVLEGVC-AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE 435 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~eal~-~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~ 435 (485)
.+++ +|+=||-||++.++. +.+|++.+-. |..--..+ ++.+++.+++++++++.
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~-----------------G~lGFL~~-----~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM-----------------GGLGFLTE-----IEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC-----------------CCCccCcc-----cCHHHHHHHHHHHHcCC
Confidence 4566 999999999999988 4567776622 11111123 67888888898888765
No 272
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=40.31 E-value=18 Score=32.10 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=24.9
Q ss_pred cEEEEEcCCCccCHHH------------HHHHHHHHHhCCCCeEEEEEcCC
Q 036436 3 DTIVLYTSPGRGHLNS------------MVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P------------~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
+||++.+.|+.=.+.| -..||+++..+| ++|++++..
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G--a~V~li~g~ 52 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG--AEVTLIHGP 52 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT---EEEEEE-T
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC--CEEEEEecC
Confidence 4666666665555544 368999999999 999999754
No 273
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=40.21 E-value=1.4e+02 Score=26.00 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=62.9
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.+-.|++|.+. +.+++-++..|.+++..-+.. .. . ..+.. . ...+.+..++|
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~---------~~-~---~~~~~------~-~~~~~~l~ell 89 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP---------KP-E---EGADE------F-GVEYVSLDELL 89 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC---------HH-H---HHHHH------T-TEEESSHHHHH
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC---------Ch-h---hhccc------c-cceeeehhhhc
Confidence 448888999887 678888888898876655432 00 0 00110 1 11567889999
Q ss_pred hccCcceEEeccCchhhHHhhhcCCcEEecccccchhHHHHHHHHhhceE-EEEeccCCCCCccCHHHHHHHHHH
Q 036436 357 NHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG-LAVTRSEEGDGLVSSAELEQRVSE 430 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~l~~ai~~ 430 (485)
+.+++ ++.|+-.+. ......|+..+ +.++=| +.++..+ .+.+..++|.+++++
T Consensus 90 ~~aDi--v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~aR--G~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 90 AQADI--VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVAR--GELVDEDALLDALES 143 (178)
T ss_dssp HH-SE--EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESSS--GGGB-HHHHHHHHHT
T ss_pred chhhh--hhhhhcccc----------------ccceeeeeeee-eccccceEEEeccc--hhhhhhhHHHHHHhh
Confidence 99999 887765432 13456677777 366655 4445544 455777777777653
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=40.03 E-value=2.2e+02 Score=28.41 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
+++..-|+.|-..=++.++..+++.| ..|.+++.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~EE 120 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGEE 120 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCc
Confidence 56677799999999999999999998 8999987653
No 275
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=39.96 E-value=2.1e+02 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=23.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
||+|+..+..+ +...++|.++| |+|..+.+.+.
T Consensus 2 kIvf~Gs~~~a-----~~~L~~L~~~~--~~i~~Vvt~pd 34 (313)
T TIGR00460 2 RIVFFGTPTFS-----LPVLEELREDN--FEVVGVVTQPD 34 (313)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCC--CcEEEEEcCCC
Confidence 68888666543 56668888899 99987765443
No 276
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=39.94 E-value=57 Score=29.20 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=35.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
.+|++.|.++-.|-....-++..|.++| .+|+++....+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G--~~vi~LG~~vp 123 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANG--FDVIDLGRDVP 123 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCC--cEEEECCCCCC
Confidence 4899999999999999999999999999 99999966544
No 277
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=39.80 E-value=3.4e+02 Score=25.87 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=43.4
Q ss_pred cEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhh
Q 036436 278 SVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (485)
Q Consensus 278 ~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~ 357 (485)
.++.+++|.+. +.++..+...|.++++.-+.. +.. .+....+.....+.+..+++.
T Consensus 153 ~v~IiG~G~iG-------~avA~~L~~~G~~V~v~~R~~----------------~~~-~~~~~~g~~~~~~~~l~~~l~ 208 (287)
T TIGR02853 153 NVMVLGFGRTG-------MTIARTFSALGARVFVGARSS----------------ADL-ARITEMGLIPFPLNKLEEKVA 208 (287)
T ss_pred EEEEEcChHHH-------HHHHHHHHHCCCEEEEEeCCH----------------HHH-HHHHHCCCeeecHHHHHHHhc
Confidence 38888888876 667888888887654443221 110 000111222334445567788
Q ss_pred ccCcceEEeccCchhhHHh
Q 036436 358 HESVGGFVTHCGWNSVLEG 376 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~ea 376 (485)
.+++ +|+|...+.+.+.
T Consensus 209 ~aDi--Vint~P~~ii~~~ 225 (287)
T TIGR02853 209 EIDI--VINTIPALVLTAD 225 (287)
T ss_pred cCCE--EEECCChHHhCHH
Confidence 8898 9999987654443
No 278
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=39.75 E-value=45 Score=33.43 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHhhchhHHHHHHHhhccCCccEEEEcCCcchh------HH----HHhhhcCCceEEEe
Q 036436 93 LGELNNPNLHETLITISKRSNLKAFVIDFLCNPA------FQ----VSSSTLSIPTYYYF 142 (485)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~------~~----vA~~~lgIP~v~~~ 142 (485)
..+.....+.++++++ +||++|+.+.+.++ .. +. +++|||.++-.
T Consensus 60 n~eea~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~-e~~~IP~vt~M 114 (431)
T TIGR01918 60 NLEEAVARVLEMLKDK----EPDIFIAGPAFNAGRYGVACGEICKVVQ-DKLNVPAVTSM 114 (431)
T ss_pred CHHHHHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHH-HhhCCCeEEEe
Confidence 3444555666666666 99999998866432 11 33 68999999754
No 279
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=39.67 E-value=51 Score=26.82 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=24.5
Q ss_pred EEEEEcCCCcc---CHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRG---HLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~G---Hv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
||+|+--|-.+ .-.-..+|+.+.++|| |+|.++...
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RG--hev~~~~~~ 40 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRG--HEVFYYEPG 40 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT---EEEEE-GG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCC--CEEEEEEcC
Confidence 46776666554 2345788999999999 999999655
No 280
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=39.64 E-value=1.2e+02 Score=29.63 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=29.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 6 VLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 6 l~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
.=++.|+.|-+--.+.||++|++|| ..|-+++-.
T Consensus 53 GNltvGGtGKTP~vi~la~~l~~rG--~~~gvvSRG 86 (336)
T COG1663 53 GNLTVGGTGKTPVVIWLAEALQARG--VRVGVVSRG 86 (336)
T ss_pred ccEEECCCCcCHHHHHHHHHHHhcC--CeeEEEecC
Confidence 3467799999999999999999999 999998644
No 281
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=39.64 E-value=45 Score=33.44 Aligned_cols=46 Identities=20% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHHHhhchhHHHHHHHhhccCCccEEEEcCCcchh------HH----HHhhhcCCceEEEe
Q 036436 92 ELGELNNPNLHETLITISKRSNLKAFVIDFLCNPA------FQ----VSSSTLSIPTYYYF 142 (485)
Q Consensus 92 ~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~~------~~----vA~~~lgIP~v~~~ 142 (485)
+..+.....+.++++++ +||++|+.+.+.++ .. +. +++|||.++-.
T Consensus 59 en~eea~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~-e~~~IP~vtaM 114 (431)
T TIGR01917 59 ENLEEAKAKVLEMIKGA----NPDIFIAGPAFNAGRYGMAAGAITKAVQ-DELGIKAFTAM 114 (431)
T ss_pred hCHHHHHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHH-HhhCCCeEEEe
Confidence 33444556666666666 99999998866432 11 33 68999999754
No 282
>PLN02929 NADH kinase
Probab=39.02 E-value=36 Score=32.71 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=42.5
Q ss_pred hccCcceEEeccCchhhHHhhh---cCCcEEeccccc------chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHH
Q 036436 357 NHESVGGFVTHCGWNSVLEGVC---AGVPMLAWPLYA------EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQR 427 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (485)
..+++ +|+-||-||++.+.+ .++|++.+-.-. .++++.-.. ..-.|-.. . .+.+++.++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~---~-----~~~~~~~~~ 130 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC---A-----ATAEDFEQV 130 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc---c-----CCHHHHHHH
Confidence 34566 999999999999854 478998885531 122222111 10122211 2 578899999
Q ss_pred HHHHhcCc
Q 036436 428 VSELMDSE 435 (485)
Q Consensus 428 i~~vl~~~ 435 (485)
|.+++++.
T Consensus 131 L~~il~g~ 138 (301)
T PLN02929 131 LDDVLFGR 138 (301)
T ss_pred HHHHHcCC
Confidence 99999765
No 283
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=38.64 E-value=1.4e+02 Score=31.78 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.8
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 34488888854 6789999999999995
No 284
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=38.63 E-value=1.3e+02 Score=26.31 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=54.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeE--EEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFS--IDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTL 80 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 80 (485)
+||+|+..++. .-+..+..+|.+++ +. +..+.+....... ..... ..++....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~--~~~~iv~Vit~~~~~~~---~~~~~-----~~~~~~~~~~~~------~- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARG--HNVEIVLVITNPDKPRG---RSRAI-----KNGIPAQVADEK------N- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTS--SEEEEEEEEESSTTTHH---HHHHH-----HTTHHEEEHHGG------G-
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCC--CCceEEEEecccccccc---ccccc-----cCCCCEEecccc------C-
Confidence 36888866655 55777788999999 76 6666554442210 00000 112222222211 0
Q ss_pred CCCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcCCcc-hhHHHHhhhcCCceEEEecc
Q 036436 81 RSPADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDFLCN-PAFQVSSSTLSIPTYYYFTT 144 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~-~~~~vA~~~lgIP~v~~~~~ 144 (485)
.. ......+++.+.++++ +||++|+-.+.. ....+- +.....++-++++
T Consensus 61 ---~~-------~~~~~~~~~~~~l~~~----~~Dl~v~~~~~~il~~~~l-~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 ---FQ-------PRSENDEELLELLESL----NPDLIVVAGYGRILPKEFL-SIPPYGIINIHPS 110 (181)
T ss_dssp ---SS-------SHHHHHHHHHHHHHHT----T-SEEEESS-SS---HHHH-HHSTTSEEEEESS
T ss_pred ---CC-------chHhhhhHHHHHHHhh----ccceeehhhhHHHhhhhhh-hcccccEEEEeec
Confidence 00 0011234566777777 999998876443 233455 6666777776653
No 285
>PRK04940 hypothetical protein; Provisional
Probab=38.57 E-value=63 Score=28.44 Aligned_cols=31 Identities=10% Similarity=-0.179 Sum_probs=24.6
Q ss_pred CccEEEEcCCc-chhHHHHhhhcCCceEEEecc
Q 036436 113 NLKAFVIDFLC-NPAFQVSSSTLSIPTYYYFTT 144 (485)
Q Consensus 113 ~pD~VI~D~~~-~~~~~vA~~~lgIP~v~~~~~ 144 (485)
+++++|...+. +|+..+| +++|+|.|.+.++
T Consensus 60 ~~~~liGSSLGGyyA~~La-~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIG-FLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHH-HHHCCCEEEECCC
Confidence 46788876644 5788899 9999999998763
No 286
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=38.54 E-value=29 Score=34.56 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
|+++|+++-.+..| +.+|+.|++++++.+||+++.+.
T Consensus 1 m~~~vvIiG~G~AG-----~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 1 MSNGIVIIGSGFAA-----RQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCCCEEEECCcHHH-----HHHHHHHHhhCcCCCEEEEeCCC
Confidence 77899999887776 78899999988888999997554
No 287
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.52 E-value=2.6e+02 Score=24.20 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=48.0
Q ss_pred eEEEcCchhhHHHHHHHHHhcccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHH
Q 036436 214 GIIVNTFELLQERAIKAMLEGQCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSK 293 (485)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~ 293 (485)
..++-+.++.-......+...+ |++..+|-....... ...+.+.+.+....++ +|+|++|+=-
T Consensus 51 ifllG~~~~~~~~~~~~l~~~y-------P~l~ivg~~~g~f~~----~~~~~i~~~I~~~~pd-iv~vglG~Pk----- 113 (172)
T PF03808_consen 51 IFLLGGSEEVLEKAAANLRRRY-------PGLRIVGYHHGYFDE----EEEEAIINRINASGPD-IVFVGLGAPK----- 113 (172)
T ss_pred EEEEeCCHHHHHHHHHHHHHHC-------CCeEEEEecCCCCCh----hhHHHHHHHHHHcCCC-EEEEECCCCH-----
Confidence 3444555555555566667665 888888733322221 3556677777654333 9999998643
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCC
Q 036436 294 QLKEMAIGLERSGVKFLWVVRAP 316 (485)
Q Consensus 294 ~~~~i~~al~~~~~~~i~~~~~~ 316 (485)
+-.-+.+-...++..++..+++.
T Consensus 114 QE~~~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 114 QERWIARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHHHHHHHHHCCCCEEEEECch
Confidence 11223333345666655555553
No 288
>PRK05858 hypothetical protein; Provisional
Probab=38.50 E-value=1.8e+02 Score=30.58 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.4
Q ss_pred ceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 362 ~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
++++.|.|-| .+.+|...++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 4488887754 7889999999999985
No 289
>PRK10637 cysG siroheme synthase; Provisional
Probab=38.47 E-value=4.1e+02 Score=27.33 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=75.4
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.+++|+.|.+.. ++ ++.|...+..+.++.+. +.+.+.+-....++.+..---+...+
T Consensus 13 ~~vlvvGgG~vA~------rk-~~~ll~~ga~v~visp~---------------~~~~~~~l~~~~~i~~~~~~~~~~dl 70 (457)
T PRK10637 13 RDCLLVGGGDVAE------RK-ARLLLDAGARLTVNALA---------------FIPQFTAWADAGMLTLVEGPFDESLL 70 (457)
T ss_pred CEEEEECCCHHHH------HH-HHHHHHCCCEEEEEcCC---------------CCHHHHHHHhCCCEEEEeCCCChHHh
Confidence 4488888887751 22 34455567777665432 22233222222344333221234445
Q ss_pred hccCcceEEeccCchhhHHhhh-----cCCcEEecccccchhHHH-----HHHHHhhceEEEEeccCCCCCccCHHHHHH
Q 036436 357 NHESVGGFVTHCGWNSVLEGVC-----AGVPMLAWPLYAEQKMIK-----AVVVEEMKVGLAVTRSEEGDGLVSSAELEQ 426 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~-----~GvP~v~~P~~~DQ~~na-----~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (485)
..+.+ +|.--+--.+.+.++ .|+++-++ |++..+ ..+ ++=++-+.+.+.. .++ .-...|++
T Consensus 71 ~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~~----d~~~~~~f~~pa~~-~~g~l~iaisT~G-~sP-~~a~~lr~ 141 (457)
T PRK10637 71 DTCWL--AIAATDDDAVNQRVSEAAEARRIFCNVV----DAPKAASFIMPSII-DRSPLMVAVSSGG-TSP-VLARLLRE 141 (457)
T ss_pred CCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEEC----CCcccCeEEEeeEE-ecCCEEEEEECCC-CCc-HHHHHHHH
Confidence 66666 777766655555443 45555443 333222 222 2213444444433 012 23366888
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 036436 427 RVSELMDSEKGRAVKERAVAMKEAAAAA 454 (485)
Q Consensus 427 ai~~vl~~~~~~~~~~~a~~l~~~~~~~ 454 (485)
.|++++. ++.+.+-+.+.++++.+++.
T Consensus 142 ~ie~~~~-~~~~~~~~~~~~~R~~~k~~ 168 (457)
T PRK10637 142 KLESLLP-QHLGQVAKYAGQLRGRVKQQ 168 (457)
T ss_pred HHHHhcc-hhHHHHHHHHHHHHHHHHHh
Confidence 8888883 33455667777777777654
No 290
>PRK06270 homoserine dehydrogenase; Provisional
Probab=38.44 E-value=3.3e+02 Score=26.71 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=35.7
Q ss_pred chHHhhhccCcceEEe------ccC---chhhHHhhhcCCcEEe---cccccchhHHHHHHHHhhceEEEEe
Q 036436 351 PQVEVLNHESVGGFVT------HCG---WNSVLEGVCAGVPMLA---WPLYAEQKMIKAVVVEEMKVGLAVT 410 (485)
Q Consensus 351 p~~~lL~~~~~~~~I~------HgG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (485)
+..++|..++...+|- |+| ..-+.++|.+|+++|+ -|+...-....... ++-|+.....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEe
Confidence 5567776555444665 443 4566899999999999 47654333333333 3446666543
No 291
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.37 E-value=56 Score=30.80 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=36.6
Q ss_pred ccCcceEEeccCchhhHHhhhc-----CCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 358 HESVGGFVTHCGWNSVLEGVCA-----GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
.+++ +|+=||=||++.++.. .+|++.+-.. |..--..+ ++.+++.+++.+++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~----------------G~lGFL~~-----~~~~~~~~~l~~i~ 95 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTK----------------DQLGFYCD-----FHIDDLDKMIQAIT 95 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecC----------------CCCeEccc-----CCHHHHHHHHHHHH
Confidence 3566 9999999999999874 5676666330 11111122 57788888888887
Q ss_pred cCc
Q 036436 433 DSE 435 (485)
Q Consensus 433 ~~~ 435 (485)
+++
T Consensus 96 ~g~ 98 (264)
T PRK03501 96 KEE 98 (264)
T ss_pred cCC
Confidence 654
No 292
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=38.28 E-value=52 Score=33.92 Aligned_cols=55 Identities=13% Similarity=0.282 Sum_probs=38.6
Q ss_pred hccCcceEEeccCchhhHHhhhc----CCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
..+++ +|+=||=||++.+... ++|++.+-. -. +|- | .+ ++.+++.++|.+++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~------------G~--LGF-L--t~-----i~~~e~~~~Le~il 316 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSM------------GS--LGF-M--TP-----FHSEQYRDCLDAIL 316 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC------------CC--cce-e--cc-----cCHHHHHHHHHHHH
Confidence 35666 9999999999999774 568776621 01 222 2 22 67888999999988
Q ss_pred cCc
Q 036436 433 DSE 435 (485)
Q Consensus 433 ~~~ 435 (485)
+++
T Consensus 317 ~G~ 319 (508)
T PLN02935 317 KGP 319 (508)
T ss_pred cCC
Confidence 765
No 293
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=37.64 E-value=59 Score=29.13 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=28.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
|||+.-=.+. +---+.+|+++|.+.| |+|+++.|...
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g--~~V~VvAP~~~ 38 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALG--HDVVVVAPDSE 38 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTS--SEEEEEEESSS
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcC--CeEEEEeCCCC
Confidence 5777777666 6677899999999999 99999966533
No 294
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.55 E-value=58 Score=30.56 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=37.0
Q ss_pred ccCcceEEeccCchhhHHhhh-cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCc
Q 036436 358 HESVGGFVTHCGWNSVLEGVC-AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSE 435 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~eal~-~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~ 435 (485)
.+++ +|+=||-||++.+++ +++|++.+-... +|- ..+ ++.+++.+++++++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G~--------------lGf---l~~-----~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAGR--------------LGF---LSS-----YTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCCC--------------Ccc---ccc-----cCHHHHHHHHHHHHcCC
Confidence 4466 999999999999987 578877773211 111 112 56778888888877654
No 295
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=37.23 E-value=2e+02 Score=29.29 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=34.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
-|+++..++.|-..=...||..|+++| +.|.+++..+++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccc
Confidence 577888899999999999999999999 999999876554
No 296
>PRK11269 glyoxylate carboligase; Provisional
Probab=37.22 E-value=2.2e+02 Score=30.42 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=21.9
Q ss_pred cceEEeccC------chhhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCG------WNSVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG------~gs~~eal~~GvP~v~~P 387 (485)
.++++.|.| .+.+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 554777766 678999999999999984
No 297
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=37.15 E-value=27 Score=31.69 Aligned_cols=114 Identities=12% Similarity=0.018 Sum_probs=60.2
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHHHH
Q 036436 12 GRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPALVY 91 (485)
Q Consensus 12 ~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (485)
+..|+...+.++..++.|| =.+.|+++... ++..++...-...++....-.-. + +-... ..+.
T Consensus 90 T~~~Lr~A~~fVa~vA~r~--GiILFv~tn~~------~~~~ve~aA~r~~gy~~~~~w~~-G-~lTN~-------~~l~ 152 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRG--GIILFVGTNNG------FKDLVERAARRAGGYSHNRKWLG-G-LLTNA-------RELF 152 (251)
T ss_pred HHHHHHHHHHHHHHHHhcC--CeEEEEecCcc------hHHHHHHHHHHhcCceeeeeecc-c-eeecc-------hhhc
Confidence 4567888899999999999 88999865433 33334443223334443322211 0 11110 0011
Q ss_pred HHH-H--hhchhHHHHHHHhhccCCccEEEE-cCCc-chhHHHHhhhcCCceEEEecchhH
Q 036436 92 ELG-E--LNNPNLHETLITISKRSNLKAFVI-DFLC-NPAFQVSSSTLSIPTYYYFTTAGS 147 (485)
Q Consensus 92 ~~~-~--~~~~~~~~ll~~~~~~~~pD~VI~-D~~~-~~~~~vA~~~lgIP~v~~~~~~~~ 147 (485)
..+ + ...+....++.. ..+||||. |... ..++.=| .+++||.|.+.-..+.
T Consensus 153 g~~~~~~~~~pd~~~f~~t----~~~D~vvvln~~e~~sAilEA-~K~~IPTIgIVDtN~~ 208 (251)
T KOG0832|consen 153 GALVRKFLSLPDALCFLPT----LTPDLVVVLNPEENHSAILEA-AKMAIPTIGIVDTNCN 208 (251)
T ss_pred ccccccccCCCcceeeccc----CCcceeEecCcccccHHHHHH-HHhCCCeEEEecCCCC
Confidence 110 0 011222222222 36788884 4444 3466778 9999999998665543
No 298
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=37.04 E-value=2.3e+02 Score=29.06 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=28.8
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 3 DTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 3 ~~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
+++++... .+-|-..=...|++.|+++| ++|..+-+
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G--~~V~~fK~ 40 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRG--LRVQPFKV 40 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCC--CCcceeec
Confidence 45666644 55788999999999999999 99988844
No 299
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=36.74 E-value=2e+02 Score=22.63 Aligned_cols=84 Identities=10% Similarity=0.189 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHHHHHH
Q 036436 14 GHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPALVYEL 93 (485)
Q Consensus 14 GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (485)
.+-.-++.+++.|.+.| +++ ++|..+. ..+.. .|+.+..+... ..
T Consensus 10 ~~k~~~~~~~~~l~~~G--~~l-~aT~gT~--------~~l~~-----~gi~~~~v~~~----~~--------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELG--FKL-VATEGTA--------KYLQE-----AGIPVEVVNKV----SE--------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHHCC--CEE-EEchHHH--------HHHHH-----cCCeEEEEeec----CC---------------
Confidence 35567889999999999 877 3443322 12222 25655444321 10
Q ss_pred HHhhchhHHHHHHHhhccCCccEEEEcCCc-------chhHHHHhhhcCCceEE
Q 036436 94 GELNNPNLHETLITISKRSNLKAFVIDFLC-------NPAFQVSSSTLSIPTYY 140 (485)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~-------~~~~~vA~~~lgIP~v~ 140 (485)
..+.+.+.+++- ++|+||.-... +.....| -.+|||+++
T Consensus 55 ---~~~~i~~~i~~~----~id~vIn~~~~~~~~~~~~~iRR~A-v~~~ipl~T 100 (110)
T cd01424 55 ---GRPNIVDLIKNG----EIQLVINTPSGKRAIRDGFSIRRAA-LEYKVPYFT 100 (110)
T ss_pred ---CchhHHHHHHcC----CeEEEEECCCCCccCccHHHHHHHH-HHhCCCEEe
Confidence 123455555555 99999984321 2334477 889999984
No 300
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=36.35 E-value=3.1e+02 Score=27.05 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=60.3
Q ss_pred HHHHHHHhCC--CeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEe------cc
Q 036436 297 EMAIGLERSG--VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVT------HC 368 (485)
Q Consensus 297 ~i~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~------Hg 368 (485)
..+.++...+ .+++.++..+. . -...+.+++. +..|-...+++...++.+++. +-
T Consensus 16 ~h~~al~~~~~~~eLvaV~d~~~--------e----rA~~~A~~~g-----i~~y~~~eell~d~Di~~V~ipt~~P~~~ 78 (343)
T TIGR01761 16 FYLAAFAAAPERFELAGILAQGS--------E----RSRALAHRLG-----VPLYCEVEELPDDIDIACVVVRSAIVGGQ 78 (343)
T ss_pred HHHHHHHhCCCCcEEEEEEcCCH--------H----HHHHHHHHhC-----CCccCCHHHHhcCCCEEEEEeCCCCCCcc
Confidence 3566666654 67777765431 0 1123444432 225777888888888877875 23
Q ss_pred CchhhHHhhhcCCcEEe-cccccchhHHHHHHHHhhceEEEEec
Q 036436 369 GWNSVLEGVCAGVPMLA-WPLYAEQKMIKAVVVEEMKVGLAVTR 411 (485)
Q Consensus 369 G~gs~~eal~~GvP~v~-~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (485)
+.--+.++|.+|+.++| -|+..++-.-...++++.|+=+.+..
T Consensus 79 H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~ 122 (343)
T TIGR01761 79 GSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNT 122 (343)
T ss_pred HHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 45678899999999988 57765555555555555455555433
No 301
>PRK07773 replicative DNA helicase; Validated
Probab=36.28 E-value=69 Score=36.12 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=30.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~r-G~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..=.+.+|...+.+ | ..|.|++-+-.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~--~~V~~fSlEms 257 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHR--LAVAIFSLEMS 257 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 6777889999999999999998754 7 88999976544
No 302
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.06 E-value=2e+02 Score=24.84 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=59.9
Q ss_pred hccCcceEEeccC---chhhHHhhhcCCcEEecc-cccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 357 NHESVGGFVTHCG---WNSVLEGVCAGVPMLAWP-LYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 357 ~~~~~~~~I~HgG---~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
+||++++-+--.| .-|+.|--.+|.=.+-== +..=+..|+++. +++|.=-.+.-+. .+.++|.++..+-|
T Consensus 71 aHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVkg-----~~k~~Il~a~~~Rl 144 (176)
T COG3195 71 AHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVKG-----NTKDTILAAFERRL 144 (176)
T ss_pred hChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeecC-----CCHHHHHHHHHHHh
Confidence 4677632222222 347777777776543211 111266899999 5889887776666 78999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHH
Q 036436 433 DSEKGRAVKERAVAMKEAAA 452 (485)
Q Consensus 433 ~~~~~~~~~~~a~~l~~~~~ 452 (485)
.|++..+++..+.++.+...
T Consensus 145 ~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 145 DNDREQEFATALAEIERIAL 164 (176)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 98876677777777666543
No 303
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=35.97 E-value=3.7e+02 Score=25.16 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=23.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
|||+.-=-+. |---+.+|+++|++ + |+|+++.|..
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~-~--~~V~VvAP~~ 36 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK-Y--HEVIIVAPEN 36 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh-C--CcEEEEccCC
Confidence 5666654444 44458899999975 7 7999995543
No 304
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=35.72 E-value=1.4e+02 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHhhhccCcceEEeccCchhhHHhhhc----------CCcEEeccc
Q 036436 353 VEVLNHESVGGFVTHCGWNSVLEGVCA----------GVPMLAWPL 388 (485)
Q Consensus 353 ~~lL~~~~~~~~I~HgG~gs~~eal~~----------GvP~v~~P~ 388 (485)
..+|-..+-+.++--||.||+.|.... .+|++++-.
T Consensus 47 k~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 47 KEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 444444444457788999999887432 449998863
No 305
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=35.67 E-value=3.2e+02 Score=25.50 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=34.9
Q ss_pred cchHHhhhccCcceEE--e--ccCchhhHHhhhcCCcEEeccccc--chhHHHHHHHHhhceEEEEecc
Q 036436 350 APQVEVLNHESVGGFV--T--HCGWNSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRS 412 (485)
Q Consensus 350 ~p~~~lL~~~~~~~~I--~--HgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 412 (485)
-...+++..+++ +| | +...--+..++.+|+|+|+-|... +|...-...+ + ++++.+...
T Consensus 52 ~dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~n 116 (257)
T PRK00048 52 DDLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAPN 116 (257)
T ss_pred CCHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEECc
Confidence 344556666666 55 2 222456677899999999988643 3333333332 3 777766654
No 306
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=35.57 E-value=1.7e+02 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCCeEEEEEcCC
Q 036436 19 MVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 19 ~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
++.+++.|.+.| +++ ++|..
T Consensus 2 ~~~~~~~l~~lG--~~i-~AT~g 21 (90)
T smart00851 2 LVELAKRLAELG--FEL-VATGG 21 (90)
T ss_pred HHHHHHHHHHCC--CEE-EEccH
Confidence 468999999999 888 45543
No 307
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=35.50 E-value=2.6e+02 Score=26.30 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=27.3
Q ss_pred hHHHHHHHhhccCCccEEEE-----cCCc-chhHHHHhhhcCCceEEEec
Q 036436 100 NLHETLITISKRSNLKAFVI-----DFLC-NPAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~-----D~~~-~~~~~vA~~~lgIP~v~~~~ 143 (485)
.+.+.+++. ++|+||+ |..+ .-+..+| +.||+|++.+..
T Consensus 102 ~Laa~~~~~----~~~LVl~G~qa~D~~t~qvg~~lA-e~Lg~P~~t~v~ 146 (260)
T COG2086 102 ALAAAVKKI----GPDLVLTGKQAIDGDTGQVGPLLA-ELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHhc----CCCEEEEecccccCCccchHHHHH-HHhCCceeeeEE
Confidence 344555555 9999994 3322 3477799 999999998654
No 308
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=35.34 E-value=1.4e+02 Score=28.42 Aligned_cols=24 Identities=0% Similarity=-0.096 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCCCCC
Q 036436 20 VELGKLILTYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 20 l~La~~L~~rG~~h~Vt~~~~~~~~~ 45 (485)
.++|..++++| ++|.+++..+..+
T Consensus 3 ~a~a~~~a~~g--~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQG--KKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCC--CeEEEEECCCCCC
Confidence 47899999999 9999998765543
No 309
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=35.34 E-value=3.1e+02 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
-|.+++..+.|-..-.+.+|-+.+.+| ++|.++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g--~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHG--KKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEE
Confidence 478889999999999999999999999 999765
No 310
>PRK05920 aromatic acid decarboxylase; Validated
Probab=35.29 E-value=47 Score=29.94 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
|++||++.-.|+.+ ..=...|.+.|.+.| ++|.++.+...
T Consensus 2 ~~krIllgITGsia-a~ka~~lvr~L~~~g--~~V~vi~T~~A 41 (204)
T PRK05920 2 KMKRIVLAITGASG-AIYGVRLLECLLAAD--YEVHLVISKAA 41 (204)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHHHHCC--CEEEEEEChhH
Confidence 56787777666554 468899999999999 99999976644
No 311
>PRK08051 fre FMN reductase; Validated
Probab=35.20 E-value=45 Score=30.58 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=39.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.|+ -+.|++++++++++.+++.+|.++-.....+.. .+...+..+....++++++..
T Consensus 103 ~~~vliagG~--GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~~~~~~~~~ 166 (232)
T PRK08051 103 RPLLLIAGGT--GFSYARSILLTALAQGPNRPITLYWGGREEDHL-YDLDELEALALKHPNLHFVPV 166 (232)
T ss_pred CcEEEEecCc--CcchHHHHHHHHHHhCCCCcEEEEEEeccHHHh-hhhHHHHHHHHHCCCcEEEEE
Confidence 3678887544 489999999999988765677665433332222 344455544333356666554
No 312
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.17 E-value=1.6e+02 Score=25.53 Aligned_cols=98 Identities=6% Similarity=-0.090 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCcHHHHHHHHHhhc
Q 036436 19 MVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRSPADFPALVYELGELNN 98 (485)
Q Consensus 19 ~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (485)
+..|.+...++| .+|.|+..... ..+...+.+...-|++.+...... . . -....
T Consensus 37 ~~~l~~~~~~~~--~~ifllG~~~~-----~~~~~~~~l~~~yP~l~ivg~~~g-~-f-----------------~~~~~ 90 (172)
T PF03808_consen 37 FPDLLRRAEQRG--KRIFLLGGSEE-----VLEKAAANLRRRYPGLRIVGYHHG-Y-F-----------------DEEEE 90 (172)
T ss_pred HHHHHHHHHHcC--CeEEEEeCCHH-----HHHHHHHHHHHHCCCeEEEEecCC-C-C-----------------ChhhH
Confidence 445666677788 89999865432 223333444445678887755432 0 0 00122
Q ss_pred hhHHHHHHHhhccCCccEEEEcCCcc----hhHHHHhhhcCCceEEEecchhHh
Q 036436 99 PNLHETLITISKRSNLKAFVIDFLCN----PAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~~----~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
+.+.+.+++. +||+|++...++ |..... ++++.+ +.++...++.
T Consensus 91 ~~i~~~I~~~----~pdiv~vglG~PkQE~~~~~~~-~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 91 EAIINRINAS----GPDIVFVGLGAPKQERWIARHR-QRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHH-HHCCCC-EEEEECchhh
Confidence 3444445555 999999988765 455556 677777 5555544444
No 313
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=34.47 E-value=2.1e+02 Score=30.31 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=22.9
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..+++++|.|-| .+.+|..-++|+|++-
T Consensus 64 ~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 345589988854 7889999999999994
No 314
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=34.41 E-value=90 Score=28.63 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=40.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEE
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQ 68 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 68 (485)
.++++++.++ =+.|++++.+++.+++++.+|+++......... .+...++.+....+++.++.
T Consensus 110 ~~~v~iagG~--GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~ 172 (238)
T cd06211 110 RPIIFIAGGS--GLSSPRSMILDLLERGDTRKITLFFGARTRAEL-YYLDEFEALEKDHPNFKYVP 172 (238)
T ss_pred CCEEEEeCCc--CHHHHHHHHHHHHhcCCCCcEEEEEecCChhhh-ccHHHHHHHHHhCCCeEEEE
Confidence 4678888655 499999999999988843467776544333322 45555555543445666544
No 315
>PRK08840 replicative DNA helicase; Provisional
Probab=34.18 E-value=34 Score=35.22 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..-.+.+|...+ +.| +.|.|++-+-.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs 257 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMP 257 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCC
Confidence 56777899999999999999987 458 99999976644
No 316
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=34.03 E-value=41 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
|++||.++..|..| ..+|..|+++| |+|+++..
T Consensus 1 ~~mkI~IiG~G~mG-----~~~A~~L~~~G--~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIG-----CYLGGRLAAAG--ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHH-----HHHHHHHHhcC--CcEEEEec
Confidence 67899999888887 46889999999 99999853
No 317
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.96 E-value=52 Score=29.72 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=30.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~ 39 (485)
+-|++..+|+.|-..-...||++|.+++ |+|.-.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i--~~vi~l~ 36 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI--WRVIHLE 36 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh--hhccccc
Confidence 3577888899999999999999999999 9887763
No 318
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=33.95 E-value=1.1e+02 Score=26.45 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=21.9
Q ss_pred cCcceEEeccCc------hhhHHhhhcCCcEEeccc
Q 036436 359 ESVGGFVTHCGW------NSVLEGVCAGVPMLAWPL 388 (485)
Q Consensus 359 ~~~~~~I~HgG~------gs~~eal~~GvP~v~~P~ 388 (485)
...+++++|.|- +++.+|...++|+|++.-
T Consensus 63 g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 63 GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ccceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 334448888874 477889999999999874
No 319
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=33.88 E-value=52 Score=30.55 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 16 LNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 16 v~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
-.-.-.|+++|+++| |+|++++|..
T Consensus 19 gdv~~~L~kaL~~~G--~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQG--HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT---EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcC--CeEEEEEccc
Confidence 344678999999999 9999998754
No 320
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=33.64 E-value=74 Score=31.24 Aligned_cols=30 Identities=7% Similarity=0.133 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCe-EEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCF-SIDIII 39 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h-~Vt~~~ 39 (485)
+||+++-.|+-| ..+|+.|+..| + +++++-
T Consensus 25 ~~VlIiG~GglG-----s~va~~La~aG--vg~i~lvD 55 (338)
T PRK12475 25 KHVLIVGAGALG-----AANAEALVRAG--IGKLTIAD 55 (338)
T ss_pred CcEEEECCCHHH-----HHHHHHHHHcC--CCEEEEEc
Confidence 589999888877 78999999999 8 777773
No 321
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.43 E-value=72 Score=28.29 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred hhHHHHHHHhhccCCccEEEEcCCc-chhHHHHhhhcCCceEEEecch
Q 036436 99 PNLHETLITISKRSNLKAFVIDFLC-NPAFQVSSSTLSIPTYYYFTTA 145 (485)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~-~~~~~vA~~~lgIP~v~~~~~~ 145 (485)
..+.+++++... ...++|...+. .++..+| +++|+|.|.+.++-
T Consensus 47 ~~l~~~i~~~~~--~~~~liGSSlGG~~A~~La-~~~~~~avLiNPav 91 (187)
T PF05728_consen 47 AQLEQLIEELKP--ENVVLIGSSLGGFYATYLA-ERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHhCCC--CCeEEEEEChHHHHHHHHH-HHhCCCEEEEcCCC
Confidence 445566666621 12366655544 4566789 99999999887644
No 322
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=33.43 E-value=41 Score=28.77 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=24.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
+|.++..|..|+ +||..|+++| |+|++.+..
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g--~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNG--HEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCT--EEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcC--CEEEEEecc
Confidence 466666666664 7999999999 999999654
No 323
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=33.24 E-value=95 Score=28.02 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=39.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.++ -+.|++++.+++...+++.+|+++......+.. .+...++.+....+++.++..
T Consensus 98 ~~~v~iagG~--Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 98 GPLLLVGAGT--GLAPLWGIARAALRQGHQGEIRLVHGARDPDDL-YLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCEEEEecCc--chhhHHHHHHHHHhcCCCccEEEEEecCChhhc-cCHHHHHHHHHHCCCeEEEEE
Confidence 3677776443 599999999999877755667766544333333 455555555433456666544
No 324
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=33.09 E-value=82 Score=20.53 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHhcC-chHHHHHHHHHHH
Q 036436 420 SSAELEQRVSELMDS-EKGRAVKERAVAM 447 (485)
Q Consensus 420 ~~~~l~~ai~~vl~~-~~~~~~~~~a~~l 447 (485)
++++|.+||..+.++ -+ +++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 478999999999876 34 67666654
No 325
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.90 E-value=4.5e+02 Score=25.16 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=30.6
Q ss_pred eEeecccchH---HhhhccCcceEEeccCchhhHHhhhcCCcEEec
Q 036436 344 LVVESWAPQV---EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (485)
Q Consensus 344 ~~v~~~~p~~---~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 386 (485)
+++.+|+||+ .+|-.|++- +-. |--|..-|..+|.|.+=-
T Consensus 240 vvklPFvpqddyd~LL~lcD~n--~VR-GEDSFVRAq~agkPflWH 282 (370)
T COG4394 240 VVKLPFVPQDDYDELLWLCDFN--LVR-GEDSFVRAQLAGKPFLWH 282 (370)
T ss_pred EEEecCCcHhHHHHHHHhcccc--eee-cchHHHHHHHcCCCcEEE
Confidence 5566899974 588888873 333 678999999999998743
No 326
>PRK05713 hypothetical protein; Provisional
Probab=32.89 E-value=69 Score=30.98 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=39.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEE
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFH 67 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 67 (485)
.++++++.|+. +.|++++++.+.+++++.+|+++......+.. .+...+..+....+++.+.
T Consensus 193 ~~~vlIAgGtG--iaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~~~~~~ 254 (312)
T PRK05713 193 RPLWLLAAGTG--LAPLWGILREALRQGHQGPIRLLHLARDSAGH-YLAEPLAALAGRHPQLSVE 254 (312)
T ss_pred CcEEEEecCcC--hhHHHHHHHHHHhcCCCCcEEEEEEcCchHHh-hhHHHHHHHHHHCCCcEEE
Confidence 35777776654 99999999999998855567777544332222 3455555543334556654
No 327
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=32.89 E-value=36 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=25.5
Q ss_pred CccEEE-EcCCcc-hhHHHHhhhcCCceEEEecchhHh
Q 036436 113 NLKAFV-IDFLCN-PAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 113 ~pD~VI-~D~~~~-~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
.||+|| .|+..- -+..=| .++|||.|.++-+..-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA-~kl~IP~IaivDTn~dp 150 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEA-IEVGIPVVALCDTDNLT 150 (204)
T ss_pred CCCEEEEECCcccHHHHHHH-HHhCCCEEEEEeCCCCc
Confidence 788888 565433 366688 99999999988755433
No 328
>PRK14099 glycogen synthase; Provisional
Probab=32.87 E-value=63 Score=33.57 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.5
Q ss_pred cEEEEEcC------CCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 3 DTIVLYTS------PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 3 ~~il~~~~------~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
+||++++. -+.|=-.-.-+|.++|+++| |+|.++.|..
T Consensus 4 ~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g--~~v~v~~P~y 47 (485)
T PRK14099 4 LRVLSVASEIFPLIKTGGLADVAGALPAALKAHG--VEVRTLVPGY 47 (485)
T ss_pred cEEEEEEeccccccCCCcHHHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 58998886 23333344678899999999 9999998743
No 329
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=32.53 E-value=61 Score=33.92 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=25.7
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEe
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
++.+.+++. +||+||.+. +...+| +++|||++.++
T Consensus 365 ei~~~I~~~----~pdliiGs~---~er~ia-~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV----EPSAIFGTQ---MERHIG-KRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc----CCCEEEECc---hhhHHH-HHhCCCEEEee
Confidence 334445554 899999986 455678 99999998754
No 330
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.42 E-value=2.4e+02 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=22.8
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 355589898865 6789999999999984
No 331
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.38 E-value=39 Score=30.19 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=25.5
Q ss_pred CccEEE-EcCCcc-hhHHHHhhhcCCceEEEecchhHh
Q 036436 113 NLKAFV-IDFLCN-PAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 113 ~pD~VI-~D~~~~-~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
.||+|| .|+..- -+..-| .++|||.|.++-+..-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA-~~l~IP~Iai~DTn~dp 144 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEA-SEVGIPIVALCDTDNPL 144 (196)
T ss_pred CCCEEEEECCccccHHHHHH-HHcCCCEEEEeeCCCCC
Confidence 788887 565443 466688 99999999987755433
No 332
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=32.19 E-value=1.9e+02 Score=30.49 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=22.3
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 64 VGVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44489888855 7889999999999994
No 333
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=32.14 E-value=81 Score=26.53 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=29.6
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeC
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRA 315 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~ 315 (485)
...|+|++||......+.++++++.+. .+.+++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 349999999999777888999998885 35777776543
No 334
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.12 E-value=3e+02 Score=29.20 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=22.9
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 67 KVGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 355589998865 6789999999999984
No 335
>PRK08266 hypothetical protein; Provisional
Probab=32.08 E-value=2.9e+02 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=22.3
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 44588888855 7899999999999984
No 336
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=31.92 E-value=64 Score=33.82 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=25.5
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEe
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
++.+.+++. +||+||.+. ....+| +++|||++.+.
T Consensus 353 el~~~i~~~----~PdliiG~~---~er~~a-~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA----APELVLGTQ---MERHSA-KRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc----CCCEEEEcc---hHHHHH-HHcCCCEEEec
Confidence 344444444 899999876 466688 99999998654
No 337
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.88 E-value=67 Score=30.55 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=23.2
Q ss_pred ccCcceEEeccCchhhHHhhh---cCCcEEeccc
Q 036436 358 HESVGGFVTHCGWNSVLEGVC---AGVPMLAWPL 388 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~eal~---~GvP~v~~P~ 388 (485)
.+++ +|.-||-||+++++. .++|++.++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 4566 999999999999874 4568888865
No 338
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.84 E-value=63 Score=28.25 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=20.2
Q ss_pred CccEEEEcCCcch--hHHHHhhhcCCceEEEe
Q 036436 113 NLKAFVIDFLCNP--AFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 113 ~pD~VI~D~~~~~--~~~vA~~~lgIP~v~~~ 142 (485)
+||+||....... ....- ++.|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l-~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKL-EQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHH-HHcCCCEEEeC
Confidence 9999998654332 23345 67999998764
No 339
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=31.79 E-value=3.2e+02 Score=28.88 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=40.8
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc----c---------ccchhHHHHHHHHhhceEEEEeccCCCCCccCH
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP----L---------YAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSS 421 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P----~---------~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 421 (485)
.+++++|.|-| .+.+|...++|+|++- . ..||....+-++ +....+...+ --.
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~t---k~~~~v~~~~-----~~~ 143 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMA---KWVAEIDDAA-----RIP 143 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhh---ceeeecCCHH-----HHH
Confidence 44589998855 7889999999999883 1 125655555553 3344443222 124
Q ss_pred HHHHHHHHHHhcCc
Q 036436 422 AELEQRVSELMDSE 435 (485)
Q Consensus 422 ~~l~~ai~~vl~~~ 435 (485)
+.+.+|++..++.+
T Consensus 144 ~~~~~A~~~A~~~~ 157 (557)
T PRK08199 144 ELVSRAFHVATSGR 157 (557)
T ss_pred HHHHHHHHHHhcCC
Confidence 55666666665543
No 340
>PRK14098 glycogen synthase; Provisional
Probab=31.71 E-value=66 Score=33.45 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=28.6
Q ss_pred cEEEEEcC------CCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 3 DTIVLYTS------PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 3 ~~il~~~~------~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
+||++++. -+.|=-.-.-+|.++|+++| |+|.++.|..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g--~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEG--FEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 57888876 23333444678999999999 9999998743
No 341
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=31.53 E-value=3.4e+02 Score=23.46 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=44.8
Q ss_pred eEEEcCchhhHHHHHHHHHhcccCCCCCCCCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHH
Q 036436 214 GIIVNTFELLQERAIKAMLEGQCIPGETLPPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSK 293 (485)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~ 293 (485)
..++-+.++.-......+...+ |++..+|-....-.. ...+++.+.+....++ +|+|++|+=- +..
T Consensus 49 v~llG~~~~~~~~~~~~l~~~y-------p~l~i~g~~~g~~~~----~~~~~i~~~I~~~~pd-iv~vglG~Pk--QE~ 114 (171)
T cd06533 49 VFLLGAKPEVLEKAAERLRARY-------PGLKIVGYHHGYFGP----EEEEEIIERINASGAD-ILFVGLGAPK--QEL 114 (171)
T ss_pred EEEECCCHHHHHHHHHHHHHHC-------CCcEEEEecCCCCCh----hhHHHHHHHHHHcCCC-EEEEECCCCH--HHH
Confidence 3344454554445555566665 778777733222111 2233366666654333 9999998542 222
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCC
Q 036436 294 QLKEMAIGLERSGVKFLWVVRAP 316 (485)
Q Consensus 294 ~~~~i~~al~~~~~~~i~~~~~~ 316 (485)
.+ .+-....+..++..+++.
T Consensus 115 ~~---~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 115 WI---ARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred HH---HHHHHHCCCCEEEEecee
Confidence 22 222333466666667664
No 342
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=31.52 E-value=71 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
-++|+..||.|-..=..+||.+|.++| +.|+|++..
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g--~sv~f~~~~ 142 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFITAP 142 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEEHH
Confidence 578889999999999999999999999 999999543
No 343
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=31.42 E-value=84 Score=28.70 Aligned_cols=64 Identities=6% Similarity=0.004 Sum_probs=40.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
+++++++.+ .-+.|++++++++.+.+++.+|+++-.....+.. .+...+..+....+++++...
T Consensus 109 ~~~vliagG--tGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 109 RPRWFVAGG--TGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAEL-FYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred ccEEEEccC--cchhHHHHHHHHHHhcCCCceEEEEEecCCHHHh-hhHHHHHHHHHhCCCeEEEEE
Confidence 367888766 3699999999999887754677776544332222 344555554434456666543
No 344
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.26 E-value=57 Score=33.16 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=27.1
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEe
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
++.+++++. +||++|.... ...+| +++|||++.+.
T Consensus 360 e~~~~i~~~----~pDliig~~~---~~~~a-~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL----KPDLIGSGIK---EKYVF-QKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh----CCCEEEecCc---chhhh-hhcCCCeEeCC
Confidence 455666666 9999999874 56689 99999997653
No 345
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.94 E-value=2.8e+02 Score=29.42 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=21.9
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 71 ~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 71 VGVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488888754 7889999999999984
No 346
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.90 E-value=2.1e+02 Score=28.61 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~ 45 (485)
-|+|+..-+.|-..-+..||..++++| ..+.+++..+++.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADTFRA 142 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcC--CceeEEeeccccc
Confidence 478888899999999999999999999 9999998876654
No 347
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=30.87 E-value=1.6e+02 Score=28.84 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.0
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEEec
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~ 143 (485)
+-|++|+.. .....+| ..+|+|+|.++-
T Consensus 262 ~a~l~v~nD--SGp~HlA-aA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD--SAPAHIA-AAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC--CHHHHHH-HHcCCCEEEEEC
Confidence 679999874 4556677 789999999864
No 348
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.85 E-value=1.6e+02 Score=26.32 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=50.3
Q ss_pred hhHHhhhcCCcEEecccccchhH-HHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHH
Q 036436 372 SVLEGVCAGVPMLAWPLYAEQKM-IKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEK-GRAVKERAVAMKE 449 (485)
Q Consensus 372 s~~eal~~GvP~v~~P~~~DQ~~-na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~~ 449 (485)
|+.+++.-+.=.+..|+..=++. ..-.|. . .-..-...-+.+.+-|-+ -+.+++.++++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~-a----------------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~ 86 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVA-A----------------VITGLYITILQKLLIDQEKMKELQKMMKEFQK 86 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHH-H----------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55566666655566665433332 323332 2 334455566667777766 5789999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHH
Q 036436 450 AAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 450 ~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
+++++ ++.|+. ..+++|-++
T Consensus 87 e~~eA-~~~~d~-~~lkkLq~~ 106 (201)
T COG1422 87 EFREA-QESGDM-KKLKKLQEK 106 (201)
T ss_pred HHHHH-HHhCCH-HHHHHHHHH
Confidence 99988 555664 666666553
No 349
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=30.70 E-value=62 Score=28.59 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=31.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~ 45 (485)
+||++.-.|+.|=+. ...+.+.|+++| ++|.++.+....+
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g--~~V~vv~T~~A~~ 41 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRG--YQVTVLMTKAATK 41 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCC--CEEEEEEChhHHH
Confidence 577777777776555 899999999999 9998887665444
No 350
>PRK07574 formate dehydrogenase; Provisional
Probab=30.55 E-value=4.1e+02 Score=26.62 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=43.5
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.+-.|++|++. +.+++-+...|..++. +... ..+...... .+ +..+....+++
T Consensus 193 ktVGIvG~G~IG-------~~vA~~l~~fG~~V~~-~dr~-------------~~~~~~~~~---~g--~~~~~~l~ell 246 (385)
T PRK07574 193 MTVGIVGAGRIG-------LAVLRRLKPFDVKLHY-TDRH-------------RLPEEVEQE---LG--LTYHVSFDSLV 246 (385)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCEEEE-ECCC-------------CCchhhHhh---cC--ceecCCHHHHh
Confidence 348889999887 6677777778887643 3221 011111111 12 22245678899
Q ss_pred hccCcceEEeccCchhhHHh
Q 036436 357 NHESVGGFVTHCGWNSVLEG 376 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~ea 376 (485)
+.+++ ++.|+-.+.-.+.
T Consensus 247 ~~aDv--V~l~lPlt~~T~~ 264 (385)
T PRK07574 247 SVCDV--VTIHCPLHPETEH 264 (385)
T ss_pred hcCCE--EEEcCCCCHHHHH
Confidence 99999 9999887654333
No 351
>PRK11823 DNA repair protein RadA; Provisional
Probab=30.31 E-value=3.3e+02 Score=27.95 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+++...|+.|-..=++.++..++++| ..|.+++.+..
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g--~~vlYvs~Ees 119 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAG--GKVLYVSGEES 119 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcccc
Confidence 56777799999999999999999889 99999976543
No 352
>PRK07586 hypothetical protein; Validated
Probab=30.23 E-value=2.6e+02 Score=29.22 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=20.3
Q ss_pred cceEEeccCchh------hHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWNS------VLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~gs------~~eal~~GvP~v~~P 387 (485)
.++++.|.|-|. +.+|...++|+|++.
T Consensus 65 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 65 PAATLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred CEEEEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344778877654 447999999999985
No 353
>PRK07524 hypothetical protein; Provisional
Probab=29.92 E-value=3.3e+02 Score=28.60 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.2
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEec
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAW 386 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~ 386 (485)
.++++.|.|-| .+.+|...++|+|++
T Consensus 65 ~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i 96 (535)
T PRK07524 65 PGVCFIITGPGMTNIATAMGQAYADSIPMLVI 96 (535)
T ss_pred CeEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 34488888855 788999999999988
No 354
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.86 E-value=1e+02 Score=28.00 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=35.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
.+|++.+.++..|-....-++-.|..+| ++|++.....+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G--~~Vi~LG~~vp 127 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNG--YEVIDLGVMVP 127 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCC--CEEEECCCCCC
Confidence 4899999999999999999999999999 99999965443
No 355
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=29.85 E-value=1.7e+02 Score=27.69 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 20 VELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 20 l~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
.+|..+|.+.| |+|+++|-.+..
T Consensus 12 ~~L~~~L~~~g--h~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRKGG--HQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHhCC--CeEEEEEcCCcc
Confidence 47889999999 999999865553
No 356
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.76 E-value=1.3e+02 Score=23.28 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=23.2
Q ss_pred CccEEE--EcCCcch----hHHHHhhhcCCceEEEecchhH
Q 036436 113 NLKAFV--IDFLCNP----AFQVSSSTLSIPTYYYFTTAGS 147 (485)
Q Consensus 113 ~pD~VI--~D~~~~~----~~~vA~~~lgIP~v~~~~~~~~ 147 (485)
+.|+|| +|..... +-..| ++.|+|++........
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~a-kk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAA-KKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHH-HHcCCcEEEECCCCHH
Confidence 778886 6665543 33377 8999999987654443
No 357
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.60 E-value=72 Score=33.36 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=22.2
Q ss_pred CCccEEEEcCCcchhHHHHhhhcCCceEEEe
Q 036436 112 SNLKAFVIDFLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 112 ~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
.+||+||.+. ....+| +++|||++.+.
T Consensus 363 ~~pdliiG~~---~er~~a-~~lgip~~~i~ 389 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSA-KRLDIPCGVIS 389 (511)
T ss_pred cCCCEEEECh---HHHHHH-HHcCCCEEEec
Confidence 4899999986 466689 99999998654
No 358
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=29.55 E-value=3.5e+02 Score=22.91 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=25.2
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 8 YTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 8 ~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
-+.++-|-..=.+.|++.|+++| .+|.++
T Consensus 4 ~t~~~~GKT~va~~L~~~l~~~g--~~V~~~ 32 (166)
T TIGR00347 4 GTDTGVGKTVASSALAAKLKKAG--YSVGYY 32 (166)
T ss_pred cCCCCccHHHHHHHHHHHHHHCC--CcEEEE
Confidence 34577888899999999999999 999886
No 359
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=29.48 E-value=96 Score=28.26 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=39.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEE
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQ 68 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 68 (485)
.++++++.++. +.|++++.+++.+.+++.+|+++......+.. .+...+..+....+.+++..
T Consensus 104 ~~~l~iagG~G--iap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~ 166 (232)
T cd06212 104 RPIVLIGGGSG--MAPLLSLLRDMAASGSDRPVRFFYGARTARDL-FYLEEIAALGEKIPDFTFIP 166 (232)
T ss_pred CcEEEEecCcc--hhHHHHHHHHHHhcCCCCcEEEEEeccchHHh-ccHHHHHHHHHhCCCEEEEE
Confidence 36777775443 89999999999988854568777544333322 34555555433345666543
No 360
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=29.43 E-value=1.4e+02 Score=30.24 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=27.9
Q ss_pred eecccchHHhhhccC--cceEEeccCchhhHHhhhcCCcEEe
Q 036436 346 VESWAPQVEVLNHES--VGGFVTHCGWNSVLEGVCAGVPMLA 385 (485)
Q Consensus 346 v~~~~p~~~lL~~~~--~~~~I~HgG~gs~~eal~~GvP~v~ 385 (485)
+.+|-=+.++|..++ .=..+||||--++-.+++.|.-+|+
T Consensus 467 vsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~viVa 508 (561)
T COG2987 467 VSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVA 508 (561)
T ss_pred hhhhHHHHHHhhhccCCcEEEEecCCcccccccccCceEEEe
Confidence 448877888876543 1137899998888888776665554
No 361
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=29.39 E-value=2.9e+02 Score=29.20 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=22.1
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 65 pgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 65 PSACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 44489998854 7889999999999983
No 362
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.36 E-value=3.2e+02 Score=28.98 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=22.9
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..++++.|.|-| .+.+|...++|+|++.
T Consensus 66 ~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 66 KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 355599998855 7889999999999984
No 363
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.30 E-value=1.1e+02 Score=24.43 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEee------cccchHHhhhcc---CcceEEe
Q 036436 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVE------SWAPQVEVLNHE---SVGGFVT 366 (485)
Q Consensus 296 ~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~------~~~p~~~lL~~~---~~~~~I~ 366 (485)
..+++++++.|.++|.+...+ -.....-+...+-+... .|+....|+.-+ .+ ...
T Consensus 15 ~r~~ra~r~~Gi~tv~v~s~~--------------d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i 78 (110)
T PF00289_consen 15 VRIIRALRELGIETVAVNSNP--------------DTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAI 78 (110)
T ss_dssp HHHHHHHHHTTSEEEEEEEGG--------------GTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEE
T ss_pred HHHHHHHHHhCCcceeccCch--------------hcccccccccccceecCcchhhhhhccHHHHhhHhhhhcC--ccc
Q ss_pred ccCchhhHHhhhc
Q 036436 367 HCGWNSVLEGVCA 379 (485)
Q Consensus 367 HgG~gs~~eal~~ 379 (485)
|+|+|-..|...+
T Consensus 79 ~pGyg~lse~~~f 91 (110)
T PF00289_consen 79 HPGYGFLSENAEF 91 (110)
T ss_dssp ESTSSTTTTHHHH
T ss_pred ccccchhHHHHHH
No 364
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.00 E-value=3.2e+02 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=22.4
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 45589988854 7889999999999994
No 365
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=28.99 E-value=4.5e+02 Score=24.79 Aligned_cols=30 Identities=7% Similarity=-0.073 Sum_probs=19.2
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEEecch
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTA 145 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~ 145 (485)
.-|++|+-.. ....=+ -.+|+|++++..+.
T Consensus 241 ~aDl~Is~~G--~T~~E~-~a~g~P~i~i~~~~ 270 (279)
T TIGR03590 241 EADLAIGAAG--STSWER-CCLGLPSLAICLAE 270 (279)
T ss_pred HCCEEEECCc--hHHHHH-HHcCCCEEEEEecc
Confidence 6699999532 222222 34799999886643
No 366
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.96 E-value=5.2e+02 Score=24.72 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHh
Q 036436 297 EMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEG 376 (485)
Q Consensus 297 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~ea 376 (485)
.+++.++..+..+++..+.. ..+|+.|...++.+-+=+ |+++ .=...|.+....|
T Consensus 160 ~~~~~l~~~~~Dlivlagym------------~il~~~~l~~~~~~iiNi-----------HpSl--LP~f~G~~~~~~a 214 (289)
T PRK13010 160 QILDLIETSGAELVVLARYM------------QVLSDDLSRKLSGRAINI-----------HHSF--LPGFKGARPYHQA 214 (289)
T ss_pred HHHHHHHHhCCCEEEEehhh------------hhCCHHHHhhccCCceee-----------Cccc--CCCCCCCCHHHHH
Confidence 45566666666666666442 335555554444322222 3443 3344588889999
Q ss_pred hhcCCcEEeccccc--chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHh
Q 036436 377 VCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 377 l~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl 432 (485)
+.+|+....+-.+. +..+...-+. -.-+.+...+ |.++|.+.+.++-
T Consensus 215 i~~G~k~tG~TvH~v~~~lD~GpII~---Q~~v~V~~~d------t~e~L~~r~~~~E 263 (289)
T PRK13010 215 HARGVKLIGATAHFVTDDLDEGPIIE---QDVERVDHSY------SPEDLVAKGRDVE 263 (289)
T ss_pred HHcCCCeEEEEEEEEcCCCCCCCceE---EEEEEcCCCC------CHHHHHHHHHHHH
Confidence 99999998887642 4444444442 2334444443 7777777776543
No 367
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=28.90 E-value=4.5e+02 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=22.2
Q ss_pred CCccEEEEcCCcchhHH---HHhhhcCCceEEE
Q 036436 112 SNLKAFVIDFLCNPAFQ---VSSSTLSIPTYYY 141 (485)
Q Consensus 112 ~~pD~VI~D~~~~~~~~---vA~~~lgIP~v~~ 141 (485)
.+.|+|+-|-+.+.-.. ++ +..|+|++.-
T Consensus 177 ~gadlIvLDCmGYt~~~r~~~~-~~~g~PVlLs 208 (221)
T PF07302_consen 177 QGADLIVLDCMGYTQEMRDIVQ-RALGKPVLLS 208 (221)
T ss_pred cCCCEEEEECCCCCHHHHHHHH-HHhCCCEEeH
Confidence 49999999986665333 66 8899999863
No 368
>PRK07004 replicative DNA helicase; Provisional
Probab=28.88 E-value=1.7e+02 Score=30.07 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~~ 44 (485)
+++..-|+.|-..-.+.+|..++ +.| ..|.|++-+-..
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~ 254 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPG 254 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCH
Confidence 66777899999999999999886 468 899999766443
No 369
>PRK13604 luxD acyl transferase; Provisional
Probab=28.65 E-value=1e+02 Score=29.77 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=29.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
.+++++++..++-.-+..+|+.|+++| ..|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G--~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNG--FHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCC--CEEEEe
Confidence 678889999998877999999999999 888887
No 370
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=28.61 E-value=1.8e+02 Score=24.58 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=48.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPP 72 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 72 (485)
.+|+|++.-+.+|+.-.+.+.+.+++..|+|.+.+..=+- -...+..+....+.+++......
T Consensus 60 ~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL-------~~~~i~~L~~~~~n~evr~Fn~s 122 (142)
T PF07801_consen 60 SDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGL-------SEEQIKKLKKNFCNVEVRKFNFS 122 (142)
T ss_pred CccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCC-------CHHHHHHHHhcCCceEEEECCCc
Confidence 4899999999999999999999999999999999994331 12244444334577888777764
No 371
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.55 E-value=85 Score=31.96 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=21.7
Q ss_pred CCccEEEEcCCcchhHHHHhhhcCCceEEEe
Q 036436 112 SNLKAFVIDFLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 112 ~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
.+||++|.+. ....+| +++|||++.+.
T Consensus 369 ~~pdliig~~---~~~~~a-~~~gip~~~~~ 395 (430)
T cd01981 369 TEPELIFGTQ---MERHIG-KRLDIPCAVIS 395 (430)
T ss_pred hCCCEEEecc---hhhHHH-HHcCCCEEEEe
Confidence 3899999986 355578 99999998764
No 372
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=28.50 E-value=1.3e+02 Score=27.22 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=39.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEE
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQ 68 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 68 (485)
.++++++.++ -+.|++++.++|.++++..+|+++-.....+.. .+...+..+....+.+.+..
T Consensus 99 ~~ivliagG~--GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~ 161 (224)
T cd06189 99 RPLILIAGGT--GFAPIKSILEHLLAQGSKRPIHLYWGARTEEDL-YLDELLEAWAEAHPNFTYVP 161 (224)
T ss_pred CCEEEEecCc--CHHHHHHHHHHHHhcCCCCCEEEEEecCChhhc-cCHHHHHHHHHhCCCeEEEE
Confidence 3677777554 599999999999887644566666443333322 44555555543345666553
No 373
>PRK04328 hypothetical protein; Provisional
Probab=28.43 E-value=4.3e+02 Score=24.49 Aligned_cols=37 Identities=14% Similarity=-0.044 Sum_probs=28.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+++...|+.|-..=.+.++.+-+++| ..+.+++.+..
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~g--e~~lyis~ee~ 62 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQMG--EPGVYVALEEH 62 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEeeCC
Confidence 56677788999777777777666779 99999976543
No 374
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=28.41 E-value=3.2e+02 Score=29.05 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=22.7
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 64 RMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 345588888865 6679999999999995
No 375
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.38 E-value=74 Score=33.79 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=38.5
Q ss_pred ccCcceEEeccCchhhHHhhh----cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhc
Q 036436 358 HESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMD 433 (485)
Q Consensus 358 ~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~ 433 (485)
.+++ +|+-||=||++.+.+ .++|++.+-.-. +|. ..+ ++.+++.++++++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G~------------lGF-----L~~-----~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMGT------------VGF-----LTE-----FSKEEIFKAIDSIIS 403 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCCC------------CCc-----Ccc-----cCHHHHHHHHHHHHc
Confidence 3455 999999999999976 478988884311 122 122 677888888888887
Q ss_pred Cc
Q 036436 434 SE 435 (485)
Q Consensus 434 ~~ 435 (485)
+.
T Consensus 404 g~ 405 (569)
T PRK14076 404 GE 405 (569)
T ss_pred CC
Confidence 55
No 376
>PRK07064 hypothetical protein; Provisional
Probab=27.79 E-value=3.9e+02 Score=28.06 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.2
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 67 ~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 67 LGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 45589998855 7888999999999883
No 377
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=27.74 E-value=3.3e+02 Score=26.01 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=57.4
Q ss_pred HHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhHHhh
Q 036436 298 MAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGV 377 (485)
Q Consensus 298 i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~eal 377 (485)
+++.++..+..+++..+.. ..+|+.|.+..+.+-+=+ |+++ .=.+.|.+.+..|+
T Consensus 157 ~~~~l~~~~~Dlivlagy~------------~il~~~~l~~~~~~iiNi-----------HpSL--LP~~rG~~~~~~ai 211 (286)
T PRK13011 157 VLDVVEESGAELVVLARYM------------QVLSPELCRKLAGRAINI-----------HHSF--LPGFKGAKPYHQAY 211 (286)
T ss_pred HHHHHHHhCcCEEEEeChh------------hhCCHHHHhhccCCeEEe-----------cccc--CCCCCCCcHHHHHH
Confidence 5555566666666665442 335555555443222222 4444 44556888899999
Q ss_pred hcCCcEEeccccc--chhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHH
Q 036436 378 CAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSEL 431 (485)
Q Consensus 378 ~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~v 431 (485)
.+|+....+-.+. +..+-..-+. -.-+.+...+ |.++|.+.+.++
T Consensus 212 ~~G~~~tG~TvH~v~~~~D~G~Ii~---Q~~v~I~~~d------t~~~L~~r~~~~ 258 (286)
T PRK13011 212 ERGVKLIGATAHYVTDDLDEGPIIE---QDVERVDHAY------SPEDLVAKGRDV 258 (286)
T ss_pred HCCCCeEEEEEEEEcCCCcCCCcEE---EEEEEcCCCC------CHHHHHHHHHHH
Confidence 9999988887642 3333333332 2334444444 788888877663
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=27.53 E-value=2.8e+02 Score=28.31 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEcCCCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~-~rG~~h~Vt~~~~~~~~~ 45 (485)
-++++..++.|-..=...||..|. ++| ..|.+++....+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccch
Confidence 477888899999999999999997 689 9999998775543
No 379
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=27.49 E-value=2.1e+02 Score=30.36 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.1
Q ss_pred ceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 362 ~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
++++.|.|-| .+.+|-..++|+|++.
T Consensus 74 ~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 74 VAVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 3477777744 7899999999999994
No 380
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.37 E-value=3.1e+02 Score=29.18 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=21.9
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 78 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 78 VGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 45588888866 5789999999999984
No 381
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=27.21 E-value=76 Score=22.07 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 036436 415 GDGLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVES 471 (485)
Q Consensus 415 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (485)
++|.++.+++.+.+..+..... ........+.+-+.++.+++.....++|.+.
T Consensus 13 ~~G~i~~~el~~~~~~~~~~~~----~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRDMS----DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSHST----HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhccccc----HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 4788999999999998875432 2233333333333446666665677777653
No 382
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=27.21 E-value=3e+02 Score=28.47 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=67.6
Q ss_pred ccchH---HhhhccCcceEEe--ccCchhhH-HhhhcCCc----EEecccccchhHHHHHHHHhhceEEEEeccCCCCCc
Q 036436 349 WAPQV---EVLNHESVGGFVT--HCGWNSVL-EGVCAGVP----MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 349 ~~p~~---~lL~~~~~~~~I~--HgG~gs~~-eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
-+|+. +++..+++ |+|| .-|+|.+. |-+++-.| +|++.- +.=|+ +.|+-++.+++
T Consensus 339 ~~~~~~l~alyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLILSe----fAGaA---~~L~~AllVNP------- 403 (474)
T PRK10117 339 HFDRKLLMKIFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQ----FAGAA---NELTSALIVNP------- 403 (474)
T ss_pred CCCHHHHHHHHHhccE-EEecccccccccccchheeeecCCCCccEEEec----ccchH---HHhCCCeEECC-------
Confidence 35554 45556776 4454 35888665 76666543 233321 11122 34566788888
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCC
Q 036436 419 VSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRGRMA 478 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 478 (485)
.+.+.++++|.+.|+-+. ++-++|.+++.+.+. ..+...=.+.+++.|......
T Consensus 404 ~d~~~~A~Ai~~AL~Mp~-~Er~~R~~~l~~~v~-----~~dv~~W~~~fL~~L~~~~~~ 457 (474)
T PRK10117 404 YDRDEVAAALDRALTMPL-AERISRHAEMLDVIV-----KNDINHWQECFISDLKQIVPR 457 (474)
T ss_pred CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhh-----hCCHHHHHHHHHHHHHHhhhc
Confidence 679999999999998662 234555555556555 345557788888888877433
No 383
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.20 E-value=4.3e+02 Score=23.22 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=34.5
Q ss_pred hhc--CCcEEeccccc----ch---hHHHHHHHHhhceEEEEeccCC-------CCCccCHHHHHHHHHHHhc
Q 036436 377 VCA--GVPMLAWPLYA----EQ---KMIKAVVVEEMKVGLAVTRSEE-------GDGLVSSAELEQRVSELMD 433 (485)
Q Consensus 377 l~~--GvP~v~~P~~~----DQ---~~na~~v~~~~G~G~~l~~~~~-------~~~~~~~~~l~~ai~~vl~ 433 (485)
++. ++|+|++|-.. +. ..|-.++. ++|+=+.-+.... ..+..+.++|.+.+.+.++
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~-~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLK-EDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHH-HCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 445 89999999633 22 45667774 4576555544221 1234677888888877664
No 384
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=27.09 E-value=2.8e+02 Score=29.40 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCeEeecccc-hHH-------hhhccCcceEE
Q 036436 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAP-QVE-------VLNHESVGGFV 365 (485)
Q Consensus 295 ~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~n~~v~~~~p-~~~-------lL~~~~~~~~I 365 (485)
-..+++.|+..|.+.|+-+.+... ..+.+.+ +.+++.+..-.. +.+ -...-..++++
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~~--------------~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~ 78 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGAV--------------LPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAV 78 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcch--------------HHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEE
Confidence 355888888888888887766410 1122222 112332211110 111 01112355589
Q ss_pred eccCch------hhHHhhhcCCcEEecc
Q 036436 366 THCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 366 ~HgG~g------s~~eal~~GvP~v~~P 387 (485)
+|.|-| .+.+|.+.++|+|++.
T Consensus 79 ~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 79 VTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred ECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 998865 6789999999999995
No 385
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.00 E-value=73 Score=27.83 Aligned_cols=44 Identities=7% Similarity=0.120 Sum_probs=29.2
Q ss_pred chhHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEEecchh
Q 036436 98 NPNLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYYFTTAG 146 (485)
Q Consensus 98 ~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~~~~ 146 (485)
..+++..++++.+ .+.|+||.+.. +...| +++|+|++.+.+..-
T Consensus 111 ~~e~~~~i~~~~~-~G~~viVGg~~---~~~~A-~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 111 EEEIEAAIKQAKA-EGVDVIVGGGV---VCRLA-RKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHHHHHHHHH-TT--EEEESHH---HHHHH-HHTTSEEEESS--HH
T ss_pred HHHHHHHHHHHHH-cCCcEEECCHH---HHHHH-HHcCCcEEEEEecHH
Confidence 4456666665533 58999999963 57899 999999998766443
No 386
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=26.69 E-value=51 Score=30.94 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=25.6
Q ss_pred CCccEEE-EcCCc-chhHHHHhhhcCCceEEEecchhHh
Q 036436 112 SNLKAFV-IDFLC-NPAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 112 ~~pD~VI-~D~~~-~~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
..||+|| .|+.. ..+..=| .++|||.|.+.-+..-+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea-~kl~IPiIaivDTn~dp 193 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEA-RKLGIPVVAIVDTNCDP 193 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHH-HHhCCCEEEEeeCCCCC
Confidence 4699888 45433 3466688 99999999987655433
No 387
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=26.66 E-value=1.2e+02 Score=26.85 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCC
Q 036436 6 VLYTSPGRGHLNSMVELGKLILTYH 30 (485)
Q Consensus 6 l~~~~~~~GHv~P~l~La~~L~~rG 30 (485)
.++-.|+.||..=|+.|-+.|.++=
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~y 65 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDLY 65 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhc
Confidence 4555789999999999999997663
No 388
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=6.4e+02 Score=24.96 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=73.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLRS 82 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~ 82 (485)
+|+.++-.|--||--.|.-=|..|++.| .+|.++....... .+... ..|.++++.++...- +... .+
T Consensus 13 ~ra~vvVLGDvGRSPRMqYHA~Sla~~g--f~VdliGy~~s~p--------~e~l~-~hprI~ih~m~~l~~-~~~~-p~ 79 (444)
T KOG2941|consen 13 KRAIVVVLGDVGRSPRMQYHALSLAKLG--FQVDLIGYVESIP--------LEELL-NHPRIRIHGMPNLPF-LQGG-PR 79 (444)
T ss_pred ceEEEEEecccCCChHHHHHHHHHHHcC--CeEEEEEecCCCC--------hHHHh-cCCceEEEeCCCCcc-cCCC-ch
Confidence 5888899999999999999999999999 9999995433311 11111 367999999997422 1111 11
Q ss_pred CCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEEEcC-CcchhHHHH---hhhcCCceEEEecchhHh
Q 036436 83 PADFPALVYELGELNNPNLHETLITISKRSNLKAFVIDF-LCNPAFQVS---SSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI~D~-~~~~~~~vA---~~~lgIP~v~~~~~~~~~ 148 (485)
-..-.++.++ ++..++..+.-..++|.++... -+.....+| +...|..+++=|+-..+.
T Consensus 80 --~~~l~lKvf~-----Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 80 --VLFLPLKVFW-----QFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred --hhhhHHHHHH-----HHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1111112222 2222222222224889888654 222333333 134588888877655444
No 389
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=26.52 E-value=3e+02 Score=24.85 Aligned_cols=37 Identities=16% Similarity=-0.016 Sum_probs=29.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+++...|+.|-..=.+.++....++| ..|.+++.+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g--~~~~y~s~e~~ 55 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNG--EKAMYISLEER 55 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCC
Confidence 55666688999888888888877789 99999987654
No 390
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=26.44 E-value=78 Score=28.10 Aligned_cols=38 Identities=8% Similarity=0.046 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
+||++.-.|+.|=+.-.+.+.++|.+.| ++|+.+.+..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g--~~V~vI~S~~ 38 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEG--AEVTPIVSET 38 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCc--CEEEEEEchh
Confidence 4677777777777777779999999999 9998886553
No 391
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.33 E-value=4.6e+02 Score=23.21 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=35.3
Q ss_pred cEEEEEcC---CC-ccCHHHH-HHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCC
Q 036436 3 DTIVLYTS---PG-RGHLNSM-VELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPP 71 (485)
Q Consensus 3 ~~il~~~~---~~-~GHv~P~-l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 71 (485)
+||+++.. |+ +|-+--+ -.|+..|+++| |+|++++........ ...-.+++...+|.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g--~~v~Vyc~~~~~~~~----------~~~y~gv~l~~i~~ 63 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKG--IDVTVYCRSDYYPYK----------EFEYNGVRLVYIPA 63 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC--ceEEEEEccCCCCCC----------CcccCCeEEEEeCC
Confidence 57777765 22 5555443 46888888999 999999765432211 01224677777774
No 392
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.28 E-value=3.9e+02 Score=28.35 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=22.7
Q ss_pred CcceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 360 SVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 360 ~~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 67 ~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 67 EVGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred CceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 355588888865 5789999999999993
No 393
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=26.05 E-value=3.1e+02 Score=31.12 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=60.7
Q ss_pred cchH---HhhhccCcceEEec---cCchh-hHHhhhcCC---cEEecccccchhHHHHHHHHhhc-eEEEEeccCCCCCc
Q 036436 350 APQV---EVLNHESVGGFVTH---CGWNS-VLEGVCAGV---PMLAWPLYAEQKMIKAVVVEEMK-VGLAVTRSEEGDGL 418 (485)
Q Consensus 350 ~p~~---~lL~~~~~~~~I~H---gG~gs-~~eal~~Gv---P~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~ 418 (485)
+|+. +++..+++ ++-- -|+|. ..|+++++. -+++++-+. --| +.+| -|+.+++
T Consensus 448 l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa----~~L~~~AllVNP------- 511 (934)
T PLN03064 448 LDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAA----QSLGAGAILVNP------- 511 (934)
T ss_pred CCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chH----HHhCCceEEECC-------
Confidence 5544 46667777 6654 48875 459999955 122223211 111 2344 4678888
Q ss_pred cCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 419 VSSAELEQRVSELMD-SEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
.+.+.++++|.++|+ +++ +-+++.+++.+.+. .-+...-++.|++.|.+.
T Consensus 512 ~D~~~vA~AI~~AL~M~~~--Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 512 WNITEVAASIAQALNMPEE--EREKRHRHNFMHVT-----THTAQEWAETFVSELNDT 562 (934)
T ss_pred CCHHHHHHHHHHHHhCCHH--HHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHH
Confidence 679999999999997 433 23444444444443 234446666676666654
No 394
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.90 E-value=84 Score=29.23 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=27.6
Q ss_pred chhHHHHHHHhhccCCccEEEEcCCcch-----hHHHHhhhcCCceEEEe
Q 036436 98 NPNLHETLITISKRSNLKAFVIDFLCNP-----AFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 98 ~~~~~~ll~~~~~~~~pD~VI~D~~~~~-----~~~vA~~~lgIP~v~~~ 142 (485)
.+.-..+++++ +.|+||+-...-. =..+| +.+|||++.+-
T Consensus 185 ~~~n~all~q~----~id~vItK~SG~~Gg~~~Ki~aA-~eLgi~VI~I~ 229 (257)
T COG2099 185 EEDNKALLEQY----RIDVVVTKNSGGAGGTYEKIEAA-RELGIPVIMIE 229 (257)
T ss_pred hHHHHHHHHHh----CCCEEEEccCCcccCcHHHHHHH-HHcCCcEEEEe
Confidence 34445666776 9999997653332 23377 99999999863
No 395
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.88 E-value=4.8e+02 Score=23.46 Aligned_cols=47 Identities=19% Similarity=0.049 Sum_probs=30.8
Q ss_pred cccccccccCC--CCCcEEEEecCCCccCCHHhHHHHHHHHHhC-CCeEEEE
Q 036436 264 RHECLSWLDSK--PSRSVLFLCFGSLGSFSSKQLKEMAIGLERS-GVKFLWV 312 (485)
Q Consensus 264 ~~~~~~~l~~~--~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~~i~~ 312 (485)
.+.+.+++... ....++||...|. ...+....+..+++.. +..+...
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 34455555543 3345899988777 3456677789999988 8765433
No 396
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=25.81 E-value=3.6e+02 Score=24.24 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=26.4
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 5 IVLY-TSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 5 il~~-~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
|++. +...-|-..=.+.|++.|+++| .+|.++
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g--~~v~~~ 34 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAG--YSVAGY 34 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcC--CceEEE
Confidence 3444 4466899999999999999999 999887
No 397
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=25.79 E-value=1.2e+02 Score=28.87 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=28.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
.++++++.++ =+.|++.++++|.+++ ++|+++...
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~--~~v~l~~g~ 133 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAG--NKVITIIGA 133 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCC--CeEEEEEec
Confidence 3788887655 4999999999999999 888877543
No 398
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=25.78 E-value=98 Score=27.53 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=22.5
Q ss_pred CCccEEEEcC--CcchhHHHHhhhcCCceEEEe
Q 036436 112 SNLKAFVIDF--LCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 112 ~~pD~VI~D~--~~~~~~~vA~~~lgIP~v~~~ 142 (485)
.++|+|++=. ..+.|..+| ..+|+|++...
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA-~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAA-LALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHH-HHHCCCEEEEE
Confidence 4899999543 345577788 99999999763
No 399
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=25.76 E-value=3.5e+02 Score=24.76 Aligned_cols=38 Identities=13% Similarity=-0.051 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
-+++...|+.|-..=.+.++.+-+++| ..|.+++.+..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~g--e~~lyvs~ee~ 60 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMG--EPGIYVALEEH 60 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEEeeCC
Confidence 367778899999888888777766889 89999976643
No 400
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.70 E-value=2.7e+02 Score=25.77 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=31.1
Q ss_pred hhchhHHHHHHHhhccCCccEEEEcCCcch---hHHHHhhhcCCceEEE
Q 036436 96 LNNPNLHETLITISKRSNLKAFVIDFLCNP---AFQVSSSTLSIPTYYY 141 (485)
Q Consensus 96 ~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~---~~~vA~~~lgIP~v~~ 141 (485)
...+.+..+++++ .+-++.+.|..+.+ +..+| ++.|||++.-
T Consensus 135 sn~~aM~~~m~~L---k~r~l~flDs~T~a~S~a~~iA-k~~gVp~~~r 179 (250)
T COG2861 135 SNEDAMEKLMEAL---KERGLYFLDSGTIANSLAGKIA-KEIGVPVIKR 179 (250)
T ss_pred CcHHHHHHHHHHH---HHCCeEEEcccccccchhhhhH-hhcCCceeee
Confidence 3455666777776 37899999987765 45588 9999999863
No 401
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=25.66 E-value=56 Score=29.97 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=25.8
Q ss_pred CCccEEE-EcCC-cchhHHHHhhhcCCceEEEecchhHh
Q 036436 112 SNLKAFV-IDFL-CNPAFQVSSSTLSIPTYYYFTTAGSV 148 (485)
Q Consensus 112 ~~pD~VI-~D~~-~~~~~~vA~~~lgIP~v~~~~~~~~~ 148 (485)
..||+|| .|+. ...+..=| .++|||.|++.-+..-+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea-~~l~IP~I~ivDTn~~p 191 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEA-RKLGIPVVAIVDTNCDP 191 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHH-HHcCCCEEEEeeCCCCC
Confidence 4699888 4543 23466788 99999999987655543
No 402
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=25.65 E-value=1.7e+02 Score=26.32 Aligned_cols=64 Identities=6% Similarity=-0.016 Sum_probs=39.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.++ -+.|++++.+.|.+.++..+|+++-.....+.. .+...+..+....+.+++..+
T Consensus 99 ~~~lliagG~--GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 99 RPVLCIAGGT--GLAPLRAIVEDALRRGEPRPVHLFFGARTERDL-YDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred CCEEEEecCc--CHHHHHHHHHHHHhcCCCCCEEEEEecCChhhh-cChHHHHHHHHhCCCeEEEEE
Confidence 4678887555 599999999999987644566666544333322 344555544333455665433
No 403
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=25.60 E-value=1.3e+02 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.014 Sum_probs=22.8
Q ss_pred CCccEEEEcC--CcchhHHHHhhhcCCceEEE
Q 036436 112 SNLKAFVIDF--LCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 112 ~~pD~VI~D~--~~~~~~~vA~~~lgIP~v~~ 141 (485)
.++|.|++=. .+..|..+| .++|+|+|..
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA-~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVA-LELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHH-HHhCCCEEEE
Confidence 4899999433 456688899 9999999964
No 404
>PRK11914 diacylglycerol kinase; Reviewed
Probab=25.54 E-value=4.2e+02 Score=25.31 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=23.5
Q ss_pred cCcceEEeccCchhhHHhh----hcCCcEEeccc
Q 036436 359 ESVGGFVTHCGWNSVLEGV----CAGVPMLAWPL 388 (485)
Q Consensus 359 ~~~~~~I~HgG~gs~~eal----~~GvP~v~~P~ 388 (485)
.++ +|--||=||+.|++ ..++|+-++|.
T Consensus 65 ~d~--vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 65 TDA--LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCE--EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 455 99999999999987 45799999996
No 405
>PRK11519 tyrosine kinase; Provisional
Probab=25.53 E-value=5.4e+02 Score=28.32 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=29.8
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 4 TIVLYTS--PGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 4 ~il~~~~--~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
++++++. |+-|-..-...||..|++.| ++|.++-..
T Consensus 527 kvi~vts~~~geGKTt~a~nLA~~la~~g--~rvLlID~D 564 (719)
T PRK11519 527 NVLMMTGVSPSIGKTFVCANLAAVISQTN--KRVLLIDCD 564 (719)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC
Confidence 4555444 88999999999999999999 999999654
No 406
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=25.43 E-value=63 Score=30.02 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=24.9
Q ss_pred CccEEE-EcCCcc-hhHHHHhhhcCCceEEEecchhH
Q 036436 113 NLKAFV-IDFLCN-PAFQVSSSTLSIPTYYYFTTAGS 147 (485)
Q Consensus 113 ~pD~VI-~D~~~~-~~~~vA~~~lgIP~v~~~~~~~~ 147 (485)
.||+|| .|+..- -+..=| .++|||+|.++-+..-
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA-~~lnIPvIal~DTds~ 153 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREA-SYVNIPVIALCDTDSP 153 (249)
T ss_pred CCCEEEEeCCCcchHHHHHH-HHhCCCEEEEecCCCC
Confidence 788777 566443 466688 9999999999875543
No 407
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=25.37 E-value=2.2e+02 Score=19.22 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHH
Q 036436 420 SSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMR-DGGSSRVALDNLVESF 472 (485)
Q Consensus 420 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~-~~g~~~~~~~~l~~~~ 472 (485)
|.++|.++|.++|.+.+-+.. -.+++++.+.+..+ +-.+.+..+++++...
T Consensus 1 td~~i~~~i~~iL~~~dl~~v--T~k~vr~~Le~~~~~dL~~~K~~I~~~I~~~ 52 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTV--TKKQVREQLEERFGVDLSSRKKFIKELIDEF 52 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG----HHHHHHHHHHH-SS--SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHh--hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 457888999999976652222 23455555554432 1233444666665543
No 408
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=25.33 E-value=5.7e+02 Score=24.00 Aligned_cols=36 Identities=8% Similarity=-0.010 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
|++||+++.+++...-. .+..+|.+.| .+|.++...
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG--~~v~~v~~~ 37 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLG--VEPEYVHIN 37 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCC--CcEEEEeec
Confidence 35699999998887554 5578999999 999888543
No 409
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.28 E-value=1.4e+02 Score=23.94 Aligned_cols=35 Identities=11% Similarity=-0.087 Sum_probs=31.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
+++..+.++..|-....-++..|.++| ++|.+...
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G--~~v~~l~~ 35 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNG--FEVIDLGV 35 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCC--CEEEEcCC
Confidence 367888999999999999999999999 99999854
No 410
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=25.19 E-value=5.4e+02 Score=27.47 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=29.7
Q ss_pred HHHHHhhccCCccEEE----EcCCcchhHHHHhhhcCCceEEEecchhH
Q 036436 103 ETLITISKRSNLKAFV----IDFLCNPAFQVSSSTLSIPTYYYFTTAGS 147 (485)
Q Consensus 103 ~ll~~~~~~~~pD~VI----~D~~~~~~~~vA~~~lgIP~v~~~~~~~~ 147 (485)
..++.....+.+|-+| +|-..+..+..| -++|||.|.+.--+..
T Consensus 101 dsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaa-arlniPsi~v~gGpm~ 148 (615)
T PRK12448 101 DSVEYMVNAHCADAMVCISNCDKITPGMLMAA-LRLNIPVVFVSGGPME 148 (615)
T ss_pred HHHHHHhhCCCcceEEEeccCCCchHHHHHHH-HhcCCCEEEEeCCCcC
Confidence 3334444445899888 676555555566 9999999998765544
No 411
>PRK08617 acetolactate synthase; Reviewed
Probab=25.19 E-value=3.6e+02 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=21.9
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 68 PGVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred CEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 45588887754 7889999999999984
No 412
>PRK06487 glycerate dehydrogenase; Provisional
Probab=25.11 E-value=4e+02 Score=25.84 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=40.3
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.+-.|++|.+. +.+++-++..|.+++..-+.. -+. ...+.+..++|
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~--------------~~~------------~~~~~~l~ell 195 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG--------------RPA------------RPDRLPLDELL 195 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC--------------Ccc------------cccccCHHHHH
Confidence 448899999887 667777777888865432110 000 11356788899
Q ss_pred hccCcceEEeccCch
Q 036436 357 NHESVGGFVTHCGWN 371 (485)
Q Consensus 357 ~~~~~~~~I~HgG~g 371 (485)
+.+++ ++-|+-.+
T Consensus 196 ~~sDi--v~l~lPlt 208 (317)
T PRK06487 196 PQVDA--LTLHCPLT 208 (317)
T ss_pred HhCCE--EEECCCCC
Confidence 99999 88887654
No 413
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=25.10 E-value=3e+02 Score=28.05 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=53.1
Q ss_pred hHHhhh-ccCcceEEeccCc--------------hhhHHhhhcCCcEEeccc-----ccchhHHHHHHHHhhceE-EEEe
Q 036436 352 QVEVLN-HESVGGFVTHCGW--------------NSVLEGVCAGVPMLAWPL-----YAEQKMIKAVVVEEMKVG-LAVT 410 (485)
Q Consensus 352 ~~~lL~-~~~~~~~I~HgG~--------------gs~~eal~~GvP~v~~P~-----~~DQ~~na~~v~~~~G~G-~~l~ 410 (485)
-..++. |++++++|+-.|. -.+.|--.-|+|.|++=- ..+....+..++++.++- +.++
T Consensus 137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~ 216 (492)
T TIGR02836 137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMD 216 (492)
T ss_pred HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEE
Confidence 345666 9999999996662 256666788999998743 333333345665666765 4555
Q ss_pred ccCCCCCccCHHHHHHHHHHHh
Q 036436 411 RSEEGDGLVSSAELEQRVSELM 432 (485)
Q Consensus 411 ~~~~~~~~~~~~~l~~ai~~vl 432 (485)
-.. ++.++|.+.++++|
T Consensus 217 c~~-----l~~~DI~~il~~vL 233 (492)
T TIGR02836 217 VES-----MRESDILSVLEEVL 233 (492)
T ss_pred HHH-----cCHHHHHHHHHHHH
Confidence 555 99999999999986
No 414
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=25.10 E-value=5.4e+02 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
|++||+++. .|.+ ...+++++++.| ++|..+.+
T Consensus 1 ~~kkili~g---~g~~--~~~~~~aa~~lG--~~vv~~~~ 33 (449)
T TIGR00514 1 MLDKILIAN---RGEI--ALRILRACKELG--IKTVAVHS 33 (449)
T ss_pred CcceEEEeC---CCHH--HHHHHHHHHHcC--CeEEEEEC
Confidence 667999883 3433 678888999999 99998854
No 415
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=25.08 E-value=1.5e+02 Score=28.05 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcch
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDD 52 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~ 52 (485)
|+++++.|+. +.|++++.+.|..+++ -+|+|+-..-..+.. .|..
T Consensus 112 ~~llla~G~G--ITP~lSml~~~~~~~~-~~v~l~h~~R~~~~~-af~d 156 (266)
T COG1018 112 KLLLLAGGIG--ITPFLSMLRTLLDRGP-ADVVLVHAARTPADL-AFRD 156 (266)
T ss_pred cEEEEecccc--HhHHHHHHHHHHHhCC-CCEEEEEecCChhhc-chhh
Confidence 5777777664 9999999999999997 778887544333333 4544
No 416
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=25.00 E-value=2.3e+02 Score=21.79 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 16 LNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 16 v~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+.-+.+||..|.+|| .-.+++++...
T Consensus 16 Vm~LqALa~~Le~rG--~~AsCYtC~dG 41 (105)
T PF08844_consen 16 VMSLQALAIVLERRG--YLASCYTCGDG 41 (105)
T ss_pred HHHHHHHHHHHHhCC--ceeEEEecCCC
Confidence 456789999999999 99999998544
No 417
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=24.51 E-value=4.6e+02 Score=26.90 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=26.7
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEc
Q 036436 5 IVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIII 39 (485)
Q Consensus 5 il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~~ 39 (485)
|++... ..-|-..-.+.|++.|+++| ++|..+=
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G--~~V~~fK 35 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRK--LRVQPFK 35 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCC--CceeEEc
Confidence 455544 44788999999999999999 9998883
No 418
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=24.49 E-value=1.2e+02 Score=27.68 Aligned_cols=65 Identities=6% Similarity=0.051 Sum_probs=39.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLP 70 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 70 (485)
.++++++.++ =+.|++++++++.+..++.+|+++......+.. .+...+..+....+++++..+-
T Consensus 103 ~~~lliagG~--Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~~ 167 (231)
T cd06191 103 GRYLLVAAGS--GITPLMAMIRATLQTAPESDFTLIHSARTPADM-IFAQELRELADKPQRLRLLCIF 167 (231)
T ss_pred CcEEEEecCc--cHhHHHHHHHHHHhcCCCCCEEEEEecCCHHHH-hHHHHHHHHHHhCCCeEEEEEE
Confidence 3677777555 488999999999877544778777544332222 3444444443334567665544
No 419
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=24.44 E-value=95 Score=27.78 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=28.3
Q ss_pred cEEEEEcCCCccCHHH-HHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 3 DTIVLYTSPGRGHLNS-MVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P-~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+||++.-.|+. ...- ...|.++|.++| |+|.++.+...
T Consensus 6 k~IllgVTGsi-aa~k~a~~lir~L~k~G--~~V~vv~T~aA 44 (196)
T PRK08305 6 KRIGFGLTGSH-CTYDEVMPEIEKLVDEG--AEVTPIVSYTV 44 (196)
T ss_pred CEEEEEEcCHH-HHHHHHHHHHHHHHhCc--CEEEEEECHhH
Confidence 46666655555 4555 699999999999 99998876533
No 420
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=24.40 E-value=6e+02 Score=26.72 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHhhccCCccEEE----EcCCcchhHHHHhhhcCCceEEEecchhH
Q 036436 105 LITISKRSNLKAFV----IDFLCNPAFQVSSSTLSIPTYYYFTTAGS 147 (485)
Q Consensus 105 l~~~~~~~~pD~VI----~D~~~~~~~~vA~~~lgIP~v~~~~~~~~ 147 (485)
++.....+.+|-+| +|-..+..+..| -++|||.|.+.--+..
T Consensus 81 iE~~~~~~~~Dg~v~l~~CDK~~PG~lMaa-arlniP~i~v~gGpm~ 126 (535)
T TIGR00110 81 VETMVNAHRFDGLVCIPSCDKITPGMLMAA-ARLNIPSIFVTGGPML 126 (535)
T ss_pred HHHHHhcCCcceEEEeccCCCCcHHHHHHH-HhcCCCEEEEeCCCcc
Confidence 33333445899888 676556555566 9999999998765543
No 421
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.37 E-value=6.2e+02 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=25.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 6 VLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 6 l~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
+++...+-|-.|-+..|+.+..++=| |.+++...
T Consensus 77 v~~~t~GPG~~N~l~gia~A~~~~~P---vl~i~G~~ 110 (595)
T PRK09107 77 VVLVTSGPGATNAVTPLQDALMDSIP---LVCITGQV 110 (595)
T ss_pred EEEECCCccHhHHHHHHHHHhhcCCC---EEEEEcCC
Confidence 44556677889999999999998875 66666543
No 422
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=24.33 E-value=1.4e+02 Score=29.08 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=39.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.|+ -+.|++++.+++.++++...|+++-.....+.. .+...++.+....+++.++..
T Consensus 205 ~~ivlIagGt--GiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl-~~~e~l~~~~~~~~~~~~~~~ 268 (339)
T PRK07609 205 KPIVLLASGT--GFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDL-YLSALAEQWAEELPNFRYVPV 268 (339)
T ss_pred CCEEEEecCc--ChhHHHHHHHHHHhcCCCCcEEEEEecCChHHh-ccHHHHHHHHHhCCCeEEEEE
Confidence 3688888665 699999999999988844457766443332222 334444444334456776543
No 423
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=24.25 E-value=1.5e+02 Score=23.81 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=32.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
||++..-++.|-..-...|++.|+++| .+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g--~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKG--KPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCc
Confidence 588899999999999999999999999 9999886543
No 424
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=24.25 E-value=1.9e+02 Score=28.88 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=47.0
Q ss_pred cceEEeccCchhhHHhhhc-----------------CCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHH
Q 036436 361 VGGFVTHCGWNSVLEGVCA-----------------GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAE 423 (485)
Q Consensus 361 ~~~~I~HgG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (485)
.++++|.||..+.+-|+.+ +.|.|.++-.. ++.+.+-. .-+|+|++.-..+ .++.+..+.
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~-~~~~md~~~ 180 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTD-EDGRMDIEA 180 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BB-TTSSB-HHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCC-cchhhhHHH
Confidence 5679999998888777533 24667766544 45665555 5789996554333 156689999
Q ss_pred HHHHHHHHhcC
Q 036436 424 LEQRVSELMDS 434 (485)
Q Consensus 424 l~~ai~~vl~~ 434 (485)
|.++|++..++
T Consensus 181 L~~~l~~~~~~ 191 (373)
T PF00282_consen 181 LEKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHHT
T ss_pred hhhhhcccccc
Confidence 99999887654
No 425
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=24.17 E-value=81 Score=28.99 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=24.6
Q ss_pred EEEEEcCCCccCHHHH------------HHHHHHHHhCCCCeEEEEEc
Q 036436 4 TIVLYTSPGRGHLNSM------------VELGKLILTYHPCFSIDIII 39 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~------------l~La~~L~~rG~~h~Vt~~~ 39 (485)
||++.+.|+.=.+.|. .+||++|.++| ++|+++.
T Consensus 2 ~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G--~~V~li~ 47 (229)
T PRK06732 2 KILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAG--HEVTLVT 47 (229)
T ss_pred EEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCC--CEEEEEE
Confidence 4666666555544442 57899999999 9999985
No 426
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=23.84 E-value=1.5e+02 Score=25.58 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=28.5
Q ss_pred hhHHHHHHHhhccCCccEEEEcCCcc---hhHHHHhhhcCCceEEEec
Q 036436 99 PNLHETLITISKRSNLKAFVIDFLCN---PAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 99 ~~~~~ll~~~~~~~~pD~VI~D~~~~---~~~~vA~~~lgIP~v~~~~ 143 (485)
..+.+++++. +||+|+...... .+..+| .+||.|+++-++
T Consensus 73 ~al~~~i~~~----~p~~Vl~~~t~~g~~la~rlA-a~L~~~~vtdv~ 115 (168)
T cd01715 73 PALVALAKKE----KPSHILAGATSFGKDLAPRVA-AKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHhc----CCCEEEECCCccccchHHHHH-HHhCCCceeeEE
Confidence 3444555554 899999776443 366688 999999998655
No 427
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=23.74 E-value=3.4e+02 Score=24.09 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=33.1
Q ss_pred ecccccchhHHHHHHHHhhceEEEEecc--CC-----CCCccCHHHHH----HHHHHHhcCch
Q 036436 385 AWPLYAEQKMIKAVVVEEMKVGLAVTRS--EE-----GDGLVSSAELE----QRVSELMDSEK 436 (485)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~-----~~~~~~~~~l~----~ai~~vl~~~~ 436 (485)
++|...||...-..+-|.+-+|+.-..- ++ -=..+.++.|+ +.|+++++|+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~ 84 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAG 84 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch
Confidence 3456788888887776777778665431 00 00016666666 67888888886
No 428
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.60 E-value=1.3e+02 Score=29.87 Aligned_cols=91 Identities=19% Similarity=0.126 Sum_probs=53.5
Q ss_pred CCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCc-----hhhHhhhcCCCeEeecccch---HHhhhccCc
Q 036436 290 FSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLP-----EGFLDRTKDRGLVVESWAPQ---VEVLNHESV 361 (485)
Q Consensus 290 ~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp-----~~~~~~~~~~n~~v~~~~p~---~~lL~~~~~ 361 (485)
.+..-+..++++++..+.++.+.+..+.... .....+. .|-..+.+.-.+.+.+|+|| +.+|-.|++
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~-----~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~ 266 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEGRALN-----SLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF 266 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCCccHH-----HHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc
Confidence 4555577888888887777766665431110 0000010 11001111123556689987 459999998
Q ss_pred ceEEeccCchhhHHhhhcCCcEEeccc
Q 036436 362 GGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (485)
Q Consensus 362 ~~~I~HgG~gs~~eal~~GvP~v~~P~ 388 (485)
-+-. |==|..-|.-+|+|.|=-.+
T Consensus 267 --NfVR-GEDSfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 267 --NFVR-GEDSFVRAQWAGKPFVWHIY 290 (374)
T ss_pred --ceEe-cchHHHHHHHhCCCceEecC
Confidence 3333 66799999999999985443
No 429
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.56 E-value=5.3e+02 Score=24.59 Aligned_cols=107 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPPVSRIPDTLR 81 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 81 (485)
++||+++..+....+.-++. +.+-.+-+ ++|..+.++.. ......+.. ++.+..++....
T Consensus 89 ~~ri~vl~Sg~gsnl~al~~-~~~~~~~~--~~i~~visn~~-----~~~~lA~~~-----gIp~~~~~~~~~------- 148 (286)
T PRK06027 89 RKRVVILVSKEDHCLGDLLW-RWRSGELP--VEIAAVISNHD-----DLRSLVERF-----GIPFHHVPVTKE------- 148 (286)
T ss_pred CcEEEEEEcCCCCCHHHHHH-HHHcCCCC--cEEEEEEEcCh-----hHHHHHHHh-----CCCEEEeccCcc-------
Q ss_pred CCCCcHHHHHHHHHhhchhHHHHHHHhhccCCccEEE-EcCCcchhHHHHhhhcCCceEEEecc
Q 036436 82 SPADFPALVYELGELNNPNLHETLITISKRSNLKAFV-IDFLCNPAFQVSSSTLSIPTYYYFTT 144 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~pD~VI-~D~~~~~~~~vA~~~lgIP~v~~~~~ 144 (485)
........+.+.++++ +||+|| +.+.-.....+- +.+.-.++-++++
T Consensus 149 -----------~~~~~~~~~~~~l~~~----~~Dlivlagy~~il~~~~l-~~~~~~iiNiHpS 196 (286)
T PRK06027 149 -----------TKAEAEARLLELIDEY----QPDLVVLARYMQILSPDFV-ARFPGRIINIHHS 196 (286)
T ss_pred -----------ccchhHHHHHHHHHHh----CCCEEEEecchhhcCHHHH-hhccCCceecCcc
No 430
>PRK06932 glycerate dehydrogenase; Provisional
Probab=23.56 E-value=4.3e+02 Score=25.57 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=40.6
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.+..|++|.+. +.+++.++..|.+++. +... -.. .. ...+.+..++|
T Consensus 148 ktvgIiG~G~IG-------~~va~~l~~fg~~V~~-~~~~--------------~~~---------~~-~~~~~~l~ell 195 (314)
T PRK06932 148 STLGVFGKGCLG-------TEVGRLAQALGMKVLY-AEHK--------------GAS---------VC-REGYTPFEEVL 195 (314)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEE-ECCC--------------ccc---------cc-ccccCCHHHHH
Confidence 448899999887 6677777778888654 3211 000 00 11466789999
Q ss_pred hccCcceEEeccCch
Q 036436 357 NHESVGGFVTHCGWN 371 (485)
Q Consensus 357 ~~~~~~~~I~HgG~g 371 (485)
+.+|+ ++-|+-.+
T Consensus 196 ~~sDi--v~l~~Plt 208 (314)
T PRK06932 196 KQADI--VTLHCPLT 208 (314)
T ss_pred HhCCE--EEEcCCCC
Confidence 99999 88887654
No 431
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=23.52 E-value=6.8e+02 Score=25.27 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=31.6
Q ss_pred CCeeeeCCccCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCccCCHHhHHHHHHHH---HhCCCeEEEEE
Q 036436 243 PPLYCIGPVVGRGNGENRGRDRHECLSWLDSKPSRSVLFLCFGSLGSFSSKQLKEMAIGL---ERSGVKFLWVV 313 (485)
Q Consensus 243 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al---~~~~~~~i~~~ 313 (485)
++.++-||--..++. +-.-+....+..+..+|-.+. ....++++++.- ...|++.|+-+
T Consensus 49 ~SmIl~GPPG~GKTT---------lA~liA~~~~~~f~~~sAv~~---gvkdlr~i~e~a~~~~~~gr~tiLfl 110 (436)
T COG2256 49 HSMILWGPPGTGKTT---------LARLIAGTTNAAFEALSAVTS---GVKDLREIIEEARKNRLLGRRTILFL 110 (436)
T ss_pred ceeEEECCCCCCHHH---------HHHHHHHhhCCceEEeccccc---cHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 678888876544332 333333333334777765443 344455544433 33466777766
No 432
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=23.49 E-value=1.4e+02 Score=29.96 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=41.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.|+. +.|++++.+.+.+++++.+|+++-.....+.. .+...++.+....+.+++..+
T Consensus 262 ~~~vlIagGtG--IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~~~~~~~~~ 325 (399)
T PRK13289 262 TPVVLISGGVG--ITPMLSMLETLAAQQPKRPVHFIHAARNGGVH-AFRDEVEALAARHPNLKAHTW 325 (399)
T ss_pred CcEEEEecCcc--HHHHHHHHHHHHhcCCCCCEEEEEEeCChhhc-hHHHHHHHHHHhCCCcEEEEE
Confidence 36888886653 99999999999876644678876444333333 455666555444456665543
No 433
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=23.44 E-value=99 Score=31.56 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=25.6
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
++.+++++. ++|++|.+.. ...+| +++|||++-+
T Consensus 364 ~l~~~i~~~----~~dliig~s~---~k~~A-~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACAA----GADLLITNSH---GRALA-QRLALPLVRA 397 (432)
T ss_pred HHHHHHhhc----CCCEEEECcc---hHHHH-HHcCCCEEEe
Confidence 334555555 9999998863 56789 9999999854
No 434
>PRK09620 hypothetical protein; Provisional
Probab=23.42 E-value=92 Score=28.66 Aligned_cols=36 Identities=0% Similarity=0.015 Sum_probs=26.2
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCCeEEEEEcC
Q 036436 3 DTIVLYTSPGRGHLNSM------------VELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~------------l~La~~L~~rG~~h~Vt~~~~ 40 (485)
++|++.+.|+.=.+.|. ..||++|.++| ++|+++..
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G--a~V~li~g 51 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG--AHVIYLHG 51 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC--CeEEEEeC
Confidence 46777766655443332 67899999999 99999853
No 435
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.37 E-value=4.1e+02 Score=22.78 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccC
Q 036436 290 FSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCG 369 (485)
Q Consensus 290 ~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG 369 (485)
..++.+.++++..+..+..+++...+. ...||. +..-.-...+..-|-- .-+=+|
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~-----------aa~Lpg------------vva~~t~~PVIgvP~~--~~~l~G 91 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG-----------AAHLPG------------MVAALTPLPVIGVPVP--SKALSG 91 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc-----------cchhHH------------HHHhccCCCEEEecCC--ccCCCC
Q ss_pred chhhHHhhh--cCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 036436 370 WNSVLEGVC--AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMDSEKGRAVKERAVA 446 (485)
Q Consensus 370 ~gs~~eal~--~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 446 (485)
..+++..+. .|+| +.-+..|.-.||+.++-+ .-. +...+|.+.++. ||++.++
T Consensus 92 ~daLlS~vqmP~gvp--vatv~I~~~~nAa~~Aaq--------Il~-----~~d~~l~~kl~~---------~r~~~~~ 146 (156)
T TIGR01162 92 LDSLLSIVQMPSGVP--VATVAIGNAGNAALLAAQ--------ILG-----IKDPELAEKLKE---------YRENQKE 146 (156)
T ss_pred HHHHHHHhcCCCCCe--eEEEEcCChhHHHHHHHH--------HHc-----CCCHHHHHHHHH---------HHHHHHH
No 436
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=23.19 E-value=3.9e+02 Score=21.47 Aligned_cols=22 Identities=5% Similarity=-0.097 Sum_probs=15.1
Q ss_pred hhchhHHHHHHHhhccCCccEEEEcC
Q 036436 96 LNNPNLHETLITISKRSNLKAFVIDF 121 (485)
Q Consensus 96 ~~~~~~~~ll~~~~~~~~pD~VI~D~ 121 (485)
...+.+.++++++ +||+|++-.
T Consensus 87 ~~~~~l~~~i~~~----~p~~V~t~~ 108 (128)
T PF02585_consen 87 ELVRDLEDLIREF----RPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHH-----ESEEEEE-
T ss_pred HHHHHHHHHHHHc----CCCEEEECC
Confidence 3456677888888 999999653
No 437
>PRK13057 putative lipid kinase; Reviewed
Probab=23.11 E-value=1.7e+02 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=24.3
Q ss_pred hccCcceEEeccCchhhHHhh----hcCCcEEeccc
Q 036436 357 NHESVGGFVTHCGWNSVLEGV----CAGVPMLAWPL 388 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~~eal----~~GvP~v~~P~ 388 (485)
...++ +|--||=||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 44556 99999999988885 35789999996
No 438
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=23.08 E-value=5.4e+02 Score=24.34 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=23.6
Q ss_pred HHhhhccCcceEEeccCchhhHHhhhcCCcEEeccc
Q 036436 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (485)
Q Consensus 353 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 388 (485)
..+++++++ +|+-==++. .-|+.+|||.+++++
T Consensus 245 ~~~i~~~~~--vI~~RlH~~-I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 245 LGLFASARL--VIGMRLHAL-ILAAAAGVPFVALSY 277 (298)
T ss_pred HHHHhhCCE--EEEechHHH-HHHHHcCCCEEEeec
Confidence 346777887 888544444 457889999998853
No 439
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=22.99 E-value=72 Score=29.72 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=22.8
Q ss_pred cCcceEEeccCchhhHHhhhc----CCcEEeccc
Q 036436 359 ESVGGFVTHCGWNSVLEGVCA----GVPMLAWPL 388 (485)
Q Consensus 359 ~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~ 388 (485)
+++ +|+-||=||++.+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999988654 789888754
No 440
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=22.98 E-value=1.7e+02 Score=25.28 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCcEEEEecCCCccCCHHhHHHHHHHHHhCC
Q 036436 276 SRSVLFLCFGSLGSFSSKQLKEMAIGLERSG 306 (485)
Q Consensus 276 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~ 306 (485)
.+-.|||++||......+.+...++.+...+
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 3448999999987555666777777776643
No 441
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=22.82 E-value=81 Score=30.29 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=63.2
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhhhccCcceEEeccCchhhH
Q 036436 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVL 374 (485)
Q Consensus 295 ~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL~~~~~~~~I~HgG~gs~~ 374 (485)
+..+..+++..+...|... -+..++.+... ....+-+-++++.+.+++++.+|+....+..+.+ -...+.
T Consensus 183 l~pF~~~i~~ag~~~VM~s-y~~id~~pas~-s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~--------~~~~~~ 252 (299)
T PF00933_consen 183 LPPFRAAIKDAGADAVMTS-YPAIDGTPASL-SPKILTDLLRNELGFDGVVISDDLEMGALSSNYS--------IEEAAV 252 (299)
T ss_dssp SHHHHHHHHHTT-SEEEE--STCCTTEEGGG--HHHHCCCCCCCS---SEEEESTTTSHHHHCCTT--------HHHHHH
T ss_pred cccchhcccccccceeeee-ccccCCccchh-hhccchhhCcCcccCCCeEecccchHHHHHhccc--------cchHHH
Confidence 4456666656677666554 33222211100 0011112223444567999999997777543322 345788
Q ss_pred HhhhcCCcEEecccccchh--HHHHHHHHhhceEEEEeccCCCCCccCHHHHHHHHHHHhc
Q 036436 375 EGVCAGVPMLAWPLYAEQK--MIKAVVVEEMKVGLAVTRSEEGDGLVSSAELEQRVSELMD 433 (485)
Q Consensus 375 eal~~GvP~v~~P~~~DQ~--~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ai~~vl~ 433 (485)
.||.+|+=|++++...+.. .....+ .. |.++.++|.+++++||.
T Consensus 253 ~al~AG~D~~l~~~~~~~~~~~l~~av----------~~-----g~i~~~~ld~av~RIl~ 298 (299)
T PF00933_consen 253 RALNAGCDMLLVCNDPDDDIDALVEAV----------ES-----GRISEERLDEAVRRILR 298 (299)
T ss_dssp HHHHHT-SBEESSSSHHHHHHHHHHHH----------HT-----TSSGHHHHHHHHHHHHH
T ss_pred HHHhCccCeeCCCCchhHHHHHHHHHH----------Hc-----CCCCHHHHHHHHHHHhc
Confidence 8999999999999876533 122222 12 33899999999999873
No 442
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=22.63 E-value=1.8e+02 Score=23.48 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=27.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~ 38 (485)
++++.+|..++-.-+..+++.|+++| ..|..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G--~~v~~~ 32 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQG--YAVVAF 32 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCC--CEEEEE
Confidence 46777888888888999999999999 888777
No 443
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.53 E-value=1.1e+02 Score=28.67 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=26.9
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcch----h-HHHHhhhcCCceEEEe
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNP----A-FQVSSSTLSIPTYYYF 142 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~----~-~~vA~~~lgIP~v~~~ 142 (485)
.-.++++++ +.|+||+-...-. . ..+| +.+|||++++.
T Consensus 188 ~n~al~~~~----~i~~lVtK~SG~~Gg~~eKi~AA-~~lgi~vivI~ 230 (256)
T TIGR00715 188 LEKALLREY----RIDAVVTKASGEQGGELEKVKAA-EALGINVIRIA 230 (256)
T ss_pred HHHHHHHHc----CCCEEEEcCCCCccchHHHHHHH-HHcCCcEEEEe
Confidence 345777777 9999997664322 2 2367 99999999863
No 444
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=22.48 E-value=1.6e+02 Score=26.95 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=38.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEE
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQ 68 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 68 (485)
.++++++.++ .+.|++++.+++.+.++..+|+++-.....+.. .+...++.+....++++++.
T Consensus 123 ~~~v~iagG~--Giap~~s~l~~~~~~~~~~~i~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 123 PRLLLIAAGS--GITPVMSMLRTLLARGPTADVVLLYYARTREDV-IFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CCEEEEecCc--cHhHHHHHHHHHHhcCCCCCEEEEEEcCChhhh-HHHHHHHHHHHhCCCeEEEE
Confidence 3678887655 699999999999988543566666444332222 34445555433345566543
No 445
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.47 E-value=1.4e+02 Score=31.51 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=32.3
Q ss_pred CcEEEEEcC-------CCccCHHHHHH---HHHHHHhCCCCeEEEEEcCCCCCC
Q 036436 2 KDTIVLYTS-------PGRGHLNSMVE---LGKLILTYHPCFSIDIIIPTAPFV 45 (485)
Q Consensus 2 ~~~il~~~~-------~~~GHv~P~l~---La~~L~~rG~~h~Vt~~~~~~~~~ 45 (485)
+++++++|. +=-||+.+.++ +||-++.+| ++|.|+|...-+-
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G--~~v~fvtGtDeHG 55 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRG--YEVFFLTGTDEHG 55 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC--CeEEEEeccCCCC
Confidence 356777665 34599998774 899999999 9999998765543
No 446
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.41 E-value=93 Score=32.21 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=24.7
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcchhHHHHhhhcCCceEE
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCNPAFQVSSSTLSIPTYY 140 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~~~~~vA~~~lgIP~v~ 140 (485)
++.+.+++. +||++|.+. ....+| +++|||++.
T Consensus 384 e~~~~i~~~----~pDliig~s---~~~~~a-~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEA----KADIMLSGG---RSQFIA-LKAGMPWLD 416 (475)
T ss_pred HHHHHHhhc----CCCEEEecC---chhhhh-hhcCCCEEE
Confidence 344455555 999999973 466789 999999984
No 447
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=22.37 E-value=4.3e+02 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.3
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 62 ~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~ 94 (539)
T TIGR02418 62 PGVALVTSGPGCSNLVTGLATANSEGDPVVAIG 94 (539)
T ss_pred ceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEe
Confidence 45588988854 7889999999999994
No 448
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=22.31 E-value=1.9e+02 Score=23.34 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccCHHHHH---HHHHHHHhCCCCeEEEEEcCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMV---ELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l---~La~~L~~rG~~h~Vt~~~~~ 41 (485)
|++++++++....|-...++ .|.++-+++| |++.+=+..
T Consensus 1 ~~mkivaVtacp~GiAht~lAAeaL~kAA~~~G--~~i~VE~qg 42 (114)
T PRK10427 1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQLEK--WGVKIETQG 42 (114)
T ss_pred CCceEEEEeeCCCcHHHHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 55679999998888888876 6888889999 999987644
No 449
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.31 E-value=2e+02 Score=24.01 Aligned_cols=37 Identities=19% Similarity=0.021 Sum_probs=34.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
.+|++.+..+.+|-.----++..|.+.| ++|......
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~G--feVi~LG~~ 38 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAG--FNVVNLGVL 38 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCC--CEEEECCCC
Confidence 5899999999999999999999999999 999998544
No 450
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=22.31 E-value=1.4e+02 Score=27.87 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=26.8
Q ss_pred hHHHHHHHhhccCCccEEEEcCCcc---hh-HHHHhhhcCCceEEEe
Q 036436 100 NLHETLITISKRSNLKAFVIDFLCN---PA-FQVSSSTLSIPTYYYF 142 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~~---~~-~~vA~~~lgIP~v~~~ 142 (485)
.-.++++++ +.|+||+-.... .. ..+| +.+|||++++.
T Consensus 181 ~n~aL~~~~----~i~~lVtK~SG~~g~~eKi~AA-~~lgi~vivI~ 222 (248)
T PRK08057 181 LERALLRQH----RIDVVVTKNSGGAGTEAKLEAA-RELGIPVVMIA 222 (248)
T ss_pred HHHHHHHHc----CCCEEEEcCCCchhhHHHHHHH-HHcCCeEEEEe
Confidence 345677777 999999765333 12 2366 99999999873
No 451
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=22.15 E-value=2e+02 Score=24.83 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=31.1
Q ss_pred HHHhhchhHHHHHHHhhccCCccEEEEcCCcch--------------hHH-HHhhhcCCceEEEecc
Q 036436 93 LGELNNPNLHETLITISKRSNLKAFVIDFLCNP--------------AFQ-VSSSTLSIPTYYYFTT 144 (485)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~pD~VI~D~~~~~--------------~~~-vA~~~lgIP~v~~~~~ 144 (485)
.+......+.+++++. +||.++.+..+.. +.. ++ .+.|||+.-+.+.
T Consensus 45 Rl~~I~~~l~~~i~~~----~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~-~~~~ipv~ey~P~ 106 (164)
T PRK00039 45 RLKQIYDGLSELIDEY----QPDEVAIEEVFFNKNPQSALKLGQARGVAILAA-AQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHHh----CCCEEEEehhhhccChHHHHHHHHHHHHHHHHH-HHcCCCEEEECHH
Confidence 3444456788888887 9999987664322 112 45 7889998877543
No 452
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.15 E-value=4.6e+02 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.0
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.++++.|.|-| .+.+|...++|+|++.
T Consensus 85 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 85 VGVALVTSGPGVTNAVTGIATAYMDSIPMVVIS 117 (587)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588888844 6789999999999995
No 453
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.10 E-value=1.2e+02 Score=27.59 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=21.9
Q ss_pred CccEEEEcCCc--chhHHHHhhhcCCceEEEecch
Q 036436 113 NLKAFVIDFLC--NPAFQVSSSTLSIPTYYYFTTA 145 (485)
Q Consensus 113 ~pD~VI~D~~~--~~~~~vA~~~lgIP~v~~~~~~ 145 (485)
+||+||..... ....... ...+||++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~-~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKL-LEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHH-HHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHH-hcccceEEEeeccc
Confidence 99999988765 3344455 67899999987644
No 454
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=22.09 E-value=2e+02 Score=24.87 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
|++-+.++.+-..|-..=+-+|.+.|++|| ++|..+=+.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G--~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARG--YRVATVKHA 39 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCC--cEEEEEEec
Confidence 667788999999999999999999999999 999998554
No 455
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=22.04 E-value=6.5e+02 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=20.7
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
+-|+||+|. ..+..-| -.+|+|++.+
T Consensus 281 ~a~~vitdS--Sggi~EA-~~lg~Pvv~l 306 (365)
T TIGR03568 281 NADAVIGNS--SSGIIEA-PSFGVPTINI 306 (365)
T ss_pred hCCEEEEcC--hhHHHhh-hhcCCCEEee
Confidence 679999994 3455777 8899999975
No 456
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.99 E-value=1.4e+02 Score=27.93 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=27.9
Q ss_pred chhHHHHHHHhhccCCccEEEEcCCcchhH----HHHhhhcCCceEEEe
Q 036436 98 NPNLHETLITISKRSNLKAFVIDFLCNPAF----QVSSSTLSIPTYYYF 142 (485)
Q Consensus 98 ~~~~~~ll~~~~~~~~pD~VI~D~~~~~~~----~vA~~~lgIP~v~~~ 142 (485)
.+.-.++++++ +.|+||+-.....+. .+| +.+|||++++.
T Consensus 183 ~e~n~al~~~~----~i~~lVtK~SG~~g~~eKi~AA-~~lgi~vivI~ 226 (249)
T PF02571_consen 183 KELNRALFRQY----GIDVLVTKESGGSGFDEKIEAA-RELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHHHc----CCCEEEEcCCCchhhHHHHHHH-HHcCCeEEEEe
Confidence 33455777777 999999765432222 266 99999999863
No 457
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=21.96 E-value=3.6e+02 Score=26.31 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=21.7
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEEec
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~ 143 (485)
+-|++|+.. .....+| ..+|+|.|.++.
T Consensus 261 ~a~l~I~nD--TGp~HlA-aA~g~P~valfG 288 (348)
T PRK10916 261 ACKAIVTND--SGLMHVA-AALNRPLVALYG 288 (348)
T ss_pred hCCEEEecC--ChHHHHH-HHhCCCEEEEEC
Confidence 669999874 4456677 789999999864
No 458
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.84 E-value=1.2e+02 Score=29.08 Aligned_cols=37 Identities=8% Similarity=-0.056 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCcc-CHH---HHHHHHHHHHhCCCCeEEEEEc
Q 036436 1 MKDTIVLYTSPGRG-HLN---SMVELGKLILTYHPCFSIDIII 39 (485)
Q Consensus 1 m~~~il~~~~~~~G-Hv~---P~l~La~~L~~rG~~h~Vt~~~ 39 (485)
|+++|++++.+..- |-. -...+.++|.++| |+|..+.
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g--~~v~~i~ 43 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAG--YDAHPID 43 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCC--CEEEEEe
Confidence 56788888843222 222 5588999999999 9999883
No 459
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=21.84 E-value=5.3e+02 Score=26.21 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcC
Q 036436 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (485)
Q Consensus 1 m~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~ 40 (485)
|.+||+++-.+-.| +.+++++++.| ++|..+.+
T Consensus 1 ~~~~ililg~g~~~-----~~~~~~a~~lG--~~~v~~~~ 33 (450)
T PRK06111 1 MFQKVLIANRGEIA-----VRIIRTCQKLG--IRTVAIYS 33 (450)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcC--CeEEEEec
Confidence 66789888766553 77888999999 99998854
No 460
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=21.84 E-value=5.2e+02 Score=25.54 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=61.9
Q ss_pred eEeecccchHH-hhhccCcceEEecc---Cch-hhHHhhhcCCcEEecccccchhHHHHHHHHhhceEEEEeccCCCCCc
Q 036436 344 LVVESWAPQVE-VLNHESVGGFVTHC---GWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEGDGL 418 (485)
Q Consensus 344 ~~v~~~~p~~~-lL~~~~~~~~I~Hg---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (485)
..+.+-.+... +-.++|+ +|+|= |.| .-.|+|+.|-|+|- |+..+. .+|-.-+.
T Consensus 255 asfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l~---d~GYYY~~------- 313 (364)
T PF10933_consen 255 ASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLVH---------NSPLLK---DVGYYYPD------- 313 (364)
T ss_pred eEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCccc---------Ccchhc---ccCcCCCC-------
Confidence 34445445444 3457888 99994 333 56799999999985 777773 57777666
Q ss_pred cCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHH
Q 036436 419 VSSAELEQRVSELMD--SEKGRAVKERAVAMKEAAA 452 (485)
Q Consensus 419 ~~~~~l~~ai~~vl~--~~~~~~~~~~a~~l~~~~~ 452 (485)
+...+=+++|.+++. |...++|+++++++=..+.
T Consensus 314 fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~ 349 (364)
T PF10933_consen 314 FDAFEGARQLLRAIREHDADLDAYRARARRLLDRLS 349 (364)
T ss_pred ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhC
Confidence 567777777777775 4456889999999877765
No 461
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=21.81 E-value=1.9e+02 Score=26.81 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=40.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-CeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHP-CFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~-~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.|+ -+.|++++++.|.+.++ ..+|+++-........ .+...+..+... +++.+..+
T Consensus 99 ~~iv~IA~G~--GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~-~~~~~L~~l~~~-~~~~~~~~ 162 (253)
T cd06221 99 KDLLLVAGGL--GLAPLRSLINYILDNREDYGKVTLLYGARTPEDL-LFKEELKEWAKR-SDVEVILT 162 (253)
T ss_pred CeEEEEcccc--chhHHHHHHHHHHhccccCCcEEEEEecCChHHc-chHHHHHHHHhc-CCeEEEEE
Confidence 4788887774 49999999999987631 2567776544433333 455666665444 56666544
No 462
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.74 E-value=1.7e+02 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.371 Sum_probs=26.0
Q ss_pred cEEEEecCCCccCCHHhHHHHHHHHHhC--CCeEEEEE
Q 036436 278 SVLFLCFGSLGSFSSKQLKEMAIGLERS--GVKFLWVV 313 (485)
Q Consensus 278 ~~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~~i~~~ 313 (485)
.+|+++|||......+.+..+.+.++.. +..+-|.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3899999999864555678888888642 45666665
No 463
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=21.72 E-value=2.7e+02 Score=28.63 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+++..-|+.|-..=++.++..+.++| ..|.+++.+..
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs 133 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES 133 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC
Confidence 56677799999999999999999999 89999976533
No 464
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.63 E-value=1.3e+02 Score=27.81 Aligned_cols=30 Identities=10% Similarity=-0.022 Sum_probs=20.2
Q ss_pred CccEEEEcCCcch--hHH-HHhhhcCCceEEEec
Q 036436 113 NLKAFVIDFLCNP--AFQ-VSSSTLSIPTYYYFT 143 (485)
Q Consensus 113 ~pD~VI~D~~~~~--~~~-vA~~~lgIP~v~~~~ 143 (485)
+||+||....... ... +. +.+|||++.+..
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~-~~~gipvv~~~~ 106 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQ-KKTGIPVVVLDG 106 (262)
T ss_pred CCCEEEEecCCccchhHHHHH-HhhCCCEEEEec
Confidence 9999998754332 122 33 458999988754
No 465
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.61 E-value=3e+02 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=22.4
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEEec
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~ 143 (485)
+-|++|+. ......+| ..+|+|.|.++.
T Consensus 260 ~a~l~Vs~--DSGp~HlA-aA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMA-AALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHH-HHcCCCEEEEEC
Confidence 67999987 44566688 889999999864
No 466
>CHL00067 rps2 ribosomal protein S2
Probab=21.56 E-value=75 Score=29.25 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=26.2
Q ss_pred CCccEEEE-cCCc-chhHHHHhhhcCCceEEEecchhHhH
Q 036436 112 SNLKAFVI-DFLC-NPAFQVSSSTLSIPTYYYFTTAGSVL 149 (485)
Q Consensus 112 ~~pD~VI~-D~~~-~~~~~vA~~~lgIP~v~~~~~~~~~~ 149 (485)
..||+||. |+.. .-+..=| .++|||.|++.-+..-+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea-~~l~IPvIaivDTn~~p~ 198 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALREC-RKLGIPTISILDTNCDPD 198 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHH-HHcCCCEEEEEeCCCCcc
Confidence 46898884 4432 2466688 999999999877665443
No 467
>PLN03139 formate dehydrogenase; Provisional
Probab=21.44 E-value=7.6e+02 Score=24.79 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=41.1
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHHhCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHhh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVL 356 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~lL 356 (485)
+.+-+|++|.+. +.+++.+...|.+++. +... ..+...... .++. ......+++
T Consensus 200 ktVGIVG~G~IG-------~~vA~~L~afG~~V~~-~d~~-------------~~~~~~~~~---~g~~--~~~~l~ell 253 (386)
T PLN03139 200 KTVGTVGAGRIG-------RLLLQRLKPFNCNLLY-HDRL-------------KMDPELEKE---TGAK--FEEDLDAML 253 (386)
T ss_pred CEEEEEeecHHH-------HHHHHHHHHCCCEEEE-ECCC-------------CcchhhHhh---cCce--ecCCHHHHH
Confidence 448899999887 5677777778888644 4221 011111111 1221 123677899
Q ss_pred hccCcceEEeccCchhh
Q 036436 357 NHESVGGFVTHCGWNSV 373 (485)
Q Consensus 357 ~~~~~~~~I~HgG~gs~ 373 (485)
+.+++ ++.|+-.+.-
T Consensus 254 ~~sDv--V~l~lPlt~~ 268 (386)
T PLN03139 254 PKCDV--VVINTPLTEK 268 (386)
T ss_pred hhCCE--EEEeCCCCHH
Confidence 99999 8888765433
No 468
>PRK10818 cell division inhibitor MinD; Provisional
Probab=21.43 E-value=1.5e+02 Score=27.69 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=32.4
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 1 MKDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 1 m~~~il~~~~-~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
|.+.|.+++. |+-|-..-...||..|+++| .+|.++-...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g--~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKG--KKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEECCC
Confidence 5455555554 99999999999999999999 9999985543
No 469
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=21.43 E-value=2e+02 Score=26.23 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=37.2
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhh
Q 036436 4 TIVLYTSP-GRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIAS 56 (485)
Q Consensus 4 ~il~~~~~-~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~ 56 (485)
.|++++=+ -.+...++....++|+++| ++|.++++.+..... .+......
T Consensus 152 ~vvIiSDg~~~~~~~~~~~~l~~l~~r~--~rviwLnP~~~~~~~-~~~~~~~~ 202 (222)
T PF05762_consen 152 TVVIISDGWDTNDPEPLAEELRRLRRRG--RRVIWLNPLPRAGWP-GYDPVARG 202 (222)
T ss_pred EEEEEecccccCChHHHHHHHHHHHHhC--CEEEEECCcccccCC-CCChHHHH
Confidence 46666666 6889999999999999999 999999877554444 44444333
No 470
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.43 E-value=3.3e+02 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=21.8
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEEec
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~ 143 (485)
+-|++|+.. .....+| ..+|+|.|+++.
T Consensus 251 ~a~l~I~~D--SGp~HlA-aA~~~P~i~lfG 278 (334)
T TIGR02195 251 LAKAVVTND--SGLMHVA-AALNRPLVALYG 278 (334)
T ss_pred hCCEEEeeC--CHHHHHH-HHcCCCEEEEEC
Confidence 669999774 4556677 789999998755
No 471
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.36 E-value=3.2e+02 Score=27.81 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=60.0
Q ss_pred hhhccCcceEEeccCch--------------hhHHhhhcCCcEEec-----ccccchhHHHHHHHHhhceEEEEeccCCC
Q 036436 355 VLNHESVGGFVTHCGWN--------------SVLEGVCAGVPMLAW-----PLYAEQKMIKAVVVEEMKVGLAVTRSEEG 415 (485)
Q Consensus 355 lL~~~~~~~~I~HgG~g--------------s~~eal~~GvP~v~~-----P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (485)
|-.|+-.|.+||--|.= ++.|--.-|+|-|++ |...+-...+..++++.++-+..-...+
T Consensus 141 I~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~- 219 (492)
T PF09547_consen 141 ITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQ- 219 (492)
T ss_pred eccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHH-
Confidence 44689999999999863 677778899999986 7778888889999888888766544333
Q ss_pred CCccCHHHHHHHHHHHh
Q 036436 416 DGLVSSAELEQRVSELM 432 (485)
Q Consensus 416 ~~~~~~~~l~~ai~~vl 432 (485)
++.++|.+.++++|
T Consensus 220 ---l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 220 ---LREEDITRILEEVL 233 (492)
T ss_pred ---cCHHHHHHHHHHHH
Confidence 99999999999986
No 472
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.31 E-value=10 Score=20.94 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=13.0
Q ss_pred CchhhHHhhhcCCcEEe
Q 036436 369 GWNSVLEGVCAGVPMLA 385 (485)
Q Consensus 369 G~gs~~eal~~GvP~v~ 385 (485)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888664
No 473
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=21.30 E-value=1.5e+02 Score=26.81 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=38.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.++ =+.|++++.+++.+.++...|+++......+.. .+...+..+....+++++..+
T Consensus 104 ~~~vlIagG~--Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~ 167 (231)
T cd06215 104 DKLLLLSAGS--GITPMMSMARWLLDTRPDADIVFIHSARSPADI-IFADELEELARRHPNFRLHLI 167 (231)
T ss_pred CcEEEEecCc--CcchHHHHHHHHHhcCCCCcEEEEEecCChhhh-hHHHHHHHHHHHCCCeEEEEE
Confidence 3677887655 489999999999988754567766444332222 344444444333345655433
No 474
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.29 E-value=1.1e+02 Score=31.69 Aligned_cols=38 Identities=5% Similarity=0.177 Sum_probs=0.0
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHHhCCCCeEEEEEcCCC
Q 036436 3 DTIVLYTSPGRGHLNSM------------VELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~------------l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
+||++.+.|+.=.+.|. .+||+++..+| ++||+++...
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G--A~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG--AEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC--CcEEEEeCCc
No 475
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=21.27 E-value=1.2e+02 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=21.5
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEEe
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYYF 142 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~ 142 (485)
+||++|.... +..+| +++|||++.+.
T Consensus 350 ~pDl~Ig~s~---~~~~a-~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGTTP---LVQYA-KEKGIPALYYT 375 (416)
T ss_pred CCCEEEeCCh---hhHHH-HHhCCCEEEec
Confidence 9999998843 66689 99999998753
No 476
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.21 E-value=1.7e+02 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=26.0
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEEec
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~~~ 143 (485)
++.+||+|.-...++.-| ++.|||++.+..
T Consensus 29 ~i~~Visd~~~A~~lerA-~~~gIpt~~~~~ 58 (200)
T COG0299 29 EIVAVISDKADAYALERA-AKAGIPTVVLDR 58 (200)
T ss_pred EEEEEEeCCCCCHHHHHH-HHcCCCEEEecc
Confidence 689999999788899999 999999987643
No 477
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.20 E-value=1.1e+02 Score=31.45 Aligned_cols=25 Identities=12% Similarity=0.087 Sum_probs=20.8
Q ss_pred CccEEEEcCCcchhHHHHhhhcCCceEEE
Q 036436 113 NLKAFVIDFLCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 113 ~pD~VI~D~~~~~~~~vA~~~lgIP~v~~ 141 (485)
+||++|... .+..+| +++|||++.+
T Consensus 387 ~pdllig~s---~~~~~A-~~lgip~~~~ 411 (443)
T TIGR01862 387 KPDIIFSGI---KEKFVA-QKLGVPYRQM 411 (443)
T ss_pred CCCEEEEcC---cchhhh-hhcCCCeEec
Confidence 899999876 356788 9999999864
No 478
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=21.16 E-value=1.7e+02 Score=26.29 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q 036436 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (485)
Q Consensus 2 ~~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~ 43 (485)
+.+|.+-..|+-|-.+-|+.=|++|+++| .+|++..-++.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G--~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQG--VDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT----EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCC--CCEEEEEecCC
Confidence 35899999999999999999999999999 99988765433
No 479
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.14 E-value=7.9e+02 Score=26.26 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=22.1
Q ss_pred cceEEeccCch------hhHHhhhcCCcEEecc
Q 036436 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (485)
Q Consensus 361 ~~~~I~HgG~g------s~~eal~~GvP~v~~P 387 (485)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 75 ~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~ 107 (595)
T PRK09107 75 PGVVLVTSGPGATNAVTPLQDALMDSIPLVCIT 107 (595)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEE
Confidence 45588888855 7788999999999984
No 480
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=21.12 E-value=1.7e+02 Score=26.60 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=39.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTY--HPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~r--G~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
.++++++.++ =+.|++++.+++.+. +++.+|+++-.....+.. .+...+..+....+.+.++..
T Consensus 98 ~~illIagG~--GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~ 163 (232)
T cd06190 98 RDIVCIAGGS--GLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDL-CALDELSALVALGARLRVTPA 163 (232)
T ss_pred CcEEEEeeCc--CHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHH-hhHHHHHHHHHhCCCEEEEEE
Confidence 3788888664 489999999999876 323677766444332222 445555555333445665443
No 481
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=21.09 E-value=5.7e+02 Score=24.86 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=40.8
Q ss_pred CcEEEEecCCCccCCHHhHHHHHHHHH-hCCCeEEEEEeCCCCCCccccccccccCchhhHhhhcCCCeEeecccchHHh
Q 036436 277 RSVLFLCFGSLGSFSSKQLKEMAIGLE-RSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV 355 (485)
Q Consensus 277 ~~~V~vs~GS~~~~~~~~~~~i~~al~-~~~~~~i~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n~~v~~~~p~~~l 355 (485)
+.+-.|++|++. +.+++-+. ..|.+++..-+.. ++..... .++ .+.+..++
T Consensus 146 ktvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~---------------~~~~~~~---~~~---~~~~l~el 197 (323)
T PRK15409 146 KTLGIVGMGRIG-------MALAQRAHFGFNMPILYNARRH---------------HKEAEER---FNA---RYCDLDTL 197 (323)
T ss_pred CEEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCC---------------chhhHHh---cCc---EecCHHHH
Confidence 347899999987 55666665 6787765432111 0100000 121 35678899
Q ss_pred hhccCcceEEeccCchh
Q 036436 356 LNHESVGGFVTHCGWNS 372 (485)
Q Consensus 356 L~~~~~~~~I~HgG~gs 372 (485)
|+.+++ ++-|+-.+.
T Consensus 198 l~~sDv--v~lh~plt~ 212 (323)
T PRK15409 198 LQESDF--VCIILPLTD 212 (323)
T ss_pred HHhCCE--EEEeCCCCh
Confidence 999999 888887664
No 482
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=21.01 E-value=1e+02 Score=32.66 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCC-------ccCHHHH-H---HHHHHHHhCCCCeEEEEEcCCCCC
Q 036436 1 MKDTIVLYTSPG-------RGHLNSM-V---ELGKLILTYHPCFSIDIIIPTAPF 44 (485)
Q Consensus 1 m~~~il~~~~~~-------~GHv~P~-l---~La~~L~~rG~~h~Vt~~~~~~~~ 44 (485)
|++++++++.+= -||+... + .+++.++.+| ++|.+++..+.+
T Consensus 1 ~~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G--~~v~~~~g~d~~ 53 (556)
T PRK12268 1 MMMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKG--NEVLFVSGSDEH 53 (556)
T ss_pred CCCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcC--CceEecCcCCCc
Confidence 556666665543 4999876 5 7899999999 999999765443
No 483
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.97 E-value=3.6e+02 Score=23.93 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=43.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC
Q 036436 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLPPP 72 (485)
Q Consensus 5 il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 72 (485)
|+|++.++.-|-.=+..+++.|++.| .+|.+++.....+....++..++... ...+-.|..+|..
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~--I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNN--VSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeCCC
Confidence 88888888888777889999999999 99998877655433323444444442 1223566666653
No 484
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.94 E-value=1.5e+02 Score=27.88 Aligned_cols=38 Identities=8% Similarity=0.193 Sum_probs=23.9
Q ss_pred EEEEecCCCccCCHH-hHHHHHHHHHh--CCCeEEEEEeCC
Q 036436 279 VLFLCFGSLGSFSSK-QLKEMAIGLER--SGVKFLWVVRAP 316 (485)
Q Consensus 279 ~V~vs~GS~~~~~~~-~~~~i~~al~~--~~~~~i~~~~~~ 316 (485)
+|+|||||......+ -+..+.+.++. .+..+.|++.+.
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 799999998854444 67777777776 378899998553
No 485
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.93 E-value=1.4e+02 Score=26.03 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=20.6
Q ss_pred CccEEEEcCCcch-hHHHHhhhcCCceEEEec
Q 036436 113 NLKAFVIDFLCNP-AFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 113 ~pD~VI~D~~~~~-~~~vA~~~lgIP~v~~~~ 143 (485)
+||+||....... ..... ++.|+|++.+..
T Consensus 60 ~PDlii~~~~~~~~~~~~l-~~~gi~v~~~~~ 90 (195)
T cd01143 60 KPDLVIVSSSSLAELLEKL-KDAGIPVVVLPA 90 (195)
T ss_pred CCCEEEEcCCcCHHHHHHH-HHcCCcEEEeCC
Confidence 9999998653332 23355 678999887643
No 486
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=20.90 E-value=1.8e+02 Score=27.72 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=40.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYH-PCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQL 69 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG-~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 69 (485)
+++++++.|+ -+.|++++.+++.+.+ +..+|+++-.....+.. .+...+..+....++++++..
T Consensus 109 ~~~llIAgGt--GIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~-~~~deL~~l~~~~~~~~~~~~ 173 (289)
T PRK08345 109 MDLLLIAGGL--GMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDL-LFYDELIKDLAEAENVKIIQS 173 (289)
T ss_pred ceEEEEeccc--chhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHh-hHHHHHHHHHhcCCCEEEEEE
Confidence 3678887776 5999999999887766 23467766443332222 455555555344566776544
No 487
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=20.80 E-value=6.7e+02 Score=26.69 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=24.0
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 6 VLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 6 l~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
++++..+.|-.|=+..|+.+..++=| |.+++..
T Consensus 79 v~~~t~GPG~~N~l~gl~~A~~~~~P---vl~I~G~ 111 (585)
T CHL00099 79 VCFATSGPGATNLVTGIATAQMDSVP---LLVITGQ 111 (585)
T ss_pred EEEECCCCcHHHHHHHHHHHhhcCCC---EEEEecC
Confidence 34556666888888999999988875 6666543
No 488
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.78 E-value=1.2e+02 Score=28.17 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=21.9
Q ss_pred CCccEEEEcC--CcchhHHHHhhhcCCceEEE
Q 036436 112 SNLKAFVIDF--LCNPAFQVSSSTLSIPTYYY 141 (485)
Q Consensus 112 ~~pD~VI~D~--~~~~~~~vA~~~lgIP~v~~ 141 (485)
.++|+|++-. ..+.|..+| ..+|+|++..
T Consensus 110 ~~~D~Vvtv~~~GI~lA~~lA-~~L~~p~vi~ 140 (238)
T PRK08558 110 LRVDVVLTAATDGIPLAVAIA-SYFGADLVYA 140 (238)
T ss_pred CCCCEEEEECcccHHHHHHHH-HHHCcCEEEE
Confidence 4799999543 345677789 9999999864
No 489
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=20.58 E-value=1.8e+02 Score=26.25 Aligned_cols=65 Identities=6% Similarity=0.153 Sum_probs=39.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcchhhhhccCCCCCeEEEEcC
Q 036436 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATAPSVTFHQLP 70 (485)
Q Consensus 3 ~~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 70 (485)
.++++++.++ =+.|++++.+++.+.++..+|+++-.....+.. .+...++.+....++++++.+.
T Consensus 103 ~~~vlia~Gt--GIaP~~~ll~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~~ 167 (228)
T cd06209 103 RPLLMLAGGT--GLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADL-VELDRLEALAERLPGFSFRTVV 167 (228)
T ss_pred CeEEEEEccc--CHhHHHHHHHHHHhcCCCCcEEEEEecCCHHHh-ccHHHHHHHHHhCCCeEEEEEE
Confidence 3677777553 499999999999887743456666544332222 3445555543344667665544
No 490
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.54 E-value=4.2e+02 Score=25.06 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=20.3
Q ss_pred cCcceEEeccCchhhHHhhhc-----CCcEE-eccc
Q 036436 359 ESVGGFVTHCGWNSVLEGVCA-----GVPML-AWPL 388 (485)
Q Consensus 359 ~~~~~~I~HgG~gs~~eal~~-----GvP~v-~~P~ 388 (485)
+++ +|.-||=||+.|++.. ..|.+ ++|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 455 9999999999996543 34444 4886
No 491
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.31 E-value=9.6e+02 Score=25.32 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=24.1
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCC
Q 036436 6 VLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (485)
Q Consensus 6 l~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~ 41 (485)
+++...+.|-.|=+..|+.+..++=| |.+++..
T Consensus 79 v~~~t~GpG~~N~l~gl~~A~~~~~P---vl~i~G~ 111 (564)
T PRK08155 79 VCMACSGPGATNLVTAIADARLDSIP---LVCITGQ 111 (564)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCC---EEEEecc
Confidence 45556667888888899999887775 7777644
No 492
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.30 E-value=1.4e+02 Score=26.77 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=28.0
Q ss_pred hHHHHHHHhhccCCccEEEEcCCc------chhHHHHhhhcCCceEEEec
Q 036436 100 NLHETLITISKRSNLKAFVIDFLC------NPAFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 100 ~~~~ll~~~~~~~~pD~VI~D~~~------~~~~~vA~~~lgIP~v~~~~ 143 (485)
.+.+++++. +||+|+..... ..+..+| .+||.|+++=++
T Consensus 99 al~~~i~~~----~p~lVL~~~t~~~~~grdlaprlA-arLga~lvsdv~ 143 (202)
T cd01714 99 ALAAAIKKI----GVDLILTGKQSIDGDTGQVGPLLA-ELLGWPQITYVS 143 (202)
T ss_pred HHHHHHHHh----CCCEEEEcCCcccCCcCcHHHHHH-HHhCCCccceEE
Confidence 444555555 89999977655 4577789 999999987544
No 493
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.29 E-value=1.7e+02 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.038 Sum_probs=27.4
Q ss_pred chhHHHHHHHhhccCCccEEEEcCCcch---hHHHHhhhcCCceEEEec
Q 036436 98 NPNLHETLITISKRSNLKAFVIDFLCNP---AFQVSSSTLSIPTYYYFT 143 (485)
Q Consensus 98 ~~~~~~ll~~~~~~~~pD~VI~D~~~~~---~~~vA~~~lgIP~v~~~~ 143 (485)
...+.+++++. +||+|+....... +..+| .+||.|+++-.+
T Consensus 79 a~~l~~~~~~~----~~~lVl~~~t~~g~~la~~lA-~~L~~~~v~~v~ 122 (164)
T PF01012_consen 79 ADALAELIKEE----GPDLVLFGSTSFGRDLAPRLA-ARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHH----T-SEEEEESSHHHHHHHHHHH-HHHT-EEEEEEE
T ss_pred HHHHHHHHHhc----CCCEEEEcCcCCCCcHHHHHH-HHhCCCccceEE
Confidence 34555666665 9999998764432 44588 999999998655
No 494
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.10 E-value=3.7e+02 Score=19.93 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=32.9
Q ss_pred CccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Q 036436 417 GLVSSAELEQRVSELMDSEKGRAVKERAVAMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (485)
Q Consensus 417 ~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (485)
|++.++.+.+.++.+++++ +.+--..+.+.+. +|-+....+..|.+.+...
T Consensus 1 ~~p~~~~i~~i~~~~~~~~----~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 1 DWPPPEVIEEILESCLNGD----FKEARKKLYELLV----EGYSASDILKQLHEVLVES 51 (89)
T ss_dssp TS--HHHHHHHHHHHHHTC----HHHHHHHHHHHHH----TT--HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHh
Confidence 4567888888888888764 6655555555544 4667777888888877765
No 495
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=20.05 E-value=1.5e+02 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=31.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q 036436 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (485)
Q Consensus 4 ~il~~~~~~~GHv~P~l~La~~L~~rG~~h~Vt~~~~~~ 42 (485)
-+++...++.|-..=...++...+++| ..|.|++.+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g--~~~~y~~~e~ 63 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQG--KKVYVITTEN 63 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCC--CEEEEEEcCC
Confidence 366778899999999999988888889 9999997653
Done!