BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036437
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 35.4 bits (80), Expect = 0.057, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 149 YSGAVCSEYRRGGGCSLGDDCEFAHGVFE---CWLHPSRYRTEACK 191
Y +C + G C G+ C+FAHG E HP +Y+TE C+
Sbjct: 4 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHP-KYKTELCR 48
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of Muscleblind-
Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 153 VCSEYRRGGGCSLGD-DCEFAHGVFECWLHPSRYRTEACKD--GKNCKRKVCFFAHSPRQ 209
VC E++R G C+ G+ DC FAH + S C D C R+ C + H P
Sbjct: 22 VCREFQR-GNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAH 80
Query: 210 LR 211
L+
Sbjct: 81 LQ 82
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 149 YSGAVCSEYRRGGGCSLGDDCEFAHGVFECW---LHPSRYRTEACKDGKNCKR----KVC 201
Y +C Y G C G C+FAHG+ E HP +Y+TE C K R C
Sbjct: 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRC 68
Query: 202 FFAHSP 207
F H+P
Sbjct: 69 HFIHNP 74
>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2
Domain
Length = 83
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 153 VCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSPRQL 210
VC E++RG +C+FAH C + R AC D C R+ C + H P L
Sbjct: 11 VCREFQRGTCSRPDTECKFAHPSKSCQVENG--RVIACFDSLKGRCSRENCKYLHPPPHL 68
Query: 211 RILPEI 216
+ EI
Sbjct: 69 KTQLEI 74
>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In
Muscleblind-Like Protein 2
Length = 89
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 153 VCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSPRQL 210
VC +++RG ++C+FAH C + R AC D C R+ C + H P L
Sbjct: 19 VCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHL 76
Query: 211 RILPEI 216
+ EI
Sbjct: 77 KTQLEI 82
>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
Length = 70
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 153 VCSEYRRGGGCSLGD-DCEFAHGVFECWLHPSRYRTEACKD--GKNCKRKVCFFAHSPRQ 209
VC EY+R G C+ G+ DC FAH + + C D C R+ C + H P
Sbjct: 8 VCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAH 66
Query: 210 LR 211
L+
Sbjct: 67 LQ 68
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 161 GGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSP 207
G C+ ++C + HG F C L+ + T C +G + C F+H P
Sbjct: 22 GFCARAENCPYMHGDFPCKLY---HTTGNCINGDD-----CMFSHDP 60
>pdb|2LHN|A Chain A, Rna-Binding Zinc Finger Protein
Length = 80
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 158 RRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPE 215
R G C+ DC F H + E C+ G NCK C F H P R+LPE
Sbjct: 35 REGANCTR-IDCLFGHPI-----------NEDCRFGVNCKNIYCLFRHPPG--RVLPE 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,009,776
Number of Sequences: 62578
Number of extensions: 330240
Number of successful extensions: 713
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 18
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)