Query 036437
Match_columns 431
No_of_seqs 194 out of 494
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 12:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1595 CCCH-type Zn-finger pr 100.0 3.2E-53 7E-58 435.7 19.2 325 61-431 157-521 (528)
2 KOG1677 CCCH-type Zn-finger pr 99.2 1.2E-11 2.7E-16 119.7 5.8 92 124-215 98-209 (332)
3 KOG1677 CCCH-type Zn-finger pr 98.5 9.1E-08 2E-12 93.0 3.6 73 108-180 124-206 (332)
4 COG5063 CTH1 CCCH-type Zn-fing 98.1 1.3E-06 2.8E-11 87.8 3.3 69 148-216 225-307 (351)
5 COG5063 CTH1 CCCH-type Zn-fing 97.8 1.6E-05 3.6E-10 80.0 4.8 107 104-211 216-342 (351)
6 PF00642 zf-CCCH: Zinc finger 97.8 4.6E-06 9.9E-11 55.8 0.2 27 149-175 1-27 (27)
7 KOG1595 CCCH-type Zn-finger pr 97.5 5.1E-05 1.1E-09 80.6 2.2 67 109-183 229-299 (528)
8 smart00356 ZnF_C3H1 zinc finge 97.2 0.00025 5.3E-09 45.8 2.3 25 149-174 2-26 (27)
9 KOG2494 C3H1-type Zn-finger pr 97.0 0.00022 4.8E-09 72.3 1.2 59 152-213 38-99 (331)
10 PF00642 zf-CCCH: Zinc finger 95.6 0.0036 7.9E-08 41.9 0.1 23 185-207 1-27 (27)
11 KOG1040 Polyadenylation factor 94.7 0.026 5.6E-07 57.5 3.4 74 127-216 61-140 (325)
12 KOG1040 Polyadenylation factor 94.3 0.029 6.4E-07 57.1 2.8 79 113-208 74-158 (325)
13 smart00356 ZnF_C3H1 zinc finge 92.5 0.094 2E-06 33.6 2.0 24 184-207 1-27 (27)
14 KOG1492 C3H1-type Zn-finger pr 92.4 0.081 1.8E-06 52.7 2.3 65 122-206 216-282 (377)
15 KOG2494 C3H1-type Zn-finger pr 92.1 0.099 2.1E-06 53.6 2.6 52 121-179 45-97 (331)
16 KOG2333 Uncharacterized conser 91.3 0.1 2.2E-06 56.4 1.8 62 150-213 75-146 (614)
17 COG5084 YTH1 Cleavage and poly 90.8 1.9 4.1E-05 43.7 10.0 88 102-209 98-191 (285)
18 KOG3702 Nuclear polyadenylated 89.9 0.4 8.8E-06 53.1 4.8 88 116-208 544-646 (681)
19 KOG4791 Uncharacterized conser 89.3 0.19 4.1E-06 54.2 1.7 75 124-214 14-91 (667)
20 COG5252 Uncharacterized conser 89.2 0.065 1.4E-06 53.4 -1.7 62 147-209 81-177 (299)
21 PF14608 zf-CCCH_2: Zinc finge 87.7 0.41 8.8E-06 30.1 1.7 16 190-205 2-18 (19)
22 KOG2333 Uncharacterized conser 85.9 0.45 9.7E-06 51.7 2.1 60 115-177 75-142 (614)
23 PF14608 zf-CCCH_2: Zinc finge 85.6 0.58 1.3E-05 29.4 1.7 19 153-174 1-19 (19)
24 KOG1492 C3H1-type Zn-finger pr 83.1 1.6 3.4E-05 43.8 4.3 88 115-215 232-342 (377)
25 COG5152 Uncharacterized conser 82.9 0.52 1.1E-05 46.3 0.9 32 146-177 136-167 (259)
26 KOG2185 Predicted RNA-processi 82.5 0.71 1.5E-05 49.1 1.8 54 117-175 100-163 (486)
27 COG5084 YTH1 Cleavage and poly 82.2 8.2 0.00018 39.3 9.0 62 129-207 91-158 (285)
28 KOG1763 Uncharacterized conser 78.6 0.41 9E-06 49.0 -1.4 34 144-178 85-118 (343)
29 KOG3702 Nuclear polyadenylated 76.7 4 8.7E-05 45.6 5.2 79 116-208 585-666 (681)
30 COG5252 Uncharacterized conser 68.7 0.79 1.7E-05 46.0 -2.1 63 115-177 84-177 (299)
31 KOG1813 Predicted E3 ubiquitin 68.5 1.7 3.7E-05 44.6 0.1 33 146-178 181-213 (313)
32 KOG1763 Uncharacterized conser 67.6 1.9 4.2E-05 44.3 0.3 36 114-150 90-128 (343)
33 KOG0153 Predicted RNA-binding 66.0 3.5 7.7E-05 43.2 1.8 37 139-176 149-185 (377)
34 KOG4791 Uncharacterized conser 45.4 12 0.00027 41.0 1.8 71 81-175 13-84 (667)
35 PF10650 zf-C3H1: Putative zin 31.5 30 0.00065 23.4 1.3 20 153-173 2-21 (23)
36 KOG1039 Predicted E3 ubiquitin 29.9 21 0.00045 37.3 0.5 24 152-176 9-32 (344)
37 KOG2185 Predicted RNA-processi 28.7 28 0.00062 37.6 1.3 41 177-217 130-174 (486)
No 1
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=3.2e-53 Score=435.73 Aligned_cols=325 Identities=44% Similarity=0.713 Sum_probs=213.5
Q ss_pred CCCCCCCCCccccCCchhHHHHHHhcccCCCCCCCCCCCCCCCCCCCeeeeecccccccCCCCCCCCCCCCCCCCccccc
Q 036437 61 GSGSGSDSASYLFYPDQQEMNILHNKFLPFNNTDADSDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKAR 140 (431)
Q Consensus 61 g~g~~~~~~~~~~yp~~~~~~a~l~~~Lp~N~~~~~~~~~~d~y~~DeFrM~~FKTr~Cpr~~cHd~t~CPFAHn~EkdR 140 (431)
++|.++.. +++...+... ..+.+..+.++. +.|.+|+||||.|||++|+|.++|||++|||||++||+|
T Consensus 157 ~~~~~~~e------~~~~~~~~~~--~y~~Dp~~pdi~---~~ys~DeFrMy~fKir~C~R~~shDwteCPf~HpgEkAR 225 (528)
T KOG1595|consen 157 GSGLPDDE------PEVESKLDVT--EYPEDPSWPDIN---GIYSSDEFRMYSFKIRRCSRPRSHDWTECPFAHPGEKAR 225 (528)
T ss_pred ccCccCCC------cccccccccc--cccCCCCccccc---ccccccceEEEeeeecccCCccCCCcccCCccCCCcccc
Confidence 56666655 4433333332 445555554322 799999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCCCCCCCCCCCcCCCccccCCCccccCCC
Q 036437 141 RRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILPEISSQY 220 (431)
Q Consensus 141 RRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~~nC~r~~C~FAHgeeELR~~p~~~~~~ 220 (431)
||+|++|+|+.++||.|++| .|++||.|+||||++|+|+||.+|||++||++++|+|.+|+|||.++|||.++.. +
T Consensus 226 RRDPRkyhYs~tpCPefrkG-~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg~~C~RrvCfFAH~~eqLR~l~~s---~ 301 (528)
T KOG1595|consen 226 RRDPRKYHYSSTPCPEFRKG-SCERGDSCEYAHGVFECWLHPARYRTRKCKDGGYCPRRVCFFAHSPEQLRPLPPS---T 301 (528)
T ss_pred cCCcccccccCccCcccccC-CCCCCCccccccceehhhcCHHHhccccccCCCCCccceEeeecChHHhcccCCC---C
Confidence 99999999999999999998 9999999999999999999999999999999999999999999999999999852 3
Q ss_pred CCCCCCCCcchhhhccccccccccccccCCCCccccCCCCCCCCCCCCCCCCCCccCCCCCCccccCC-------CCCCC
Q 036437 221 SSSPSSVNNNNQKISSHCCMYCHHHSVNSSPTSTLLGNMSHLSRSPSLSPPLSPVKHGLISPISRYSA-------TTPVP 293 (431)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssptstl~~~~~~~~~~ps~sPp~sp~~~~~~~~~~r~~~-------~~~~~ 293 (431)
++..++++. ...+||+...+. +.+.++++ .+||+||...+..+|+...+- .++|.
T Consensus 302 ~s~~~~sp~----------------~s~~sp~~~~~~-~~~~s~~~-~~~p~sp~~~~~~~~~~~~~s~~~~~~~~~~p~ 363 (528)
T KOG1595|consen 302 GSDRPSSPS----------------SSSASPMMASLR-SLPFSPSP-GSPPLSPSANGVSSPIASGGSRSLNSNSPSSPA 363 (528)
T ss_pred CCCCCCCcc----------------cccCCCCccccc-cCCCCCCC-CCCCCCccccccccccccccccccCCCCCCCcc
Confidence 333333210 001133333332 12333322 566677766554333222110 01111
Q ss_pred c-----cccccccc----CccccccHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCC--CCc---eecccC-cc--cc
Q 036437 294 A-----DRLSKFSN----SSEMSMSYKDVLNELMTSMDAISFNEVSSPMSLTPSNDVNA--CPW---IDVSSF-NV--ED 356 (431)
Q Consensus 294 ~-----~~~~~~~~----~~~~~~~y~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~-~~--~~ 356 (431)
+ .+|..... ...+.|.|. +|+|+.++......+++.++.+..+..-+.+ ..| ++.+.- .. +.
T Consensus 364 ~~~~~~Srl~s~~~a~~i~~~~~~~~~-~l~~~f~s~~sssl~~~~~~~~~~~tsP~~~~~~~~~~~~e~s~~~~~~~~~ 442 (528)
T KOG1595|consen 364 APLRSFSRLSSSLSAADISMSSPMNLG-NLSELFSSPDSSSLNPQLQVLSSAPTSPVFTDTASFGSSVESSPAMEGRSQV 442 (528)
T ss_pred ccccccccccccccccccccccccccc-cchhhhcCccccccchhhhhcccCCcCCcCCcccccccccccchhhhccccc
Confidence 1 11100000 112333344 7899999999998888755443322222222 234 333211 11 11
Q ss_pred cc----ceeecCC-CCCC-------CCCCCCCCCccCCCccCCCCccchhHHhhhh----ccccccCCCCceeccCCCCC
Q 036437 357 QQ----QFVLSPS-TPSP-------SAGSIMNPFAAHHDYFSNKSFLDDDQKMINY----HNHIHNNSNGSCQLASDTPD 420 (431)
Q Consensus 357 ~~----qf~~s~s-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 420 (431)
+. ++.|.++ |++- +..++++. ||.++.|.+.|...++.. ....+. +.+++ .+
T Consensus 443 ~~~r~l~~~l~~~~~~s~~~~~~~~~~~~~~~~-----d~g~~~g~~~d~~~~~~~l~~~r~~~s~-~~~~~------~~ 510 (528)
T KOG1595|consen 443 MSSRELRASLKRSSTLSDKPAMNSSGQFSFNNS-----DWGPRAGELLDWGVQSDLLNKLRESTSF-ELGSA------GE 510 (528)
T ss_pred ccchhhhhhhcccccccccccccCccccccccC-----CcCcccCcccchhhhHHHHhhcccCccc-ccCCC------CC
Confidence 11 7888884 4553 22348888 999999999888755443 333323 33433 49
Q ss_pred CCcchhhhhcC
Q 036437 421 PDLGWVNELLT 431 (431)
Q Consensus 421 ~dl~wvn~ll~ 431 (431)
||++|||.||+
T Consensus 511 pd~swv~~ll~ 521 (528)
T KOG1595|consen 511 PDVSWVQSLLK 521 (528)
T ss_pred cCcchhhhhcc
Confidence 99999999985
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.21 E-value=1.2e-11 Score=119.65 Aligned_cols=92 Identities=29% Similarity=0.626 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCccccccCCC-------CCCCccccccccccCCCCCCC-CCCCCCCcCccccc--------cCcccccc
Q 036437 124 SHDWTDCPFAHPSEKARRRDP-------RRYHYSGAVCSEYRRGGGCSL-GDDCEFAHGVFECW--------LHPSRYRT 187 (431)
Q Consensus 124 cHd~t~CPFAHn~EkdRRRdP-------r~~~YKTtLCP~frkGg~Cpr-GdsC~FAHG~~ELr--------yHP~~YKT 187 (431)
+-.+..|+|.|+..+.+.+.. ..-.|++.+|..|++.+.|.+ |++|.|+|+..|++ ..|.+|||
T Consensus 98 ~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt 177 (332)
T KOG1677|consen 98 CGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKT 177 (332)
T ss_pred CCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCC
Confidence 334459999998422222211 124689999999999889999 99999999999998 24669999
Q ss_pred ccCcCC---CCCCC-CCCCcCCCccccCCCcc
Q 036437 188 EACKDG---KNCKR-KVCFFAHSPRQLRILPE 215 (431)
Q Consensus 188 k~Ck~~---~nC~r-~~C~FAHgeeELR~~p~ 215 (431)
++|.+| +.|++ .+|.|+|+..+.+....
T Consensus 178 ~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~ 209 (332)
T KOG1677|consen 178 KLCPKFQKTGLCKYGSRCRFIHGEPEDRASNR 209 (332)
T ss_pred cCCCccccCCCCCCCCcCeecCCCcccccccc
Confidence 999998 58999 58999999999887654
No 3
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.47 E-value=9.1e-08 Score=92.98 Aligned_cols=73 Identities=25% Similarity=0.461 Sum_probs=58.3
Q ss_pred eeeeecccccccCC----CCCCC-CCCCCCCCCcccccc-----CCCCCCCccccccccccCCCCCCCCCCCCCCcCccc
Q 036437 108 HFRMYEFKIRRCTR----SRSHD-WTDCPFAHPSEKARR-----RDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFE 177 (431)
Q Consensus 108 eFrM~~FKTr~Cpr----~~cHd-~t~CPFAHn~EkdRR-----RdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~E 177 (431)
...-..|||.+|.. +.|.+ +.+|.|+|..|+.|. ..-...+|+|++|+.|.+.|.|++|..|.|+|+..|
T Consensus 124 ~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~ 203 (332)
T KOG1677|consen 124 ERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPE 203 (332)
T ss_pred ccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence 33445789999994 57888 999999998655332 222346899999999999779999999999999988
Q ss_pred ccc
Q 036437 178 CWL 180 (431)
Q Consensus 178 Lry 180 (431)
...
T Consensus 204 ~~~ 206 (332)
T KOG1677|consen 204 DRA 206 (332)
T ss_pred ccc
Confidence 774
No 4
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.15 E-value=1.3e-06 Score=87.80 Aligned_cols=69 Identities=30% Similarity=0.582 Sum_probs=58.7
Q ss_pred Cccc--cccccccCCCCCCC---CCCCCCC---cCccccccC--ccccccccCcCC---CCCCC-CCCCcCCCccccCCC
Q 036437 148 HYSG--AVCSEYRRGGGCSL---GDDCEFA---HGVFECWLH--PSRYRTEACKDG---KNCKR-KVCFFAHSPRQLRIL 213 (431)
Q Consensus 148 ~YKT--tLCP~frkGg~Cpr---GdsC~FA---HG~~ELryH--P~~YKTk~Ck~~---~nC~r-~~C~FAHgeeELR~~ 213 (431)
.|++ ++|..|...|.|++ |+.|+|| ||.-|+-.- -..|||++|+.| +.|++ .+|.|+|+.+++..+
T Consensus 225 L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~ 304 (351)
T COG5063 225 LYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEM 304 (351)
T ss_pred hhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhccc
Confidence 4787 89999988779999 9999999 998888654 357999999999 47999 589999999988776
Q ss_pred ccc
Q 036437 214 PEI 216 (431)
Q Consensus 214 p~~ 216 (431)
.+.
T Consensus 305 ~~~ 307 (351)
T COG5063 305 YEE 307 (351)
T ss_pred ccc
Confidence 543
No 5
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.84 E-value=1.6e-05 Score=80.04 Aligned_cols=107 Identities=17% Similarity=0.325 Sum_probs=81.0
Q ss_pred CCCCeeeeecccc--cccCC----CCCCC---CCCCCCC---CCccccccCCCCCCCccccccccccCCCCCCCCCCCCC
Q 036437 104 YASDHFRMYEFKI--RRCTR----SRSHD---WTDCPFA---HPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEF 171 (431)
Q Consensus 104 y~~DeFrM~~FKT--r~Cpr----~~cHd---~t~CPFA---Hn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~F 171 (431)
|...+--+.-||| .+|.- +.|.. |..|.|+ |.. ....-.-....|+|++|-+|.+.|.|++|.+|.|
T Consensus 216 ~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGl-N~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F 294 (351)
T COG5063 216 YQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGL-NELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCF 294 (351)
T ss_pred hhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccc-ccccccccccccccCCccchhhcccCcccccccc
Confidence 3334556778899 89983 56776 7899999 862 4333334456799999999999889999999999
Q ss_pred CcCccccc---cCc-cccccccCcCC---CCCCC-CCCCcCCCccccC
Q 036437 172 AHGVFECW---LHP-SRYRTEACKDG---KNCKR-KVCFFAHSPRQLR 211 (431)
Q Consensus 172 AHG~~ELr---yHP-~~YKTk~Ck~~---~nC~r-~~C~FAHgeeELR 211 (431)
+||..|.. -|+ ..|+...|+.+ +.|+. ..|.|-|.+.-+.
T Consensus 295 ~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~ 342 (351)
T COG5063 295 KHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLD 342 (351)
T ss_pred ccCChhhccccccccccccccccccccccCccCCCCchhhccccchhh
Confidence 99986654 354 47999999975 57987 5688888766543
No 6
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.81 E-value=4.6e-06 Score=55.82 Aligned_cols=27 Identities=44% Similarity=1.058 Sum_probs=21.6
Q ss_pred ccccccccccCCCCCCCCCCCCCCcCc
Q 036437 149 YSGAVCSEYRRGGGCSLGDDCEFAHGV 175 (431)
Q Consensus 149 YKTtLCP~frkGg~CprGdsC~FAHG~ 175 (431)
|++++|+.|.+.+.|++|++|.|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 688999999997799999999999973
No 7
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.47 E-value=5.1e-05 Score=80.61 Aligned_cols=67 Identities=25% Similarity=0.448 Sum_probs=55.3
Q ss_pred eeeecccccccC---CCCCCCCCCCCCCCCc-cccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCcc
Q 036437 109 FRMYEFKIRRCT---RSRSHDWTDCPFAHPS-EKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPS 183 (431)
Q Consensus 109 FrM~~FKTr~Cp---r~~cHd~t~CPFAHn~-EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~ 183 (431)
=|-|.|.-..|| ++.|..|+.|.|||.. |-|. -|. .|+|++|++- +.|+| .-|.|||..+||+.++.
T Consensus 229 PRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwL--HPa--~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~~ 299 (528)
T KOG1595|consen 229 PRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWL--HPA--RYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLPP 299 (528)
T ss_pred cccccccCccCcccccCCCCCCCccccccceehhhc--CHH--HhccccccCC---CCCcc-ceEeeecChHHhcccCC
Confidence 356899999999 4789999999999985 4443 233 6999999986 48999 99999999999998764
No 8
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.21 E-value=0.00025 Score=45.76 Aligned_cols=25 Identities=44% Similarity=1.076 Sum_probs=22.2
Q ss_pred ccccccccccCCCCCCCCCCCCCCcC
Q 036437 149 YSGAVCSEYRRGGGCSLGDDCEFAHG 174 (431)
Q Consensus 149 YKTtLCP~frkGg~CprGdsC~FAHG 174 (431)
|++.+|+.|+.| .|++|++|.|.|.
T Consensus 2 ~k~~~C~~~~~g-~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFFKRG-YCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCccCC-CCCCCCCcCCCCc
Confidence 678899999656 9999999999997
No 9
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.03 E-value=0.00022 Score=72.26 Aligned_cols=59 Identities=39% Similarity=0.702 Sum_probs=39.3
Q ss_pred cccccccCCCCCCCCCC-CCCCcCccccccCccccccccCcCC--CCCCCCCCCcCCCccccCCC
Q 036437 152 AVCSEYRRGGGCSLGDD-CEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSPRQLRIL 213 (431)
Q Consensus 152 tLCP~frkGg~CprGds-C~FAHG~~ELryHP~~YKTk~Ck~~--~nC~r~~C~FAHgeeELR~~ 213 (431)
+.|++|.++ .|.|||. |+|+|=-. -.+-..-+-..|.++ +.|.|..|.|+|.+.+++--
T Consensus 38 eVCReF~rn-~C~R~d~~CkfaHP~~--~~~V~~g~v~aC~Ds~kgrCsR~nCkylHpp~hlkdq 99 (331)
T KOG2494|consen 38 EVCREFLRN-TCSRGDRECKFAHPPK--NCQVSNGRVIACFDSQKGRCSRENCKYLHPPQHLKDQ 99 (331)
T ss_pred HHHHHHHhc-cccCCCccccccCCCC--CCCccCCeEEEEeccccCccCcccceecCCChhhhhh
Confidence 578888777 7888877 88887644 222233444567776 36877778888887776543
No 10
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=95.55 E-value=0.0036 Score=41.88 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=17.3
Q ss_pred cccccCcCC---CCCCC-CCCCcCCCc
Q 036437 185 YRTEACKDG---KNCKR-KVCFFAHSP 207 (431)
Q Consensus 185 YKTk~Ck~~---~nC~r-~~C~FAHge 207 (431)
|||.+|+.| +.|++ ..|.|+|++
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 799999987 58999 589999984
No 11
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=94.70 E-value=0.026 Score=57.54 Aligned_cols=74 Identities=27% Similarity=0.494 Sum_probs=45.4
Q ss_pred CCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCC---CCCCC-CCCC
Q 036437 127 WTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG---KNCKR-KVCF 202 (431)
Q Consensus 127 ~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~---~nC~r-~~C~ 202 (431)
+..|+.-|+. ++ ...+...|..|..| .|..||.|.|.|-. + +-|-..|..| +.|.+ ..|.
T Consensus 61 ~~~~~~~~~~----~~----~~~~~~vcK~~l~g-lC~kgD~C~Flhe~-~------~~k~rec~ff~~~g~c~~~~~c~ 124 (325)
T KOG1040|consen 61 GPICPKSHND----VS----DSRGKVVCKHWLRG-LCKKGDQCEFLHEY-D------LTKMRECKFFSLFGECTNGKDCP 124 (325)
T ss_pred CCCCccccCC----cc----ccCCceeehhhhhh-hhhccCcCcchhhh-h------hcccccccccccccccccccCCc
Confidence 4667777763 11 23456788888887 88888888888863 2 2233346554 46776 5677
Q ss_pred cCCCc--cccCCCccc
Q 036437 203 FAHSP--RQLRILPEI 216 (431)
Q Consensus 203 FAHge--eELR~~p~~ 216 (431)
|.|+. ..+...+.|
T Consensus 125 y~h~dpqt~~k~c~~~ 140 (325)
T KOG1040|consen 125 YLHGDPQTAIKKCKWY 140 (325)
T ss_pred ccCCChhhhhhccchh
Confidence 77776 344433433
No 12
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=94.34 E-value=0.029 Score=57.12 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=54.2
Q ss_pred cccccccCC---CCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCcccccccc
Q 036437 113 EFKIRRCTR---SRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEA 189 (431)
Q Consensus 113 ~FKTr~Cpr---~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~ 189 (431)
.+++..|.. +.|..++.|.|.|-. +..+- ..|.+|...+.|.+|..|.|-|+..| -+-+.
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~--~~~k~--------rec~ff~~~g~c~~~~~c~y~h~dpq-------t~~k~ 136 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY--DLTKM--------RECKFFSLFGECTNGKDCPYLHGDPQ-------TAIKK 136 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh--hhccc--------ccccccccccccccccCCcccCCChh-------hhhhc
Confidence 447777874 578889999999964 22222 25667777669999999999999752 23344
Q ss_pred CcCC--CCCCC-CCCCcCCCcc
Q 036437 190 CKDG--KNCKR-KVCFFAHSPR 208 (431)
Q Consensus 190 Ck~~--~nC~r-~~C~FAHgee 208 (431)
|+.+ +.|+. ..|.+.|-..
T Consensus 137 c~~~~~g~c~~g~~c~~~h~~~ 158 (325)
T KOG1040|consen 137 CKWYKEGFCRGGPSCKKRHERK 158 (325)
T ss_pred cchhhhccCCCcchhhhhhhcc
Confidence 5544 35665 4677777665
No 13
>smart00356 ZnF_C3H1 zinc finger.
Probab=92.51 E-value=0.094 Score=33.64 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=19.7
Q ss_pred ccccccCcCC--CCCCC-CCCCcCCCc
Q 036437 184 RYRTEACKDG--KNCKR-KVCFFAHSP 207 (431)
Q Consensus 184 ~YKTk~Ck~~--~nC~r-~~C~FAHge 207 (431)
.||+.+|+.| +.|++ ..|.|.|..
T Consensus 1 ~~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 1 KYKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 3789999987 47998 579999974
No 14
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=92.37 E-value=0.081 Score=52.68 Aligned_cols=65 Identities=25% Similarity=0.630 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCC--CCCCCC
Q 036437 122 SRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG--KNCKRK 199 (431)
Q Consensus 122 ~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~--~nC~r~ 199 (431)
+-|-.+..|-|.|... +-++||.|..| .|...+.|...|... | .+--.|+.| +.|.++
T Consensus 216 gicgkgaacrfvhept------------rkticpkflng-rcnkaedcnlsheld-----p--rripacryfllgkcnnp 275 (377)
T KOG1492|consen 216 GICGKGAACRFVHEPT------------RKTICPKFLNG-RCNKAEDCNLSHELD-----P--RRIPACRYFLLGKCNNP 275 (377)
T ss_pred CcccCCceeeeecccc------------ccccChHHhcC-ccCchhcCCcccccC-----c--cccchhhhhhhccCCCC
Confidence 4567789999999531 13699999999 999999999999743 2 234468877 689999
Q ss_pred CCCcCCC
Q 036437 200 VCFFAHS 206 (431)
Q Consensus 200 ~C~FAHg 206 (431)
.|+|.|-
T Consensus 276 ncryvhi 282 (377)
T KOG1492|consen 276 NCRYVHI 282 (377)
T ss_pred CceEEEE
Confidence 9999885
No 15
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=92.11 E-value=0.099 Score=53.60 Aligned_cols=52 Identities=23% Similarity=0.450 Sum_probs=38.6
Q ss_pred CCCCCCCCC-CCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccc
Q 036437 121 RSRSHDWTD-CPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECW 179 (431)
Q Consensus 121 r~~cHd~t~-CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELr 179 (431)
|+.|..+++ |.|||+.+ .+...+-+-..|=++.+| +|.|- +|+|.|...++.
T Consensus 45 rn~C~R~d~~CkfaHP~~-----~~~V~~g~v~aC~Ds~kg-rCsR~-nCkylHpp~hlk 97 (331)
T KOG2494|consen 45 RNTCSRGDRECKFAHPPK-----NCQVSNGRVIACFDSQKG-RCSRE-NCKYLHPPQHLK 97 (331)
T ss_pred hccccCCCccccccCCCC-----CCCccCCeEEEEeccccC-ccCcc-cceecCCChhhh
Confidence 445555666 99999963 444444556799999999 99864 599999987764
No 16
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=91.32 E-value=0.1 Score=56.36 Aligned_cols=62 Identities=26% Similarity=0.498 Sum_probs=43.6
Q ss_pred cccccccccCC--CCCCCCCCCCCCcCccccccC--ccccccccCcCC---CCCCCCC-CCcC--CCccccCCC
Q 036437 150 SGAVCSEYRRG--GGCSLGDDCEFAHGVFECWLH--PSRYRTEACKDG---KNCKRKV-CFFA--HSPRQLRIL 213 (431)
Q Consensus 150 KTtLCP~frkG--g~CprGdsC~FAHG~~ELryH--P~~YKTk~Ck~~---~nC~r~~-C~FA--HgeeELR~~ 213 (431)
.-.+||....| ..|++|++|.|.|.+.-.+.. |++= -.|.-+ +.|++++ |+|+ |-..+-+..
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig--~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~~ 146 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG--PSCPVFESLGFCPYGFKCRFLGAHLDIEGNNL 146 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC--CccceeeccccCCccceeehhhcccCccccch
Confidence 46799999887 789999999999997554432 2221 336654 5899964 9995 665555543
No 17
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=90.82 E-value=1.9 Score=43.70 Aligned_cols=88 Identities=25% Similarity=0.486 Sum_probs=58.3
Q ss_pred CCCCCCeeeeecccccccCCCCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccC
Q 036437 102 DPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLH 181 (431)
Q Consensus 102 d~y~~DeFrM~~FKTr~Cpr~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryH 181 (431)
+++..-...+.+|....|+. ...|.|.|.. ++|+. .+..|..|-.-+.|..|..|.|.|..
T Consensus 98 ~~~~~s~V~c~~~~~g~c~s-----~~~c~~lh~~--d~~~s------~~~~c~~Fs~~G~cs~g~~c~~~h~d------ 158 (285)
T COG5084 98 NPVLSSSVVCKFFLRGLCKS-----GFSCEFLHEY--DLRSS------QGPPCRSFSLKGSCSSGPSCGYSHID------ 158 (285)
T ss_pred CccccCCcccchhccccCcC-----CCccccccCC--Ccccc------cCCCcccccccceeccCCCCCccccC------
Confidence 33433355566666666665 5899999974 34442 35689999554499999999999996
Q ss_pred ccccccccCcCC-----CCCCC-CCCCcCCCccc
Q 036437 182 PSRYRTEACKDG-----KNCKR-KVCFFAHSPRQ 209 (431)
Q Consensus 182 P~~YKTk~Ck~~-----~nC~r-~~C~FAHgeeE 209 (431)
|+ -+-..|+.+ .-|+. ..|.|-|+..-
T Consensus 159 p~-~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~ 191 (285)
T COG5084 159 PD-SFAGNCDQYSGATYGFCPLGASCKFSHTLKR 191 (285)
T ss_pred cc-cccccccccCcccccccCCCCcccccccccc
Confidence 32 122335543 35887 47999999763
No 18
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=89.93 E-value=0.4 Score=53.06 Aligned_cols=88 Identities=26% Similarity=0.576 Sum_probs=49.6
Q ss_pred ccccCCCCCCCCCCCCCCCCcccc--ccCCCC-----CCCccccccccccCCCCCCCCCCCCCCcCcccc--ccC--ccc
Q 036437 116 IRRCTRSRSHDWTDCPFAHPSEKA--RRRDPR-----RYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFEC--WLH--PSR 184 (431)
Q Consensus 116 Tr~Cpr~~cHd~t~CPFAHn~Ekd--RRRdPr-----~~~YKTtLCP~frkGg~CprGdsC~FAHG~~EL--ryH--P~~ 184 (431)
+.+|.++..-....|-|+|+. -. .---|. ...|.-..|.. +..|. ...|.|.|+..-+ ++. |..
T Consensus 544 l~~Cky~~~Ct~a~Ce~~HPt-aa~~~~s~p~k~fa~~~~ks~p~Ck~---~~kCt-asDC~~sH~~~~~pvq~t~ip~~ 618 (681)
T KOG3702|consen 544 LTRCKYGPACTSAECEFAHPT-AAENAKSLPNKKFASKCLKSHPGCKF---GKKCT-ASDCNYSHAGRRIPVQPTRIPPP 618 (681)
T ss_pred eccccCCCcCCchhhhhcCCc-chhhhhccccccccccceeccccccc---ccccc-cccCcccccCCCCCCccccCCCC
Confidence 447777644448899999984 11 001121 11222222322 12343 3468899986442 221 222
Q ss_pred cc----cccCcCCCCCCCCCCCcCCCcc
Q 036437 185 YR----TEACKDGKNCKRKVCFFAHSPR 208 (431)
Q Consensus 185 YK----Tk~Ck~~~nC~r~~C~FAHgee 208 (431)
+. +.+|+++.+|++..|.|.|...
T Consensus 619 ~~~~ti~~~CrY~pnCrnm~C~F~HPk~ 646 (681)
T KOG3702|consen 619 FPGGTIRGLCRYRPNCRNMQCKFYHPKT 646 (681)
T ss_pred CCCCCccccceeccCcCCccccccCCcc
Confidence 22 5678888899999999999754
No 19
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=0.19 Score=54.23 Aligned_cols=75 Identities=24% Similarity=0.474 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCC--C-CCCCCC
Q 036437 124 SHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG--K-NCKRKV 200 (431)
Q Consensus 124 cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~--~-nC~r~~ 200 (431)
|..++.|+|-|+ |.+ |- --+-|..|..+-.|.. .|.|-|+.+-+. ..-.+|.++ + .|....
T Consensus 14 cKk~d~c~~rh~-E~a-l~-------n~t~C~~w~~~~~C~k--~C~YRHSe~~~k-----r~e~~CYwe~~p~gC~k~~ 77 (667)
T KOG4791|consen 14 CKKGDSCPFRHC-EAA-LG-------NETVCTLWQEGRCCRK--VCRYRHSEIDKK-----RSEIPCYWENQPTGCQKLN 77 (667)
T ss_pred hhccCcCcchhh-HHH-hc-------CcchhhhhhhcCcccc--cccchhhHHhhh-----cCcccceeecCCCccCCCc
Confidence 455799999998 554 22 2358999999877855 899999976554 456789876 2 499999
Q ss_pred CCcCCCccccCCCc
Q 036437 201 CFFAHSPRQLRILP 214 (431)
Q Consensus 201 C~FAHgeeELR~~p 214 (431)
|-|-|..-.|..+.
T Consensus 78 CgfRH~~pPLkg~l 91 (667)
T KOG4791|consen 78 CGFRHNRPPLKGVL 91 (667)
T ss_pred cccccCCCchhhhc
Confidence 99999765555443
No 20
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=89.19 E-value=0.065 Score=53.41 Aligned_cols=62 Identities=29% Similarity=0.531 Sum_probs=45.8
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCccccccC--ccc-------------------cccccCcCC-------C----
Q 036437 147 YHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLH--PSR-------------------YRTEACKDG-------K---- 194 (431)
Q Consensus 147 ~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryH--P~~-------------------YKTk~Ck~~-------~---- 194 (431)
..-++..|-.|..+ .|..|+.|.|+|+..|.+-. |++ --.+.|+++ .
T Consensus 81 vdpK~~vcalF~~~-~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~ 159 (299)
T COG5252 81 VDPKTVVCALFLNK-TCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG 159 (299)
T ss_pred cCchhHHHHHhccC-ccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence 45678899999988 99999999999998776531 222 233457653 1
Q ss_pred -CCCCC--CCCcCCCccc
Q 036437 195 -NCKRK--VCFFAHSPRQ 209 (431)
Q Consensus 195 -nC~r~--~C~FAHgeeE 209 (431)
.|+++ .|-|.|..-+
T Consensus 160 W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 160 WTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eeCCCCCceeeeeeccCc
Confidence 59985 7999998655
No 21
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=87.65 E-value=0.41 Score=30.14 Aligned_cols=16 Identities=50% Similarity=1.049 Sum_probs=9.0
Q ss_pred CcCCCCCCCC-CCCcCC
Q 036437 190 CKDGKNCKRK-VCFFAH 205 (431)
Q Consensus 190 Ck~~~nC~r~-~C~FAH 205 (431)
|+.|.+|+++ .|.|+|
T Consensus 2 Ck~~~~C~~~~~C~f~H 18 (19)
T PF14608_consen 2 CKFGPNCTNGDNCPFSH 18 (19)
T ss_pred CcCcCCCCCCCcCccCC
Confidence 5555556554 566655
No 22
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=85.91 E-value=0.45 Score=51.67 Aligned_cols=60 Identities=27% Similarity=0.455 Sum_probs=44.4
Q ss_pred cccccCC------CCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCC--cCccc
Q 036437 115 KIRRCTR------SRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFA--HGVFE 177 (431)
Q Consensus 115 KTr~Cpr------~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FA--HG~~E 177 (431)
+.++||. ..|..+.+|-|-|..+.-.-..+.. ..-.||.|...|.||+|-+|.|+ |-..|
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~D---ig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~ 142 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPD---IGPSCPVFESLGFCPYGFKCRFLGAHLDIE 142 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcc---cCCccceeeccccCCccceeehhhcccCcc
Confidence 7889995 2577889999999875433333332 34689999998899999999996 54443
No 23
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=85.62 E-value=0.58 Score=29.43 Aligned_cols=19 Identities=37% Similarity=0.849 Sum_probs=14.2
Q ss_pred ccccccCCCCCCCCCCCCCCcC
Q 036437 153 VCSEYRRGGGCSLGDDCEFAHG 174 (431)
Q Consensus 153 LCP~frkGg~CprGdsC~FAHG 174 (431)
+|+.+. .|++|++|.|.|-
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 366443 5999999999983
No 24
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=83.09 E-value=1.6 Score=43.80 Aligned_cols=88 Identities=22% Similarity=0.492 Sum_probs=52.3
Q ss_pred cccccCC---CCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCc---cccccc
Q 036437 115 KIRRCTR---SRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHP---SRYRTE 188 (431)
Q Consensus 115 KTr~Cpr---~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP---~~YKTk 188 (431)
+...||+ ++|..-..|...|. -+.||-| .|+.|.-| +|. .-+|.|.|--.-.. -| ..-|-.
T Consensus 232 rkticpkflngrcnkaedcnlshe--ldprrip--------acryfllg-kcn-npncryvhihysen-apicfefakyg 298 (377)
T KOG1492|consen 232 RKTICPKFLNGRCNKAEDCNLSHE--LDPRRIP--------ACRYFLLG-KCN-NPNCRYVHIHYSEN-APICFEFAKYG 298 (377)
T ss_pred ccccChHHhcCccCchhcCCcccc--cCccccc--------hhhhhhhc-cCC-CCCceEEEEeecCC-Cceeeeehhcc
Confidence 4457986 68888899999995 5567766 45556555 563 44566655321000 01 111222
Q ss_pred c--------------CcCC---CCCCCCCCCcCCCccccCCCcc
Q 036437 189 A--------------CKDG---KNCKRKVCFFAHSPRQLRILPE 215 (431)
Q Consensus 189 ~--------------Ck~~---~nC~r~~C~FAHgeeELR~~p~ 215 (431)
+ |.++ +.|.++.|...|+.-..-.+.+
T Consensus 299 fcelgtscknqhilqctdyamfgscnnpqcslyhgavsadvpeq 342 (377)
T KOG1492|consen 299 FCELGTSCKNQHILQCTDYAMFGSCNNPQCSLYHGAVSADVPEQ 342 (377)
T ss_pred eeccccccccceeeeecchhhhcCCCCCcceeecceeccCCccc
Confidence 2 4433 5788899999999765554443
No 25
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=82.90 E-value=0.52 Score=46.26 Aligned_cols=32 Identities=31% Similarity=0.733 Sum_probs=28.6
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCcCccc
Q 036437 146 RYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFE 177 (431)
Q Consensus 146 ~~~YKTtLCP~frkGg~CprGdsC~FAHG~~E 177 (431)
..-|.+..|..|+..|.|-+||.|.|.|.+..
T Consensus 136 viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 136 VIDTQPDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred eeecCcccccchhhcccccCCchhhhhhhhhh
Confidence 45688999999999889999999999999863
No 26
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=82.49 E-value=0.71 Score=49.09 Aligned_cols=54 Identities=31% Similarity=0.723 Sum_probs=37.0
Q ss_pred cccCCCCCCCCCCCCCCCCc-----cc-cccC----CCCCCCccccccccccCCCCCCCCCCCCCCcCc
Q 036437 117 RRCTRSRSHDWTDCPFAHPS-----EK-ARRR----DPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGV 175 (431)
Q Consensus 117 r~Cpr~~cHd~t~CPFAHn~-----Ek-dRRR----dPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~ 175 (431)
..|...+-+.|- -||||. |. +|-| .|. .-...+|++|..| .|.+|.+|.|.||.
T Consensus 100 sKcsaph~ss~g--l~yHna~I~g~E~sarvRVlfl~PT--h~sMkpC~ffLeg-~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 100 SKCSAPHTSSRG--LYYHNARIIGFEGSARVRVLFLTPT--HESMKPCKFFLEG-RCRFGENCRFSHGL 163 (486)
T ss_pred CcccccccCCcc--ceecceeEEeeccccceEEEeecCc--chhhccchHhhcc-ccccCcccccccCc
Confidence 356666666665 678883 22 2222 121 2345699999999 99999999999997
No 27
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=82.22 E-value=8.2 Score=39.25 Aligned_cols=62 Identities=27% Similarity=0.482 Sum_probs=49.0
Q ss_pred CCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccc--cccCcCC---CCCCC-CCCC
Q 036437 129 DCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYR--TEACKDG---KNCKR-KVCF 202 (431)
Q Consensus 129 ~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YK--Tk~Ck~~---~nC~r-~~C~ 202 (431)
.|++-|- +- . .+....|+.|..| .|+.|..|.|.|+.. +-+ +-.|+.| +.|.. ..|.
T Consensus 91 s~~~~~~--~~-----~--~~s~V~c~~~~~g-~c~s~~~c~~lh~~d-------~~~s~~~~c~~Fs~~G~cs~g~~c~ 153 (285)
T COG5084 91 STPNNHV--NP-----V--LSSSVVCKFFLRG-LCKSGFSCEFLHEYD-------LRSSQGPPCRSFSLKGSCSSGPSCG 153 (285)
T ss_pred cCCcccc--Cc-----c--ccCCcccchhccc-cCcCCCccccccCCC-------cccccCCCcccccccceeccCCCCC
Confidence 6777773 21 1 4778899999999 999999999999953 233 6678887 58998 6899
Q ss_pred cCCCc
Q 036437 203 FAHSP 207 (431)
Q Consensus 203 FAHge 207 (431)
+.|..
T Consensus 154 ~~h~d 158 (285)
T COG5084 154 YSHID 158 (285)
T ss_pred ccccC
Confidence 99996
No 28
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=78.64 E-value=0.41 Score=49.02 Aligned_cols=34 Identities=29% Similarity=0.757 Sum_probs=23.3
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCcCcccc
Q 036437 144 PRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFEC 178 (431)
Q Consensus 144 Pr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~EL 178 (431)
|...--++.+|-+|..| .|..|+.|.|+|...+.
T Consensus 85 ~~gvDPKSvvCafFk~g-~C~KG~kCKFsHdl~~~ 118 (343)
T KOG1763|consen 85 PKGVDPKSVVCAFFKQG-TCTKGDKCKFSHDLAVE 118 (343)
T ss_pred ccCCCchHHHHHHHhcc-CCCCCCcccccchHHHh
Confidence 33344566778887777 78888888888876443
No 29
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=76.66 E-value=4 Score=45.62 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=54.4
Q ss_pred ccccCCCCCCCCCCCCCCCCccccccCCCCCCCccccccccccC--CCCCCCCCCCCCCcCccccccCccccccccCcCC
Q 036437 116 IRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRR--GGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG 193 (431)
Q Consensus 116 Tr~Cpr~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frk--Gg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~ 193 (431)
...|..+..---..|+|.|.+ ||.|-. |++..|+.--. .+.|.++-+|.-- .=.+||| +.|+++
T Consensus 585 ~p~Ck~~~kCtasDC~~sH~~----~~~pvq--~t~ip~~~~~~ti~~~CrY~pnCrnm---~C~F~HP-----k~cRf~ 650 (681)
T KOG3702|consen 585 HPGCKFGKKCTASDCNYSHAG----RRIPVQ--PTRIPPPFPGGTIRGLCRYRPNCRNM---QCKFYHP-----KTCRFN 650 (681)
T ss_pred ccccccccccccccCcccccC----CCCCCc--cccCCCCCCCCCccccceeccCcCCc---cccccCC-----cccccc
Confidence 345555544455889999974 566654 77778876521 2589888888632 2235677 579999
Q ss_pred CCCCC-CCCCcCCCcc
Q 036437 194 KNCKR-KVCFFAHSPR 208 (431)
Q Consensus 194 ~nC~r-~~C~FAHgee 208 (431)
.+|++ ..|.|+|-.-
T Consensus 651 ~~c~~~~sc~fYh~r~ 666 (681)
T KOG3702|consen 651 TNCPNNPSCTFYHERP 666 (681)
T ss_pred ccCCCCcccccccCCc
Confidence 99994 7899999744
No 30
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=68.73 E-value=0.79 Score=45.99 Aligned_cols=63 Identities=29% Similarity=0.558 Sum_probs=41.8
Q ss_pred cccccCC---CCCCCCCCCCCCCCccccccC-CCCCCC-----------------ccccccccccC----C-----CCCC
Q 036437 115 KIRRCTR---SRSHDWTDCPFAHPSEKARRR-DPRRYH-----------------YSGAVCSEYRR----G-----GGCS 164 (431)
Q Consensus 115 KTr~Cpr---~~cHd~t~CPFAHn~EkdRRR-dPr~~~-----------------YKTtLCP~frk----G-----g~Cp 164 (431)
|+..|.. ..|..++.|.|+|.-|..||- .|..|. -.-..|.+|.. | ..||
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CP 163 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCP 163 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCC
Confidence 6777774 467788999999986554332 121110 02237888764 2 6899
Q ss_pred CC-CCCCCCcCccc
Q 036437 165 LG-DDCEFAHGVFE 177 (431)
Q Consensus 165 rG-dsC~FAHG~~E 177 (431)
.| +.|.|-|...+
T Consensus 164 ng~~~C~y~H~Lp~ 177 (299)
T COG5252 164 NGNMRCSYIHKLPD 177 (299)
T ss_pred CCCceeeeeeccCc
Confidence 87 79999999876
No 31
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.48 E-value=1.7 Score=44.55 Aligned_cols=33 Identities=33% Similarity=0.868 Sum_probs=29.1
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCcCcccc
Q 036437 146 RYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFEC 178 (431)
Q Consensus 146 ~~~YKTtLCP~frkGg~CprGdsC~FAHG~~EL 178 (431)
+.-|.+.+|.+|+..|.|-+|++|.|.|.+...
T Consensus 181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 356899999999998899999999999998744
No 32
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=67.59 E-value=1.9 Score=44.35 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=27.3
Q ss_pred ccccccCC---CCCCCCCCCCCCCCccccccCCCCCCCcc
Q 036437 114 FKIRRCTR---SRSHDWTDCPFAHPSEKARRRDPRRYHYS 150 (431)
Q Consensus 114 FKTr~Cpr---~~cHd~t~CPFAHn~EkdRRRdPr~~~YK 150 (431)
=|+..|.. +.|..++.|.|+|. ....|+.+.+-.|.
T Consensus 90 PKSvvCafFk~g~C~KG~kCKFsHd-l~~~~k~eK~dly~ 128 (343)
T KOG1763|consen 90 PKSVVCAFFKQGTCTKGDKCKFSHD-LAVERKKEKIDLYP 128 (343)
T ss_pred chHHHHHHHhccCCCCCCcccccch-HHHhhhccchhccc
Confidence 36678885 67999999999998 46678877665453
No 33
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=66.05 E-value=3.5 Score=43.18 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=30.9
Q ss_pred cccCCCCCCCccccccccccCCCCCCCCCCCCCCcCcc
Q 036437 139 ARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVF 176 (431)
Q Consensus 139 dRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ 176 (431)
..||.|..-.-.+..|..|.+| .|+||+.|.|-|-..
T Consensus 149 l~rt~p~ykrn~p~Icsf~v~g-eckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 149 LQRTTPYYKRNRPHICSFFVKG-ECKRGAECPYRHEKP 185 (377)
T ss_pred HhccCccccCCCCccccceeec-cccccccccccccCC
Confidence 3467776555678899999999 999999999999875
No 34
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.42 E-value=12 Score=41.01 Aligned_cols=71 Identities=23% Similarity=0.434 Sum_probs=46.1
Q ss_pred HHHHhcccCCCCCCCC-CCCCCCCCCCCeeeeecccccccCCCCCCCCCCCCCCCCccccccCCCCCCCccccccccccC
Q 036437 81 NILHNKFLPFNNTDAD-SDPDSDPYASDHFRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRR 159 (431)
Q Consensus 81 ~a~l~~~Lp~N~~~~~-~~~~~d~y~~DeFrM~~FKTr~Cpr~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frk 159 (431)
.+-++.-|++-+-+.. ..++.-.||. -.+|-+ +.|+|-|+ |-++.|.| .+|=.|.+
T Consensus 13 ~cKk~d~c~~rh~E~al~n~t~C~~w~---------~~~~C~------k~C~YRHS-e~~~kr~e-------~~CYwe~~ 69 (667)
T KOG4791|consen 13 TCKKGDSCPFRHCEAALGNETVCTLWQ---------EGRCCR------KVCRYRHS-EIDKKRSE-------IPCYWENQ 69 (667)
T ss_pred hhhccCcCcchhhHHHhcCcchhhhhh---------hcCccc------ccccchhh-HHhhhcCc-------ccceeecC
Confidence 5566666776665543 2233333322 223333 49999998 66666654 48989999
Q ss_pred CCCCCCCCCCCCCcCc
Q 036437 160 GGGCSLGDDCEFAHGV 175 (431)
Q Consensus 160 Gg~CprGdsC~FAHG~ 175 (431)
+.+|. .++|.|-|..
T Consensus 70 p~gC~-k~~CgfRH~~ 84 (667)
T KOG4791|consen 70 PTGCQ-KLNCGFRHNR 84 (667)
T ss_pred CCccC-CCccccccCC
Confidence 87895 7899999965
No 35
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=31.48 E-value=30 Score=23.35 Aligned_cols=20 Identities=45% Similarity=1.002 Sum_probs=14.2
Q ss_pred ccccccCCCCCCCCCCCCCCc
Q 036437 153 VCSEYRRGGGCSLGDDCEFAH 173 (431)
Q Consensus 153 LCP~frkGg~CprGdsC~FAH 173 (431)
+|+.-..|+.|. -+.|.|-|
T Consensus 2 lC~yEl~Gg~Cn-d~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCN-DPDCEFQH 21 (23)
T ss_pred CCccccCCCeeC-CCCCCccc
Confidence 677777777784 55687777
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.92 E-value=21 Score=37.26 Aligned_cols=24 Identities=33% Similarity=0.998 Sum_probs=23.0
Q ss_pred cccccccCCCCCCCCCCCCCCcCcc
Q 036437 152 AVCSEYRRGGGCSLGDDCEFAHGVF 176 (431)
Q Consensus 152 tLCP~frkGg~CprGdsC~FAHG~~ 176 (431)
++|..+.+| .|.+|+.|.|.|...
T Consensus 9 tic~~~~~g-~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKG-NCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccc-cccccceeeeeccCc
Confidence 799999999 999999999999987
No 37
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=28.74 E-value=28 Score=37.56 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=29.3
Q ss_pred ccccCccccccccCcCC--CCCCC-CCCCcCCCcc-ccCCCcccc
Q 036437 177 ECWLHPSRYRTEACKDG--KNCKR-KVCFFAHSPR-QLRILPEIS 217 (431)
Q Consensus 177 ELryHP~~YKTk~Ck~~--~nC~r-~~C~FAHgee-ELR~~p~~~ 217 (431)
=++.||+----++|++| +.|+. ..|+|.||.. +|-.+..|+
T Consensus 130 Vlfl~PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~yq 174 (486)
T KOG2185|consen 130 VLFLTPTHESMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNYQ 174 (486)
T ss_pred EEeecCcchhhccchHhhccccccCcccccccCcccchhhcccCC
Confidence 34568888888899988 68998 5799999964 343333343
Done!