Query 036437
Match_columns 431
No_of_seqs 194 out of 494
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 21:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.3 5.5E-13 1.9E-17 103.9 3.3 62 147-209 8-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.1 3.7E-11 1.2E-15 93.6 2.4 64 113-177 9-76 (77)
3 3d2q_A Muscleblind-like protei 98.9 4.4E-10 1.5E-14 87.9 1.3 62 150-212 5-69 (70)
4 2d9n_A Cleavage and polyadenyl 98.6 3E-08 1E-12 78.6 4.4 63 144-214 3-68 (77)
5 2e5s_A Otthump00000018578; ZF- 98.4 2.1E-08 7.3E-13 83.7 -1.0 62 150-212 19-83 (98)
6 2cqe_A KIAA1064 protein; CCCH 98.3 2.7E-07 9.1E-12 76.8 3.9 48 148-208 10-61 (98)
7 2d9m_A Zinc finger CCCH-type d 98.3 7.7E-08 2.6E-12 76.9 0.6 50 140-193 12-64 (69)
8 2rhk_C Cleavage and polyadenyl 98.3 1.7E-07 5.7E-12 74.1 1.9 55 149-211 14-71 (72)
9 2cqe_A KIAA1064 protein; CCCH 97.9 4E-06 1.4E-10 69.7 3.3 49 113-176 10-61 (98)
10 2d9n_A Cleavage and polyadenyl 97.9 4.3E-06 1.5E-10 66.2 3.3 63 113-193 7-72 (77)
11 3d2q_A Muscleblind-like protei 97.8 9.9E-06 3.4E-10 63.2 2.4 60 115-179 5-68 (70)
12 3d2n_A Muscleblind-like protei 97.7 1E-05 3.4E-10 65.9 2.3 61 149-212 7-70 (83)
13 2rpp_A Muscleblind-like protei 97.5 3E-05 1E-09 64.0 2.2 60 150-212 16-78 (89)
14 2e5s_A Otthump00000018578; ZF- 97.3 3.5E-05 1.2E-09 64.3 0.3 60 115-179 19-82 (98)
15 2rhk_C Cleavage and polyadenyl 97.1 0.00012 4.2E-09 57.7 1.6 55 113-178 13-70 (72)
16 2d9m_A Zinc finger CCCH-type d 96.7 0.00023 8E-09 56.9 -0.1 30 185-214 18-50 (69)
17 3d2n_A Muscleblind-like protei 96.4 0.0016 5.4E-08 53.0 2.8 59 114-179 7-69 (83)
18 2lhn_A Nuclear polyadenylated 94.8 0.0016 5.5E-08 53.1 0.0 64 117-209 10-74 (80)
19 2rpp_A Muscleblind-like protei 95.3 0.0047 1.6E-07 51.0 1.3 57 115-178 16-76 (89)
20 2lhn_A Nuclear polyadenylated 91.4 0.027 9.1E-07 46.0 0.0 42 151-206 9-50 (80)
21 2fc6_A Nuclear, target of EGR1 82.3 0.37 1.3E-05 36.6 0.8 27 149-175 18-44 (50)
22 3u1l_A PRE-mRNA-splicing facto 81.6 0.37 1.2E-05 45.5 0.7 25 151-176 70-94 (240)
23 3u9g_A Zinc finger CCCH-type a 58.1 6.7 0.00023 37.5 3.4 42 150-207 150-197 (229)
24 3v33_A Ribonuclease ZC3H12A; r 48.4 4.1 0.00014 38.6 0.3 35 137-174 178-212 (223)
25 2fc6_A Nuclear, target of EGR1 43.7 7.8 0.00027 29.4 1.1 24 185-208 18-45 (50)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.32 E-value=5.5e-13 Score=103.94 Aligned_cols=62 Identities=37% Similarity=0.862 Sum_probs=30.2
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCcccccc---CccccccccCcCC---CCCCC-CCCCcCCCccc
Q 036437 147 YHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWL---HPSRYRTEACKDG---KNCKR-KVCFFAHSPRQ 209 (431)
Q Consensus 147 ~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELry---HP~~YKTk~Ck~~---~nC~r-~~C~FAHgeeE 209 (431)
.+|++++|+.|.+.+.|++|++|.|+|+..|++. || .|||++|+.| +.|++ ..|.|+|+..|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3689999999975559999999999999999985 44 7999999865 58998 68999999876
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.07 E-value=3.7e-11 Score=93.60 Aligned_cols=64 Identities=28% Similarity=0.622 Sum_probs=24.2
Q ss_pred cccccccCC----CCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccc
Q 036437 113 EFKIRRCTR----SRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFE 177 (431)
Q Consensus 113 ~FKTr~Cpr----~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~E 177 (431)
.|||++|+. +.|..+..|.|+|..+ +.|..+..-.|++.+|+.|...|.|++|++|.|+|+..|
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~-e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLG-ELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSC-CGGGTC---------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCCh-hhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 679999994 5689999999999864 455444444689999998886669999999999999876
No 3
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.86 E-value=4.4e-10 Score=87.91 Aligned_cols=62 Identities=34% Similarity=0.738 Sum_probs=56.3
Q ss_pred cccccccccCCCCCCCCC-CCCCCcCccccccCccccccccCcCC--CCCCCCCCCcCCCccccCC
Q 036437 150 SGAVCSEYRRGGGCSLGD-DCEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSPRQLRI 212 (431)
Q Consensus 150 KTtLCP~frkGg~CprGd-sC~FAHG~~ELryHP~~YKTk~Ck~~--~nC~r~~C~FAHgeeELR~ 212 (431)
+.+.|++|.+| .|.+|+ .|.|+|...|.+..+..+++..|.+| ++|.++.|.|.|.+.+|+.
T Consensus 5 k~~vC~~f~~G-~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 5 RLEVCREYQRG-NCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEEBCHHHHTT-CCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred cchhCHHHhcC-CCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 45689999888 999999 59999999999988899999999997 6899999999999998864
No 4
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3e-08 Score=78.64 Aligned_cols=63 Identities=29% Similarity=0.484 Sum_probs=51.3
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCC---CCCCCCCCCcCCCccccCCCc
Q 036437 144 PRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG---KNCKRKVCFFAHSPRQLRILP 214 (431)
Q Consensus 144 Pr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~---~nC~r~~C~FAHgeeELR~~p 214 (431)
|....+++.+|+.|.+| .|.+|++|.|+|...+. |+.+|+.| +.|.+..|.|+|...+.+..+
T Consensus 3 p~~~~~k~~~C~~fl~G-~C~~G~~C~fsH~~~~~-------~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~ 68 (77)
T 2d9n_A 3 SGSSGEKTVVCKHWLRG-LCKKGDQCEFLHEYDMT-------KMPECYFYSKFGECSNKECPFLHIDPESKIKD 68 (77)
T ss_dssp CCCSCCTTSBCHHHHTT-CCSCTTSSSSBCSCCTT-------TSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSS
T ss_pred CCCCCCcceeCHhHccC-cCCCCCCCCCccccccC-------cCCCCcccCCCCccCCCCeeccCCCccccCCC
Confidence 44456789999999997 99999999999997642 56789987 689988999999987665443
No 5
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.1e-08 Score=83.67 Aligned_cols=62 Identities=34% Similarity=0.725 Sum_probs=55.8
Q ss_pred cccccccccCCCCCCCCC-CCCCCcCccccccCccccccccCcCC--CCCCCCCCCcCCCccccCC
Q 036437 150 SGAVCSEYRRGGGCSLGD-DCEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSPRQLRI 212 (431)
Q Consensus 150 KTtLCP~frkGg~CprGd-sC~FAHG~~ELryHP~~YKTk~Ck~~--~nC~r~~C~FAHgeeELR~ 212 (431)
+.+.|++|.+| .|.+|+ .|.|+|...+++..+...++..|.+| ++|.++.|+|.|...+|+.
T Consensus 19 k~~VCr~FlrG-~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 19 KLEVCREFQRG-NCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp EEEBCSHHHHT-CCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhhHHHhcC-cCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 56799999997 999999 79999999888777778999999998 7999999999999887754
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.34 E-value=2.7e-07 Score=76.76 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=42.1
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCC---CCCCC-CCCCcCCCcc
Q 036437 148 HYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG---KNCKR-KVCFFAHSPR 208 (431)
Q Consensus 148 ~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~---~nC~r-~~C~FAHgee 208 (431)
.+++.+|+.|.+| .|.+|++|.|+|. +.+|+.| ++|++ ..|.|+|...
T Consensus 10 ~~k~~lC~~f~~G-~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYITG-FCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTTTT-CCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCcccccC-cCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 3688999999877 9999999999999 7789976 68998 6899999864
No 7
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=7.7e-08 Score=76.91 Aligned_cols=50 Identities=28% Similarity=0.537 Sum_probs=40.6
Q ss_pred ccCCCCCCCccccccccccCCCCCCCCCCCCCCcCcccccc---CccccccccCcCC
Q 036437 140 RRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWL---HPSRYRTEACKDG 193 (431)
Q Consensus 140 RRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELry---HP~~YKTk~Ck~~ 193 (431)
.-|.|.. ++++|..|.+| .|++|++|.||||..||+- .+..+|+++++..
T Consensus 12 ~~R~P~~---k~~LC~~~~~G-~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar 64 (69)
T 2d9m_A 12 QHRFPTG---YFSICDRYMNG-TCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS 64 (69)
T ss_dssp CCCCCCS---CCSBCHHHHHS-CCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred cccCCCC---CcccCcccCcC-CCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence 3354542 34999999777 9999999999999999986 5778999998854
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.31 E-value=1.7e-07 Score=74.08 Aligned_cols=55 Identities=31% Similarity=0.567 Sum_probs=45.5
Q ss_pred ccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCC---CCCCCCCCCcCCCccccC
Q 036437 149 YSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG---KNCKRKVCFFAHSPRQLR 211 (431)
Q Consensus 149 YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~---~nC~r~~C~FAHgeeELR 211 (431)
+++.+|+.|.+| .|.+|++|.|+|.... -++.+|+.| +.|.+..|+|.|...+.|
T Consensus 14 ~k~~vCk~fl~G-~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 14 EKTVVCKHWLRG-LCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCSBCHHHHTT-CCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CcCeeCHHHhcC-CCCCCCCCCCcccccc-------ccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 567899999997 9999999999999642 367889985 689999999999976654
No 9
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.95 E-value=4e-06 Score=69.68 Aligned_cols=49 Identities=31% Similarity=0.624 Sum_probs=40.8
Q ss_pred cccccccCC---CCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCcc
Q 036437 113 EFKIRRCTR---SRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVF 176 (431)
Q Consensus 113 ~FKTr~Cpr---~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ 176 (431)
.+|+..|.. +.|..+..|+|+|. +.+|+.|...+.|++|+.|.|+|...
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 368888885 57888999999996 46899996444999999999999853
No 10
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=4.3e-06 Score=66.23 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=48.7
Q ss_pred cccccccCC---CCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCcccccccc
Q 036437 113 EFKIRRCTR---SRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEA 189 (431)
Q Consensus 113 ~FKTr~Cpr---~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~ 189 (431)
..|+..|.. +.|..+..|+|+|.. .. + +..+|..|.+.+.|. |+.|.|.|...+ -++..
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~-~~-~--------~~~~C~~f~~~G~C~-~~~C~f~H~~~~-------~~~~~ 68 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEY-DM-T--------KMPECYFYSKFGECS-NKECPFLHIDPE-------SKIKD 68 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSC-CT-T--------TSCBCHHHHHTCCCC-CSSCSSBCCCTT-------SSCSS
T ss_pred CCcceeCHhHccCcCCCCCCCCCcccc-cc-C--------cCCCCcccCCCCccC-CCCeeccCCCcc-------ccCCC
Confidence 358888974 788999999999974 22 1 245899999934999 999999999754 36778
Q ss_pred CcCC
Q 036437 190 CKDG 193 (431)
Q Consensus 190 Ck~~ 193 (431)
|.+|
T Consensus 69 C~~f 72 (77)
T 2d9n_A 69 CPWS 72 (77)
T ss_dssp SSCC
T ss_pred Cccc
Confidence 8766
No 11
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.75 E-value=9.9e-06 Score=63.22 Aligned_cols=60 Identities=28% Similarity=0.614 Sum_probs=43.7
Q ss_pred cccccC---CCCCCCCC-CCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccc
Q 036437 115 KIRRCT---RSRSHDWT-DCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECW 179 (431)
Q Consensus 115 KTr~Cp---r~~cHd~t-~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELr 179 (431)
|+..|. +|.|..+. .|+|+|..+.. +-.+ ..+++..|.+|.+| .|.+| +|.|.|...+|+
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~-~~~~--~~~~~~vC~~flkG-~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADST-MIDT--NDNTVTVCMDYIKG-RCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTS-CCBT--TTTEEEBCHHHHTT-CCCCT-TCCSBCCCHHHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccc-cccc--cCCcceeccccCcC-CCCCC-CcCeeCCHHHHh
Confidence 444554 36677777 69999985321 1111 23578899999998 99999 999999988775
No 12
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.74 E-value=1e-05 Score=65.92 Aligned_cols=61 Identities=38% Similarity=0.786 Sum_probs=48.7
Q ss_pred ccccccccccCCCCCCCCC-CCCCCcCccccccCccccccccCcCC--CCCCCCCCCcCCCccccCC
Q 036437 149 YSGAVCSEYRRGGGCSLGD-DCEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSPRQLRI 212 (431)
Q Consensus 149 YKTtLCP~frkGg~CprGd-sC~FAHG~~ELryHP~~YKTk~Ck~~--~nC~r~~C~FAHgeeELR~ 212 (431)
.+-..|++|.+| .|.+|+ .|.|+|-...+..- .-+...|.+| ++|.++.|.|.|.+..|..
T Consensus 7 ~~~~VCr~FlrG-~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 7 LTLEVCREFQRG-TCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLKT 70 (83)
T ss_dssp GEEEBCTTGGGT-CCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHHH
T ss_pred ccchhcHHHhcC-CCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHHH
Confidence 355789999997 999997 99999997643221 3567789987 6899999999999877653
No 13
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.52 E-value=3e-05 Score=64.01 Aligned_cols=60 Identities=37% Similarity=0.799 Sum_probs=48.1
Q ss_pred cccccccccCCCCCCCCC-CCCCCcCccccccCccccccccCcCC--CCCCCCCCCcCCCccccCC
Q 036437 150 SGAVCSEYRRGGGCSLGD-DCEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSPRQLRI 212 (431)
Q Consensus 150 KTtLCP~frkGg~CprGd-sC~FAHG~~ELryHP~~YKTk~Ck~~--~nC~r~~C~FAHgeeELR~ 212 (431)
+-+.|++|.+| .|.+|+ .|.|+|-...+..- .-+...|.+| ++|.+..|.|.|.+..|..
T Consensus 16 ~~~VCrdFlrG-~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 16 TLEVCRQFQRG-TCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLKT 78 (89)
T ss_dssp EECBCHHHHHT-CCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhchHHhcC-CCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHHH
Confidence 45689999997 999998 99999987643222 3467789988 6899999999999876643
No 14
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=3.5e-05 Score=64.25 Aligned_cols=60 Identities=27% Similarity=0.569 Sum_probs=46.1
Q ss_pred cccccCC---CCCCCCC-CCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccc
Q 036437 115 KIRRCTR---SRSHDWT-DCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECW 179 (431)
Q Consensus 115 KTr~Cpr---~~cHd~t-~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELr 179 (431)
|++.|.. +.|..++ .|+|+|..+.. +.++. ..+...|.+|.+| .|.+| +|.|.|...++.
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~-~~~~~--~~~~~vC~~flkG-~C~r~-~C~y~H~~~~l~ 82 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADST-MIDTS--DNTVTVCMDYIKG-RCMRE-KCKYFHPPAHLQ 82 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCC-SCCTT--TCEEEBCHHHHHT-CCCCT-TCCSBCCCHHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhc-ccccc--CCccccchhhccC-CCCCC-CcCccCChHHHH
Confidence 6677773 6787787 79999986432 22222 3577899999998 99999 999999988765
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.14 E-value=0.00012 Score=57.66 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=42.5
Q ss_pred cccccccC---CCCCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCcccc
Q 036437 113 EFKIRRCT---RSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFEC 178 (431)
Q Consensus 113 ~FKTr~Cp---r~~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~EL 178 (431)
..|+..|. +|.|..+..|+|+|... . + +..+|..|.+.+.|.+ +.|.|.|...+.
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~-~-~--------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYD-M-T--------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCC-T-T--------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccccc-c-c--------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 35788887 37888899999999742 1 2 3558999999349999 999999987653
No 16
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.00023 Score=56.90 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=25.8
Q ss_pred cccccCcCC--CCCCC-CCCCcCCCccccCCCc
Q 036437 185 YRTEACKDG--KNCKR-KVCFFAHSPRQLRILP 214 (431)
Q Consensus 185 YKTk~Ck~~--~nC~r-~~C~FAHgeeELR~~p 214 (431)
.|+++|+.| +.|++ ..|.|||+++|||...
T Consensus 18 ~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~ 50 (69)
T 2d9m_A 18 GYFSICDRYMNGTCPEGNSCKFAHGNAELHEWE 50 (69)
T ss_dssp SCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHHH
T ss_pred CCcccCcccCcCCCCCCCccCCcCCHHHHhhHH
Confidence 477999997 68999 5899999999999743
No 17
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.40 E-value=0.0016 Score=52.95 Aligned_cols=59 Identities=22% Similarity=0.430 Sum_probs=43.1
Q ss_pred ccccccCC---CCCCCCC-CCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccc
Q 036437 114 FKIRRCTR---SRSHDWT-DCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECW 179 (431)
Q Consensus 114 FKTr~Cpr---~~cHd~t-~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELr 179 (431)
.|+..|.. +.|..++ .|.|+|.... .....-+...|-+|.+| .|.++ .|.|.|...++.
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~-----~~~~~~~~~vC~dflkG-~C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKS-----CQVENGRVIACFDSLKG-RCSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTT-----CCEETTEEECCHHHHTT-CCCCS-SCSSCCCCHHHH
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCcc-----ccccCCceeehhHhhhc-cccCC-CcceeCChHHHH
Confidence 46666763 6677775 9999998522 11112356799999998 99999 999999987654
No 18
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.75 E-value=0.0016 Score=53.14 Aligned_cols=64 Identities=31% Similarity=0.746 Sum_probs=46.3
Q ss_pred cccCCC-CCCCCCCCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCCCC
Q 036437 117 RRCTRS-RSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKN 195 (431)
Q Consensus 117 r~Cpr~-~cHd~t~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~~n 195 (431)
++|.++ .|.+ ..|+|.|... ..+|++.. .|.+ ..|.|+|= -.+.|+++..
T Consensus 10 e~CKf~~~Ctn-~~C~f~Hp~~-------------~~~Cr~g~---~C~~-~~C~f~HP-----------~~~~Crf~~~ 60 (80)
T 2lhn_A 10 EQCKFGTHCTN-KRCKYRHARS-------------HIMCREGA---NCTR-IDCLFGHP-----------INEDCRFGVN 60 (80)
Confidence 567665 4555 8999999631 23677543 6776 56888883 1478998889
Q ss_pred CCCCCCCcCCCccc
Q 036437 196 CKRKVCFFAHSPRQ 209 (431)
Q Consensus 196 C~r~~C~FAHgeeE 209 (431)
|.+..|.|.|.+..
T Consensus 61 C~n~~C~F~Hp~g~ 74 (80)
T 2lhn_A 61 CKNIYCLFRHPPGR 74 (80)
Confidence 99999999996543
No 19
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.33 E-value=0.0047 Score=50.96 Aligned_cols=57 Identities=23% Similarity=0.508 Sum_probs=40.7
Q ss_pred cccccC---CCCCCCCC-CCCCCCCccccccCCCCCCCccccccccccCCCCCCCCCCCCCCcCcccc
Q 036437 115 KIRRCT---RSRSHDWT-DCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFEC 178 (431)
Q Consensus 115 KTr~Cp---r~~cHd~t-~CPFAHn~EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG~~EL 178 (431)
|+..|. ++.|..+. .|.|+|..+.. . ...-+...|-+|.+| .|.++ .|.|.|....+
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~-~----v~~~~~~vC~dflkG-~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKSC-Q----VENGRVIACFDSLKG-RCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSSS-C----CBTTBEEBCHHHHHT-CCCCT-TCCSBCCCHHH
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCccc-c----ccCCceeeehhhhhC-cCCCC-CcceecCHHHH
Confidence 455565 35666676 99999985321 1 112356799999998 99998 99999997644
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=91.38 E-value=0.027 Score=45.98 Aligned_cols=42 Identities=29% Similarity=0.692 Sum_probs=34.0
Q ss_pred ccccccccCCCCCCCCCCCCCCcCccccccCccccccccCcCCCCCCCCCCCcCCC
Q 036437 151 GAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHS 206 (431)
Q Consensus 151 TtLCP~frkGg~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~~nC~r~~C~FAHg 206 (431)
-+.|++|. .|.+ ..|.|.|-.. ..+|+++..|.+..|.|+|.
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 35786665 6887 8999999642 44899999999999999996
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=82.31 E-value=0.37 Score=36.60 Aligned_cols=27 Identities=26% Similarity=0.722 Sum_probs=24.4
Q ss_pred ccccccccccCCCCCCCCCCCCCCcCc
Q 036437 149 YSGAVCSEYRRGGGCSLGDDCEFAHGV 175 (431)
Q Consensus 149 YKTtLCP~frkGg~CprGdsC~FAHG~ 175 (431)
.++.+|..|...|-|++|..|++.|.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred cccchhhhccccccCCCCCCCCccccC
Confidence 467899999987799999999999986
No 22
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=81.63 E-value=0.37 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=22.1
Q ss_pred ccccccccCCCCCCCCCCCCCCcCcc
Q 036437 151 GAVCSEYRRGGGCSLGDDCEFAHGVF 176 (431)
Q Consensus 151 TtLCP~frkGg~CprGdsC~FAHG~~ 176 (431)
+..|.+|.+| .|.+|++|+|.|...
T Consensus 70 ~~~C~ffakG-~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKG-MCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTT-CCSCGGGCSSBBSCC
T ss_pred CeEcCccccC-CCCCCCCCCccCCCC
Confidence 4599999997 999999999999853
No 23
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=58.15 E-value=6.7 Score=37.54 Aligned_cols=42 Identities=29% Similarity=0.660 Sum_probs=31.7
Q ss_pred cccccccccCC----CCCCCCCCCCCCcCccccccCccccccccCcCC--CCCCCCCCCcCCCc
Q 036437 150 SGAVCSEYRRG----GGCSLGDDCEFAHGVFECWLHPSRYRTEACKDG--KNCKRKVCFFAHSP 207 (431)
Q Consensus 150 KTtLCP~frkG----g~CprGdsC~FAHG~~ELryHP~~YKTk~Ck~~--~nC~r~~C~FAHge 207 (431)
-|+.|..| +| +.|..++.|..-| +|++| +.|++..|.-.|..
T Consensus 150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH---------------IC~~Fl~G~C~f~~CkRsH~~ 197 (229)
T 3u9g_A 150 LPEICKSY-KGEGRKQTCGQPQPCERLH---------------ICEHFTRGNCSYLNCLRSHNL 197 (229)
T ss_dssp SCCBCTTC-CCSSSCCSCSSSSCCCSBC---------------SCHHHHTTCCCCSSCSSCCCT
T ss_pred CchHHHHh-CCCCCCCcCCCCCCCccee---------------ccchhhcCCcCCCCccCccCc
Confidence 68999999 75 6899999998877 46555 46666666667764
No 24
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=48.38 E-value=4.1 Score=38.63 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=4.6
Q ss_pred cccccCCCCCCCccccccccccCCCCCCCCCCCCCCcC
Q 036437 137 EKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHG 174 (431)
Q Consensus 137 EkdRRRdPr~~~YKTtLCP~frkGg~CprGdsC~FAHG 174 (431)
+...|..|..-.-+..+||.-+ +|.+|.+|.|-|-
T Consensus 178 ~~~L~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 212 (223)
T 3v33_A 178 DNFLRKKPLTLEHRKQPCPYGR---KCTYGIKCRFFHP 212 (223)
T ss_dssp HHHTBSCC------------------------------
T ss_pred HHHhccCCCCcccCCCCCCCCc---ccccCCcceecCC
Confidence 3455666654334567888643 7888888888775
No 25
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=43.73 E-value=7.8 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.6
Q ss_pred cccccCcCC---CCCCC-CCCCcCCCcc
Q 036437 185 YRTEACKDG---KNCKR-KVCFFAHSPR 208 (431)
Q Consensus 185 YKTk~Ck~~---~nC~r-~~C~FAHgee 208 (431)
.+|.+|+.| +.|++ ..|++.|..+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 789999986 68998 5799999864
Done!