BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036438
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 201/427 (47%), Gaps = 73/427 (17%)
Query: 2 EINNVSSEIIKPSSPTPQHLKTHKLSVLDQV----------------------------- 32
++ VS E+I PSSPTPQ LK +K+S LDQ+
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHL 63
Query: 33 --------------AGRLKDEFSIDCDDTGATFIEARAAASDMSEIVKQPTVDMLEQLMP 78
AGR+ S+DC+D+G F+EAR A I ++ L+Q +P
Sbjct: 64 KQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLP 123
Query: 79 YKLNEKPSVAVN----LAAKVTYFEHCGGMALCVCFSHVIADITTAANFIKTWVTFASGS 134
+ VN LA K+++FE CGG A+ V SH IAD+ + A F+ W G
Sbjct: 124 SAAYPGGKIEVNEDVPLAVKISFFE-CGGTAIGVNLSHKIADVLSLATFLNAWTATCRG- 181
Query: 135 DTSSEDDDVIKHAVFGCSSIFPPQKFSSFSRNVISENHSNSAEILTKRFIFDGDKIAALK 194
E + V+ + FPP + V EN ++ KRF+FD +KI AL+
Sbjct: 182 ----ETEIVLPNFDLAARH-FPPVDNTPSPELVPDEN------VVMKRFVFDKEKIGALR 230
Query: 195 EKMGSESSSGYHPTRVEAVSAIILGGIMSVEKQADDFNHSHLVASIAVNLRNRVNPPIPE 254
+ S +S + +RV+ V A I ++ V + + +V AVNLR+R+NPP+P
Sbjct: 231 AQ-ASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQ-AVNLRSRMNPPLPH 288
Query: 255 QSIGNIVQAGIAKLPIEKKTIDYRNLAETLHKSIEKINDEYLRKFHADGGFLSNMNDVLE 314
++GNI A + E D+ +L L S+EK D++ + L M + E
Sbjct: 289 YAMGNIATLLFAAVDAEWDK-DFPDLIGPLRTSLEKTEDDH------NHELLKGMTCLYE 341
Query: 315 GLFDKNCRWFTISAWCRRPLYEADFGWGKP-AWVSTVMKHKDVAVLLDSSDGKGIEAWVA 373
+ + ++WCR Y+ DFGWGKP + +T ++ A+L+D+ G G+EAW+
Sbjct: 342 L---EPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLP 398
Query: 374 LPKKDMA 380
+ + +MA
Sbjct: 399 MAEDEMA 405
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 37/374 (9%)
Query: 32 VAGRLK-DE---FSIDCDDTGATFIEARA--AASDMSEIVKQPTVDMLEQLMPYKLNEKP 85
+AGRLK DE I+C+ G F+EA + D + PT+++ + ++
Sbjct: 72 MAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQGI 129
Query: 86 SVAVNLAAKVTYFEHCGGMALCVCFSHVIADITTAANFIKTWVTFASGSDTSSE---DDD 142
S L +VTYF+ CGG++L V H AD + +FI +W A G D + D
Sbjct: 130 SSYALLVLQVTYFK-CGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRT 188
Query: 143 VIK-----HAVFGCSSIFPPQKFSSFSRNVISENHSNSAEILTKRFIFDGDKIAALKEKM 197
+++ F PP + S++ +A + F ++I+ALK K
Sbjct: 189 LLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSI---FKLTREQISALKAKS 245
Query: 198 GSESSSGYHPTRVEAVSAIILGGIMSVEKQADDFNHSHLVASIAVNLRNRVNPPIPEQSI 257
+ ++ + + + + + D + IA + R R+ P +P
Sbjct: 246 KEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLY----IATDGRARLRPSLPPGYF 301
Query: 258 GNIVQAGIAKLPI------EKKTIDYRNLAETLHKSIEKINDEYLRKFHADGGFLSNMND 311
GN++ PI E K + Y A +H ++ +++++YLR ++
Sbjct: 302 GNVI---FTATPIAIAGDLEFKPVWY--AASKIHDALARMDNDYLRSALDYLELQPDLKA 356
Query: 312 VLEGLFDKNCRWFTISAWCRRPLYEADFGWGKPAWVST-VMKHKDVAVLLDSSDGKG-IE 369
++ G C I++W R P+++ADFGWG+P ++ + ++ ++ +L S G +
Sbjct: 357 LVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMS 416
Query: 370 AWVALPKKDMAKFE 383
++L + M F+
Sbjct: 417 VAISLQGEHMKLFQ 430
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 37/374 (9%)
Query: 32 VAGRLK-DE---FSIDCDDTGATFIEARA--AASDMSEIVKQPTVDMLEQLMPYKLNEKP 85
+AGRLK DE I+C+ G F+EA + D + PT+++ + ++
Sbjct: 75 MAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQGI 132
Query: 86 SVAVNLAAKVTYFEHCGGMALCVCFSHVIADITTAANFIKTWVTFASGSDTSSE---DDD 142
S L +VTYF+ CGG++L V H AD + +FI +W A G D + D
Sbjct: 133 SSYALLVLQVTYFK-CGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRT 191
Query: 143 VIK-----HAVFGCSSIFPPQKFSSFSRNVISENHSNSAEILTKRFIFDGDKIAALKEKM 197
+++ F PP + + S++ +A + F ++I+ALK K
Sbjct: 192 LLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI---FKLTREQISALKAKS 248
Query: 198 GSESSSGYHPTRVEAVSAIILGGIMSVEKQADDFNHSHLVASIAVNLRNRVNPPIPEQSI 257
+ ++ + + + + + D + IA + R R+ P +P
Sbjct: 249 KEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLY----IATDGRARLRPSLPPGYF 304
Query: 258 GNIVQAGIAKLPI------EKKTIDYRNLAETLHKSIEKINDEYLRKFHADGGFLSNMND 311
GN++ PI E K + Y A +H ++ +++++YLR ++
Sbjct: 305 GNVI---FTATPIAIAGDLEFKPVWY--AASKIHDALARMDNDYLRSALDYLELQPDLKA 359
Query: 312 VLEGLFDKNCRWFTISAWCRRPLYEADFGWGKPAWVST-VMKHKDVAVLLDSSDGKG-IE 369
++ G I++W R P+++ADFGWG+P ++ + ++ ++ +L S G +
Sbjct: 360 LVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMS 419
Query: 370 AWVALPKKDMAKFE 383
++L + M F+
Sbjct: 420 VAISLQGEHMKLFQ 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 37/374 (9%)
Query: 32 VAGRLK-DE---FSIDCDDTGATFIEARA--AASDMSEIVKQPTVDMLEQLMPYKLNEKP 85
+AGRLK DE I+C+ G F+EA + D + PT+++ + ++
Sbjct: 75 MAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAVDYSQGI 132
Query: 86 SVAVNLAAKVTYFEHCGGMALCVCFSHVIADITTAANFIKTWVTFASGSDTSSE---DDD 142
S L +VTYF+ GG++L V H AD + +FI +W A G D + D
Sbjct: 133 SSYALLVLQVTYFK-XGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRT 191
Query: 143 VIK-----HAVFGCSSIFPPQKFSSFSRNVISENHSNSAEILTKRFIFDGDKIAALKEKM 197
+++ F PP + + S++ +A + F ++I+ALK K
Sbjct: 192 LLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI---FKLTREQISALKAKS 248
Query: 198 GSESSSGYHPTRVEAVSAIILGGIMSVEKQADDFNHSHLVASIAVNLRNRVNPPIPEQSI 257
+ ++ + + + + + D + IA + R R+ P +P
Sbjct: 249 KEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLY----IATDGRARLRPSLPPGYF 304
Query: 258 GNIVQAGIAKLPI------EKKTIDYRNLAETLHKSIEKINDEYLRKFHADGGFLSNMND 311
GN++ PI E K + Y A +H ++ +++++YLR ++
Sbjct: 305 GNVI---FTATPIAIAGDLEFKPVWY--AASKIHDALARMDNDYLRSALDYLELQPDLKA 359
Query: 312 VLEGLFDKNCRWFTISAWCRRPLYEADFGWGKPAWVST-VMKHKDVAVLLDSSDGKG-IE 369
++ G I++W R P+++ADFGWG+P ++ + ++ ++ +L S G +
Sbjct: 360 LVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMS 419
Query: 370 AWVALPKKDMAKFE 383
++L + M F+
Sbjct: 420 VAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 35/320 (10%)
Query: 91 LAAKVTYFEHCGGMALCVCFSHVIADITTAANFIKTWVTFA-SGSD--------TSSEDD 141
+ +VT F + G+A+ + H + D +T F+K W + A SG++ T D
Sbjct: 150 FSVQVTLFPN-QGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYD 208
Query: 142 DVIKHAVFGCSSIFPPQKFSSFSRNVISENHSNSAEILTKRFIFDGDKIAALKEKMGSES 201
+IK+ + + K SF+ + ++++ + ++ L FI I LK+++ ++
Sbjct: 209 RIIKYPMLD-EAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQ- 266
Query: 202 SSGYHPTRVEAVSAIILGGIMSVEKQADDFNHSHLVASIAVNLRNRVNPPIPEQSIGNIV 261
PT +E VS+ + A N + ++ R R+ PPIP GN V
Sbjct: 267 ----LPT-LEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARMKPPIPTAYFGNCV 321
Query: 262 Q--AGIAKLPI----EKKTIDYRNLAETLHKSIEKINDEYLRKFHADGGFLSNMNDVLEG 315
A IAK + E + + E LHK++ D L+ + + ND++
Sbjct: 322 GGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDD------MESFNDLVSE 375
Query: 316 LFDKNCRWFTISAWCRRPLYEADFGWGKPAWVSTVMKHKDVAVLLDSS--DGKGIEAWVA 373
W +S + Y+ DFGWGKP + TV + A+ ++S + +E V
Sbjct: 376 GMPTTMTW--VSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVC 433
Query: 374 LPKKDMAKFEQ--DSGILRY 391
+ M F D G+ Y
Sbjct: 434 ISATQMEDFVHIFDDGLKAY 453
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 91 LAAKVTYFEHCGGMALCVCFSHVIADITTAANFIKTWVTFA-SGSD--------TSSEDD 141
+ +VT F + G+A+ + H + D +T F+K W + A SG++ T D
Sbjct: 150 FSVQVTLFPN-QGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYD 208
Query: 142 DVIKHAVFGCSSIFPPQKFSSFSRNVISENHSNSAEILTKRFIFDGDKIAALKEKMGSES 201
+IK+ + K SF+ + ++++ + ++ L FI I LK+++ ++
Sbjct: 209 RIIKYPXLD-EAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQ- 266
Query: 202 SSGYHPTRVEAVSAIILGGIMSVEKQADDFNHSHLVASIAVNLRNRVNPPIPEQSIGNIV 261
PT +E VS+ + A N + ++ R R PPIP GN V
Sbjct: 267 ----LPT-LEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARXKPPIPTAYFGNCV 321
Query: 262 Q--AGIAKLPI----EKKTIDYRNLAETLHKSIEKINDEYLRKFHADGGFLSNMNDVLEG 315
A IAK + E + + E LHK++ D L+ + ND++
Sbjct: 322 GGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDX------ESFNDLVSE 375
Query: 316 LFDKNCRWFTISAWCRRPLYEADFGWGKPAWVSTVMKHKDVAVLLDS 362
W +S + Y+ DFGWGKP + TV + A+ ++S
Sbjct: 376 GXPTTXTW--VSGTPKLRFYDXDFGWGKPKKLETVSIDHNGAISINS 420
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 102/272 (37%), Gaps = 26/272 (9%)
Query: 87 VAVNLAAKVTYFEHCGGMALCVCFSHVIADITTAANFIKTWV---------TFASGSDTS 137
+A LA +VT F + G+++ HV D T F++ W F +
Sbjct: 141 LAPVLAIQVTLFPN-HGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIP 199
Query: 138 SEDDDVIKHAVFGCSSIFPPQKFSSFSRNVISENHSNSAEILTKRFIFDGDKIAALKEKM 197
D VIK SI+ K + + + + FI I LK +
Sbjct: 200 FYDRSVIKDPNGVGXSIWNEXK--KYKHXXKXSDVVTPPDKVRGTFIITRHDIGKLKNLV 257
Query: 198 GSESSSGYHPTRVEAVSAIILGGIMSVEKQAD---DFNHSHLVASIAVNLRNRVNPPIPE 254
+ H T A + I+ E D N A + R + NPP+P
Sbjct: 258 LTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGC-AADCRAQFNPPLPP 316
Query: 255 QSIGNIVQAGIAKLPIEKKTIDYRNLAETLHKSIEKINDEYLRKFHADGGFLSNMNDVLE 314
GN + +A+ + +D E ++E I E +RK D ++ + + E
Sbjct: 317 SYFGNALVGYVAR----TRQVDLAG-KEGFTIAVELIG-EAIRKRXKDEEWILSGSWFKE 370
Query: 315 GLFDK--NCRWFTISAWCRRPLYEADFGWGKP 344
+DK R +++ + LY ADFGWG+P
Sbjct: 371 --YDKVDAKRSLSVAGSPKLDLYAADFGWGRP 400
>pdb|2WAA|A Chain A, Structure Of A Family Two Carbohydrate Esterase From
Cellvibrio Japonicus
Length = 347
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 160 FSSFSRNVISENHSNSAEILTKRFIFDGDKIAALKEKMGSESSSGYHPTRV 210
++ F R ++ +NH + +LT+ I +GDK AAL +G E+ H RV
Sbjct: 252 YTRFVRTLL-DNHPQATIVLTEGAILNGDKKAALVSYIG-ETRQQLHSNRV 300
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 192 ALKEKMGSESSSGYHPTRVEAVSAIILGGIMSVE 225
A+K ++G E G +P V A+ A I GG+++ E
Sbjct: 321 AIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGE 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,558,714
Number of Sequences: 62578
Number of extensions: 460941
Number of successful extensions: 1230
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 14
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)