BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036439
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/254 (51%), Positives = 158/254 (62%), Gaps = 27/254 (10%)
Query: 55 NKLVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHS 114
N +VLP+Q D +T L N+ KR PL QVP +V LNG LWV CEQ Y S TY AP CHS
Sbjct: 8 NLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHS 67
Query: 115 TQCARANTPYCHTCNSTPRPGCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKGS--K 172
TQC+RANT C +C + RPGCH NTCGLM+TNP+T Q + EL +DVL+I +T+GS +
Sbjct: 68 TQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQ 127
Query: 173 PGPLVRVPRFLFAC----------------IAGLGHAPISLPNQLASHFGFPPKFALCLP 216
GPLV VP+FLF+C +AGLGHAPISLPNQLASHFG +F CL
Sbjct: 128 LGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCL- 186
Query: 217 SSASNVPNGAIFFGDGPYLM--LPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK--- 271
S GAI FGD P M DI L FTPLTI+ +G+Y + + SIRIN
Sbjct: 187 -SRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVF 245
Query: 272 --QNVKWTIIGANS 283
+ TI+G+ S
Sbjct: 246 PLNKISSTIVGSTS 259
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 276 WTIIGANSMVQARSGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQF 321
W I G + MVQA+ GVTCL +NGG++PR+ I +G+ QL++NLV F
Sbjct: 328 WRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVF 373
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 151/249 (60%), Gaps = 30/249 (12%)
Query: 51 AFNPNKLVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAP 110
+F P+ LV+P++KD +T ++T I++R PL VV L G+FLWV C+Q+Y+SSTY
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 111 LCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKG 170
C ++QC+ + + C C + PRPGC+NNTCG+ NP+ + A E+A+DV+S++ST G
Sbjct: 63 RCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDG 122
Query: 171 SKPGPLVRVPRFLFAC---------------IAGLGHAPISLPNQLASHFGFPPKFALCL 215
S G +V VPRF+F+C +AGLG I+LP+Q AS F F KFA+CL
Sbjct: 123 SSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL 182
Query: 216 PSSASNVPNGAIFFGDGPYLMLPGIDISSQ-LRFTPLTISPEG------------QYYIT 262
S S+ N I FG+ PY LP I +S + L +TPL +P +Y+I
Sbjct: 183 SGSTSS--NSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 263 LTSIRINNK 271
+ SI+IN+K
Sbjct: 241 VKSIKINSK 249
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%)
Query: 272 QNVKWTIIGANSMVQARSGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQFXXXXXXXXXX 331
++V WTI G+NSMV V CL V+GG R+SI+IG HQL+DNLVQF
Sbjct: 337 ESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
Query: 332 XXXXXXRTSCSNFNFSA 348
RT+C+NFNF++
Sbjct: 397 GTLLGSRTTCANFNFTS 413
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 151/249 (60%), Gaps = 30/249 (12%)
Query: 51 AFNPNKLVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAP 110
+F P+ LV+P++KD +T ++T I++R PL VV L G+FLWV C+Q+Y+SSTY
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 111 LCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKG 170
C ++QC+ + + C C + PRPGC+NNTCG+ NP+ + A E+A+DV+S++ST G
Sbjct: 63 RCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDG 122
Query: 171 SKPGPLVRVPRFLFAC---------------IAGLGHAPISLPNQLASHFGFPPKFALCL 215
S G +V VPRF+F+C +AGLG I+LP+Q AS F F KFA+CL
Sbjct: 123 SSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL 182
Query: 216 PSSASNVPNGAIFFGDGPYLMLPGIDISSQ-LRFTPLTISPEG------------QYYIT 262
S S+ N I FG+ PY LP I +S + L +TPL +P +Y+I
Sbjct: 183 SGSTSS--NSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 263 LTSIRINNK 271
+ SI+IN+K
Sbjct: 241 VKSIKINSK 249
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%)
Query: 272 QNVKWTIIGANSMVQARSGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQFXXXXXXXXXX 331
++V WTI G+NSMV V CL V+GG R+SI+IG HQL+DNLVQF
Sbjct: 337 ESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
Query: 332 XXXXXXRTSCSNFNFSA 348
RT+C+NFNF++
Sbjct: 397 GTLLGSRTTCANFNFTS 413
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 51/242 (21%)
Query: 57 LVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQ 116
++ P+ KD AT L+ H L V+ + G +W CE S
Sbjct: 5 VLAPVTKDTATSLYTIPFHDGASL-----VLDVAGLLVWSTCEGG-----------QSPA 48
Query: 117 CARANTPYCHTCNSTPRPGC---------HNNTCGLMATNPMTHQAAMAELAQDVLSIQS 167
++P C N+ P PGC H+ C +NP+T A L + +
Sbjct: 49 EIACSSPTCLLANAYPAPGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANT 108
Query: 168 TKGSKPGPLVRVPRFLFAC---------------IAGLGHAPISLPNQLASHFGFPPKFA 212
T G+KP V V R L AC +AGL + ++LP+Q+AS P KF
Sbjct: 109 TDGNKPVSEVNV-RVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFL 167
Query: 213 LCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQ--YYITLTSIRINN 270
LCLP+ G FG GP LP + + +TPL ++ G +YI+ SI++ N
Sbjct: 168 LCLPTGGP----GVAIFGGGP---LPWPQFTQSMDYTPL-VAKGGSPAHYISARSIKVEN 219
Query: 271 KQ 272
+
Sbjct: 220 TR 221
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 257 GQYYITLTSIRINNKQNVKWTIIGANSMVQARSGVTCLAF-----VNGGVRPRSSIIIGS 311
G Y++ + ++ + W + G NSMV + G C+AF V+ G ++I+G
Sbjct: 295 GGYWVPNVLLELDGGSD--WAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILGG 352
Query: 312 HQLQDNLVQFXXXXXXXXXXXXXXXXRTSCSNFNFS 347
Q++D ++ F T CS+FNF+
Sbjct: 353 AQMEDFVLDFDMEKKRLGFLRLPHF--TGCSSFNFA 386
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 49/241 (20%)
Query: 57 LVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQ 116
++ P+ KD AT L+ H L V+ + G +W C+ + C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASL-----VLDVAGPLVWSTCDGGQPPAEIP---CSS-- 52
Query: 117 CARANTPYCHTCNSTPRPGC---------HNNTCGLMATNPMTHQAAMAELAQDVLSIQS 167
P C N+ P PGC H+ C NP++ A L+ +
Sbjct: 53 ------PTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANT 106
Query: 168 TKGSKPGPLVRVPRFLFAC---------------IAGLGHAPISLPNQLASHFGFPPKFA 212
T GSKP V V L AC +AGL ++ ++LP Q+AS +F
Sbjct: 107 TDGSKPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFL 165
Query: 213 LCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPL-TISPEGQYYITLTSIRINNK 271
LCLP+ G FG GP +P + + +TPL T +YI+ SI + +
Sbjct: 166 LCLPTGGP----GVAIFGGGP---VPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDT 218
Query: 272 Q 272
+
Sbjct: 219 R 219
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 257 GQYYITLTSIRINNKQNVKWTIIGANSMVQARSGVTCLAFVN-----GGVRPRSSIIIGS 311
G Y + + ++ + WT+ G NSMV + G C+AFV G ++I+G
Sbjct: 293 GGYAVPNVQLGLDGGSD--WTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGG 350
Query: 312 HQLQDNLVQF 321
Q++D ++ F
Sbjct: 351 AQMEDFVLDF 360
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 49/241 (20%)
Query: 57 LVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQ 116
++ P+ KD AT L+ H L V+ + G +W C+ + C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASL-----VLDVAGPLVWSTCKGGQPPAEIP---CSS-- 52
Query: 117 CARANTPYCHTCNSTPRPGC---------HNNTCGLMATNPMTHQAAMAELAQDVLSIQS 167
P C N+ P PGC H+ C NP++ A L+ +
Sbjct: 53 ------PTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANT 106
Query: 168 TKGSKPGPLVRVPRFLFAC---------------IAGLGHAPISLPNQLASHFGFPPKFA 212
T GSKP V V L AC +AGL ++ ++LP Q+AS +F
Sbjct: 107 TDGSKPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFL 165
Query: 213 LCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPL-TISPEGQYYITLTSIRINNK 271
LCLP+ G FG GP +P + + +TPL T +YI+ SI + +
Sbjct: 166 LCLPTGGP----GVAIFGGGP---VPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDT 218
Query: 272 Q 272
+
Sbjct: 219 R 219
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 257 GQYYITLTSIRINNKQNVKWTIIGANSMVQARSGVTCLAFVN-----GGVRPRSSIIIGS 311
G Y + + ++ + WT+ G NSMV + G C+AFV G ++I+G
Sbjct: 293 GGYAVPNVQLGLDGGSD--WTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGG 350
Query: 312 HQLQDNLVQF 321
Q++D ++ F
Sbjct: 351 AQMEDFVLDF 360
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 120 ANTPYCHTCNSTPRPGCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTK 169
A T +C ++ P G NN GL+ N H + + E+A + L +++
Sbjct: 286 APTEFCRAVDARPAXGVSNNYPGLL-QNXTYHNSTIGEIANESLGATASR 334
>pdb|3FGB|A Chain A, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b.
pdb|3FGB|B Chain B, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b
Length = 361
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 71 ITNIHKRNPLKQVPFVVHLNGQFLWVACEQS-----YLSSTYHAPLCHSTQCARANTPYC 125
+T IH RN F++ NG++L VAC S Y T L + + + P C
Sbjct: 295 LTGIHPRN------FIITPNGKYLLVACRDSNVIQVYERDTDTGLLTDIRKDIKVDKPVC 348
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 50 TAFNPNKLVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACE---QSYLSS 105
T +PNK L + +D A + N NP ++ + + NGQ L V E + Y++S
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITW--YRNGQRLEVPVEMNPEGYMTS 175
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 120 ANTPYCHTCNSTPRPGCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTK 169
A T +C ++ P G NN GL+ N H + + E+A + L +++
Sbjct: 285 APTEFCRAVDARPAMGVSNNYPGLL-QNMTYHNSTIGEIANESLGATASR 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,577,561
Number of Sequences: 62578
Number of extensions: 368557
Number of successful extensions: 540
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 24
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)