Query 036439
Match_columns 350
No_of_seqs 245 out of 1331
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-46 3.7E-51 367.6 26.5 254 76-334 2-362 (362)
2 PLN03146 aspartyl protease fam 100.0 8E-46 1.7E-50 370.5 26.6 245 66-343 81-430 (431)
3 KOG1339 Aspartyl protease [Pos 100.0 4.1E-43 8.9E-48 348.0 28.1 249 66-342 43-397 (398)
4 cd05475 nucellin_like Nucellin 100.0 6.4E-42 1.4E-46 323.0 25.7 217 68-341 1-273 (273)
5 cd05472 cnd41_like Chloroplast 100.0 5.4E-41 1.2E-45 320.1 24.4 208 69-341 1-299 (299)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.2E-41 1.8E-45 323.0 25.9 242 68-342 2-326 (326)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 6.1E-40 1.3E-44 316.5 27.5 236 65-332 2-325 (325)
8 PTZ00165 aspartyl protease; Pr 100.0 6.2E-40 1.4E-44 331.0 28.0 245 57-334 109-447 (482)
9 cd05476 pepsin_A_like_plant Ch 100.0 5.2E-40 1.1E-44 308.5 25.2 206 69-341 1-265 (265)
10 cd06098 phytepsin Phytepsin, a 100.0 2.4E-39 5.2E-44 311.6 27.2 239 60-332 2-317 (317)
11 cd05486 Cathespin_E Cathepsin 100.0 1.4E-39 3.1E-44 312.9 25.3 229 70-332 1-316 (316)
12 cd05478 pepsin_A Pepsin A, asp 100.0 7.5E-39 1.6E-43 308.0 26.7 232 60-332 2-317 (317)
13 cd05488 Proteinase_A_fungi Fun 100.0 1.3E-38 2.8E-43 306.8 26.4 235 59-332 1-320 (320)
14 cd05485 Cathepsin_D_like Cathe 100.0 3.6E-38 7.9E-43 305.0 26.4 236 64-331 6-328 (329)
15 cd05477 gastricsin Gastricsins 100.0 9.6E-38 2.1E-42 300.3 27.6 229 67-332 1-317 (318)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.5E-37 5.4E-42 309.5 28.3 248 57-334 127-449 (450)
17 PTZ00147 plasmepsin-1; Provisi 100.0 2.6E-37 5.7E-42 309.8 27.8 250 55-334 126-450 (453)
18 cd05487 renin_like Renin stimu 100.0 5E-37 1.1E-41 296.5 27.4 246 64-332 3-325 (326)
19 cd06097 Aspergillopepsin_like 100.0 1.2E-35 2.7E-40 280.5 23.6 226 70-332 1-278 (278)
20 cd05473 beta_secretase_like Be 100.0 4.1E-35 8.8E-40 287.4 23.4 240 68-344 2-350 (364)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.3E-34 2.9E-39 274.7 24.3 200 69-332 2-294 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 6.1E-33 1.3E-37 264.8 21.5 229 69-332 1-316 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 6.3E-32 1.4E-36 253.3 24.7 231 70-332 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.8E-29 4E-34 221.2 16.0 147 70-231 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.7 9.2E-16 2E-20 124.5 11.5 88 72-186 1-89 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.4 1.9E-12 4E-17 113.0 9.1 61 272-332 101-161 (161)
27 cd05483 retropepsin_like_bacte 94.7 0.037 8.1E-07 42.7 3.7 28 69-98 2-29 (96)
28 TIGR02281 clan_AA_DTGA clan AA 89.5 0.68 1.5E-05 38.3 4.9 37 59-98 2-38 (121)
29 cd05484 retropepsin_like_LTR_2 84.0 1.1 2.4E-05 34.7 3.1 27 70-98 1-27 (91)
30 PF13975 gag-asp_proteas: gag- 73.8 5.6 0.00012 29.5 4.0 31 66-98 5-35 (72)
31 cd05479 RP_DDI RP_DDI; retrope 64.8 9.2 0.0002 31.5 3.9 31 66-98 13-43 (124)
32 PF00077 RVP: Retroviral aspar 64.5 9 0.0002 29.8 3.6 26 71-98 7-32 (100)
33 PF07172 GRP: Glycine rich pro 62.5 3.9 8.5E-05 32.5 1.1 14 24-37 8-21 (95)
34 PF13650 Asp_protease_2: Aspar 60.8 8.6 0.00019 28.8 2.8 23 73-97 2-24 (90)
35 cd05475 nucellin_like Nucellin 53.3 27 0.00058 32.6 5.3 45 55-99 144-194 (273)
36 cd05482 HIV_retropepsin_like R 41.5 31 0.00068 26.9 3.1 24 73-98 2-25 (87)
37 cd06095 RP_RTVL_H_like Retrope 38.6 33 0.00072 26.1 2.9 23 74-98 3-25 (86)
38 PLN03146 aspartyl protease fam 33.4 74 0.0016 32.1 5.2 44 56-99 267-324 (431)
39 cd05471 pepsin_like Pepsin-lik 33.0 67 0.0015 29.3 4.5 46 53-99 166-219 (283)
40 PF09668 Asp_protease: Asparty 29.5 84 0.0018 26.2 4.0 30 66-97 21-50 (124)
41 cd05472 cnd41_like Chloroplast 29.3 72 0.0016 29.9 4.1 47 53-99 130-188 (299)
42 PRK13617 psbV cytochrome c-550 27.5 71 0.0015 28.2 3.4 12 53-64 37-48 (170)
43 cd05474 SAP_like SAPs, pepsin- 24.4 1E+02 0.0022 28.7 4.1 45 55-99 138-195 (295)
44 PF12384 Peptidase_A2B: Ty3 tr 23.8 1E+02 0.0022 27.2 3.6 45 53-99 14-62 (177)
45 cd06096 Plasmepsin_5 Plasmepsi 23.4 91 0.002 29.8 3.7 41 56-99 199-248 (326)
46 cd06098 phytepsin Phytepsin, a 23.3 83 0.0018 30.0 3.4 41 55-98 178-226 (317)
47 cd06097 Aspergillopepsin_like 22.7 70 0.0015 29.7 2.7 43 55-99 166-215 (278)
48 COG3577 Predicted aspartyl pro 22.2 1.9E+02 0.004 26.5 5.1 38 58-98 95-132 (215)
49 cd05476 pepsin_A_like_plant Ch 21.7 1.6E+02 0.0034 27.2 4.8 47 53-99 130-193 (265)
50 TIGR03698 clan_AA_DTGF clan AA 21.2 1E+02 0.0023 24.6 3.0 27 72-98 2-33 (107)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.7e-46 Score=367.63 Aligned_cols=254 Identities=53% Similarity=0.950 Sum_probs=209.1
Q ss_pred ecCCCCe-EeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCC-CCCCCCCCCCCCCceeeeEe-cCCCCc
Q 036439 76 KRNPLKQ-VPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCH-TCNSTPRPGCHNNTCGLMAT-NPMTHQ 152 (350)
Q Consensus 76 iGTP~q~-~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~-~css~~~~~c~~~~c~~~~~-y~~~g~ 152 (350)
+|||..+ +.|++||||+++||+|+++ +|+||+.++|++..|+.+.+++|. .|.+.+++.|.++.|.|... |. +++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~-~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~-~gs 79 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG-HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPV-TGE 79 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC-CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccc-cCc
Confidence 6899888 9999999999999999986 577999999999999988877776 35555566798889999654 32 677
Q ss_pred eEEEEEEEEEEEecccCCCCCCCceeecCeeeEE---------------EEecCCCCCCchhhhccccCCCceeEEecCC
Q 036439 153 AAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC---------------IAGLGHAPISLPNQLASHFGFPPKFALCLPS 217 (350)
Q Consensus 153 ~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc---------------IlGLg~~~~Sl~~Ql~~~~~~~~~FS~cL~~ 217 (350)
.++|.|++|+|+|+..++..+. .+.++++.||| |||||++++|+++|+....+.+++||+||++
T Consensus 80 ~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~ 158 (362)
T cd05489 80 CATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPS 158 (362)
T ss_pred EeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCC
Confidence 9999999999999876543222 24688999999 9999999999999998766667999999997
Q ss_pred CCCCCCCceEEEcCCCCCcCC-ccccCCCeeEEecccCC--CccEEEEEeEEEEcCe-----------------------
Q 036439 218 SASNVPNGAIFFGDGPYLMLP-GIDISSQLRFTPLTISP--EGQYYITLTSIRINNK----------------------- 271 (350)
Q Consensus 218 ~~~~~~~G~l~fGg~~~~~~p-~~~~~g~l~ytPl~~~~--~~~y~i~l~~I~V~g~----------------------- 271 (350)
.. ..+|+|+||+.+..+.+ +.+.++.++||||+.++ +.+|+|+|++|+||++
T Consensus 159 ~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDS 236 (362)
T cd05489 159 SP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLST 236 (362)
T ss_pred CC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEec
Confidence 64 45899999998753211 01234789999999874 3799999999999865
Q ss_pred -------------------------------------------------------------e--ceEEEEccCccEEEeC
Q 036439 272 -------------------------------------------------------------Q--NVKWTIIGANSMVQAR 288 (350)
Q Consensus 272 -------------------------------------------------------------~--g~~~~i~g~ny~v~~~ 288 (350)
+ |++|+|+++||++++.
T Consensus 237 GTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~ 316 (362)
T cd05489 237 VVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVK 316 (362)
T ss_pred CCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcC
Confidence 2 4788899999999988
Q ss_pred CCceEEEEEeCCCCCCCceEEcHHHhcceEEEEeCCCCEEEeeecC
Q 036439 289 SGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSSSL 334 (350)
Q Consensus 289 ~~~~Clg~~~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl 334 (350)
++..||||++++..+.+.||||++|||++|++||++++|||||++|
T Consensus 317 ~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 317 GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence 7789999998764335689999999999999999999999999875
No 2
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=8e-46 Score=370.52 Aligned_cols=245 Identities=29% Similarity=0.508 Sum_probs=199.7
Q ss_pred CCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCC-------------CCCCcccCCCCCChhccccCCCCCCCCCCCC
Q 036439 66 ATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQS-------------YLSSTYHAPLCHSTQCARANTPYCHTCNSTP 132 (350)
Q Consensus 66 ~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c-------------~~SsTy~~v~C~s~~C~~~~~~~c~~css~~ 132 (350)
.+.+|+++|.||||||++.|++||||+++||+|++| .+|+||+.++|.++.|+......+ |.
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~--c~--- 155 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQAS--CS--- 155 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCC--CC---
Confidence 578999999999999999999999999999999865 389999999999999976543221 21
Q ss_pred CCCCCCCceeeeEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE--------------EEecCCCCCCch
Q 036439 133 RPGCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC--------------IAGLGHAPISLP 198 (350)
Q Consensus 133 ~~~c~~~~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc--------------IlGLg~~~~Sl~ 198 (350)
.++.|.|.+.|+ +|+.+.|.+++|+|+|++..+ ....++++.||| |||||++++|++
T Consensus 156 ----~~~~c~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~----~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~ 226 (431)
T PLN03146 156 ----DENTCTYSYSYG-DGSFTKGNLAVETLTIGSTSG----RPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLI 226 (431)
T ss_pred ----CCCCCeeEEEeC-CCCceeeEEEEEEEEeccCCC----CcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHH
Confidence 234699999986 888889999999999987532 224678889988 999999999999
Q ss_pred hhhccccCCCceeEEecCCCCC-CCCCceEEEcCCCCCcCCccccC-CCeeEEecccC-CCccEEEEEeEEEEcCe----
Q 036439 199 NQLASHFGFPPKFALCLPSSAS-NVPNGAIFFGDGPYLMLPGIDIS-SQLRFTPLTIS-PEGQYYITLTSIRINNK---- 271 (350)
Q Consensus 199 ~Ql~~~~~~~~~FS~cL~~~~~-~~~~G~l~fGg~~~~~~p~~~~~-g~l~ytPl~~~-~~~~y~i~l~~I~V~g~---- 271 (350)
+|+.... .++|||||++..+ ....|.|+||+.+. +. +.+.||||+.+ ++.+|+|+|++|+||++
T Consensus 227 sql~~~~--~~~FSycL~~~~~~~~~~g~l~fG~~~~-------~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~ 297 (431)
T PLN03146 227 SQLGSSI--GGKFSYCLVPLSSDSNGTSKINFGTNAI-------VSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPY 297 (431)
T ss_pred HHhhHhh--CCcEEEECCCCCCCCCCcceEEeCCccc-------cCCCCceEcccccCCCCCeEEEeEEEEEECCEECcC
Confidence 9997654 3699999976432 13479999998532 33 35899999864 24799999999999863
Q ss_pred -----------------------------------------------------------------------eceEEEEcc
Q 036439 272 -----------------------------------------------------------------------QNVKWTIIG 280 (350)
Q Consensus 272 -----------------------------------------------------------------------~g~~~~i~g 280 (350)
+|+++.+++
T Consensus 298 ~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~ 377 (431)
T PLN03146 298 TGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQP 377 (431)
T ss_pred CccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCc
Confidence 234566788
Q ss_pred CccEEEeCCCceEEEEEeCCCCCCCceEEcHHHhcceEEEEeCCCCEEEeeecCCCcCCCCCC
Q 036439 281 ANSMVQARSGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSSSLLFRRTSCSN 343 (350)
Q Consensus 281 ~ny~v~~~~~~~Clg~~~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl~~~~~~Cs~ 343 (350)
+||++++.++..|++++... +.||||+.|||++|++||++++||||+ +++|++
T Consensus 378 ~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa------~~~C~~ 430 (431)
T PLN03146 378 LNTFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFK------PTDCTK 430 (431)
T ss_pred ceeEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeee------cCCcCc
Confidence 89999887778999987643 369999999999999999999999999 599976
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-43 Score=347.95 Aligned_cols=249 Identities=31% Similarity=0.542 Sum_probs=205.2
Q ss_pred CCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCC--------------CCCcccCCCCCChhccccCCCCCCCCCCC
Q 036439 66 ATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSY--------------LSSTYHAPLCHSTQCARANTPYCHTCNST 131 (350)
Q Consensus 66 ~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~--------------~SsTy~~v~C~s~~C~~~~~~~c~~css~ 131 (350)
...+|+++|.||||||+|.|+|||||+++||+|.+|. +|+||+.+.|.+..|...... |
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~------ 115 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-C------ 115 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-c------
Confidence 5679999999999999999999999999999987662 789999999999999865432 1
Q ss_pred CCCCCCCCceeeeEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCC
Q 036439 132 PRPGCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPI 195 (350)
Q Consensus 132 ~~~~c~~~~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~ 195 (350)
|.++.|.|.+.|+ +++.++|.+++|+|++++.+ ...++++.||| |||||++++
T Consensus 116 ----~~~~~C~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~ 184 (398)
T KOG1339|consen 116 ----SPNSSCPYSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSL 184 (398)
T ss_pred ----ccCCcCceEEEeC-CCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccceEeecCCCCc
Confidence 2467899999987 87899999999999999842 01233344443 999999999
Q ss_pred CchhhhccccCCCceeEEecCCCCCC-CCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe---
Q 036439 196 SLPNQLASHFGFPPKFALCLPSSASN-VPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK--- 271 (350)
Q Consensus 196 Sl~~Ql~~~~~~~~~FS~cL~~~~~~-~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~--- 271 (350)
|+++|+....+..++||+||.+...+ ..+|.|+||+.+. .++.+.+.||||+.+++.+|+|+|++|+|+++
T Consensus 185 S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~-----~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~ 259 (398)
T KOG1339|consen 185 SVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDS-----SHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPI 259 (398)
T ss_pred cceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcc-----cCcCCceEEEeeccCCCccEEEEEeEEEECCccCC
Confidence 99999988776667899999987532 2589999999986 34678999999999843499999999999961
Q ss_pred -------------------------------------e---------------------------------ceEEEEccC
Q 036439 272 -------------------------------------Q---------------------------------NVKWTIIGA 281 (350)
Q Consensus 272 -------------------------------------~---------------------------------g~~~~i~g~ 281 (350)
. |+.|.++++
T Consensus 260 ~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~ 339 (398)
T KOG1339|consen 260 GSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPK 339 (398)
T ss_pred CcceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCcc
Confidence 1 677889999
Q ss_pred ccEEEeCCCce-EEEEEeCCCCCCCceEEcHHHhcceEEEEeCC-CCEEEeeecCCCcCCCCC
Q 036439 282 NSMVQARSGVT-CLAFVNGGVRPRSSIIIGSHQLQDNLVQFALA-GSRLGFSSSLLFRRTSCS 342 (350)
Q Consensus 282 ny~v~~~~~~~-Clg~~~~~~~~~~~~ILG~~~l~~~~vvFD~~-~~rIGFa~sl~~~~~~Cs 342 (350)
||+++++++.. |++++.+.... +.||||++|||+++++||++ ++||||++.+ +.|+
T Consensus 340 ~y~~~~~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~----~~c~ 397 (398)
T KOG1339|consen 340 NYLVEVSDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPAL----TNCS 397 (398)
T ss_pred ceEEEECCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEecccc----ccCC
Confidence 99999887544 99988765422 68999999999999999999 9999999765 6664
No 4
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.4e-42 Score=322.97 Aligned_cols=217 Identities=29% Similarity=0.507 Sum_probs=176.8
Q ss_pred ceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEec
Q 036439 68 HLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATN 147 (350)
Q Consensus 68 ~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y 147 (350)
++|+++|.||||||++.|+|||||+++||+|+. +|. .| .|.|.+.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~----------~c~----------~c--------------~c~~~i~Y 46 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDA----------PCT----------GC--------------QCDYEIEY 46 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCC----------CCC----------CC--------------cCccEeEe
Confidence 479999999999999999999999999999941 121 11 26799998
Q ss_pred CCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE-----------------EEecCCCCCCchhhhccccCCCce
Q 036439 148 PMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC-----------------IAGLGHAPISLPNQLASHFGFPPK 210 (350)
Q Consensus 148 ~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc-----------------IlGLg~~~~Sl~~Ql~~~~~~~~~ 210 (350)
+ +++.++|.+++|+|+|+..++.. .++++.||| |||||++++++++|+..+..++++
T Consensus 47 g-d~~~~~G~~~~D~v~~~~~~~~~-----~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~ 120 (273)
T cd05475 47 A-DGGSSMGVLVTDIFSLKLTNGSR-----AKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNV 120 (273)
T ss_pred C-CCCceEEEEEEEEEEEeecCCCc-----ccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCce
Confidence 5 78899999999999997643211 345666666 999999999999999875545789
Q ss_pred eEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCC-CccEEEEEeEEEEcCe------------------
Q 036439 211 FALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISP-EGQYYITLTSIRINNK------------------ 271 (350)
Q Consensus 211 FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~-~~~y~i~l~~I~V~g~------------------ 271 (350)
||+||++. .+|.|+||+.. ++.+++.||||..++ ..+|+|++++|+||++
T Consensus 121 Fs~~l~~~----~~g~l~~G~~~-------~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t 189 (273)
T cd05475 121 IGHCLSSN----GGGFLFFGDDL-------VPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYT 189 (273)
T ss_pred EEEEccCC----CCeEEEECCCC-------CCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceE
Confidence 99999873 37999999642 246789999998763 3699999999999876
Q ss_pred ---------------ec----eEEEEccCccEEEeCCCceEEEEEeCCC-CCCCceEEcHHHhcceEEEEeCCCCEEEee
Q 036439 272 ---------------QN----VKWTIIGANSMVQARSGVTCLAFVNGGV-RPRSSIIIGSHQLQDNLVQFALAGSRLGFS 331 (350)
Q Consensus 272 ---------------~g----~~~~i~g~ny~v~~~~~~~Clg~~~~~~-~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa 331 (350)
++ ++|+|+++||+++..++..|++++.+.. ...+.||||+.|||++|++||++++||||+
T Consensus 190 ~lp~~~y~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa 269 (273)
T cd05475 190 YFNAQAYFKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWV 269 (273)
T ss_pred EcCCccccccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcc
Confidence 23 7899999999998766779999886543 124589999999999999999999999999
Q ss_pred ecCCCcCCCC
Q 036439 332 SSLLFRRTSC 341 (350)
Q Consensus 332 ~sl~~~~~~C 341 (350)
+++|
T Consensus 270 ------~~~C 273 (273)
T cd05475 270 ------RSDC 273 (273)
T ss_pred ------cCCC
Confidence 4777
No 5
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.4e-41 Score=320.06 Aligned_cols=208 Identities=28% Similarity=0.554 Sum_probs=171.9
Q ss_pred eEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEecC
Q 036439 69 LFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNP 148 (350)
Q Consensus 69 ~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y~ 148 (350)
+|+++|.||||||++.|+|||||+++||+|++| |.|.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c---------------------------------------~~~~i~Yg 41 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------------------CLYQVSYG 41 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC---------------------------------------CeeeeEeC
Confidence 699999999999999999999999999998532 45888886
Q ss_pred CCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE-------------EEecCCCCCCchhhhccccCCCceeEEec
Q 036439 149 MTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC-------------IAGLGHAPISLPNQLASHFGFPPKFALCL 215 (350)
Q Consensus 149 ~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc-------------IlGLg~~~~Sl~~Ql~~~~~~~~~FS~cL 215 (350)
+|+.++|.+++|+|+|++.. .++++.||| |||||+..+|+++|+.... +++||+||
T Consensus 42 -~Gs~~~G~~~~D~v~ig~~~--------~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~--~~~FS~~L 110 (299)
T cd05472 42 -DGSYTTGDLATDTLTLGSSD--------VVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSY--GGVFSYCL 110 (299)
T ss_pred -CCceEEEEEEEEEEEeCCCC--------ccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhh--cCceEEEc
Confidence 77778999999999998641 355667777 9999999999999987653 48999999
Q ss_pred CCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCC--CccEEEEEeEEEEcCe----------------------
Q 036439 216 PSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISP--EGQYYITLTSIRINNK---------------------- 271 (350)
Q Consensus 216 ~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~--~~~y~i~l~~I~V~g~---------------------- 271 (350)
++.. ...+|+|+||+.|. . .+++.||||+.++ +.+|+|+|++|+|+++
T Consensus 111 ~~~~-~~~~G~l~fGg~d~-----~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~ 182 (299)
T cd05472 111 PDRS-SSSSGYLSFGAAAS-----V--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVI 182 (299)
T ss_pred cCCC-CCCCceEEeCCccc-----c--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcc
Confidence 8743 13479999999985 1 6899999998764 3689999999999864
Q ss_pred ----------------------------------------------------e-ceEEEEccCccEEEe-CCCceEEEEE
Q 036439 272 ----------------------------------------------------Q-NVKWTIIGANSMVQA-RSGVTCLAFV 297 (350)
Q Consensus 272 ----------------------------------------------------~-g~~~~i~g~ny~v~~-~~~~~Clg~~ 297 (350)
+ +++|+|++++|+++. ..+..|+++.
T Consensus 183 ~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~ 262 (299)
T cd05472 183 TRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFA 262 (299)
T ss_pred eecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEe
Confidence 1 456778888999843 3467899988
Q ss_pred eCCCCCCCceEEcHHHhcceEEEEeCCCCEEEeeecCCCcCCCC
Q 036439 298 NGGVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSSSLLFRRTSC 341 (350)
Q Consensus 298 ~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl~~~~~~C 341 (350)
.... ..+.||||+.|||++|+|||++++||||| +++|
T Consensus 263 ~~~~-~~~~~ilG~~fl~~~~vvfD~~~~~igfa------~~~C 299 (299)
T cd05472 263 GTSD-DGGLSIIGNVQQQTFRVVYDVAGGRIGFA------PGGC 299 (299)
T ss_pred CCCC-CCCCEEEchHHccceEEEEECCCCEEeEe------cCCC
Confidence 6532 24579999999999999999999999999 4777
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.2e-41 Score=323.02 Aligned_cols=242 Identities=21% Similarity=0.351 Sum_probs=183.1
Q ss_pred ceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCC-------------CCCcccCCCCCChhccccCCCCCCCCCCCCCC
Q 036439 68 HLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSY-------------LSSTYHAPLCHSTQCARANTPYCHTCNSTPRP 134 (350)
Q Consensus 68 ~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~-------------~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~ 134 (350)
++|+++|.||||+|++.|+|||||+++||+|.+|. +|+|++.+.|++..|.. + .
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~--------~ 68 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----C--------L 68 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc-----c--------C
Confidence 58999999999999999999999999999988762 78999999999988842 1 1
Q ss_pred CCCCCceeeeEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE---------------EEecCCCCCC-ch
Q 036439 135 GCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC---------------IAGLGHAPIS-LP 198 (350)
Q Consensus 135 ~c~~~~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc---------------IlGLg~~~~S-l~ 198 (350)
.|.++.|.|.+.|+ +|+.+.|.+++|+|+|++....+.. ....++.||| |||||+...+ +.
T Consensus 69 ~~~~~~~~~~i~Y~-~gs~~~G~~~~D~v~lg~~~~~~~~--~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~ 145 (326)
T cd06096 69 SCLNNKCEYSISYS-EGSSISGFYFSDFVSFESYLNSNSE--KESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLP 145 (326)
T ss_pred cCCCCcCcEEEEEC-CCCceeeEEEEEEEEeccCCCCccc--cccccEEeccCccccCcccccccceEEEccCCcccccC
Confidence 35667799999986 7778999999999999875432100 0111345665 9999998643 22
Q ss_pred hh---hccc-cCC--CceeEEecCCCCCCCCCceEEEcCCCCCcCC-----ccccCCCeeEEecccCCCccEEEEEeEEE
Q 036439 199 NQ---LASH-FGF--PPKFALCLPSSASNVPNGAIFFGDGPYLMLP-----GIDISSQLRFTPLTISPEGQYYITLTSIR 267 (350)
Q Consensus 199 ~Q---l~~~-~~~--~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p-----~~~~~g~l~ytPl~~~~~~~y~i~l~~I~ 267 (350)
.+ +..+ ... +++||+||++. +|+|+||++|..... +....+++.|+|+... .+|+|++++|+
T Consensus 146 ~~~~~l~~~~~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~--~~y~v~l~~i~ 218 (326)
T cd06096 146 TPIILLFTKRPKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK--YYYYVKLEGLS 218 (326)
T ss_pred chhHHHHHhcccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCC--ceEEEEEEEEE
Confidence 21 1111 112 38999999864 699999999753210 0111278999999876 79999999999
Q ss_pred EcCe------------------------------------------e-ceEEEEccCccEEEeCCCceEEEEEeCCCCCC
Q 036439 268 INNK------------------------------------------Q-NVKWTIIGANSMVQARSGVTCLAFVNGGVRPR 304 (350)
Q Consensus 268 V~g~------------------------------------------~-g~~~~i~g~ny~v~~~~~~~Clg~~~~~~~~~ 304 (350)
|+++ + |+.|++++++|+++..+...|+++... .
T Consensus 219 vg~~~~~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~P~i~~~f~~g~~~~i~p~~y~~~~~~~~c~~~~~~~----~ 294 (326)
T cd06096 219 VYGTTSNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFFPTITIIFENNLKIDWKPSSYLYKKESFWCKGGEKSV----S 294 (326)
T ss_pred EcccccceecccCCCEEEeCCCCcccCCHHHHHHHHhhcCcEEEEEcCCcEEEECHHHhccccCCceEEEEEecC----C
Confidence 9864 3 678888999999876554455565543 2
Q ss_pred CceEEcHHHhcceEEEEeCCCCEEEeeecCCCcCCCCC
Q 036439 305 SSIIIGSHQLQDNLVQFALAGSRLGFSSSLLFRRTSCS 342 (350)
Q Consensus 305 ~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl~~~~~~Cs 342 (350)
..||||+.|||++|++||++++||||| +++|.
T Consensus 295 ~~~ILG~~flr~~y~vFD~~~~riGfa------~~~C~ 326 (326)
T cd06096 295 NKPILGASFFKNKQIIFDLDNNRIGFV------ESNCP 326 (326)
T ss_pred CceEEChHHhcCcEEEEECcCCEEeeE------cCCCC
Confidence 479999999999999999999999999 58884
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=6.1e-40 Score=316.46 Aligned_cols=236 Identities=17% Similarity=0.273 Sum_probs=180.8
Q ss_pred CCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeee
Q 036439 65 QATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLM 144 (350)
Q Consensus 65 ~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~ 144 (350)
..+.+|+++|.||||+|+++|+|||||+++||+|..|.. | +..|..++.|++.. |++++ ...|.|.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~C~~~~~y~~~~-SsT~~----~~~~~~~ 67 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSL--------L-DIACWLHHKYNSSK-SSTYV----KNGTEFA 67 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCC--------C-CccccCcCcCCccc-Cccee----eCCcEEE
Confidence 357899999999999999999999999999999977631 1 24577677777764 22332 3357899
Q ss_pred EecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCCch------hhhc
Q 036439 145 ATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPISLP------NQLA 202 (350)
Q Consensus 145 ~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~Sl~------~Ql~ 202 (350)
+.|+ +| +++|.+++|+|+|++.. ++++.||| |||||++.++.. .+|.
T Consensus 68 i~Yg-~G-~~~G~~~~D~v~~g~~~---------~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 136 (325)
T cd05490 68 IQYG-SG-SLSGYLSQDTVSIGGLQ---------VEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIM 136 (325)
T ss_pred EEEC-Cc-EEEEEEeeeEEEECCEE---------EcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHH
Confidence 9974 44 68999999999998752 33444444 999999877643 3454
Q ss_pred cccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe----------
Q 036439 203 SHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK---------- 271 (350)
Q Consensus 203 ~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~---------- 271 (350)
++..+ +++||+||++..+...+|+|+||++|. .+|.+++.|+|+... .+|+|++++|+|+++
T Consensus 137 ~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~-----~~~~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~a 209 (325)
T cd05490 137 AQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDP-----KYYTGDLHYVNVTRK--AYWQIHMDQVDVGSGLTLCKGGCEA 209 (325)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCCEEEECccCH-----HHcCCceEEEEcCcc--eEEEEEeeEEEECCeeeecCCCCEE
Confidence 43322 589999998653223579999999875 457899999999765 799999999999864
Q ss_pred --------------------------------------------------eceEEEEccCccEEEeCC--CceEE-EEEe
Q 036439 272 --------------------------------------------------QNVKWTIIGANSMVQARS--GVTCL-AFVN 298 (350)
Q Consensus 272 --------------------------------------------------~g~~~~i~g~ny~v~~~~--~~~Cl-g~~~ 298 (350)
+|+.|+|++++|+++... ...|+ +|..
T Consensus 210 iiDSGTt~~~~p~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~ 289 (325)
T cd05490 210 IVDTGTSLITGPVEEVRALQKAIGAVPLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMG 289 (325)
T ss_pred EECCCCccccCCHHHHHHHHHHhCCccccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEE
Confidence 466788899999987643 35798 5665
Q ss_pred CCC--CCCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 299 GGV--RPRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 299 ~~~--~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
.+. ...+.||||+.|||++|+|||++++|||||+
T Consensus 290 ~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 290 LDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 332 1245899999999999999999999999984
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6.2e-40 Score=331.02 Aligned_cols=245 Identities=15% Similarity=0.248 Sum_probs=184.4
Q ss_pred eEeeeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCC
Q 036439 57 LVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGC 136 (350)
Q Consensus 57 ~~~Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c 136 (350)
...|| .+..+.+|+++|+||||||+|+|+|||||+++||+|.. |.+..|..++.|+++. |++++..+
T Consensus 109 ~~~~l-~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~-----------C~~~~C~~~~~yd~s~-SSTy~~~~ 175 (482)
T PTZ00165 109 LQQDL-LNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKE-----------CKSGGCAPHRKFDPKK-SSTYTKLK 175 (482)
T ss_pred cceec-ccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchh-----------cCcccccccCCCCccc-cCCcEecC
Confidence 34555 34578999999999999999999999999999999965 5566788888888875 44554322
Q ss_pred CCC-ceeeeEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCCc--
Q 036439 137 HNN-TCGLMATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPISL-- 197 (350)
Q Consensus 137 ~~~-~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~Sl-- 197 (350)
.+. ...+.+.| +.++..|.+++|+|+|++. .++++.||| |||||++.++.
T Consensus 176 ~~~~~~~~~i~Y--GsGs~~G~l~~DtV~ig~l---------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s 244 (482)
T PTZ00165 176 LGDESAETYIQY--GTGECVLALGKDTVKIGGL---------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKE 244 (482)
T ss_pred CCCccceEEEEe--CCCcEEEEEEEEEEEECCE---------EEccEEEEEEEeccccccccccccceeecCCCcccccc
Confidence 222 12466775 5567889999999999875 344444444 99999987632
Q ss_pred -------hhhhccccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCcccc--CCCeeEEecccCCCccEEEEEeEEE
Q 036439 198 -------PNQLASHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDI--SSQLRFTPLTISPEGQYYITLTSIR 267 (350)
Q Consensus 198 -------~~Ql~~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~--~g~l~ytPl~~~~~~~y~i~l~~I~ 267 (350)
..++.++..+ +++||+||++.. ..+|+|+|||.|.. .+ .+++.|+|++.. .+|+|.+++|+
T Consensus 245 ~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~fGGiD~~-----~~~~~g~i~~~Pv~~~--~yW~i~l~~i~ 315 (482)
T PTZ00165 245 SKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSISFGSADPK-----YTLEGHKIWWFPVIST--DYWEIEVVDIL 315 (482)
T ss_pred cCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEEeCCcCHH-----HcCCCCceEEEEcccc--ceEEEEeCeEE
Confidence 2344443222 589999998754 45799999999852 23 468999999876 89999999999
Q ss_pred EcCe-----------------------------------------------------ec-----eEEEEccCccEEEe--
Q 036439 268 INNK-----------------------------------------------------QN-----VKWTIIGANSMVQA-- 287 (350)
Q Consensus 268 V~g~-----------------------------------------------------~g-----~~~~i~g~ny~v~~-- 287 (350)
|+++ ++ ++|.+++++|++++
T Consensus 316 vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~ 395 (482)
T PTZ00165 316 IDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLEEDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGD 395 (482)
T ss_pred ECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCcccccccccCCceEEEECCCCCceEEEEEchHHeeeeccc
Confidence 9973 22 26788889999874
Q ss_pred -C-CCceEE-EEEeCCCC--CCCceEEcHHHhcceEEEEeCCCCEEEeeecC
Q 036439 288 -R-SGVTCL-AFVNGGVR--PRSSIIIGSHQLQDNLVQFALAGSRLGFSSSL 334 (350)
Q Consensus 288 -~-~~~~Cl-g~~~~~~~--~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl 334 (350)
. .+..|+ +|...+.. .++.||||++|||++|+|||++++|||||++.
T Consensus 396 ~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 396 SEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred CCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 1 246897 78765431 24689999999999999999999999999643
No 9
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.2e-40 Score=308.48 Aligned_cols=206 Identities=28% Similarity=0.551 Sum_probs=174.7
Q ss_pred eEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEecC
Q 036439 69 LFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNP 148 (350)
Q Consensus 69 ~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y~ 148 (350)
+|+++|.||||+|+++|+|||||+++||+| |.|.+.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~------------------------------------------~~~~~~Y~ 38 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------------------CSYEYSYG 38 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC------------------------------------------CceEeEeC
Confidence 699999999999999999999999999987 23677775
Q ss_pred CCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE--------------EEecCCCCCCchhhhccccCCCceeEEe
Q 036439 149 MTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC--------------IAGLGHAPISLPNQLASHFGFPPKFALC 214 (350)
Q Consensus 149 ~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc--------------IlGLg~~~~Sl~~Ql~~~~~~~~~FS~c 214 (350)
+++.++|.+++|+|+|++.+ ..++++.||| |||||+..+|+++|+..+. ++||+|
T Consensus 39 -dg~~~~G~~~~D~v~~g~~~-------~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~ 107 (265)
T cd05476 39 -DGSSTSGVLATETFTFGDSS-------VSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYC 107 (265)
T ss_pred -CCceeeeeEEEEEEEecCCC-------CccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc---CeeEEE
Confidence 78899999999999999752 1355667777 9999999999999997643 799999
Q ss_pred cCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCC--CccEEEEEeEEEEcCe---------------------
Q 036439 215 LPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISP--EGQYYITLTSIRINNK--------------------- 271 (350)
Q Consensus 215 L~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~--~~~y~i~l~~I~V~g~--------------------- 271 (350)
|++......+|+|+||+.|. . +.+++.|+|++.++ +.+|+|+|++|+|+++
T Consensus 108 l~~~~~~~~~G~l~fGg~d~-----~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~ 181 (265)
T cd05476 108 LVPHDDTGGSSPLILGDAAD-----L-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTII 181 (265)
T ss_pred ccCCCCCCCCCeEEECCccc-----c-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEE
Confidence 99753225689999999985 2 67899999998863 4799999999999863
Q ss_pred ---------------------e-ceEEEEccCccEEEeCCCceEEEEEeCCCCCCCceEEcHHHhcceEEEEeCCCCEEE
Q 036439 272 ---------------------Q-NVKWTIIGANSMVQARSGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQFALAGSRLG 329 (350)
Q Consensus 272 ---------------------~-g~~~~i~g~ny~v~~~~~~~Clg~~~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIG 329 (350)
+ +++|.+++++|+++..++..|++++... ..+.||||+.|||++|++||++++|||
T Consensus 182 DTGTs~~~lp~~~~P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~--~~~~~ilG~~fl~~~~~vFD~~~~~iG 259 (265)
T cd05476 182 DSGTTLTYLPDPAYPDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSS--SGGVSILGNIQQQNFLVEYDLENSRLG 259 (265)
T ss_pred eCCCcceEcCccccCCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCC--CCCcEEEChhhcccEEEEEECCCCEEe
Confidence 3 6788899999999776678999998763 246899999999999999999999999
Q ss_pred eeecCCCcCCCC
Q 036439 330 FSSSLLFRRTSC 341 (350)
Q Consensus 330 Fa~sl~~~~~~C 341 (350)
|| +++|
T Consensus 260 fa------~~~C 265 (265)
T cd05476 260 FA------PADC 265 (265)
T ss_pred ee------cCCC
Confidence 99 4777
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.4e-39 Score=311.65 Aligned_cols=239 Identities=18% Similarity=0.293 Sum_probs=182.0
Q ss_pred eeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCC
Q 036439 60 PIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNN 139 (350)
Q Consensus 60 Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~ 139 (350)
|| .+..+.+|+++|.||||+|+++|+|||||+++||+|..|.. +..|..++.|++.. |++.+ +.
T Consensus 2 ~l-~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~----------~~~C~~~~~y~~~~-SsT~~----~~ 65 (317)
T cd06098 2 AL-KNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF----------SIACYFHSKYKSSK-SSTYK----KN 65 (317)
T ss_pred cc-cccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC----------CccccccCcCCccc-CCCcc----cC
Confidence 44 34568899999999999999999999999999999976631 34577777788764 23332 23
Q ss_pred ceeeeEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCCch-----
Q 036439 140 TCGLMATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPISLP----- 198 (350)
Q Consensus 140 ~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~Sl~----- 198 (350)
.+.+.+.| +++.++|.+++|+|+|++. .++++.|+| |||||++.++..
T Consensus 66 ~~~~~i~Y--g~G~~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 134 (317)
T cd06098 66 GTSASIQY--GTGSISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPV 134 (317)
T ss_pred CCEEEEEc--CCceEEEEEEeeEEEECCE---------EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCH
Confidence 35678886 4556899999999999875 344444443 999999876643
Q ss_pred -hhhccccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe-----
Q 036439 199 -NQLASHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK----- 271 (350)
Q Consensus 199 -~Ql~~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~----- 271 (350)
.+|.++..+ +++||+||++......+|+|+||++|. .+|.|+++|+|++.. .+|.|.+++|+|+++
T Consensus 135 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~ 207 (317)
T cd06098 135 WYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDP-----KHFKGEHTYVPVTRK--GYWQFEMGDVLIGGKSTGFC 207 (317)
T ss_pred HHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccCh-----hhcccceEEEecCcC--cEEEEEeCeEEECCEEeeec
Confidence 244433222 579999998753224579999999985 467899999999765 799999999999875
Q ss_pred --------------------------------------------eceEEEEccCccEEEeCC--CceEE-EEEeCCC--C
Q 036439 272 --------------------------------------------QNVKWTIIGANSMVQARS--GVTCL-AFVNGGV--R 302 (350)
Q Consensus 272 --------------------------------------------~g~~~~i~g~ny~v~~~~--~~~Cl-g~~~~~~--~ 302 (350)
+|+.|+|++++|+++..+ ...|+ +|...+. .
T Consensus 208 ~~~~~aivDTGTs~~~lP~~~~~~i~~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~ 287 (317)
T cd06098 208 AGGCAAIADSGTSLLAGPTTIVTQINSAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPP 287 (317)
T ss_pred CCCcEEEEecCCcceeCCHHHHHhhhccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCC
Confidence 567788999999987653 35898 5654331 1
Q ss_pred CCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 303 PRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 303 ~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
.++.||||+.|||++|+|||++++|||||+
T Consensus 288 ~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 288 RGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 245899999999999999999999999984
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.4e-39 Score=312.87 Aligned_cols=229 Identities=19% Similarity=0.338 Sum_probs=177.2
Q ss_pred EEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEecCC
Q 036439 70 FITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNPM 149 (350)
Q Consensus 70 Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y~~ 149 (350)
|+++|.||||+|+++|+|||||+++||+|.. |.+..|..++.|++.. |+++ .+..|.|.+.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~-----------C~~~~C~~~~~y~~~~-SsT~----~~~~~~~~i~Yg- 63 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIY-----------CTSQACTKHNRFQPSE-SSTY----VSNGEAFSIQYG- 63 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCC-----------CCCcccCccceECCCC-Cccc----ccCCcEEEEEeC-
Confidence 8999999999999999999999999999965 5556787777777764 2222 344688999974
Q ss_pred CCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCCc------hhhhccccCC
Q 036439 150 THQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPISL------PNQLASHFGF 207 (350)
Q Consensus 150 ~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~Sl------~~Ql~~~~~~ 207 (350)
+ +.+.|.+++|+|+|++. .++++.||| |||||++.++. ..+|.++..+
T Consensus 64 ~-g~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 64 T-GSLTGIIGIDQVTVEGI---------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred C-cEEEEEeeecEEEECCE---------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 4 46899999999999875 233444444 99999987664 3344443322
Q ss_pred -CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe---------------
Q 036439 208 -PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK--------------- 271 (350)
Q Consensus 208 -~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~--------------- 271 (350)
+++||+||++......+|+|+|||+|. .+|.+++.|+|+... ++|.|++++|+|+++
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~-----~~~~g~l~~~pi~~~--~~w~v~l~~i~v~g~~~~~~~~~~aiiDTG 206 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDT-----SRFSGQLNWVPVTVQ--GYWQIQLDNIQVGGTVIFCSDGCQAIVDTG 206 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCH-----HHcccceEEEECCCc--eEEEEEeeEEEEecceEecCCCCEEEECCC
Confidence 479999998753224579999999985 467899999999875 899999999999875
Q ss_pred --------------------------------------------eceEEEEccCccEEEeC--CCceEE-EEEeCCC--C
Q 036439 272 --------------------------------------------QNVKWTIIGANSMVQAR--SGVTCL-AFVNGGV--R 302 (350)
Q Consensus 272 --------------------------------------------~g~~~~i~g~ny~v~~~--~~~~Cl-g~~~~~~--~ 302 (350)
+|+.|+|++++|++... .+..|+ +|..... .
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~~~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 286 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGATATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPP 286 (316)
T ss_pred cchhhcCHHHHHHHHHHhCCcccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCC
Confidence 46677888899998652 346898 5655332 1
Q ss_pred CCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 303 PRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 303 ~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
..+.||||+.|||++|+|||++++|||||+
T Consensus 287 ~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 287 AGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 245799999999999999999999999984
No 12
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=7.5e-39 Score=307.98 Aligned_cols=232 Identities=19% Similarity=0.280 Sum_probs=182.1
Q ss_pred eeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCC
Q 036439 60 PIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNN 139 (350)
Q Consensus 60 Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~ 139 (350)
|++. ..+.+|+++|.||||+|++.|+|||||+++||+|..| ....|..++.|++.. |++. ...
T Consensus 2 ~l~n-~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C-----------~~~~c~~~~~f~~~~-Sst~----~~~ 64 (317)
T cd05478 2 PLTN-YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYC-----------SSQACSNHNRFNPRQ-SSTY----QST 64 (317)
T ss_pred cccc-ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCC-----------CcccccccCcCCCCC-Ccce----eeC
Confidence 4433 3488999999999999999999999999999999654 445677677777654 2222 233
Q ss_pred ceeeeEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCC------c
Q 036439 140 TCGLMATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPIS------L 197 (350)
Q Consensus 140 ~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~S------l 197 (350)
.|.|.+.|+ +| +++|.+++|+|+|++. .++++.||| |||||++.++ +
T Consensus 65 ~~~~~~~yg-~g-s~~G~~~~D~v~ig~~---------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 133 (317)
T cd05478 65 GQPLSIQYG-TG-SMTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPV 133 (317)
T ss_pred CcEEEEEEC-Cc-eEEEEEeeeEEEECCE---------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCH
Confidence 478999874 44 5899999999999875 355566665 9999987654 4
Q ss_pred hhhhccccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe-----
Q 036439 198 PNQLASHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK----- 271 (350)
Q Consensus 198 ~~Ql~~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~----- 271 (350)
..||.++..+ +++||+||++.. ..+|+|+|||+|. .+|.+++.|+|+... .+|.|.+++|+||++
T Consensus 134 ~~~L~~~g~i~~~~FS~~L~~~~--~~~g~l~~Gg~d~-----~~~~g~l~~~p~~~~--~~w~v~l~~v~v~g~~~~~~ 204 (317)
T cd05478 134 FDNMMSQGLVSQDLFSVYLSSNG--QQGSVVTFGGIDP-----SYYTGSLNWVPVTAE--TYWQITVDSVTINGQVVACS 204 (317)
T ss_pred HHHHHhCCCCCCCEEEEEeCCCC--CCCeEEEEcccCH-----HHccCceEEEECCCC--cEEEEEeeEEEECCEEEccC
Confidence 5666654433 589999999864 4579999999975 457899999999765 799999999999986
Q ss_pred -------------------------------------------------------eceEEEEccCccEEEeCCCceEEE-
Q 036439 272 -------------------------------------------------------QNVKWTIIGANSMVQARSGVTCLA- 295 (350)
Q Consensus 272 -------------------------------------------------------~g~~~~i~g~ny~v~~~~~~~Clg- 295 (350)
+|+.|+|++++|+.+. +..|++
T Consensus 205 ~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~~~ 282 (317)
T cd05478 205 GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD--QGSCTSG 282 (317)
T ss_pred CCCEEEECCCchhhhCCHHHHHHHHHHhCCccccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC--CCEEeEE
Confidence 4667788888888764 458984
Q ss_pred EEeCCCCCCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 296 FVNGGVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 296 ~~~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
|...+. .+.||||+.|||++|++||++++|||||+
T Consensus 283 ~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 283 FQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 655432 35799999999999999999999999984
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.3e-38 Score=306.81 Aligned_cols=235 Identities=19% Similarity=0.298 Sum_probs=180.5
Q ss_pred eeeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCC
Q 036439 59 LPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHN 138 (350)
Q Consensus 59 ~Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~ 138 (350)
+||+. ..+.+|+++|.||||+|++.|+|||||+++||+|.+ |.+..|..++.|+|.. ++++ ..
T Consensus 1 ~~l~n-~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~-----------C~~~~C~~~~~y~~~~-Sst~----~~ 63 (320)
T cd05488 1 VPLTN-YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVK-----------CGSIACFLHSKYDSSA-SSTY----KA 63 (320)
T ss_pred Ccccc-cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCC-----------CCCcccCCcceECCCC-Ccce----ee
Confidence 35533 457899999999999999999999999999999965 5556677666777653 2332 33
Q ss_pred CceeeeEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCCchhh--
Q 036439 139 NTCGLMATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPISLPNQ-- 200 (350)
Q Consensus 139 ~~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~Sl~~Q-- 200 (350)
+.|.|.+.|+ + ++++|.+++|+|+|++.. ++++.|+| |||||++.++.+.+
T Consensus 64 ~~~~~~~~y~-~-g~~~G~~~~D~v~ig~~~---------~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (320)
T cd05488 64 NGTEFKIQYG-S-GSLEGFVSQDTLSIGDLT---------IKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVP 132 (320)
T ss_pred CCCEEEEEEC-C-ceEEEEEEEeEEEECCEE---------ECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCC
Confidence 4688999974 4 458999999999998753 33334433 99999988776543
Q ss_pred ----hccccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe----
Q 036439 201 ----LASHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK---- 271 (350)
Q Consensus 201 ----l~~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~---- 271 (350)
+.++..+ +++||+||++.. ..+|+|+||++|. .++.+++.|+|++.. .+|.|++++|+||++
T Consensus 133 ~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~d~-----~~~~g~l~~~p~~~~--~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 133 PFYNMINQGLLDEPVFSFYLGSSE--EDGGEATFGGIDE-----SRFTGKITWLPVRRK--AYWEVELEKIGLGDEELEL 203 (320)
T ss_pred HHHHHHhcCCCCCCEEEEEecCCC--CCCcEEEECCcCH-----HHcCCceEEEeCCcC--cEEEEEeCeEEECCEEecc
Confidence 2222222 589999999864 4579999999975 457899999999865 799999999999976
Q ss_pred -------------------------------------------------------eceEEEEccCccEEEeCCCceEEE-
Q 036439 272 -------------------------------------------------------QNVKWTIIGANSMVQARSGVTCLA- 295 (350)
Q Consensus 272 -------------------------------------------------------~g~~~~i~g~ny~v~~~~~~~Clg- 295 (350)
+|++|+|++++|+++.. ..|++
T Consensus 204 ~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~--g~C~~~ 281 (320)
T cd05488 204 ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKKSWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS--GSCISA 281 (320)
T ss_pred CCCeEEEcCCcccccCCHHHHHHHHHHhCCccccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC--CeEEEE
Confidence 46678889999997543 47995
Q ss_pred EEeCCC--CCCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 296 FVNGGV--RPRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 296 ~~~~~~--~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
+..... ...+.||||+.|||++|++||++++|||||+
T Consensus 282 ~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 282 FTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 444321 1234799999999999999999999999984
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.6e-38 Score=305.01 Aligned_cols=236 Identities=18% Similarity=0.321 Sum_probs=181.4
Q ss_pred CCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceee
Q 036439 64 DQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGL 143 (350)
Q Consensus 64 d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~ 143 (350)
+..+.+|+++|.||||+|++.|+|||||+++||+|..|.. | ...|..++.|+|.. |++ |....|.|
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~~-Sst----~~~~~~~~ 71 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSW--------T-NIACLLHNKYDSTK-SST----YKKNGTEF 71 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCC--------C-CccccCCCeECCcC-CCC----eEECCeEE
Confidence 3567999999999999999999999999999999987621 1 23566566677654 222 33456899
Q ss_pred eEecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCCch------hhh
Q 036439 144 MATNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPISLP------NQL 201 (350)
Q Consensus 144 ~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~Sl~------~Ql 201 (350)
.+.|+ +| +++|.+++|+|+|++.. ++++.||| |||||++.++.. .|+
T Consensus 72 ~i~Y~-~g-~~~G~~~~D~v~ig~~~---------~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l 140 (329)
T cd05485 72 AIQYG-SG-SLSGFLSTDTVSVGGVS---------VKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNM 140 (329)
T ss_pred EEEEC-Cc-eEEEEEecCcEEECCEE---------ECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHH
Confidence 99974 54 58999999999998753 33333433 999999877642 455
Q ss_pred ccccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe---------
Q 036439 202 ASHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK--------- 271 (350)
Q Consensus 202 ~~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~--------- 271 (350)
.++..+ +++||+||++..+...+|+|+||+.|. .++.+++.|+|+... .+|.|.+++|+|+++
T Consensus 141 ~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~p~~~~--~~~~v~~~~i~v~~~~~~~~~~~~ 213 (329)
T cd05485 141 VNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDP-----KHYTGNFTYLPVTRK--GYWQFKMDSVSVGEGEFCSGGCQA 213 (329)
T ss_pred HhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCH-----HHcccceEEEEcCCc--eEEEEEeeEEEECCeeecCCCcEE
Confidence 544333 589999998754323579999999975 457799999999765 899999999999875
Q ss_pred --------------------------------------------------eceEEEEccCccEEEeCC--CceEE-EEEe
Q 036439 272 --------------------------------------------------QNVKWTIIGANSMVQARS--GVTCL-AFVN 298 (350)
Q Consensus 272 --------------------------------------------------~g~~~~i~g~ny~v~~~~--~~~Cl-g~~~ 298 (350)
+++.|+|++++|++++.+ ...|+ +|+.
T Consensus 214 iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~ 293 (329)
T cd05485 214 IADTGTSLIAGPVDEIEKLNNAIGAKPIIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMG 293 (329)
T ss_pred EEccCCcceeCCHHHHHHHHHHhCCccccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEE
Confidence 466788899999987653 36898 5775
Q ss_pred CCC--CCCCceEEcHHHhcceEEEEeCCCCEEEee
Q 036439 299 GGV--RPRSSIIIGSHQLQDNLVQFALAGSRLGFS 331 (350)
Q Consensus 299 ~~~--~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa 331 (350)
... ...+.||||+.|||++|+|||++++|||||
T Consensus 294 ~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a 328 (329)
T cd05485 294 IDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFA 328 (329)
T ss_pred CcCCCCCCCeEEEchHHhccceEEEeCCCCEEeec
Confidence 432 123579999999999999999999999998
No 15
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=9.6e-38 Score=300.30 Aligned_cols=229 Identities=17% Similarity=0.279 Sum_probs=179.5
Q ss_pred CceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEe
Q 036439 67 THLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMAT 146 (350)
Q Consensus 67 ~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~ 146 (350)
+.+|+++|.||||||++.|+|||||+++||+|.. |....|..++.|++.. |+++ .+..|.|.+.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~-----------C~~~~C~~~~~f~~~~-SsT~----~~~~~~~~~~ 64 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVL-----------CQSQACTNHTKFNPSQ-SSTY----STNGETFSLQ 64 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCC-----------CCCccccccCCCCccc-CCCc----eECCcEEEEE
Confidence 4689999999999999999999999999999965 5555687777787764 2232 3456899999
Q ss_pred cCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCC------Cchhhhccc
Q 036439 147 NPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPI------SLPNQLASH 204 (350)
Q Consensus 147 y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~------Sl~~Ql~~~ 204 (350)
|+ +| ++.|.+++|+|+|++. .++++.||| |||||++.+ +++.||.++
T Consensus 65 Yg-~G-s~~G~~~~D~i~~g~~---------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 65 YG-SG-SLTGIFGYDTVTVQGI---------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred EC-Cc-EEEEEEEeeEEEECCE---------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 74 54 5799999999999875 455556665 999998643 455677654
Q ss_pred cCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe------------
Q 036439 205 FGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK------------ 271 (350)
Q Consensus 205 ~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~------------ 271 (350)
..+ +++||+||++.. ...+|+|+||++|. .++.+++.|+|+... .+|+|++++|+|+++
T Consensus 134 g~i~~~~FS~~L~~~~-~~~~g~l~fGg~d~-----~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~~~~~~i 205 (318)
T cd05477 134 NLLQAPIFSFYLSGQQ-GQQGGELVFGGVDN-----NLYTGQIYWTPVTSE--TYWQIGIQGFQINGQATGWCSQGCQAI 205 (318)
T ss_pred CCcCCCEEEEEEcCCC-CCCCCEEEEcccCH-----HHcCCceEEEecCCc--eEEEEEeeEEEECCEEecccCCCceee
Confidence 333 589999998753 13579999999875 467899999999875 799999999999875
Q ss_pred -------------------------------------------------eceEEEEccCccEEEeCCCceEE-EEEeCCC
Q 036439 272 -------------------------------------------------QNVKWTIIGANSMVQARSGVTCL-AFVNGGV 301 (350)
Q Consensus 272 -------------------------------------------------~g~~~~i~g~ny~v~~~~~~~Cl-g~~~~~~ 301 (350)
+++++++++++|+.+. +..|+ +|.+...
T Consensus 206 iDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~~~~~ 283 (318)
T cd05477 206 VDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIEPTYL 283 (318)
T ss_pred ECCCCccEECCHHHHHHHHHHhCCccccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEEeccc
Confidence 4566777888888764 35797 7765321
Q ss_pred ---CCCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 302 ---RPRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 302 ---~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
.....||||+.|||++|++||++++|||||+
T Consensus 284 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 284 PSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred CCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 1235799999999999999999999999996
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.5e-37 Score=309.52 Aligned_cols=248 Identities=15% Similarity=0.231 Sum_probs=181.4
Q ss_pred eEeeeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCC
Q 036439 57 LVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGC 136 (350)
Q Consensus 57 ~~~Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c 136 (350)
-.+|+. |..+.+|+++|.||||+|+++|+|||||+++||+|+. |.+..|..++.|+|.. |+++
T Consensus 127 ~~~~l~-d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~-----------C~~~~C~~~~~yd~s~-SsT~---- 189 (450)
T PTZ00013 127 DVIELD-DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKK-----------CDSIGCSIKNLYDSSK-SKSY---- 189 (450)
T ss_pred Cceeee-ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEeccc-----------CCccccccCCCccCcc-Cccc----
Confidence 345553 3457799999999999999999999999999999965 4556788778888865 2333
Q ss_pred CCCceeeeEecCCCCceEEEEEEEEEEEecccCCCC-CCCceeec-------CeeeEEEEecCCCCCCc------hhhhc
Q 036439 137 HNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKGSK-PGPLVRVP-------RFLFACIAGLGHAPISL------PNQLA 202 (350)
Q Consensus 137 ~~~~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~-~g~~~~v~-------~~~FgcIlGLg~~~~Sl------~~Ql~ 202 (350)
....|.+.+.|+ + ++++|.+++|+|+|++..... ++...... ...+..|||||++.++. +.+|.
T Consensus 190 ~~~~~~~~i~YG-~-Gsv~G~~~~Dtv~iG~~~~~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~ 267 (450)
T PTZ00013 190 EKDGTKVDITYG-S-GTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELK 267 (450)
T ss_pred ccCCcEEEEEEC-C-ceEEEEEEEEEEEECCEEEccEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHH
Confidence 334578999974 4 469999999999999763221 11110100 01122299999987653 34565
Q ss_pred cccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe----------
Q 036439 203 SHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK---------- 271 (350)
Q Consensus 203 ~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~---------- 271 (350)
.+..+ +++||+||++.. ..+|+|+|||+|. .+|.|++.|+|+... .+|.|+++ +.++..
T Consensus 268 ~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~-----~~y~G~L~y~pv~~~--~yW~I~l~-v~~G~~~~~~~~aIlD 337 (450)
T PTZ00013 268 NQNKIDNALFTFYLPVHD--VHAGYLTIGGIEE-----KFYEGNITYEKLNHD--LYWQIDLD-VHFGKQTMQKANVIVD 337 (450)
T ss_pred hccCcCCcEEEEEecCCC--CCCCEEEECCcCc-----cccccceEEEEcCcC--ceEEEEEE-EEECceeccccceEEC
Confidence 44333 578999998753 4589999999985 467899999999764 79999998 666532
Q ss_pred -----------------------------------------------eceEEEEccCccEEEeC--CCceEE-EEEeCCC
Q 036439 272 -----------------------------------------------QNVKWTIIGANSMVQAR--SGVTCL-AFVNGGV 301 (350)
Q Consensus 272 -----------------------------------------------~g~~~~i~g~ny~v~~~--~~~~Cl-g~~~~~~ 301 (350)
+|..++|++++|+.+.. ++..|+ ++.+.+.
T Consensus 338 SGTSli~lP~~~~~~i~~~l~~~~~~~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~ 417 (450)
T PTZ00013 338 SGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDI 417 (450)
T ss_pred CCCccccCCHHHHHHHHHHhCCeecCCCCeEEeecCCCCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECCC
Confidence 34567788888986532 246898 6665432
Q ss_pred CCCCceEEcHHHhcceEEEEeCCCCEEEeeecC
Q 036439 302 RPRSSIIIGSHQLQDNLVQFALAGSRLGFSSSL 334 (350)
Q Consensus 302 ~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl 334 (350)
..+.||||++|||++|+|||++++|||||+++
T Consensus 418 -~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 418 -DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred -CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 23579999999999999999999999999754
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.6e-37 Score=309.79 Aligned_cols=250 Identities=15% Similarity=0.225 Sum_probs=183.0
Q ss_pred CceEeeeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCC
Q 036439 55 NKLVLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRP 134 (350)
Q Consensus 55 ~~~~~Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~ 134 (350)
....+|+. |..+.+|+++|.||||+|+++|+|||||+++||+|.. |.+..|..++.|++.. |++
T Consensus 126 ~~~~v~L~-n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~-----------C~~~~C~~~~~yd~s~-SsT--- 189 (453)
T PTZ00147 126 EFDNVELK-DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIK-----------CTTEGCETKNLYDSSK-SKT--- 189 (453)
T ss_pred CCCeeecc-ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecC-----------CCcccccCCCccCCcc-Ccc---
Confidence 44566773 3467899999999999999999999999999999965 4555687778888764 222
Q ss_pred CCCCCceeeeEecCCCCceEEEEEEEEEEEecccCCCC-CCCceeecCe-------eeEEEEecCCCCCCc------hhh
Q 036439 135 GCHNNTCGLMATNPMTHQAAMAELAQDVLSIQSTKGSK-PGPLVRVPRF-------LFACIAGLGHAPISL------PNQ 200 (350)
Q Consensus 135 ~c~~~~c~~~~~y~~~g~~~~G~l~~Dtv~i~~~~~~~-~g~~~~v~~~-------~FgcIlGLg~~~~Sl------~~Q 200 (350)
|....|.|.+.|+ +| +++|.+++|+|+|++..... ++......++ .+..|||||++.++. +.+
T Consensus 190 -~~~~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~~v~~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~ 266 (453)
T PTZ00147 190 -YEKDGTKVEMNYV-SG-TVSGFFSKDLVTIGNLSVPYKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVE 266 (453)
T ss_pred -eEECCCEEEEEeC-CC-CEEEEEEEEEEEECCEEEEEEEEEEEeccCcccccccccccceecccCCccccccCCCHHHH
Confidence 2334578999974 44 68999999999998753211 0100000010 112299999987664 335
Q ss_pred hccccCC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe--------
Q 036439 201 LASHFGF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK-------- 271 (350)
Q Consensus 201 l~~~~~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~-------- 271 (350)
|..+..+ +++||+||++.. ..+|+|+|||+|. .+|.|++.|+|+... .+|.|+++ +.+++.
T Consensus 267 L~~qg~I~~~vFS~~L~~~~--~~~G~L~fGGiD~-----~ky~G~l~y~pl~~~--~~W~V~l~-~~vg~~~~~~~~aI 336 (453)
T PTZ00147 267 LKNQNKIEQAVFTFYLPPED--KHKGYLTIGGIEE-----RFYEGPLTYEKLNHD--LYWQVDLD-VHFGNVSSEKANVI 336 (453)
T ss_pred HHHcCCCCccEEEEEecCCC--CCCeEEEECCcCh-----hhcCCceEEEEcCCC--ceEEEEEE-EEECCEecCceeEE
Confidence 5444333 579999998754 4579999999985 457899999999754 79999998 466543
Q ss_pred -------------------------------------------------eceEEEEccCccEEEeCC--CceEE-EEEeC
Q 036439 272 -------------------------------------------------QNVKWTIIGANSMVQARS--GVTCL-AFVNG 299 (350)
Q Consensus 272 -------------------------------------------------~g~~~~i~g~ny~v~~~~--~~~Cl-g~~~~ 299 (350)
+|..|+|++++|+.+..+ ...|+ ++...
T Consensus 337 iDSGTsli~lP~~~~~ai~~~l~~~~~~~~~~y~~~C~~~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~ 416 (453)
T PTZ00147 337 VDSGTSVITVPTEFLNKFVESLDVFKVPFLPLYVTTCNNTKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPI 416 (453)
T ss_pred ECCCCchhcCCHHHHHHHHHHhCCeecCCCCeEEEeCCCCCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEEC
Confidence 355678888899875432 35798 67765
Q ss_pred CCCCCCceEEcHHHhcceEEEEeCCCCEEEeeecC
Q 036439 300 GVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSSSL 334 (350)
Q Consensus 300 ~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl 334 (350)
+. ..+.||||+.|||++|+|||++++|||||+++
T Consensus 417 ~~-~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 417 DL-EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CC-CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 42 23579999999999999999999999999865
No 18
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=5e-37 Score=296.52 Aligned_cols=246 Identities=15% Similarity=0.268 Sum_probs=181.4
Q ss_pred CCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceee
Q 036439 64 DQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGL 143 (350)
Q Consensus 64 d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~ 143 (350)
|..+.+|+++|.||||+|+++|+|||||+++||+|..|.. | ...|..++.|+|.. |+++ ....|.|
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~~-SsT~----~~~~~~~ 68 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSP--------L-YTACVTHNLYDASD-SSTY----KENGTEF 68 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcC--------c-chhhcccCcCCCCC-Ceee----eECCEEE
Confidence 3457899999999999999999999999999999876521 1 13577777888764 2333 3346899
Q ss_pred eEecCCCCceEEEEEEEEEEEecccCCC-CCCCceeecCeeeE-----EEEecCCCCCCc------hhhhccccCC-Cce
Q 036439 144 MATNPMTHQAAMAELAQDVLSIQSTKGS-KPGPLVRVPRFLFA-----CIAGLGHAPISL------PNQLASHFGF-PPK 210 (350)
Q Consensus 144 ~~~y~~~g~~~~G~l~~Dtv~i~~~~~~-~~g~~~~v~~~~Fg-----cIlGLg~~~~Sl------~~Ql~~~~~~-~~~ 210 (350)
.+.|+ +| +++|.+++|+|++++.... .++.....+...|+ .|||||++..+. ..+|..+..+ +++
T Consensus 69 ~~~Yg-~g-~~~G~~~~D~v~~g~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~ 146 (326)
T cd05487 69 TIHYA-SG-TVKGFLSQDIVTVGGIPVTQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDV 146 (326)
T ss_pred EEEeC-Cc-eEEEEEeeeEEEECCEEeeEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCE
Confidence 99974 54 6899999999999875311 11111121211121 199999976552 2334433223 589
Q ss_pred eEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe-------------------
Q 036439 211 FALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK------------------- 271 (350)
Q Consensus 211 FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~------------------- 271 (350)
||+||++......+|+|+||+.|. .+|.++++|+|+... .+|+|++++|+|+++
T Consensus 147 FS~~L~~~~~~~~~G~l~fGg~d~-----~~y~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~~ 219 (326)
T cd05487 147 FSVYYSRDSSHSLGGEIVLGGSDP-----QHYQGDFHYINTSKT--GFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASFI 219 (326)
T ss_pred EEEEEeCCCCCCCCcEEEECCcCh-----hhccCceEEEECCcC--ceEEEEecEEEECCEEEecCCCCEEEECCCccch
Confidence 999998754234579999999985 467899999999765 799999999999876
Q ss_pred ----------------------------------------eceEEEEccCccEEEeCC--CceEE-EEEeCCC--CCCCc
Q 036439 272 ----------------------------------------QNVKWTIIGANSMVQARS--GVTCL-AFVNGGV--RPRSS 306 (350)
Q Consensus 272 ----------------------------------------~g~~~~i~g~ny~v~~~~--~~~Cl-g~~~~~~--~~~~~ 306 (350)
++..++|++++|+++..+ +..|+ +|...+. ..++.
T Consensus 220 ~lP~~~~~~l~~~~~~~~~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ 299 (326)
T cd05487 220 SGPTSSISKLMEALGAKERLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPL 299 (326)
T ss_pred hCcHHHHHHHHHHhCCcccCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCe
Confidence 456677888899987653 46897 6765432 12358
Q ss_pred eEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 307 IIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 307 ~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
||||+.|||++|++||++++|||||+
T Consensus 300 ~ilG~~flr~~y~vfD~~~~~IGfA~ 325 (326)
T cd05487 300 WVLGATFIRKFYTEFDRQNNRIGFAL 325 (326)
T ss_pred EEEehHHhhccEEEEeCCCCEEeeee
Confidence 99999999999999999999999996
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.2e-35 Score=280.48 Aligned_cols=226 Identities=19% Similarity=0.231 Sum_probs=156.2
Q ss_pred EEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEecCC
Q 036439 70 FITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNPM 149 (350)
Q Consensus 70 Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y~~ 149 (350)
|+++|.||||+|++.|+|||||+++||+|+.| ....|..++.|+|.. |++.+ ....|.|.+.|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c-----------~~~~~~~~~~y~~~~-Sst~~---~~~~~~~~i~Y~- 64 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSET-----------PAAQQGGHKLYDPSK-SSTAK---LLPGATWSISYG- 64 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCC-----------CchhhccCCcCCCcc-Cccce---ecCCcEEEEEeC-
Confidence 89999999999999999999999999999765 222355555566653 22222 123478999986
Q ss_pred CCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCCCchh---------hhccc
Q 036439 150 THQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPISLPN---------QLASH 204 (350)
Q Consensus 150 ~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~Sl~~---------Ql~~~ 204 (350)
+|+.+.|.+++|+|+|++. .++++.||| |||||+..++... ++.++
T Consensus 65 ~G~~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 65 DGSSASGIVYTDTVSIGGV---------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred CCCeEEEEEEEEEEEECCE---------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 7777999999999999875 334444444 9999998765432 33333
Q ss_pred cCCCceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe-------------
Q 036439 205 FGFPPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK------------- 271 (350)
Q Consensus 205 ~~~~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~------------- 271 (350)
. .++.||+||.+. .+|+|+|||+|. .+|.++++|+|++.+ ..+|.|++++|+|+++
T Consensus 136 ~-~~~~Fs~~l~~~----~~G~l~fGg~D~-----~~~~g~l~~~pi~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~iiD 204 (278)
T cd06097 136 L-DAPLFTADLRKA----APGFYTFGYIDE-----SKYKGEISWTPVDNS-SGFWQFTSTSYTVGGDAPWSRSGFSAIAD 204 (278)
T ss_pred c-cCceEEEEecCC----CCcEEEEeccCh-----HHcCCceEEEEccCC-CcEEEEEEeeEEECCcceeecCCceEEee
Confidence 2 268999999873 379999999985 468899999999874 2799999999999975
Q ss_pred eceEEEEccCccE----EEe-----CCCceEEEEEeCC--CCCCC---ceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 272 QNVKWTIIGANSM----VQA-----RSGVTCLAFVNGG--VRPRS---SIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 272 ~g~~~~i~g~ny~----v~~-----~~~~~Clg~~~~~--~~~~~---~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
.|..+..-|++.+ -.+ .....++ .++-. .+.-. .||||+.|||++|+|||++++|||||+
T Consensus 205 SGTs~~~lP~~~~~~l~~~l~g~~~~~~~~~~-~~~C~~~~P~i~f~~~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 205 TGTTLILLPDAIVEAYYSQVPGAYYDSEYGGW-VFPCDTTLPDLSFAVFSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred cCCchhcCCHHHHHHHHHhCcCCcccCCCCEE-EEECCCCCCCEEEEEEEEEcchhhCceeEEEcCCCceeeecC
Confidence 1112211111100 000 0000010 11111 00000 599999999999999999999999984
No 20
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.1e-35 Score=287.37 Aligned_cols=240 Identities=18% Similarity=0.260 Sum_probs=165.8
Q ss_pred ceEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEec
Q 036439 68 HLFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATN 147 (350)
Q Consensus 68 ~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y 147 (350)
.+|+++|.||||+|++.|+|||||+++||+|+.| |..++.|++.. |++. ....|.|.+.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~---------------~~~~~~f~~~~-SsT~----~~~~~~~~i~Y 61 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH---------------PFIHTYFHREL-SSTY----RDLGKGVTVPY 61 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC---------------ccccccCCchh-CcCc----ccCCceEEEEE
Confidence 4799999999999999999999999999999654 11234566654 2222 34458899997
Q ss_pred CCCCceEEEEEEEEEEEecccCCCCCCC---ceee-cCe-----eeEEEEecCCCCCCch--------hhhccccCCCce
Q 036439 148 PMTHQAAMAELAQDVLSIQSTKGSKPGP---LVRV-PRF-----LFACIAGLGHAPISLP--------NQLASHFGFPPK 210 (350)
Q Consensus 148 ~~~g~~~~G~l~~Dtv~i~~~~~~~~g~---~~~v-~~~-----~FgcIlGLg~~~~Sl~--------~Ql~~~~~~~~~ 210 (350)
+ + ++++|.+++|+|+|++........ .+.. ..+ .+..|||||++.++.+ .+|.++..++++
T Consensus 62 g-~-Gs~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~ 139 (364)
T cd05473 62 T-Q-GSWEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDV 139 (364)
T ss_pred C-c-ceEEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccc
Confidence 4 4 467999999999998531111100 0000 111 1122999999877532 245444445679
Q ss_pred eEEecCCC-----C--CCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe------------
Q 036439 211 FALCLPSS-----A--SNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK------------ 271 (350)
Q Consensus 211 FS~cL~~~-----~--~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~------------ 271 (350)
||+||... . ....+|+|+||++|. .++.+++.|+|++.. .+|+|.+++|+|+++
T Consensus 140 FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~-----~~~~g~l~~~p~~~~--~~~~v~l~~i~vg~~~~~~~~~~~~~~ 212 (364)
T cd05473 140 FSLQMCGAGLPVNGSASGTVGGSMVIGGIDP-----SLYKGDIWYTPIREE--WYYEVIILKLEVGGQSLNLDCKEYNYD 212 (364)
T ss_pred eEEEecccccccccccccCCCcEEEeCCcCH-----hhcCCCceEEecCcc--eeEEEEEEEEEECCEecccccccccCc
Confidence 99977421 0 113479999999975 457899999999875 799999999999864
Q ss_pred -------------------------ec---------------------------------------------eEEEEccC
Q 036439 272 -------------------------QN---------------------------------------------VKWTIIGA 281 (350)
Q Consensus 272 -------------------------~g---------------------------------------------~~~~i~g~ 281 (350)
+. ..++|+++
T Consensus 213 ~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~ 292 (364)
T cd05473 213 KAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQ 292 (364)
T ss_pred cEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHH
Confidence 00 02244555
Q ss_pred ccEEEeC---CCceEEEEEeCCCCCCCceEEcHHHhcceEEEEeCCCCEEEeeecCCCcCCCCCCC
Q 036439 282 NSMVQAR---SGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSSSLLFRRTSCSNF 344 (350)
Q Consensus 282 ny~v~~~---~~~~Clg~~~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~sl~~~~~~Cs~~ 344 (350)
+|+.+.. .+..|+++..... .+.||||++|||++|+|||++++|||||+ ++|...
T Consensus 293 ~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIGfa~------~~C~~~ 350 (364)
T cd05473 293 LYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVGFAV------STCAEH 350 (364)
T ss_pred HhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEeeEe------cccccc
Confidence 6665432 1357986533221 24799999999999999999999999994 888763
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.3e-34 Score=274.67 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=166.6
Q ss_pred eEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEecC
Q 036439 69 LFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNP 148 (350)
Q Consensus 69 ~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y~ 148 (350)
.|+++|.||||+|+++|+|||||+++||+ .|.+.|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------~~~~~Y~ 37 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------DFSISYG 37 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------eeEEEec
Confidence 69999999999999999999999999997 1567775
Q ss_pred CCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE---------EEecCCCCC-----------CchhhhccccCC-
Q 036439 149 MTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC---------IAGLGHAPI-----------SLPNQLASHFGF- 207 (350)
Q Consensus 149 ~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc---------IlGLg~~~~-----------Sl~~Ql~~~~~~- 207 (350)
+++.+.|.+++|+|+|++. .++++.||| |||||+... +++.||.++..+
T Consensus 38 -~g~~~~G~~~~D~v~~g~~---------~~~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~ 107 (295)
T cd05474 38 -DGTSASGTWGTDTVSIGGA---------TVKNLQFAVANSTSSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIK 107 (295)
T ss_pred -cCCcEEEEEEEEEEEECCe---------EecceEEEEEecCCCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCccc
Confidence 7789999999999999864 567888999 999999876 577788765333
Q ss_pred CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCC----ccEEEEEeEEEEcCe------------
Q 036439 208 PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPE----GQYYITLTSIRINNK------------ 271 (350)
Q Consensus 208 ~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~----~~y~i~l~~I~V~g~------------ 271 (350)
++.||+||++.. ..+|.|+||++|. .++.+++.|+|+..++. .+|.|++++|+|+++
T Consensus 108 ~~~Fsl~l~~~~--~~~g~l~~Gg~d~-----~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~ 180 (295)
T cd05474 108 KNAYSLYLNDLD--ASTGSILFGGVDT-----AKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLP 180 (295)
T ss_pred ceEEEEEeCCCC--CCceeEEEeeecc-----ceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCcc
Confidence 589999999864 4579999999875 45778999999988742 689999999999863
Q ss_pred ---------------------------------------------------eceEEEEccCccEEEeC----CCceEE-E
Q 036439 272 ---------------------------------------------------QNVKWTIIGANSMVQAR----SGVTCL-A 295 (350)
Q Consensus 272 ---------------------------------------------------~g~~~~i~g~ny~v~~~----~~~~Cl-g 295 (350)
+|++++|++++|+++.. .+..|+ +
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~C~~~~~p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~ 260 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDAKDDGSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLG 260 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEEcCCCcEEEEeCCCCCCCEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEE
Confidence 34566778889988764 256785 7
Q ss_pred EEeCCCCCCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 296 FVNGGVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 296 ~~~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
|...+. +.||||+.|||++|++||.+++|||||+
T Consensus 261 i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~ 294 (295)
T cd05474 261 IQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQ 294 (295)
T ss_pred EEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeec
Confidence 876542 5799999999999999999999999996
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.1e-33 Score=264.77 Aligned_cols=229 Identities=22% Similarity=0.335 Sum_probs=176.4
Q ss_pred eEEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeEecC
Q 036439 69 LFITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMATNP 148 (350)
Q Consensus 69 ~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~~y~ 148 (350)
+|+++|.||||+|+++|++||||+++||++..|... ..|.....|+|..|+ .|.+..+.+.+.|+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----------~~~~~~~~y~~~~S~-----t~~~~~~~~~~~y~ 65 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----------SSCASSGFYNPSKSS-----TFSNQGKPFSISYG 65 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----------THHCTSC-BBGGGST-----TEEEEEEEEEEEET
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----------ccccccccccccccc-----ccccceeeeeeecc
Confidence 699999999999999999999999999998765221 256655666665322 23334567888874
Q ss_pred CCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE----------------EEecCCCCC-------Cchhhhcccc
Q 036439 149 MTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC----------------IAGLGHAPI-------SLPNQLASHF 205 (350)
Q Consensus 149 ~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc----------------IlGLg~~~~-------Sl~~Ql~~~~ 205 (350)
++. ++|.+++|+|.|++. .++++.|+. |||||+... ++..+|..+.
T Consensus 66 -~g~-~~G~~~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 66 -DGS-VSGNLVSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp -TEE-EEEEEEEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred -Ccc-cccccccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 544 999999999999875 344455555 999997543 4555666654
Q ss_pred CC-CceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCe-------------
Q 036439 206 GF-PPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNK------------- 271 (350)
Q Consensus 206 ~~-~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~------------- 271 (350)
.+ +++||++|.+.. ...|.|+||+.|. .+|.+++.|+|+... .+|.+.+++|+|+++
T Consensus 135 ~i~~~~fsl~l~~~~--~~~g~l~~Gg~d~-----~~~~g~~~~~~~~~~--~~w~v~~~~i~i~~~~~~~~~~~~~~~D 205 (317)
T PF00026_consen 135 LISSNVFSLYLNPSD--SQNGSLTFGGYDP-----SKYDGDLVWVPLVSS--GYWSVPLDSISIGGESVFSSSGQQAILD 205 (317)
T ss_dssp SSSSSEEEEEEESTT--SSEEEEEESSEEG-----GGEESEEEEEEBSST--TTTEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred cccccccceeeeecc--cccchheeecccc-----ccccCceeccCcccc--cccccccccccccccccccccceeeecc
Confidence 33 688999998874 4679999999875 567899999999955 899999999999876
Q ss_pred ----------------------------------------------eceEEEEccCccEEEeCCC--ceEE-EEEeCC-C
Q 036439 272 ----------------------------------------------QNVKWTIIGANSMVQARSG--VTCL-AFVNGG-V 301 (350)
Q Consensus 272 ----------------------------------------------~g~~~~i~g~ny~v~~~~~--~~Cl-g~~~~~-~ 301 (350)
++.+++|++++|+.+...+ ..|. +|...+ .
T Consensus 206 tgt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~ 285 (317)
T PF00026_consen 206 TGTSYIYLPRSIFDAIIKALGGSYSDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSS 285 (317)
T ss_dssp TTBSSEEEEHHHHHHHHHHHTTEEECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESST
T ss_pred cccccccccchhhHHHHhhhcccccceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeeccccc
Confidence 4667888999999877653 3797 566522 1
Q ss_pred CCCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 302 RPRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 302 ~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
.....||||..|||++|++||.+++|||||+
T Consensus 286 ~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 286 DDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp TSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred ccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 2356899999999999999999999999996
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.3e-32 Score=253.29 Aligned_cols=231 Identities=19% Similarity=0.344 Sum_probs=161.3
Q ss_pred EEEEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCC--CCCCCCCCCCCCCCCCCceeeeEec
Q 036439 70 FITNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANT--PYCHTCNSTPRPGCHNNTCGLMATN 147 (350)
Q Consensus 70 Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~--~~c~~css~~~~~c~~~~c~~~~~y 147 (350)
|+++|.||||+|+++|+|||||+++||+|..|.. |. |..... +.+. ....|.++.|.|.+.|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~--------~~---~~~~~~~~~~~~-----~s~~~~~~~~~~~~~Y 64 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS--------CS---CQKHPRFKYDSS-----KSSTYKDTGCTFSITY 64 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc--------cc---cccCCCCccCcc-----CCceeecCCCEEEEEE
Confidence 8899999999999999999999999999987621 21 211111 1111 1123456679999997
Q ss_pred CCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE---------------EEecCCCC------CCchhhhccccC
Q 036439 148 PMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC---------------IAGLGHAP------ISLPNQLASHFG 206 (350)
Q Consensus 148 ~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc---------------IlGLg~~~------~Sl~~Ql~~~~~ 206 (350)
. + +.++|.+++|+|+|++. .++++.||| |||||+.. .+++.|+.++..
T Consensus 65 ~-~-g~~~g~~~~D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 65 G-D-GSVTGGLGTDTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred C-C-CeEEEEEEEeEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 4 4 68899999999999875 356777877 99999988 788899887553
Q ss_pred -CCceeEEecCCCCCCCCCceEEEcCCCCCcCCccccCCCeeEEecccCCCccEEEEEeEEEEcCee-------------
Q 036439 207 -FPPKFALCLPSSASNVPNGAIFFGDGPYLMLPGIDISSQLRFTPLTISPEGQYYITLTSIRINNKQ------------- 272 (350)
Q Consensus 207 -~~~~FS~cL~~~~~~~~~G~l~fGg~~~~~~p~~~~~g~l~ytPl~~~~~~~y~i~l~~I~V~g~~------------- 272 (350)
.+++||+||.+.......|.|+||+.|. .++.+++.|+|++.+...+|.|.+++|+|+++.
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~-----~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiD 208 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDP-----SKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVD 208 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCc-----cccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEe
Confidence 3699999999852114689999999985 346789999999985338999999999999841
Q ss_pred -ceEEEEccCccE---E-EeCC----CceEEEEEeC--CCCC-CC---ceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 273 -NVKWTIIGANSM---V-QARS----GVTCLAFVNG--GVRP-RS---SIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 273 -g~~~~i~g~ny~---v-~~~~----~~~Clg~~~~--~~~~-~~---~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
|..+..-+++.+ . .... ...|..+... ...+ -. .||||+.|||++|++||.+++|||||+
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~i~f~f~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSSSDGGYGVDCSPCDTLPDITFTFLWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccccCCcEEEeCcccCcCCCEEEEEEEEccHhhhhheEEEEeCCCCEEeecC
Confidence 111111111100 0 0000 0112221111 1000 01 499999999999999999999999983
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.8e-29 Score=221.21 Aligned_cols=147 Identities=37% Similarity=0.656 Sum_probs=119.5
Q ss_pred EEEEEEecCCCCeEeEEEeCCCCcceEeC----CCCCCCCcccCCCCCChhccccCCCCCCCCCCCCCCCCCCCceeeeE
Q 036439 70 FITNIHKRNPLKQVPFVVHLNGQFLWVAC----EQSYLSSTYHAPLCHSTQCARANTPYCHTCNSTPRPGCHNNTCGLMA 145 (350)
Q Consensus 70 Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c----~~c~~SsTy~~v~C~s~~C~~~~~~~c~~css~~~~~c~~~~c~~~~ 145 (350)
|+++|.||||+|++.|++||||+++|++| -...+|+||++++|.++.|...+.. +.. ..|.++.|.|.+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~------~~~~~~~C~y~~ 73 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPC------CCCSNNSCPYSQ 73 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSS-BTC------CTCESSEEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccc-ccc------CCCCcCccccee
Confidence 89999999999999999999999999999 3457999999999999999987654 111 123567899999
Q ss_pred ecCCCCceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE-------------EEecCCCCCCchhhhccccCCCceeE
Q 036439 146 TNPMTHQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC-------------IAGLGHAPISLPNQLASHFGFPPKFA 212 (350)
Q Consensus 146 ~y~~~g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc-------------IlGLg~~~~Sl~~Ql~~~~~~~~~FS 212 (350)
.|. +++.++|++++|+|+++...+. ...+++++||| |||||++++|+++|+++. ..++||
T Consensus 74 ~y~-~~s~~~G~l~~D~~~~~~~~~~----~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~--~~~~FS 146 (164)
T PF14543_consen 74 SYG-DGSSSSGFLASDTLTFGSSSGG----SNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASS--SGNKFS 146 (164)
T ss_dssp EET-TTEEEEEEEEEEEEEEEEESSS----SEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH----SEEE
T ss_pred ecC-CCccccCceEEEEEEecCCCCC----CceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHh--cCCeEE
Confidence 996 8999999999999999986432 14678899999 999999999999999876 459999
Q ss_pred EecCCCCCCCCCceEEEcC
Q 036439 213 LCLPSSASNVPNGAIFFGD 231 (350)
Q Consensus 213 ~cL~~~~~~~~~G~l~fGg 231 (350)
|||++ .+....|.|+||+
T Consensus 147 yCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S--SSSSEEEEEECS
T ss_pred EECCC-CCCCCCEEEEeCc
Confidence 99999 2226789999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.66 E-value=9.2e-16 Score=124.54 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=64.2
Q ss_pred EEEEecCCCCeEeEEEeCCCCcceEeCCCCCCCCcccCCCCCChhccccCCC-CCCCCCCCCCCCCCCCceeeeEecCCC
Q 036439 72 TNIHKRNPLKQVPFVVHLNGQFLWVACEQSYLSSTYHAPLCHSTQCARANTP-YCHTCNSTPRPGCHNNTCGLMATNPMT 150 (350)
Q Consensus 72 ~~I~iGTP~q~~~vvlDTGSs~lWv~c~~c~~SsTy~~v~C~s~~C~~~~~~-~c~~css~~~~~c~~~~c~~~~~y~~~ 150 (350)
++|.||||||+++|+|||||+++||+|+.|. .| .|...+.+ ++. ++++. ....|.|.+.|. +
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--------~~---~~~~~~~~~~~~-~sst~----~~~~~~~~~~Y~-~ 63 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--------SL---AIYSHSSYDDPS-ASSTY----SDNGCTFSITYG-T 63 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--------Cc---ccccccccCCcC-CCCCC----CCCCcEEEEEeC-C
Confidence 4799999999999999999999999998652 12 22222333 332 12222 345689999974 5
Q ss_pred CceEEEEEEEEEEEecccCCCCCCCceeecCeeeEE
Q 036439 151 HQAAMAELAQDVLSIQSTKGSKPGPLVRVPRFLFAC 186 (350)
Q Consensus 151 g~~~~G~l~~Dtv~i~~~~~~~~g~~~~v~~~~Fgc 186 (350)
+.+.|.+++|+|+|++. .++++.|||
T Consensus 64 -g~~~g~~~~D~v~ig~~---------~~~~~~fg~ 89 (109)
T cd05470 64 -GSLSGGLSTDTVSIGDI---------EVVGQAFGC 89 (109)
T ss_pred -CeEEEEEEEEEEEECCE---------EECCEEEEE
Confidence 46789999999999865 577888887
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.37 E-value=1.9e-12 Score=112.98 Aligned_cols=61 Identities=34% Similarity=0.523 Sum_probs=52.5
Q ss_pred eceEEEEccCccEEEeCCCceEEEEEeCCCCCCCceEEcHHHhcceEEEEeCCCCEEEeee
Q 036439 272 QNVKWTIIGANSMVQARSGVTCLAFVNGGVRPRSSIIIGSHQLQDNLVQFALAGSRLGFSS 332 (350)
Q Consensus 272 ~g~~~~i~g~ny~v~~~~~~~Clg~~~~~~~~~~~~ILG~~~l~~~~vvFD~~~~rIGFa~ 332 (350)
+|+.|+++++||+++..+++.||+|..++....+.+|||+.||++++++||++++||||++
T Consensus 101 ~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~~ 161 (161)
T PF14541_consen 101 GGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFAP 161 (161)
T ss_dssp TSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEEE
T ss_pred CCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEeC
Confidence 4789999999999999888999999987222357899999999999999999999999985
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=94.74 E-value=0.037 Score=42.72 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=25.5
Q ss_pred eEEEEEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 69 LFITNIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 69 ~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
.|++++.|+ .+++++++|||++..|++-
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~ 29 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISE 29 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 589999999 4999999999999999874
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=89.52 E-value=0.68 Score=38.34 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=31.0
Q ss_pred eeeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 59 LPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 59 ~Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
+||.++ .++.|++++.|.- +++.+++|||++.+-++-
T Consensus 2 ~~i~~~-~~g~~~v~~~InG--~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVNG--RNVRFLVDTGATSVALNE 38 (121)
T ss_pred EEEEEc-CCCeEEEEEEECC--EEEEEEEECCCCcEEcCH
Confidence 577664 5789999999986 799999999999987754
No 29
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=83.97 E-value=1.1 Score=34.69 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.7
Q ss_pred EEEEEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 70 FITNIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 70 Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
|++++.|+. +++.+.+||||+..++.-
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCH
Confidence 578889987 899999999999999864
No 30
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=73.78 E-value=5.6 Score=29.53 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCceEEEEEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 66 ATHLFITNIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 66 ~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
..+.+++++.||. +++.+++|||++..-++.
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISE 35 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCH
Confidence 4578999999998 999999999999887764
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=64.78 E-value=9.2 Score=31.50 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=26.3
Q ss_pred CCceEEEEEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 66 ATHLFITNIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 66 ~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
.+..+++++.|+. +++.+++|||++..++.-
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~ 43 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSK 43 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCH
Confidence 3567899999986 789999999999998853
No 32
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=64.50 E-value=9 Score=29.79 Aligned_cols=26 Identities=4% Similarity=0.109 Sum_probs=21.0
Q ss_pred EEEEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 71 ITNIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 71 ~~~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
+.+|.+.. +++.+++|||++..-++-
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISE 32 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESS
T ss_pred eEEEeECC--EEEEEEEecCCCcceecc
Confidence 45677776 799999999998877764
No 33
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.46 E-value=3.9 Score=32.51 Aligned_cols=14 Identities=14% Similarity=0.448 Sum_probs=5.8
Q ss_pred HHHHHHHhhhhccc
Q 036439 24 IFFLISTSFFLVTQ 37 (350)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (350)
+|.++|..+|++++
T Consensus 8 lL~l~LA~lLlisS 21 (95)
T PF07172_consen 8 LLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334434444443
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=60.80 E-value=8.6 Score=28.78 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=18.6
Q ss_pred EEEecCCCCeEeEEEeCCCCcceEe
Q 036439 73 NIHKRNPLKQVPFVVHLNGQFLWVA 97 (350)
Q Consensus 73 ~I~iGTP~q~~~vvlDTGSs~lWv~ 97 (350)
++.|+- +++++++|||++...+.
T Consensus 2 ~v~vng--~~~~~liDTGa~~~~i~ 24 (90)
T PF13650_consen 2 PVKVNG--KPVRFLIDTGASISVIS 24 (90)
T ss_pred EEEECC--EEEEEEEcCCCCcEEEC
Confidence 566665 79999999999987765
No 35
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=53.29 E-value=27 Score=32.59 Aligned_cols=45 Identities=7% Similarity=0.163 Sum_probs=30.8
Q ss_pred CceEeeeeeCCCCceEEEE---EEecC---CCCeEeEEEeCCCCcceEeCC
Q 036439 55 NKLVLPIQKDQATHLFITN---IHKRN---PLKQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 55 ~~~~~Pi~~d~~~~~Y~~~---I~iGT---P~q~~~vvlDTGSs~lWv~c~ 99 (350)
...-+|+.++.....|.++ |.||. +.....+++|||++++.+|-+
T Consensus 144 ~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 144 GVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 3456787765434566554 67873 234567999999999999864
No 36
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=41.51 E-value=31 Score=26.85 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=19.3
Q ss_pred EEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 73 NIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 73 ~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
++.|+ .|.+.+++|||.+++-+.-
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcc
Confidence 35566 4999999999999988864
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=38.57 E-value=33 Score=26.10 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=18.3
Q ss_pred EEecCCCCeEeEEEeCCCCcceEeC
Q 036439 74 IHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 74 I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
+.|.- +++.+++|||.+.+-+.-
T Consensus 3 v~InG--~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 3 ITVEG--VPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEECC--EEEEEEEECCCCeEEECH
Confidence 44544 789999999999988864
No 38
>PLN03146 aspartyl protease family protein; Provisional
Probab=33.39 E-value=74 Score=32.09 Aligned_cols=44 Identities=5% Similarity=0.133 Sum_probs=29.1
Q ss_pred ceEeeeeeCCCCceEEEE---EEecC-----CCCe------EeEEEeCCCCcceEeCC
Q 036439 56 KLVLPIQKDQATHLFITN---IHKRN-----PLKQ------VPFVVHLNGQFLWVACE 99 (350)
Q Consensus 56 ~~~~Pi~~d~~~~~Y~~~---I~iGT-----P~q~------~~vvlDTGSs~lWv~c~ 99 (350)
....|+.+......|+++ |.||. |+.. -.++||||+.+++++-+
T Consensus 267 ~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 267 VVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred ceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 455788654334567654 68885 2221 26899999999999863
No 39
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=33.02 E-value=67 Score=29.34 Aligned_cols=46 Identities=7% Similarity=0.096 Sum_probs=31.3
Q ss_pred CCCceEeeeeeCCCCceEEEE---EEecC-----CCCeEeEEEeCCCCcceEeCC
Q 036439 53 NPNKLVLPIQKDQATHLFITN---IHKRN-----PLKQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 53 ~p~~~~~Pi~~d~~~~~Y~~~---I~iGT-----P~q~~~vvlDTGSs~lWv~c~ 99 (350)
+.....+|+... ....|.+. |.+|. ......++||||++.+|+|-+
T Consensus 166 ~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 166 TGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred CCceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 345566677653 24455543 56665 346789999999999999864
No 40
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=29.49 E-value=84 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=20.9
Q ss_pred CCceEEEEEEecCCCCeEeEEEeCCCCcceEe
Q 036439 66 ATHLFITNIHKRNPLKQVPFVVHLNGQFLWVA 97 (350)
Q Consensus 66 ~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~ 97 (350)
....+|+++.|+. +++++.+|||....-+.
T Consensus 21 ~v~mLyI~~~ing--~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 21 QVSMLYINCKING--VPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp -----EEEEEETT--EEEEEEEETT-SS-EEE
T ss_pred CcceEEEEEEECC--EEEEEEEeCCCCccccC
Confidence 4567899999998 89999999998887775
No 41
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=29.25 E-value=72 Score=29.95 Aligned_cols=47 Identities=4% Similarity=0.035 Sum_probs=31.7
Q ss_pred CCCceEeeeeeCCC-CceEEEE---EEecCCC--------CeEeEEEeCCCCcceEeCC
Q 036439 53 NPNKLVLPIQKDQA-THLFITN---IHKRNPL--------KQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 53 ~p~~~~~Pi~~d~~-~~~Y~~~---I~iGTP~--------q~~~vvlDTGSs~lWv~c~ 99 (350)
++....+|+.++.. ...|.++ |.||.-. ..-.+++|||++++++|-+
T Consensus 130 ~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 130 PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 45667788877542 3456554 6787421 2336899999999999853
No 42
>PRK13617 psbV cytochrome c-550; Provisional
Probab=27.46 E-value=71 Score=28.17 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=7.5
Q ss_pred CCCceEeeeeeC
Q 036439 53 NPNKLVLPIQKD 64 (350)
Q Consensus 53 ~p~~~~~Pi~~d 64 (350)
.+.+..+|+...
T Consensus 37 d~~~~tv~~~~~ 48 (170)
T PRK13617 37 DAETLTVPADPS 48 (170)
T ss_pred cccceeeecCCC
Confidence 345677787653
No 43
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=24.43 E-value=1e+02 Score=28.71 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=29.4
Q ss_pred CceEeeeeeCCCC---ceEEE---EEEecCC-------CCeEeEEEeCCCCcceEeCC
Q 036439 55 NKLVLPIQKDQAT---HLFIT---NIHKRNP-------LKQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 55 ~~~~~Pi~~d~~~---~~Y~~---~I~iGTP-------~q~~~vvlDTGSs~lWv~c~ 99 (350)
....+|+..+... ..|.+ .|.+|.- .....++||||++.+|+|-+
T Consensus 138 ~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~ 195 (295)
T cd05474 138 DLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSD 195 (295)
T ss_pred eeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHH
Confidence 3455677664321 45544 4677752 24568999999999999853
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=23.83 E-value=1e+02 Score=27.21 Aligned_cols=45 Identities=7% Similarity=0.086 Sum_probs=28.1
Q ss_pred CCCceEeeeeeCC----CCceEEEEEEecCCCCeEeEEEeCCCCcceEeCC
Q 036439 53 NPNKLVLPIQKDQ----ATHLFITNIHKRNPLKQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 53 ~p~~~~~Pi~~d~----~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c~ 99 (350)
++..-..||-... -+.-+.+++.+- ..+++++|||||..-.+..+
T Consensus 14 ~~~~~~~PIV~~~~~Pevg~T~~v~l~~~--~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 14 KSSITTCPIVHYIAIPEVGKTAIVQLNCK--GTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cceeeeeeeEEEeeccccCcEEEEEEeec--CcEEEEEEeCCCccceeehh
Confidence 4444456664321 233445555444 48999999999998877653
No 45
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=23.45 E-value=91 Score=29.82 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=27.7
Q ss_pred ceEeeeeeCCCCceEEEE---EEecCC------CCeEeEEEeCCCCcceEeCC
Q 036439 56 KLVLPIQKDQATHLFITN---IHKRNP------LKQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 56 ~~~~Pi~~d~~~~~Y~~~---I~iGTP------~q~~~vvlDTGSs~lWv~c~ 99 (350)
..-+|+.+. ..|.++ |.||.. .....++||||++++++|-+
T Consensus 199 ~~~~p~~~~---~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 199 IVWTPITRK---YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred ceEEeccCC---ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 345676552 456554 577753 24567899999999999863
No 46
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=23.34 E-value=83 Score=29.98 Aligned_cols=41 Identities=5% Similarity=0.050 Sum_probs=26.7
Q ss_pred CceEeeeeeCCCCceEEEE---EEecCC-----CCeEeEEEeCCCCcceEeC
Q 036439 55 NKLVLPIQKDQATHLFITN---IHKRNP-----LKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 55 ~~~~~Pi~~d~~~~~Y~~~---I~iGTP-----~q~~~vvlDTGSs~lWv~c 98 (350)
...-+|+.+ ...|.++ |.||.. .....+++|||++++++|-
T Consensus 178 ~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~ 226 (317)
T cd06098 178 EHTYVPVTR---KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT 226 (317)
T ss_pred ceEEEecCc---CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence 334556643 2345444 677752 2346799999999999985
No 47
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=22.68 E-value=70 Score=29.74 Aligned_cols=43 Identities=2% Similarity=0.038 Sum_probs=28.5
Q ss_pred CceEeeeeeCCCCceEEEE---EEecC----CCCeEeEEEeCCCCcceEeCC
Q 036439 55 NKLVLPIQKDQATHLFITN---IHKRN----PLKQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 55 ~~~~~Pi~~d~~~~~Y~~~---I~iGT----P~q~~~vvlDTGSs~lWv~c~ 99 (350)
...-+|+.++ ...|.++ |.||. ......++||||++++++|-+
T Consensus 166 ~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 166 EISWTPVDNS--SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred ceEEEEccCC--CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 4456677652 3445443 56663 245678999999999999853
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=22.17 E-value=1.9e+02 Score=26.48 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=30.0
Q ss_pred EeeeeeCCCCceEEEEEEecCCCCeEeEEEeCCCCcceEeC
Q 036439 58 VLPIQKDQATHLFITNIHKRNPLKQVPFVVHLNGQFLWVAC 98 (350)
Q Consensus 58 ~~Pi~~d~~~~~Y~~~I~iGTP~q~~~vvlDTGSs~lWv~c 98 (350)
.+-|.|+ .++-|+++..|-- |++..++|||-+.+-++-
T Consensus 95 ~v~Lak~-~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~ 132 (215)
T COG3577 95 EVSLAKS-RDGHFEANGRVNG--KKVDFLVDTGATSVALNE 132 (215)
T ss_pred EEEEEec-CCCcEEEEEEECC--EEEEEEEecCcceeecCH
Confidence 3344442 5778999999987 999999999999888764
No 49
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=21.74 E-value=1.6e+02 Score=27.19 Aligned_cols=47 Identities=6% Similarity=0.096 Sum_probs=30.7
Q ss_pred CCCceEeeeeeCC-CCceEEE---EEEecCC-------------CCeEeEEEeCCCCcceEeCC
Q 036439 53 NPNKLVLPIQKDQ-ATHLFIT---NIHKRNP-------------LKQVPFVVHLNGQFLWVACE 99 (350)
Q Consensus 53 ~p~~~~~Pi~~d~-~~~~Y~~---~I~iGTP-------------~q~~~vvlDTGSs~lWv~c~ 99 (350)
+....-+|+.+.. ....|.+ .|.||.- .....+++|||++++.+|-+
T Consensus 130 ~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 130 GSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 4455677886642 2344544 4778752 23456999999999999863
No 50
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=21.18 E-value=1e+02 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=19.5
Q ss_pred EEEEecCCC----CeEeEEEeCCCCcce-EeC
Q 036439 72 TNIHKRNPL----KQVPFVVHLNGQFLW-VAC 98 (350)
Q Consensus 72 ~~I~iGTP~----q~~~vvlDTGSs~lW-v~c 98 (350)
++|.++.|. -++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 567787773 378999999988653 443
Done!