BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036440
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 34/202 (16%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN A+ASD++ + +LAL+ C +F+ L S+VDVG FP +KC FD+P
Sbjct: 164 FNDAMASDSKLI--NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 221
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIF-- 106
VV NL +NNL Y+ D F SIP + +++ + + + L I
Sbjct: 222 QVVENLSGSNNLTYVGGDMFTSIP-----------NADAVLLKYILHNWTDKDCLRILKK 270
Query: 107 ---SWLNFMKR--VINMQIIIHVFGDEESVKILKICREAITS--KAKLSTEKELESLFVE 159
+ N KR V + ++I DE V +K+ + + K E+E + LF+E
Sbjct: 271 CKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIE 330
Query: 160 VHFHHYKITPLFGLPSLIEVYP 181
F HYKI+PL G SLIE+YP
Sbjct: 331 AGFQHYKISPLTGFLSLIEIYP 352
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 99/202 (49%), Gaps = 34/202 (16%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN A ASD++ + +LAL+ C +F+ L S+VDVG FP +KC FD+P
Sbjct: 164 FNDAXASDSKLI--NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 221
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIF-- 106
VV NL +NNL Y+ D F SIP + +++ + + + L I
Sbjct: 222 QVVENLSGSNNLTYVGGDXFTSIP-----------NADAVLLKYILHNWTDKDCLRILKK 270
Query: 107 ---SWLNFMKR--VINMQIIIHVFGDEESVKILKICREAITS--KAKLSTEKELESLFVE 159
+ N KR V + +I DE V +K+ + + K E+E + LF+E
Sbjct: 271 CKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACLNGKERNEEEWKKLFIE 330
Query: 160 VHFHHYKITPLFGLPSLIEVYP 181
F HYKI+PL G SLIE+YP
Sbjct: 331 AGFQHYKISPLTGFLSLIEIYP 352
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 98/201 (48%), Gaps = 32/201 (15%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
+N A+ASD++ + +LA+K C +FE L S+VDVG FP + C FD+P
Sbjct: 169 YNDALASDSKMI--NLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRP 226
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLR------LGYSHIKIMIAFFIRLVVGRGR 102
VV NL +NNL Y+ D F S+P + L+ IKI+ V G+
Sbjct: 227 KVVENLCGSNNLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKK-CKEAVTSDGK 285
Query: 103 LHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITS--KAKLSTEKELESLFVEV 160
+VI + ++I+ DE + +K+ S K E+E + LF+E
Sbjct: 286 ---------RGKVIVIDMVINEKKDENQLTQIKLLMNVTISCVNGKERNEEEWKKLFIEA 336
Query: 161 HFHHYKITPLFGLPSLIEVYP 181
F YKI+P GL SLIE+YP
Sbjct: 337 GFQDYKISPFTGLMSLIEIYP 357
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 93/231 (40%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
F A+ASD++ L L+ K++FE L SLVDVG FP +KCT FDQP
Sbjct: 168 FQDAMASDSRMF--KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL NL ++ D F+SIP + L+ W
Sbjct: 226 QVVGNLTGNENLNFVGGDMFKSIPSADAVLLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
++H + DE+S+KILK +EAI+ K K
Sbjct: 259 ------------VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTE 306
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T++E E L + F YKITP+ G SLIEVYP
Sbjct: 307 LQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 357
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 93/231 (40%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
F A+ASD++ L L+ K++FE L SLVDVG FP +KCT FDQP
Sbjct: 169 FQDAMASDSRMF--KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP 226
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL NL ++ D F+SIP + L+ W
Sbjct: 227 QVVGNLTGNENLNFVGGDMFKSIPSADAVLLK---------------------------W 259
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
++H + DE+S+KILK +EAI+ K K
Sbjct: 260 ------------VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTE 307
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T++E E L + F YKITP+ G SLIEVYP
Sbjct: 308 LQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 93/231 (40%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
F A+ASD++ L L+ K++FE L SLVDVG FP +KCT FDQP
Sbjct: 165 FQDAMASDSRMF--KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP 222
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL NL ++ D F+SIP + L+ W
Sbjct: 223 QVVGNLTGNENLNFVGGDMFKSIPSADAVLLK---------------------------W 255
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
++H + DE+S+KILK +EAI+ K K
Sbjct: 256 ------------VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTE 303
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T++E E L + F YKITP+ G SLIEVYP
Sbjct: 304 LQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 354
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 53/159 (33%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN+ + SD T+T L+ FE L SLVDVG +P +K FD P
Sbjct: 176 FNKGM-SDHSTITMKKILETYTG-FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP 233
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HV+ + ++++ D F SIP
Sbjct: 234 HVIEDAPSYPGVEHVGGDMFVSIPKA---------------------------------- 259
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL 147
+ M+ I H + DE +K LK C EA+ K+
Sbjct: 260 -----DAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKV 293
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN+ + + + +T L Y FE LG+LVDVG +P +K FD P
Sbjct: 177 FNEGMKNHSIIITKKLLELY--HGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLP 234
Query: 49 HVVANLLDTNNLKYLADDFFQSIP 72
HV++ + ++ D F+ +P
Sbjct: 235 HVISEAPQFPGVTHVGGDMFKEVP 258
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 53/159 (33%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN+ ++S++ T+T L+ FE L ++VDVG +P + FD P
Sbjct: 179 FNKGMSSNS-TITMKKILEMYNG-FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLP 236
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HV+ + + +++L D F +P +G W
Sbjct: 237 HVIQDAPAFSGVEHLGGDMFDGVP---------------------------KGDAIFIKW 269
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL 147
I H + DE +K+LK C A+ K+
Sbjct: 270 ------------ICHDWSDEHCLKLLKNCYAALPDHGKV 296
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 25 FERLGSLVDVGA------------FPCVKCTEFDQPHVVANLLDTNNLKYLADDFFQSIP 72
FE + +LVDVG +P +K FD P V+ N + ++++ D F S+P
Sbjct: 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP 266
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 25 FERLGSLVDVGA------------FPCVKCTEFDQPHVVANLLDTNNLKYLADDFFQSIP 72
FE + +LVDVG +P +K FD P V+ N + ++++ D F S+P
Sbjct: 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVP 266
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 110 NFMKRVINMQI-----IIHVFGDEESVKILKICREAITSKAKL 147
+F++ V + + I+H +GDE+SV+IL CR + ++
Sbjct: 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRV 282
>pdb|3C3K|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Actinobacillus Succinogenes
pdb|3C3K|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Actinobacillus Succinogenes
Length = 285
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 34 VGAFPCVKCTEFDQPHVVANLL--DTNNLKYLADDFFQS 70
+GAFP V+C E+D V+++ D +Y+ D +S
Sbjct: 84 IGAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKS 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,967,826
Number of Sequences: 62578
Number of extensions: 179736
Number of successful extensions: 519
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 29
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)