Query 036440
Match_columns 181
No_of_seqs 153 out of 1087
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.9 3.9E-28 8.4E-33 201.7 9.5 117 1-158 76-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.9 1.9E-27 4E-32 212.4 10.5 140 1-181 153-342 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.8 2.2E-18 4.8E-23 148.4 13.0 125 3-168 127-305 (306)
4 TIGR00740 methyltransferase, p 98.8 6.5E-08 1.4E-12 80.5 10.0 104 26-168 52-226 (239)
5 PRK15451 tRNA cmo(5)U34 methyl 98.7 2.2E-07 4.7E-12 78.4 10.6 103 26-167 55-228 (247)
6 TIGR02752 MenG_heptapren 2-hep 98.6 1.9E-06 4.1E-11 70.7 13.8 122 17-181 37-231 (231)
7 PTZ00098 phosphoethanolamine N 98.6 1.3E-06 2.9E-11 74.8 12.6 116 15-171 42-204 (263)
8 PRK00216 ubiE ubiquinone/menaq 98.5 6.5E-06 1.4E-10 66.7 13.9 114 27-181 51-238 (239)
9 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 6E-06 1.3E-10 66.2 13.0 115 26-181 38-223 (223)
10 PRK14103 trans-aconitate 2-met 98.3 8.3E-06 1.8E-10 68.6 11.7 68 15-85 19-101 (255)
11 PLN02490 MPBQ/MSBQ methyltrans 98.3 7E-06 1.5E-10 73.9 11.0 104 28-172 114-259 (340)
12 PRK08287 cobalt-precorrin-6Y C 98.2 1.1E-05 2.5E-10 64.7 10.1 118 5-168 11-155 (187)
13 smart00828 PKS_MT Methyltransf 98.2 1.5E-05 3.4E-10 65.0 10.6 101 29-170 1-145 (224)
14 PLN03075 nicotianamine synthas 98.2 2.1E-05 4.5E-10 69.9 11.6 114 27-180 123-273 (296)
15 PLN02233 ubiquinone biosynthes 98.2 5.9E-05 1.3E-09 64.5 13.8 107 26-173 72-252 (261)
16 PF01209 Ubie_methyltran: ubiE 98.1 7.3E-06 1.6E-10 69.7 7.3 110 26-176 46-228 (233)
17 PLN02336 phosphoethanolamine N 98.1 3.8E-05 8.2E-10 70.1 12.1 112 15-169 256-414 (475)
18 TIGR03438 probable methyltrans 98.1 6.4E-05 1.4E-09 65.6 11.8 82 27-145 63-171 (301)
19 PLN02244 tocopherol O-methyltr 98.0 0.0001 2.2E-09 65.5 12.5 51 26-77 117-190 (340)
20 PRK08317 hypothetical protein; 98.0 0.00013 2.8E-09 58.5 11.5 109 17-168 11-175 (241)
21 PF05891 Methyltransf_PK: AdoM 97.9 2.4E-05 5.2E-10 67.0 6.7 58 117-174 127-206 (218)
22 PRK11207 tellurite resistance 97.9 0.00017 3.8E-09 59.0 11.3 110 15-167 20-168 (197)
23 PF12847 Methyltransf_18: Meth 97.9 4.1E-05 8.8E-10 55.4 6.7 79 29-146 3-106 (112)
24 PRK11036 putative S-adenosyl-L 97.9 8.6E-05 1.9E-09 62.6 9.3 103 27-170 44-208 (255)
25 PRK11873 arsM arsenite S-adeno 97.9 0.00018 3.8E-09 60.9 11.2 104 25-169 75-230 (272)
26 TIGR00537 hemK_rel_arch HemK-r 97.8 0.00086 1.9E-08 53.5 13.8 131 27-181 19-177 (179)
27 PRK07580 Mg-protoporphyrin IX 97.8 0.00031 6.7E-09 57.2 11.2 107 26-172 62-217 (230)
28 PRK01683 trans-aconitate 2-met 97.8 0.0004 8.7E-09 58.1 12.1 61 15-77 21-97 (258)
29 TIGR02021 BchM-ChlM magnesium 97.8 0.00028 6.1E-09 57.9 10.9 52 26-77 54-123 (219)
30 PRK15068 tRNA mo(5)U34 methylt 97.8 0.00038 8.2E-09 61.7 12.1 100 29-170 124-275 (322)
31 PRK06202 hypothetical protein; 97.8 0.00043 9.3E-09 57.4 11.7 105 26-170 59-223 (232)
32 PF13847 Methyltransf_31: Meth 97.7 0.00017 3.7E-09 55.8 7.6 77 27-145 3-104 (152)
33 TIGR03534 RF_mod_PrmC protein- 97.7 0.00041 8.9E-09 57.1 10.1 127 28-171 88-243 (251)
34 PF13489 Methyltransf_23: Meth 97.7 0.00027 5.9E-09 53.5 8.0 48 117-166 83-160 (161)
35 PLN02396 hexaprenyldihydroxybe 97.6 0.00027 5.8E-09 63.1 8.8 99 29-169 133-289 (322)
36 PF12147 Methyltransf_20: Puta 97.6 0.00091 2E-08 60.0 11.2 114 27-179 135-309 (311)
37 PLN02336 phosphoethanolamine N 97.5 0.00063 1.4E-08 62.1 9.4 109 15-165 27-178 (475)
38 PLN02585 magnesium protoporphy 97.5 0.00084 1.8E-08 59.8 9.7 34 148-181 278-314 (315)
39 COG2226 UbiE Methylase involve 97.4 0.0017 3.7E-08 56.1 10.9 102 29-171 53-226 (238)
40 TIGR00452 methyltransferase, p 97.4 0.0027 5.8E-08 56.7 12.3 99 29-170 123-274 (314)
41 PRK09328 N5-glutamine S-adenos 97.3 0.0085 1.8E-07 50.3 13.5 129 26-179 107-273 (275)
42 PRK15001 SAM-dependent 23S rib 97.3 0.0024 5.3E-08 58.4 10.8 127 15-180 218-372 (378)
43 TIGR02072 BioC biotin biosynth 97.3 0.0052 1.1E-07 49.4 11.2 98 29-168 36-175 (240)
44 PLN02232 ubiquinone biosynthes 97.3 0.0012 2.6E-08 52.4 7.3 27 146-172 124-150 (160)
45 PRK06922 hypothetical protein; 97.2 0.0013 2.8E-08 64.4 8.6 83 24-145 415-531 (677)
46 PRK12335 tellurite resistance 97.2 0.0057 1.2E-07 52.8 11.0 113 15-170 110-260 (287)
47 TIGR00477 tehB tellurite resis 97.2 0.0069 1.5E-07 49.5 10.9 111 15-168 20-168 (195)
48 TIGR00138 gidB 16S rRNA methyl 97.1 0.0079 1.7E-07 49.1 10.4 102 28-174 43-174 (181)
49 PRK14968 putative methyltransf 97.1 0.039 8.4E-07 43.2 13.9 122 26-170 22-174 (188)
50 PRK05134 bifunctional 3-demeth 97.0 0.011 2.3E-07 48.7 10.7 23 146-168 182-204 (233)
51 PF08242 Methyltransf_12: Meth 97.0 0.00055 1.2E-08 49.0 2.4 70 36-146 17-98 (99)
52 PRK04266 fibrillarin; Provisio 96.9 0.028 6E-07 47.7 12.9 120 15-172 59-213 (226)
53 smart00138 MeTrc Methyltransfe 96.9 0.0055 1.2E-07 52.8 8.4 68 39-145 132-236 (264)
54 KOG1540 Ubiquinone biosynthesi 96.9 0.0092 2E-07 53.1 9.7 38 40-77 131-181 (296)
55 PF02353 CMAS: Mycolic acid cy 96.9 0.013 2.8E-07 51.1 10.5 135 24-170 59-218 (273)
56 PF11968 DUF3321: Putative met 96.8 0.014 2.9E-07 50.3 10.4 96 29-171 53-183 (219)
57 TIGR02081 metW methionine bios 96.8 0.014 3E-07 47.2 9.8 25 146-170 144-168 (194)
58 PRK10258 biotin biosynthesis p 96.8 0.023 4.9E-07 47.4 11.0 61 15-77 32-107 (251)
59 PF08241 Methyltransf_11: Meth 96.7 0.006 1.3E-07 41.8 5.8 70 36-146 16-92 (95)
60 TIGR03840 TMPT_Se_Te thiopurin 96.7 0.053 1.2E-06 45.5 12.6 102 27-168 34-186 (213)
61 PRK03612 spermidine synthase; 96.6 0.006 1.3E-07 57.5 7.4 93 26-162 296-437 (521)
62 PF06080 DUF938: Protein of un 96.6 0.029 6.2E-07 47.8 10.5 59 117-175 107-198 (204)
63 PRK09489 rsmC 16S ribosomal RN 96.6 0.038 8.2E-07 49.7 11.8 124 15-180 186-335 (342)
64 PRK04457 spermidine synthase; 96.5 0.029 6.2E-07 48.4 10.1 52 26-77 65-140 (262)
65 PRK11805 N5-glutamine S-adenos 96.5 0.035 7.6E-07 49.0 10.9 117 29-170 135-287 (307)
66 PF13649 Methyltransf_25: Meth 96.5 0.0083 1.8E-07 43.3 5.6 68 38-145 23-101 (101)
67 COG4106 Tam Trans-aconitate me 96.4 0.011 2.4E-07 51.6 7.1 149 14-180 19-202 (257)
68 TIGR01983 UbiG ubiquinone bios 96.4 0.029 6.2E-07 45.5 8.9 21 148-168 182-202 (224)
69 TIGR03587 Pse_Me-ase pseudamin 96.3 0.029 6.2E-07 46.6 8.9 78 26-142 42-135 (204)
70 TIGR00536 hemK_fam HemK family 96.3 0.11 2.4E-06 44.8 12.6 125 29-179 116-280 (284)
71 PRK00377 cbiT cobalt-precorrin 96.2 0.043 9.3E-07 44.6 9.3 100 24-168 37-168 (198)
72 PRK01544 bifunctional N5-gluta 96.2 0.072 1.6E-06 50.2 11.8 126 29-179 140-304 (506)
73 PF04672 Methyltransf_19: S-ad 96.2 0.0095 2.1E-07 52.6 5.5 106 27-165 68-232 (267)
74 COG3315 O-Methyltransferase in 96.2 0.047 1E-06 48.4 9.9 113 27-167 92-262 (297)
75 TIGR02469 CbiT precorrin-6Y C5 96.2 0.048 1E-06 39.5 8.4 85 16-146 10-117 (124)
76 PRK14966 unknown domain/N5-glu 96.2 0.19 4E-06 47.1 14.1 147 15-179 239-416 (423)
77 PRK13255 thiopurine S-methyltr 96.1 0.078 1.7E-06 44.6 10.6 114 15-168 24-189 (218)
78 TIGR03533 L3_gln_methyl protei 96.1 0.081 1.8E-06 46.0 11.0 116 27-168 121-273 (284)
79 PRK05785 hypothetical protein; 96.0 0.14 3.1E-06 43.0 11.7 33 146-179 189-222 (226)
80 PRK00517 prmA ribosomal protei 96.0 0.16 3.4E-06 43.0 11.8 50 128-177 190-246 (250)
81 PRK11705 cyclopropane fatty ac 95.9 0.14 2.9E-06 46.7 11.7 106 24-169 164-312 (383)
82 PRK11188 rrmJ 23S rRNA methylt 95.8 0.14 3.1E-06 42.5 10.8 50 131-180 145-201 (209)
83 PRK00121 trmB tRNA (guanine-N( 95.7 0.024 5.3E-07 46.6 5.6 100 27-165 40-177 (202)
84 PF05175 MTS: Methyltransferas 95.7 0.1 2.2E-06 41.6 9.0 90 15-145 21-134 (170)
85 PTZ00146 fibrillarin; Provisio 95.7 0.23 5E-06 44.4 12.1 105 25-172 130-274 (293)
86 PRK00107 gidB 16S rRNA methylt 95.6 0.27 5.9E-06 40.5 11.5 103 26-173 44-175 (187)
87 TIGR00406 prmA ribosomal prote 95.6 0.086 1.9E-06 45.7 8.9 100 28-172 160-286 (288)
88 PF05401 NodS: Nodulation prot 95.6 0.025 5.3E-07 48.2 5.2 82 25-145 41-140 (201)
89 cd02440 AdoMet_MTases S-adenos 95.5 0.11 2.4E-06 34.5 7.5 76 30-145 1-98 (107)
90 TIGR00091 tRNA (guanine-N(7)-) 95.5 0.03 6.4E-07 45.6 5.4 43 27-69 16-77 (194)
91 TIGR00027 mthyl_TIGR00027 meth 95.4 0.19 4.2E-06 43.4 10.3 44 27-70 81-144 (260)
92 PRK07402 precorrin-6B methylas 95.3 0.19 4.1E-06 40.6 9.3 104 17-167 32-168 (196)
93 COG2230 Cfa Cyclopropane fatty 95.1 0.19 4.2E-06 44.7 9.7 136 15-170 62-224 (283)
94 TIGR03704 PrmC_rel_meth putati 94.6 0.9 2E-05 38.8 12.2 124 28-168 87-239 (251)
95 PRK13256 thiopurine S-methyltr 94.5 0.98 2.1E-05 38.8 12.0 114 15-168 30-196 (226)
96 COG4123 Predicted O-methyltran 94.5 0.4 8.7E-06 41.9 9.8 141 16-180 34-211 (248)
97 PHA03411 putative methyltransf 94.4 0.47 1E-05 42.2 10.2 116 28-164 65-209 (279)
98 PRK01581 speE spermidine synth 94.2 0.22 4.8E-06 46.0 7.9 107 26-168 149-296 (374)
99 TIGR01177 conserved hypothetic 94.1 0.35 7.5E-06 42.6 8.8 113 24-170 179-316 (329)
100 COG2813 RsmC 16S RNA G1207 met 94.0 0.11 2.3E-06 46.8 5.3 124 15-180 148-298 (300)
101 PF03848 TehB: Tellurite resis 93.8 0.4 8.6E-06 40.3 8.2 111 15-168 20-168 (192)
102 COG2242 CobL Precorrin-6B meth 93.8 0.92 2E-05 38.3 10.3 98 25-167 32-159 (187)
103 PLN02672 methionine S-methyltr 93.7 0.62 1.3E-05 48.3 10.7 40 131-170 258-304 (1082)
104 PLN02366 spermidine synthase 93.6 0.67 1.4E-05 41.3 9.7 52 26-77 90-169 (308)
105 PRK00811 spermidine synthase; 93.5 0.38 8.3E-06 41.8 7.9 51 27-77 76-154 (283)
106 COG2227 UbiG 2-polyprenyl-3-me 93.0 0.19 4E-06 44.0 5.1 101 29-170 61-216 (243)
107 PRK14967 putative methyltransf 92.9 2.4 5.2E-05 35.0 11.4 118 25-167 34-182 (223)
108 PF06325 PrmA: Ribosomal prote 92.9 0.79 1.7E-05 40.8 9.0 50 127-177 235-291 (295)
109 PF01739 CheR: CheR methyltran 92.7 0.1 2.2E-06 43.6 3.0 50 57-145 117-169 (196)
110 KOG2361 Predicted methyltransf 92.3 0.7 1.5E-05 40.9 7.8 51 117-167 149-235 (264)
111 COG2890 HemK Methylase of poly 92.3 3.3 7.1E-05 36.2 12.0 129 30-177 113-272 (280)
112 PF08003 Methyltransf_9: Prote 92.3 1.9 4.1E-05 39.2 10.6 52 116-170 187-268 (315)
113 COG2264 PrmA Ribosomal protein 92.2 1.3 2.8E-05 39.8 9.5 50 127-176 239-295 (300)
114 TIGR03439 methyl_EasF probable 92.2 0.45 9.8E-06 42.7 6.6 31 115-145 160-191 (319)
115 KOG2899 Predicted methyltransf 91.8 1.3 2.8E-05 39.5 8.9 27 119-145 177-203 (288)
116 PRK10611 chemotaxis methyltran 91.6 0.25 5.4E-06 43.8 4.2 50 57-145 203-256 (287)
117 KOG1270 Methyltransferases [Co 90.7 0.5 1.1E-05 42.2 5.2 99 29-168 91-248 (282)
118 PRK13942 protein-L-isoaspartat 90.6 2 4.3E-05 35.6 8.5 60 16-77 67-149 (212)
119 TIGR00438 rrmJ cell division p 90.2 7.1 0.00015 31.2 11.1 40 130-170 125-171 (188)
120 TIGR00417 speE spermidine synt 89.1 3 6.6E-05 35.7 8.7 52 26-77 71-149 (270)
121 PF07942 N2227: N2227-like pro 89.1 2.1 4.6E-05 37.8 7.8 41 128-168 179-241 (270)
122 COG4262 Predicted spermidine s 89.0 1.4 3.1E-05 41.6 6.9 113 26-178 288-448 (508)
123 PRK14902 16S rRNA methyltransf 87.7 4.8 0.0001 37.0 9.5 121 17-168 242-407 (444)
124 PRK14121 tRNA (guanine-N(7)-)- 87.4 7.2 0.00016 36.2 10.5 50 28-77 123-196 (390)
125 PF05724 TPMT: Thiopurine S-me 87.0 1.4 3E-05 37.2 5.3 115 15-169 24-190 (218)
126 PRK13944 protein-L-isoaspartat 86.6 5.6 0.00012 32.6 8.5 53 25-77 70-146 (205)
127 COG4301 Uncharacterized conser 86.1 6.2 0.00013 35.6 8.9 29 117-145 159-187 (321)
128 PF04072 LCM: Leucine carboxyl 85.5 1.3 2.7E-05 35.9 4.1 87 25-138 76-183 (183)
129 PRK10901 16S rRNA methyltransf 85.3 10 0.00023 34.7 10.4 117 24-166 241-398 (427)
130 TIGR00080 pimt protein-L-isoas 84.1 7.6 0.00016 31.9 8.2 60 16-77 68-150 (215)
131 PRK14904 16S rRNA methyltransf 84.1 11 0.00024 34.8 10.0 113 27-165 250-402 (445)
132 PF07021 MetW: Methionine bios 84.0 5.6 0.00012 33.8 7.4 27 146-172 144-170 (193)
133 COG2521 Predicted archaeal met 83.6 2.1 4.6E-05 38.1 4.9 84 47-170 166-278 (287)
134 PF03291 Pox_MCEL: mRNA cappin 83.5 18 0.0004 32.6 11.0 29 117-145 150-180 (331)
135 PF05219 DREV: DREV methyltran 82.0 8 0.00017 34.4 7.9 42 131-172 168-243 (265)
136 PLN02781 Probable caffeoyl-CoA 81.2 18 0.0004 30.5 9.6 47 24-70 65-132 (234)
137 COG1352 CheR Methylase of chem 80.4 3.8 8.3E-05 36.1 5.4 29 117-145 207-235 (268)
138 PRK11088 rrmA 23S rRNA methylt 80.3 14 0.0003 31.5 8.6 51 27-77 85-155 (272)
139 PF04816 DUF633: Family of unk 79.2 16 0.00034 30.8 8.5 97 31-170 1-125 (205)
140 PRK13168 rumA 23S rRNA m(5)U19 78.0 10 0.00022 35.0 7.5 45 26-70 296-357 (443)
141 PRK00312 pcm protein-L-isoaspa 77.7 12 0.00027 30.3 7.3 52 24-77 75-148 (212)
142 TIGR00563 rsmB ribosomal RNA s 76.6 20 0.00044 32.8 9.1 33 131-163 348-391 (426)
143 PRK14903 16S rRNA methyltransf 75.5 22 0.00048 32.9 9.1 118 24-167 234-393 (431)
144 PF08123 DOT1: Histone methyla 75.4 7.1 0.00015 32.9 5.4 87 15-145 32-152 (205)
145 PRK14901 16S rRNA methyltransf 74.9 25 0.00053 32.4 9.2 115 25-165 250-409 (434)
146 KOG1975 mRNA cap methyltransfe 74.5 31 0.00068 32.1 9.6 29 117-145 201-231 (389)
147 PF13659 Methyltransf_26: Meth 74.4 6.4 0.00014 28.2 4.3 52 30-82 3-79 (117)
148 PF03514 GRAS: GRAS domain fam 74.4 7.8 0.00017 35.3 5.8 23 146-168 308-330 (374)
149 TIGR00478 tly hemolysin TlyA f 74.0 17 0.00036 31.1 7.4 30 146-175 194-225 (228)
150 KOG1271 Methyltransferases [Ge 72.9 14 0.00031 31.9 6.6 109 28-172 68-208 (227)
151 PF01564 Spermine_synth: Sperm 71.8 12 0.00025 32.1 5.9 103 27-173 76-225 (246)
152 PLN02476 O-methyltransferase 71.7 27 0.00059 30.9 8.3 49 24-72 115-184 (278)
153 PF06859 Bin3: Bicoid-interact 70.9 2 4.3E-05 33.5 0.9 49 123-171 16-94 (110)
154 PRK11727 23S rRNA mA1618 methy 70.7 45 0.00097 30.1 9.6 137 28-170 115-293 (321)
155 PF05430 Methyltransf_30: S-ad 68.2 12 0.00026 29.1 4.9 49 132-180 71-122 (124)
156 COG2519 GCD14 tRNA(1-methylade 67.3 73 0.0016 28.3 10.0 108 15-170 84-221 (256)
157 PRK00050 16S rRNA m(4)C1402 me 67.0 17 0.00037 32.4 6.2 141 15-160 9-186 (296)
158 PF05148 Methyltransf_8: Hypot 65.1 63 0.0014 28.1 9.0 50 130-179 137-195 (219)
159 PRK04148 hypothetical protein; 64.0 12 0.00026 29.8 4.2 60 15-77 6-81 (134)
160 PF01795 Methyltransf_5: MraW 62.7 24 0.00052 31.9 6.3 68 15-84 10-104 (310)
161 PF10294 Methyltransf_16: Puta 62.7 46 0.00099 26.7 7.4 94 25-159 43-172 (173)
162 PRK00536 speE spermidine synth 62.3 58 0.0013 28.6 8.5 48 27-77 72-143 (262)
163 PLN02823 spermine synthase 61.5 20 0.00043 32.4 5.6 51 27-77 103-180 (336)
164 smart00650 rADc Ribosomal RNA 60.8 24 0.00051 27.7 5.3 66 15-83 3-87 (169)
165 PRK11783 rlmL 23S rRNA m(2)G24 60.5 43 0.00094 33.0 8.1 112 27-169 538-680 (702)
166 KOG3045 Predicted RNA methylas 60.4 96 0.0021 28.3 9.5 47 133-179 246-301 (325)
167 PRK14896 ksgA 16S ribosomal RN 59.5 29 0.00062 29.5 6.0 67 15-84 19-102 (258)
168 COG0421 SpeE Spermidine syntha 59.3 17 0.00037 32.2 4.7 51 27-77 76-153 (282)
169 PF02153 PDH: Prephenate dehyd 57.2 36 0.00078 29.0 6.2 92 36-173 8-108 (258)
170 PRK03522 rumB 23S rRNA methylu 55.7 64 0.0014 28.2 7.7 42 28-69 174-232 (315)
171 PF01596 Methyltransf_3: O-met 54.8 36 0.00078 28.5 5.7 59 25-83 43-131 (205)
172 PRK00274 ksgA 16S ribosomal RN 54.0 24 0.00052 30.3 4.6 51 15-69 32-98 (272)
173 COG3963 Phospholipid N-methylt 53.9 80 0.0017 27.0 7.5 91 14-145 37-150 (194)
174 KOG2798 Putative trehalase [Ca 52.6 49 0.0011 30.7 6.5 42 127-168 272-336 (369)
175 PF10017 Methyltransf_33: Hist 50.5 26 0.00055 27.1 3.9 27 146-172 94-120 (127)
176 KOG4300 Predicted methyltransf 49.9 1.3E+02 0.0029 26.6 8.5 54 117-172 150-235 (252)
177 PF01234 NNMT_PNMT_TEMT: NNMT/ 49.1 23 0.0005 31.0 3.8 44 126-169 174-239 (256)
178 TIGR00479 rumA 23S rRNA (uraci 49.1 42 0.00092 30.5 5.7 45 25-69 290-351 (431)
179 TIGR00006 S-adenosyl-methyltra 48.1 50 0.0011 29.7 5.9 141 15-160 10-188 (305)
180 TIGR00755 ksgA dimethyladenosi 48.1 74 0.0016 26.8 6.6 52 15-70 19-87 (253)
181 PF07109 Mg-por_mtran_C: Magne 47.3 45 0.00098 25.4 4.7 36 146-181 59-97 (97)
182 PF09243 Rsm22: Mitochondrial 45.2 86 0.0019 27.2 6.7 49 117-165 107-164 (274)
183 PF03059 NAS: Nicotianamine sy 44.8 77 0.0017 28.2 6.4 113 29-181 122-271 (276)
184 PRK11760 putative 23S rRNA C24 43.5 86 0.0019 29.1 6.7 46 27-72 211-266 (357)
185 COG4627 Uncharacterized protei 42.7 14 0.0003 31.2 1.4 40 106-145 37-80 (185)
186 PF01135 PCMT: Protein-L-isoas 42.3 49 0.0011 27.8 4.7 81 16-100 63-166 (209)
187 PTZ00338 dimethyladenosine tra 41.4 67 0.0014 28.4 5.5 68 15-84 26-112 (294)
188 PF00540 Gag_p17: gag gene pro 39.4 19 0.00042 29.2 1.7 29 125-158 51-79 (140)
189 PF08002 DUF1697: Protein of u 39.4 36 0.00077 26.8 3.2 28 141-168 11-39 (137)
190 COG1189 Predicted rRNA methyla 38.9 2.8E+02 0.006 24.6 9.6 34 146-179 201-236 (245)
191 PF09860 DUF2087: Uncharacteri 38.7 65 0.0014 22.9 4.1 36 124-160 5-42 (71)
192 TIGR02085 meth_trns_rumB 23S r 38.2 82 0.0018 28.5 5.7 42 28-69 234-292 (374)
193 KOG1500 Protein arginine N-met 38.2 1.5E+02 0.0033 28.1 7.5 60 16-77 168-247 (517)
194 PF14740 DUF4471: Domain of un 37.4 14 0.00031 33.0 0.7 53 106-166 217-286 (289)
195 PRK13943 protein-L-isoaspartat 36.6 1.5E+02 0.0032 26.6 7.1 53 25-77 78-153 (322)
196 KOG1541 Predicted protein carb 36.5 1.5E+02 0.0033 26.5 6.8 55 16-73 39-108 (270)
197 PRK15128 23S rRNA m(5)C1962 me 36.5 1.3E+02 0.0027 27.8 6.7 101 27-160 220-356 (396)
198 COG0293 FtsJ 23S rRNA methylas 32.9 59 0.0013 27.8 3.7 49 16-69 35-96 (205)
199 PF07927 YcfA: YcfA-like prote 32.8 49 0.0011 21.4 2.6 18 150-167 1-18 (56)
200 KOG2918 Carboxymethyl transfer 32.8 2.5E+02 0.0053 26.0 7.8 56 115-170 191-278 (335)
201 COG4808 Uncharacterized protei 31.2 88 0.0019 25.7 4.2 41 125-165 69-151 (152)
202 TIGR00446 nop2p NOL1/NOP2/sun 30.8 3.4E+02 0.0073 23.1 10.5 58 26-83 70-150 (264)
203 PLN02589 caffeoyl-CoA O-methyl 30.6 1.2E+02 0.0027 26.2 5.3 48 25-72 77-145 (247)
204 PF01861 DUF43: Protein of unk 29.2 4E+02 0.0087 23.5 9.9 100 29-172 46-181 (243)
205 COG5459 Predicted rRNA methyla 27.8 25 0.00054 33.3 0.6 29 117-145 191-219 (484)
206 KOG1331 Predicted methyltransf 27.6 1.8E+02 0.0038 26.5 5.9 79 28-145 46-137 (293)
207 PF02527 GidB: rRNA small subu 26.8 52 0.0011 27.2 2.3 47 30-77 51-119 (184)
208 PF06968 BATS: Biotin and Thia 24.9 1.3E+02 0.0029 21.8 3.9 40 124-163 18-92 (93)
209 COG0357 GidB Predicted S-adeno 24.5 61 0.0013 27.8 2.4 52 28-80 68-142 (215)
210 COG1743 Adenine-specific DNA m 24.5 93 0.002 32.0 3.9 68 105-172 531-619 (875)
211 PF00398 RrnaAD: Ribosomal RNA 24.3 1.4E+02 0.0031 25.3 4.6 54 14-69 19-87 (262)
212 PRK09019 translation initiatio 24.3 3.2E+02 0.0069 21.2 6.1 54 110-165 42-104 (108)
213 PF14014 DUF4230: Protein of u 23.5 90 0.0019 24.1 3.0 43 125-167 103-155 (157)
214 PF07091 FmrO: Ribosomal RNA m 23.4 1.9E+02 0.0041 25.6 5.3 59 19-77 94-175 (251)
215 PF05185 PRMT5: PRMT5 arginine 22.1 1.1E+02 0.0024 28.8 3.8 50 28-77 187-262 (448)
216 PF07308 DUF1456: Protein of u 22.0 1.4E+02 0.0031 21.0 3.5 31 124-161 13-43 (68)
217 COG4798 Predicted methyltransf 21.8 1.7E+02 0.0037 25.7 4.5 42 127-168 142-204 (238)
218 PF01206 TusA: Sulfurtransfera 21.5 2.3E+02 0.0049 18.9 4.3 39 135-173 18-63 (70)
219 PRK06824 translation initiatio 21.0 3.3E+02 0.0071 21.4 5.6 54 110-165 52-114 (118)
220 PRK07451 translation initiatio 20.6 3.4E+02 0.0075 21.2 5.7 53 111-165 50-111 (115)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.95 E-value=3.9e-28 Score=201.65 Aligned_cols=117 Identities=30% Similarity=0.533 Sum_probs=104.8
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|+..++....+.+++.+ ||++.++||||| +||+++++++|+|+|++.+...+||++++||||
T Consensus 76 f~~~m~~~~~~~~~~~~~~~~--d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f 153 (241)
T PF00891_consen 76 FNAAMAEYSRLNAFDILLEAF--DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF 153 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT
T ss_pred HHHHHHhhhhcchhhhhhccc--cccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH
Confidence 678898777766546678888 899999999999 999999999999999999888999999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccC--C-
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSK--A- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~--g- 145 (181)
+++|.+|+| +|++|||+|+|++|++||++++.||+|| |
T Consensus 154 ~~~P~~D~~---------------------------------------~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 154 DPLPVADVY---------------------------------------LLRHVLHDWSDEDCVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp TCCSSESEE---------------------------------------EEESSGGGS-HHHHHHHHHHHHHHSEECTTEE
T ss_pred hhhccccce---------------------------------------eeehhhhhcchHHHHHHHHHHHHHhCCCCCCe
Confidence 999999999 9999999999999999999999999998 7
Q ss_pred ----------------------------------ccCCHHHHHHHHH
Q 036440 146 ----------------------------------KLSTEKELESLFV 158 (181)
Q Consensus 146 ----------------------------------~eRt~~E~~~Ll~ 158 (181)
++||.+||++||.
T Consensus 195 llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred EEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 9999999999984
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.94 E-value=1.9e-27 Score=212.41 Aligned_cols=140 Identities=31% Similarity=0.388 Sum_probs=133.2
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccC-CCceEEecCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDT-NNLKYLADDF 67 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~-~ri~~~~gDf 67 (181)
||++|...+.... ..+++.|. .|+++.++|||| .||++++++||+|+|++.+..- +.|+++.|||
T Consensus 153 ~~~sm~~l~~~~~-~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm 230 (342)
T KOG3178|consen 153 FNGSMSFLSTLVM-KKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM 230 (342)
T ss_pred HHHHHHHHHHHHH-Hhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence 6889999998888 88999997 599999999999 9999999999999999999865 8899999999
Q ss_pred CCCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--
Q 036440 68 FQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-- 145 (181)
Q Consensus 68 f~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-- 145 (181)
|+++|.+|+| +|++|||||+|++|++||+||.++++|+|
T Consensus 231 fq~~P~~daI---------------------------------------~mkWiLhdwtDedcvkiLknC~~sL~~~GkI 271 (342)
T KOG3178|consen 231 FQDTPKGDAI---------------------------------------WMKWILHDWTDEDCVKILKNCKKSLPPGGKI 271 (342)
T ss_pred cccCCCcCeE---------------------------------------EEEeecccCChHHHHHHHHHHHHhCCCCCEE
Confidence 9989999999 99999999999999999999999999999
Q ss_pred -----------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 146 -----------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 146 -----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
+|||.+||+.++.++||...++.-.+...++||++|
T Consensus 272 iv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 272 IVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred EEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999988899999986
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.78 E-value=2.2e-18 Score=148.42 Aligned_cols=125 Identities=14% Similarity=0.266 Sum_probs=104.3
Q ss_pred HHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhc-------cCCCceEE
Q 036440 3 QAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLL-------DTNNLKYL 63 (181)
Q Consensus 3 ~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~ 63 (181)
.+|+..+....++.+++.. ++++..++|||| +||+++++++|+|++++.++ ..+||+++
T Consensus 127 ~~~~~~~~~~~~~~l~~~~--~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~ 204 (306)
T TIGR02716 127 EEIHRSNAKFAIQLLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGI 204 (306)
T ss_pred HHHHHhcchhHHHHHHHHc--CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEE
Confidence 4444333222226677887 799999999999 89999999999999988664 36799999
Q ss_pred ecCCCC-CCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhc
Q 036440 64 ADDFFQ-SIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAIT 142 (181)
Q Consensus 64 ~gDff~-~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~ 142 (181)
++|+|+ ++|.+|+| +++++||+|+++.+.++|++++++|+
T Consensus 205 ~~d~~~~~~~~~D~v---------------------------------------~~~~~lh~~~~~~~~~il~~~~~~L~ 245 (306)
T TIGR02716 205 AVDIYKESYPEADAV---------------------------------------LFCRILYSANEQLSTIMCKKAFDAMR 245 (306)
T ss_pred ecCccCCCCCCCCEE---------------------------------------EeEhhhhcCChHHHHHHHHHHHHhcC
Confidence 999995 57778999 89999999999999999999999999
Q ss_pred cCC----------------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 143 SKA----------------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 143 ~~g----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
||| .-++.+||+++|++|||+.++++
T Consensus 246 pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 246 SGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEec
Confidence 999 12346899999999999998764
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.76 E-value=6.5e-08 Score=80.52 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=82.4
Q ss_pred cCCCeEEEec--------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC-CCCCcceEecccc
Q 036440 26 ERLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ-SIPPVCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~-~~P~~d~~~~~~~ 82 (181)
..-.+|||+| .+|+.+.+.+|+ |..++.+.. ..+++++.+|+.+ +.|..|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v----- 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMV----- 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEE-----
Confidence 3556899999 258999999999 788776642 3589999999986 35557777
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
+...++|.+++++..++|++++.+++|||
T Consensus 127 ----------------------------------~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~ 172 (239)
T TIGR00740 127 ----------------------------------ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH 172 (239)
T ss_pred ----------------------------------eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH
Confidence 66777888888778888888888888888
Q ss_pred -------------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 -------------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 -------------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..|.+|++.++++|||+.+.+.
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~ 226 (239)
T TIGR00740 173 LLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVELW 226 (239)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHHH
Confidence 24688999999999999976543
No 5
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.67 E-value=2.2e-07 Score=78.42 Aligned_cols=103 Identities=12% Similarity=0.219 Sum_probs=82.0
Q ss_pred cCCCeEEEec--------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC-CCCCcceEecccc
Q 036440 26 ERLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ-SIPPVCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~-~~P~~d~~~~~~~ 82 (181)
..-.+|+||| .+|..+.+.+|. |..++.+.. .++++++.+|+.+ +.|..|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v----- 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMV----- 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEE-----
Confidence 3457899999 268999999998 788776642 4589999999875 34457877
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
++..++|-.++++..++|++++.+++|||
T Consensus 130 ----------------------------------v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~ 175 (247)
T PRK15451 130 ----------------------------------VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 175 (247)
T ss_pred ----------------------------------ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHH
Confidence 66677787777777888888888888888
Q ss_pred -------------------------------ccCCHHHHHHHHHhCCCeEEEE
Q 036440 146 -------------------------------KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 146 -------------------------------~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
+.-|.++..+||++|||+.+.+
T Consensus 176 ~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 176 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 4568999999999999987654
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.59 E-value=1.9e-06 Score=70.71 Aligned_cols=122 Identities=13% Similarity=0.178 Sum_probs=81.3
Q ss_pred HHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC--
Q 036440 17 ALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP-- 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~-- 73 (181)
+++.. +...-.+|||+| . .|..+.+.+|+ |..++.+.. .++++++.+|..+ ++|.
T Consensus 37 ~l~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 37 TMKRM--NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 44444 445557999999 3 47789999999 566654431 3589999999876 3443
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------- 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------- 145 (181)
.|++ ++...+|..++- .++|+++...++|||
T Consensus 115 fD~V---------------------------------------~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 115 FDYV---------------------------------------TIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred ccEE---------------------------------------EEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECC
Confidence 5777 444444444433 245555555555555
Q ss_pred -----------------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC-CCCeEEEEEC
Q 036440 146 -----------------------------------------KLSTEKELESLFVEVHFHHYKITPLF-GLPSLIEVYP 181 (181)
Q Consensus 146 -----------------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~-~~~~viE~~~ 181 (181)
+-.|.+|++++|+++||+++++.+.. |..+++-+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 154 QPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred CCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 22466899999999999999998876 5556665554
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.56 E-value=1.3e-06 Score=74.75 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=88.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCC-CCCC--cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQ-SIPP--VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~-~~P~--~d 75 (181)
..+++.. .+..-.+||||| +..+.+.+.+|+ |..++.+.. .++++++.+|+.+ ++|. .|
T Consensus 42 ~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDI--ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 5566666 566778999999 223568999998 455555432 4689999999985 4554 58
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------- 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------- 145 (181)
++ +....+|.+++++..++|++++..++|||
T Consensus 120 ~V---------------------------------------~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 120 MI---------------------------------------YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred EE---------------------------------------EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 88 66666666777778889999999999998
Q ss_pred ------------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 ------------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 ------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
...+.++|.++|+++||+++....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 161 KIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred cccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 12477999999999999999887653
No 8
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.47 E-value=6.5e-06 Score=66.66 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCeEEEec------------CCC-CceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC-CC--CcceEecccc
Q 036440 27 RLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS-IP--PVCMIPLRLG 82 (181)
Q Consensus 27 ~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~-~P--~~d~~~~~~~ 82 (181)
.-.+++|+| .+| ..+.+.+|+ |..++.+.. .+++++..+|+.+. .+ ..|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I----- 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAV----- 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEE-----
Confidence 346899999 566 689999998 455554432 36799999999863 22 25777
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
++..++|.+++. ..+|+++...++++|
T Consensus 126 ----------------------------------~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 126 ----------------------------------TIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred ----------------------------------EEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 455555555543 345666666666665
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEEEc-CCCCeEEEEEC
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKITPL-FGLPSLIEVYP 181 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~-~~~~~viE~~~ 181 (181)
...|.++|..+|+++||+.+++... .+..+++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 1236788999999999999999875 46778888764
No 9
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.45 E-value=6e-06 Score=66.19 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=81.5
Q ss_pred cCCCeEEEec------------CCCC-ceEEEeec-hhhhhhhc----cCCCceEEecCCCCC-CCC--cceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPC-VKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQS-IPP--VCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~-l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~~-~P~--~d~~~~~~~~~ 84 (181)
..-.+++|+| ++|. .+.+.+|. |..++.+. ..++++++.+|+.+. .+. .|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i------- 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAV------- 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEE-------
Confidence 3457999999 5676 78999998 55555543 246899999999863 332 5777
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
++...+|...+ ...+|+++...++|||
T Consensus 111 --------------------------------~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~ 156 (223)
T TIGR01934 111 --------------------------------TIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLKKFY 156 (223)
T ss_pred --------------------------------EEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHH
Confidence 55555555544 3356666666666666
Q ss_pred ------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCC-CCeEEEEEC
Q 036440 146 ------------------------------KLSTEKELESLFVEVHFHHYKITPLFG-LPSLIEVYP 181 (181)
Q Consensus 146 ------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~-~~~viE~~~ 181 (181)
...+.+||+.+|+++||+.+++.+..+ ...++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 157 KFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 112678899999999999999988865 467888765
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.33 E-value=8.3e-06 Score=68.63 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCCCCC--CcceEec
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQSIP--PVCMIPL 79 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~~~P--~~d~~~~ 79 (181)
..+++.+ ....-.+|||+| ++|+.+.+.+|+ |..++.+.. .+++++.+|+.+-.| ..|++..
T Consensus 19 ~~ll~~l--~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARV--GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 4566666 456668999999 679999999999 677777654 478999999864322 3688844
Q ss_pred cccchh
Q 036440 80 RLGYSH 85 (181)
Q Consensus 80 ~~~~~~ 85 (181)
+..+.+
T Consensus 96 ~~~l~~ 101 (255)
T PRK14103 96 NAALQW 101 (255)
T ss_pred ehhhhh
Confidence 444333
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.30 E-value=7e-06 Score=73.90 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=83.4
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCC-CCCC--cceEeccccchhhhH
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~ 88 (181)
-.+|||+| .+|..+.+.+|+ |+.++.+.. ..+++++.+|+.+ ++|. .|++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvV----------- 182 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRY----------- 182 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEE-----------
Confidence 46899999 567788999998 566665543 4589999999875 3443 5888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc----------------------
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK---------------------- 146 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~---------------------- 146 (181)
+....+|.|+|.+ ++|+++++.++|||+
T Consensus 183 ----------------------------Is~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~ 232 (340)
T PLN02490 183 ----------------------------VSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM 232 (340)
T ss_pred ----------------------------EEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc
Confidence 7888899999875 589999999999991
Q ss_pred -cCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 147 -LSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 147 -eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
-.+.+|+.++|+++||+.+++..+..
T Consensus 233 ~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 233 LFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 24789999999999999999887654
No 12
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.24 E-value=1.1e-05 Score=64.72 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=81.6
Q ss_pred HhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEec
Q 036440 5 VASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLAD 65 (181)
Q Consensus 5 M~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~g 65 (181)
|...+.......+++.. +...-.++||+| ++|+.+.+.+|. |..++.+.. .++++++.+
T Consensus 11 ~~~~~~~~~r~~~~~~l--~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~ 88 (187)
T PRK08287 11 KVPMTKEEVRALALSKL--ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG 88 (187)
T ss_pred CCCCchHHHHHHHHHhc--CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec
Confidence 44444444312234455 456678999999 689999999999 666665532 257899999
Q ss_pred CCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccC
Q 036440 66 DFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSK 144 (181)
Q Consensus 66 Dff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~ 144 (181)
|....++. .|++ ++....+. -..+++.+...++|+
T Consensus 89 d~~~~~~~~~D~v---------------------------------------~~~~~~~~-----~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 89 EAPIELPGKADAI---------------------------------------FIGGSGGN-----LTAIIDWSLAHLHPG 124 (187)
T ss_pred CchhhcCcCCCEE---------------------------------------EECCCccC-----HHHHHHHHHHhcCCC
Confidence 87655544 5776 33332222 245889999999999
Q ss_pred C-------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 145 A-------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 145 g-------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
| ..-+.++...++++.||+.+++.
T Consensus 125 G~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 125 GRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred eEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 9 34577889999999999877654
No 13
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.22 E-value=1.5e-05 Score=65.01 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=77.0
Q ss_pred CeEEEec------------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCCC-CCC-cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQS-IPP-VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~~ 86 (181)
++||||| .+|+.+.+.+|+- ..++.+. ..++++++.+|+.+. .|. .|.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I--------- 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLV--------- 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEe---------
Confidence 3689999 6788899999984 3434332 367899999999754 333 6777
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc--------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------------------- 146 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~-------------------- 146 (181)
+...++|..+|. ..+|++++..++|||+
T Consensus 72 ------------------------------~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 119 (224)
T smart00828 72 ------------------------------FGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETT 119 (224)
T ss_pred ------------------------------ehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccCccccccccc
Confidence 666777777663 5799999999999981
Q ss_pred --cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 147 --LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 147 --eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..|.++|.++++++||+.++....
T Consensus 120 ~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 120 SYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred cccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 236789999999999999987765
No 14
>PLN03075 nicotianamine synthase; Provisional
Probab=98.20 E-value=2.1e-05 Score=69.92 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=82.0
Q ss_pred CCCeEEEec--------------CCCCceEEEeec-hhhhhhhc--------cCCCceEEecCCCCCCC---CcceEecc
Q 036440 27 RLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLL--------DTNNLKYLADDFFQSIP---PVCMIPLR 80 (181)
Q Consensus 27 ~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~--------~~~ri~~~~gDff~~~P---~~d~~~~~ 80 (181)
..++|+||| .+|..+++.+|. |..++.|+ .++|++|..+|..+..+ .-|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV--- 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV--- 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE---
Confidence 568999999 579999999998 44554432 36899999999987543 25888
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--ccCCHHHHHHHH-
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--KLSTEKELESLF- 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--~eRt~~E~~~Ll- 157 (181)
++. +||+|+.++-.++|++++..|+||| -.|+..-.+.+|
T Consensus 200 ------------------------------------F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LY 242 (296)
T PLN03075 200 ------------------------------------FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY 242 (296)
T ss_pred ------------------------------------EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcC
Confidence 777 9999999999999999999999999 111111111111
Q ss_pred ------HhCCCeEEEEE-EcCCC-CeEEEEE
Q 036440 158 ------VEVHFHHYKIT-PLFGL-PSLIEVY 180 (181)
Q Consensus 158 ------~~aGf~~~~i~-~~~~~-~~viE~~ 180 (181)
.-.||+...+. |.+.. .|||-++
T Consensus 243 p~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r 273 (296)
T PLN03075 243 PVVDPCDLRGFEVLSVFHPTDEVINSVIIAR 273 (296)
T ss_pred CCCChhhCCCeEEEEEECCCCCceeeEEEEE
Confidence 11299987665 65543 5777665
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.18 E-value=5.9e-05 Score=64.55 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=78.5
Q ss_pred cCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc---------CCCceEEecCCCC-CCCC--cceEec
Q 036440 26 ERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD---------TNNLKYLADDFFQ-SIPP--VCMIPL 79 (181)
Q Consensus 26 ~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~---------~~ri~~~~gDff~-~~P~--~d~~~~ 79 (181)
..-.+++|+| . .|..+.+.+|. |..++.+.. .++++++.+|..+ ++|. .|.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V-- 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI-- 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE--
Confidence 3456899999 3 35678999998 456655531 3589999999865 3443 5888
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc-------------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK------------- 146 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~------------- 146 (181)
++...||.++|. .+.|++++..++|||+
T Consensus 150 -------------------------------------~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~ 190 (261)
T PLN02233 150 -------------------------------------TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPF 190 (261)
T ss_pred -------------------------------------EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHH
Confidence 667777777653 4578888888888871
Q ss_pred -----------------------------------cCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 147 -----------------------------------LSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 147 -----------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
-.|.+|+.++|+++||+.++.....+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g 252 (261)
T PLN02233 191 TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGG 252 (261)
T ss_pred HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 248899999999999999988876543
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.14 E-value=7.3e-06 Score=69.68 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=52.6
Q ss_pred cCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC--cceEecccc
Q 036440 26 ERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP--VCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~--~d~~~~~~~ 82 (181)
..-.+|||+| ..|..+.+..|+ |..++.+.. ..+|+++.+|.-+ ++|. .|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v----- 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAV----- 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEE-----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEE-----
Confidence 3446999999 357789999998 556665542 3599999999986 4554 5888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
.+...||+.+|-+ +.|+.++..++|||
T Consensus 121 ----------------------------------~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 121 ----------------------------------TCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp ----------------------------------EEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred ----------------------------------EHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 7788888888744 47899999999998
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC-CCCeE
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKITPLF-GLPSL 176 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~-~~~~v 176 (181)
+-.+.+|+.++|+++||+.++..++. |...+
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i 228 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTI 228 (233)
T ss_dssp HHHH------------------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56688999999999999999987664 43443
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.12 E-value=3.8e-05 Score=70.11 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=79.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeech-hhhhhhc-----cCCCceEEecCCCCC-CCC--c
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQP-HVVANLL-----DTNNLKYLADDFFQS-IPP--V 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~-----~~~ri~~~~gDff~~-~P~--~ 74 (181)
..+++.. .++.-.+||||| ..++.+.+.+|+- ..++.+. ...++++..+|+++. +|. .
T Consensus 256 e~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKL--DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhc--CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 4566666 456667999999 3347789999994 5555442 246899999999864 554 5
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------- 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------- 145 (181)
|++ +...++|.+.|. .++|+.++..++|||
T Consensus 334 D~I---------------------------------------~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 334 DVI---------------------------------------YSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EEE---------------------------------------EECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEecc
Confidence 887 444455555443 356666677777666
Q ss_pred ------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.+++.++++++||.++.+..
T Consensus 373 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 373 SPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 467899999999999999987654
No 18
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.06 E-value=6.4e-05 Score=65.57 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=59.9
Q ss_pred CCCeEEEec------------CCC-CceEEEeechh-hhhhhcc-------CCCceEEecCCCCC--CCC-c---ceEec
Q 036440 27 RLGSLVDVG------------AFP-CVKCTEFDQPH-VVANLLD-------TNNLKYLADDFFQS--IPP-V---CMIPL 79 (181)
Q Consensus 27 ~~~~lvDvG------------~~P-~l~~~~~DlP~-Vv~~a~~-------~~ri~~~~gDff~~--~P~-~---d~~~~ 79 (181)
...+|||+| +.+ ..+.+.+|+.. .++.+.. .-+|..+.+||.+. +|. . +.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~-- 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL-- 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE--
Confidence 446899999 555 68899999964 4444421 23466789999864 332 1 111
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++++...+|+++++++.++|++++++|+|||
T Consensus 141 -----------------------------------~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 141 -----------------------------------GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred -----------------------------------EEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence 2277788999999999999999999999999
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=98.02 E-value=0.0001 Score=65.49 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=35.6
Q ss_pred cCCCeEEEec------------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCC-CCCC--cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
+.-.+||||| ++ +.+.+.+|+- ..++.+. ..++++++.+|+.+ ++|. .|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEE
Confidence 3457899999 35 6788999984 4444332 24689999999876 3443 5777
No 20
>PRK08317 hypothetical protein; Provisional
Probab=97.99 E-value=0.00013 Score=58.49 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=71.7
Q ss_pred HHHHhhhhhcCCCeEEEec------------CC-CCceEEEeech-hhhhhhc-----cCCCceEEecCCCC-CCCC--c
Q 036440 17 ALKYCKQIFERLGSLVDVG------------AF-PCVKCTEFDQP-HVVANLL-----DTNNLKYLADDFFQ-SIPP--V 74 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~~-P~l~~~~~DlP-~Vv~~a~-----~~~ri~~~~gDff~-~~P~--~ 74 (181)
+++.. ++..-.+|||+| .+ |..+.+.+|+- ..++.+. ..+++++..+|+.+ +++. .
T Consensus 11 ~~~~~--~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHc--CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 44555 466667999999 44 78899999984 4444332 25689999999875 3433 5
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------- 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------- 145 (181)
|.+ ++..++|.+.|. ..+|++++..++|||
T Consensus 89 D~v---------------------------------------~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 89 DAV---------------------------------------RSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred eEE---------------------------------------EEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCC
Confidence 877 455555555443 234555555555555
Q ss_pred -------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 -------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 -------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+..++.++|+++||.++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 175 (241)
T PRK08317 128 DTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEVE 175 (241)
T ss_pred CceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeEE
Confidence 22345689999999999987664
No 21
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.94 E-value=2.4e-05 Score=67.00 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=49.2
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKITPLFGLP 174 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~ 174 (181)
++++++-..+|++.++.|++|.++++|+| -+||.+.|++||++||+++++...-.+.|
T Consensus 127 W~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 127 WIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp EEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--
T ss_pred EehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC
Confidence 99999999999999999999999999999 78999999999999999999877655543
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.92 E-value=0.00017 Score=58.96 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=83.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC-cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP-VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~-~d 75 (181)
+.+++.+ ....-.++||+| +-.+.+++.+|+ |..++.+.. ..++++...|+.+. ++. .|
T Consensus 20 ~~l~~~l--~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 20 SEVLEAV--KVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred HHHHHhc--ccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence 6777777 455558999999 333568899999 555554431 24588888998753 333 68
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc---------
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK--------- 146 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~--------- 146 (181)
++ +...++|.+++++..+++++++++++|||+
T Consensus 98 ~I---------------------------------------~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~ 138 (197)
T PRK11207 98 FI---------------------------------------LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 138 (197)
T ss_pred EE---------------------------------------EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 88 777888988999999999999999999992
Q ss_pred -----------cCCHHHHHHHHHhCCCeEEEE
Q 036440 147 -----------LSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 147 -----------eRt~~E~~~Ll~~aGf~~~~i 167 (181)
..+.+|+.++++ ||+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 139 ADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 236788999887 9988776
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.91 E-value=4.1e-05 Score=55.42 Aligned_cols=79 Identities=18% Similarity=0.392 Sum_probs=61.2
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCC-CC--CCCCcceEeccccchh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDF-FQ--SIPPVCMIPLRLGYSH 85 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDf-f~--~~P~~d~~~~~~~~~~ 85 (181)
.+|+|+| .+|+.+.+.+|. |..++.+. ..+||+++.+|+ +. ..+..|++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v-------- 74 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLV-------- 74 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEE--------
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEE--------
Confidence 5799999 479999999999 77776553 378999999999 32 23347888
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeee-eeccCCh-HHHHHHHHHHHHHhccCCc
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQI-IIHVFGD-EESVKILKICREAITSKAK 146 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-iLHdw~D-~~~~~iL~~~~~a~~~~g~ 146 (181)
++.. .+|.+.+ ++..++|+++++.++|||+
T Consensus 75 -------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 75 -------------------------------ICSGFTLHFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp -------------------------------EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred -------------------------------EECCCccccccchhHHHHHHHHHHHhcCCCcE
Confidence 5666 4554333 7888999999999999984
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.90 E-value=8.6e-05 Score=62.62 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=69.6
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC--CCCC--cceEeccccch
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ--SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~--~~P~--~d~~~~~~~~~ 84 (181)
.-.+|+|+| +-.+.+.+.+|+ |..++.+.. .++++++.+|+.+ +.+. .|++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V------- 116 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLI------- 116 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEE-------
Confidence 446899999 223567899998 677766542 4689999999864 2332 5888
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
++..+||...|.. ++|+++...++|||
T Consensus 117 --------------------------------~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~ 162 (255)
T PRK11036 117 --------------------------------LFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVA 162 (255)
T ss_pred --------------------------------EehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHc
Confidence 4555555444332 45555566666655
Q ss_pred ---------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+++.++|+++||+++.+.-+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 163 GNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred cChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeE
Confidence 1246799999999999999876543
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.89 E-value=0.00018 Score=60.94 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=75.2
Q ss_pred hcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC--cceEeccc
Q 036440 25 FERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP--VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~--~d~~~~~~ 81 (181)
...-.+|||+| ..|..+.+.+|. |..++.++. .+++++..+|+.+ ++|. .|++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~V---- 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVI---- 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEE----
Confidence 33446999999 246668899998 666666542 3588999999865 3443 4777
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------- 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------- 145 (181)
+...++|.++|. .++|+.+...++|||
T Consensus 151 -----------------------------------i~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~ 193 (272)
T PRK11873 151 -----------------------------------ISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGELPEE 193 (272)
T ss_pred -----------------------------------EEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCCCHH
Confidence 556666666554 357788888888887
Q ss_pred -------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 -------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 -------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.+|+.++|+++||..+++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 194 IRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 235788999999999999987753
No 26
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.84 E-value=0.00086 Score=53.48 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=81.1
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCCC-cceEeccccchhhh
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIPP-VCMIPLRLGYSHIK 87 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P~-~d~~~~~~~~~~~~ 87 (181)
...+++|+| ..+ +.+.+|+ |..++.+.. ..+++++.+|+++..+. .|.+..+.-|.+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 346899999 444 7888897 666655432 34688899999875443 68884443321110
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC--ChHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHH
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF--GDEESVKILKICREAITSKA-------KLSTEKELESLFV 158 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw--~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~ 158 (181)
.. ... -+|. ...+|.= +-+-..++|+.+...++|+| ..+...++..+|+
T Consensus 97 ~~----------~~~---~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~ 154 (179)
T TIGR00537 97 DD----------LRR---GDWL---------DVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLD 154 (179)
T ss_pred ch----------hcc---cchh---------hhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHH
Confidence 00 000 0000 0111110 11124578999999999999 4445889999999
Q ss_pred hCCCeEEEEEEcCCCCeEEEEEC
Q 036440 159 EVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 159 ~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++||....+..-.-+.--+++|+
T Consensus 155 ~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 155 ERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred hCCCeEEEEEEeecCceEEEEEE
Confidence 99999888877666666666653
No 27
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.83 E-value=0.00031 Score=57.19 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=69.6
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCC-CcceEeccccchhh
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIP-PVCMIPLRLGYSHI 86 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P-~~d~~~~~~~~~~~ 86 (181)
..-.+||||| +--+.+.+..|+ |..++.+.. .+++++..+| ++..+ ..|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v--------- 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTV--------- 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEE---------
Confidence 3456899999 111345889998 555555532 3589999999 44332 36777
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
+...++|.|+++...++++++....+.++
T Consensus 132 ------------------------------~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 181 (230)
T PRK07580 132 ------------------------------VCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLF 181 (230)
T ss_pred ------------------------------EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhcccc
Confidence 45555555666665566655544332211
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
...+.+++..+++++||++.++.+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 182 PGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISS 217 (230)
T ss_pred CCccCCCCccccCHHHHHHHHHHCCCceEeeeeccc
Confidence 344788999999999999999887653
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.82 E-value=0.0004 Score=58.10 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=45.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCC--CcceE
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIP--PVCMI 77 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P--~~d~~ 77 (181)
..+++.. ..+...+++|+| .+|+.+.+.+|. |..++.+.. .+++++..+|+.+-.| ..|++
T Consensus 21 ~~ll~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 21 RDLLARV--PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHhhC--CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 5666666 566778999999 778999999999 566666643 4678999999865333 36877
No 29
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.82 E-value=0.00028 Score=57.87 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=35.3
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCCcceE
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPPVCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~~d~~ 77 (181)
..-.+++|+| +-.+.+.+.+|. |..++.+.. .+++++..+|+.+.....|++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~i 123 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIV 123 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEE
Confidence 3467899999 223457889997 556655532 258999999987643446776
No 30
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.79 E-value=0.00038 Score=61.69 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=71.2
Q ss_pred CeEEEec------------CCCCceEEEeechhh-hhh--h-----ccCCCceEEecCCCC-CCCC-cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQPHV-VAN--L-----LDTNNLKYLADDFFQ-SIPP-VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP~V-v~~--a-----~~~~ri~~~~gDff~-~~P~-~d~~~~~~~~~~~ 86 (181)
++|+||| ..|. +++.+|.-.. +.. + ....+|.++.+|+-+ +.+. .|++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V--------- 193 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTV--------- 193 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEE---------
Confidence 7999999 4444 4899995432 221 1 124589999998864 2223 5887
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
+...+||...|- ..+|++++..++|||
T Consensus 194 ------------------------------~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~ 241 (322)
T PRK15068 194 ------------------------------FSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD 241 (322)
T ss_pred ------------------------------EECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh
Confidence 566677666554 357899999999988
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
-.+|.+++..+|+++||+++++...
T Consensus 242 ~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 242 RYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred HHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 1348899999999999999988754
No 31
>PRK06202 hypothetical protein; Provisional
Probab=97.79 E-value=0.00043 Score=57.37 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred cCCCeEEEec----------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecC--CCCCCC-CcceEecccc
Q 036440 26 ERLGSLVDVG----------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADD--FFQSIP-PVCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG----------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gD--ff~~~P-~~d~~~~~~~ 82 (181)
++..+|+|+| ..|..+.+.+|+ |+.++.+.. .+++++...| -+...+ ..|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V----- 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVV----- 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEE-----
Confidence 3456899999 146679999998 677776653 2445554443 332222 26888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhcc-------------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITS------------------- 143 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~------------------- 143 (181)
+...+||..+|++..++|+.++...+.
T Consensus 134 ----------------------------------~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl~~~~~~~~~~~~ 179 (232)
T PRK06202 134 ----------------------------------TSNHFLHHLDDAEVVRLLADSAALARRLVLHNDLIRSRLAYALFWA 179 (232)
T ss_pred ----------------------------------EECCeeecCChHHHHHHHHHHHHhcCeeEEEeccccCHHHHHHHHH
Confidence 777888888888777888887665532
Q ss_pred -------C------C-----ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 144 -------K------A-----KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 144 -------~------g-----~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+ + +-.|.+|+.+++++ ||++..+++.
T Consensus 180 ~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 180 GTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEeccce
Confidence 0 1 56689999999999 9999888765
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.71 E-value=0.00017 Score=55.84 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=57.3
Q ss_pred CCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC-----CcceEeccc
Q 036440 27 RLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP-----PVCMIPLRL 81 (181)
Q Consensus 27 ~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P-----~~d~~~~~~ 81 (181)
+-.+|+|+| .+|..+.+.+|+ |..++.+.. .+++++..+|+++ +| ..|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I---- 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDII---- 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEE----
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEE----
Confidence 446899999 488999999998 566665542 4589999999998 54 37888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+...++|.+.+.. .+|++++..++++|
T Consensus 78 -----------------------------------~~~~~l~~~~~~~--~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 78 -----------------------------------ISNGVLHHFPDPE--KVLKNIIRLLKPGG 104 (152)
T ss_dssp -----------------------------------EEESTGGGTSHHH--HHHHHHHHHEEEEE
T ss_pred -----------------------------------EEcCchhhccCHH--HHHHHHHHHcCCCc
Confidence 5666666666654 46777777777776
No 33
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.70 E-value=0.00041 Score=57.06 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=77.8
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
..+++|+| .+|+.+.+.+|. |..++.+.. .++++++.+|+++.+|. .|.+..+.-|...
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence 35899999 679999999997 666655532 34799999999987654 5877444333111
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc--CChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV--FGDEESVKILKICREAITSKA------KLSTEKELESLFV 158 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd--w~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~ 158 (181)
...-.. .-....+-. ...+.. -.-+....+++++...++||| .....++++++|+
T Consensus 168 ~~~~~~------------~~~~~~~e~-----~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~ 230 (251)
T TIGR03534 168 ADIHLL------------DPEVRFHEP-----RLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE 230 (251)
T ss_pred hhhhhc------------ChhhhhcCC-----HHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence 000000 000000000 000000 011223478999999999999 4456788999999
Q ss_pred hCCCeEEEEEEcC
Q 036440 159 EVHFHHYKITPLF 171 (181)
Q Consensus 159 ~aGf~~~~i~~~~ 171 (181)
++||+.+++....
T Consensus 231 ~~gf~~v~~~~d~ 243 (251)
T TIGR03534 231 AAGFADVETRKDL 243 (251)
T ss_pred hCCCCceEEEeCC
Confidence 9999998887543
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.67 E-value=0.00027 Score=53.52 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=41.0
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------ccCCHHHHHHHHHhCCCeEEE
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA------------------------------KLSTEKELESLFVEVHFHHYK 166 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~eRt~~E~~~Ll~~aGf~~~~ 166 (181)
+...+||..+| ..++|+.+++.++|+| ...|.++|+.+++++||++++
T Consensus 83 ~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 83 ICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 77888888885 5678888888888888 567899999999999999875
No 35
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.64 E-value=0.00027 Score=63.14 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=72.4
Q ss_pred CeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCC----CcceEeccccchhh
Q 036440 29 GSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIP----PVCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P----~~d~~~~~~~~~~~ 86 (181)
.++|||| +.++.+.+.+|. |..++.+.. ..+|+++.+|+-+ +| ..|++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-l~~~~~~FD~V--------- 202 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-LADEGRKFDAV--------- 202 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-hhhccCCCCEE---------
Confidence 4899999 556778999998 455555431 2489999998743 33 25877
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
+...+||.+.|.+ ..|+.++..++|||
T Consensus 203 ------------------------------i~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~ 250 (322)
T PLN02396 203 ------------------------------LSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGA 250 (322)
T ss_pred ------------------------------EEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhH
Confidence 6666777776654 47777777777777
Q ss_pred ---------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ---------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ---------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
+-.|.+|+..+|+++||+++.+..
T Consensus 251 eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 251 EYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred HHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 246899999999999999988753
No 36
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.58 E-value=0.00091 Score=60.02 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCCeEEEec------------CCCC--ceEEEeech-hhhhhh-------ccCCCceEEecCCCCC------CCCcceEe
Q 036440 27 RLGSLVDVG------------AFPC--VKCTEFDQP-HVVANL-------LDTNNLKYLADDFFQS------IPPVCMIP 78 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~--l~~~~~DlP-~Vv~~a-------~~~~ri~~~~gDff~~------~P~~d~~~ 78 (181)
+.-+||||. .+|. .+..+-|.- .-|+.. .+.+-+++..+|.|+. .|..++.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~- 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA- 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE-
Confidence 556899998 7887 678888874 333332 2356669999999963 2444565
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHH-HHHHHHHHhccCC------------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVK-ILKICREAITSKA------------ 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~-iL~~~~~a~~~~g------------ 145 (181)
+++-+.--|+|.+.++ -|+.++.++.|+|
T Consensus 214 --------------------------------------iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 214 --------------------------------------IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred --------------------------------------EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 6777777799988665 6999999999999
Q ss_pred -------------------ccCCHHHHHHHHHhCCCeEEEEE-EcCCCCeEEEE
Q 036440 146 -------------------KLSTEKELESLFVEVHFHHYKIT-PLFGLPSLIEV 179 (181)
Q Consensus 146 -------------------~eRt~~E~~~Ll~~aGf~~~~i~-~~~~~~~viE~ 179 (181)
|-||.+|..+|.++|||+-.+.. .-.|..+|.-+
T Consensus 256 le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA 309 (311)
T PF12147_consen 256 LEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLA 309 (311)
T ss_pred hHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEee
Confidence 88999999999999999865433 34455555443
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.50 E-value=0.00063 Score=62.14 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc----cCCCceEEecCCCC---CCCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQ---SIPP-- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~---~~P~-- 73 (181)
..+++.. +...-.+++|+| +. .-+.+.+|. |..++.+. ..++++++.+|+.+ ++|.
T Consensus 27 ~~il~~l--~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 27 PEILSLL--PPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred hHHHhhc--CccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence 4455555 334456899999 21 236688886 44454332 24689999999963 2343
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------- 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------- 145 (181)
.|++ +...++|.++|++..++|++++..++|+|
T Consensus 104 fD~I---------------------------------------~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 104 VDLI---------------------------------------FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EEEE---------------------------------------ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 5888 78888999999999999999999999999
Q ss_pred --------------ccCCHHHHHHHHHhCCCeEE
Q 036440 146 --------------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 146 --------------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
..|+.++|.+++.++||...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 145 FHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 25678999999999998765
No 38
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.48 E-value=0.00084 Score=59.80 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcCCC---CeEEEEEC
Q 036440 148 STEKELESLFVEVHFHHYKITPLFGL---PSLIEVYP 181 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~~~---~~viE~~~ 181 (181)
.+.+|++++|+++||++....-.... -.+.|+.|
T Consensus 278 ~s~eel~~lL~~AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 278 HAEADVERALKKAGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred CCHHHHHHHHHHCCCEEEEEEEeecceeHHhhhhhcc
Confidence 37999999999999998765533332 25556544
No 39
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.45 E-value=0.0017 Score=56.13 Aligned_cols=102 Identities=14% Similarity=0.231 Sum_probs=79.9
Q ss_pred CeEEEec------------CCCCceEEEeech-hhhhhhcc------CCCceEEecCCCC-CCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQP-HVVANLLD------TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~ 86 (181)
.++|||| ..+..+++..|.- ..++.+.. ...|+++.+|..+ ++|. -|++
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~v--------- 123 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAV--------- 123 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEE---------
Confidence 6899999 7778899999984 56666642 1229999999987 5665 5888
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
.+..-||+.+|- .+.|+.+...++|||
T Consensus 124 ------------------------------t~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 124 ------------------------------TISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred ------------------------------EeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 777777777754 457888888888888
Q ss_pred -----------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 -----------------------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 -----------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
+..+.+++.+.++++||+.+.-.+..
T Consensus 172 ~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~ 226 (238)
T COG2226 172 YYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLT 226 (238)
T ss_pred HHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence 77889999999999999998855543
No 40
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.44 E-value=0.0027 Score=56.65 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=69.7
Q ss_pred CeEEEec------------CCCCceEEEeechh-hhhhh-------ccCCCceEEecCCCCCCC---CcceEeccccchh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQPH-VVANL-------LDTNNLKYLADDFFQSIP---PVCMIPLRLGYSH 85 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a-------~~~~ri~~~~gDff~~~P---~~d~~~~~~~~~~ 85 (181)
++|+||| ..++ +++.+|.-. .+..+ ....++.+..+|+-+ +| ..|++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-lp~~~~FD~V-------- 192 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-LHELYAFDTV-------- 192 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-CCCCCCcCEE--------
Confidence 7999999 3443 678899633 22221 124678888877532 33 35777
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
+...+||.+.|- ...|+.++.+++|||
T Consensus 193 -------------------------------~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~ 239 (314)
T TIGR00452 193 -------------------------------FSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK 239 (314)
T ss_pred -------------------------------EEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCch
Confidence 666667666554 458899999999999
Q ss_pred ----------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ----------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ----------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
-..|.++++.+|+++||+.+++...
T Consensus 240 ~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 240 DRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 1227889999999999999998754
No 41
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.32 E-value=0.0085 Score=50.25 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred cCCCeEEEec------------CCCCceEEEeech-hhhhhhc------cCCCceEEecCCCCCCC--CcceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL------DTNNLKYLADDFFQSIP--PVCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~------~~~ri~~~~gDff~~~P--~~d~~~~~~~~~ 84 (181)
....+++|+| .+|..+.+..|.- ..++.+. ...+++++.+|+++..+ ..|++..+--|.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 3456899999 6788999999984 4444433 24689999999998765 368774443321
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeee----------ccCChHHHHHHHHHHHHHhccCC------ccC
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII----------HVFGDEESVKILKICREAITSKA------KLS 148 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL----------Hdw~D~~~~~iL~~~~~a~~~~g------~eR 148 (181)
.....-. +...+. ..-.-+.-.++++++...++||| ...
T Consensus 187 ~~~~~~~-------------------------~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 187 PEADIHL-------------------------LQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD 241 (275)
T ss_pred Ccchhhh-------------------------CCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence 1000000 001110 01122334578999999999999 345
Q ss_pred CHHHHHHHHHhCCCeEEEEE-EcCCCCeEEEE
Q 036440 149 TEKELESLFVEVHFHHYKIT-PLFGLPSLIEV 179 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~~i~-~~~~~~~viE~ 179 (181)
..++++.++++.||..+++. ...|..-++-+
T Consensus 242 ~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~ 273 (275)
T PRK09328 242 QGEAVRALLAAAGFADVETRKDLAGRDRVVLG 273 (275)
T ss_pred HHHHHHHHHHhCCCceeEEecCCCCCceEEEE
Confidence 56789999999999987775 44555555433
No 42
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.31 E-value=0.0024 Score=58.37 Aligned_cols=127 Identities=12% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhcc---------CCCceEEecCCCCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLLD---------TNNLKYLADDFFQSIP 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~~---------~~ri~~~~gDff~~~P 72 (181)
..+++..+. ...++++|+| ++|..+.+.+|.. ..++.++. .+++++..+|.++.++
T Consensus 218 rllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 556677742 2236999999 8999999999996 45544431 1378999999998764
Q ss_pred C--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCccC--
Q 036440 73 P--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-- 148 (181)
Q Consensus 73 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~eR-- 148 (181)
. .|++..+--| +..|..+++...++++.++..++|||+.+
T Consensus 296 ~~~fDlIlsNPPf------------------------------------h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 296 PFRFNAVLCNPPF------------------------------------HQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCEEEEEECcCc------------------------------------ccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 3 6887222211 23345677888899999999999999211
Q ss_pred --CHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 149 --TEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 149 --t~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
..-+|...|++ .|..+++.--....-|+++.
T Consensus 340 ~nr~l~y~~~L~~-~fg~~~~va~~~kf~vl~a~ 372 (378)
T PRK15001 340 ANRHLDYFHKLKK-IFGNCTTIATNNKFVVLKAV 372 (378)
T ss_pred EecCcCHHHHHHH-HcCCceEEccCCCEEEEEEE
Confidence 22356666766 46666665555556666664
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.27 E-value=0.0052 Score=49.44 Aligned_cols=98 Identities=16% Similarity=0.282 Sum_probs=70.1
Q ss_pred CeEEEec------------CCCCceEEEeech-hhhhhhc--cCCCceEEecCCCCC-CCC--cceEeccccchhhhHHh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQP-HVVANLL--DTNNLKYLADDFFQS-IPP--VCMIPLRLGYSHIKIMI 90 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~--~~~ri~~~~gDff~~-~P~--~d~~~~~~~~~~~~~~~ 90 (181)
.+|||+| .+|..+.+..|.. ..+..+. ..++++++.+|+.+. .|. .|++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v------------- 102 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLI------------- 102 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEE-------------
Confidence 6899999 6788889999985 4444333 245899999998753 333 5888
Q ss_pred hhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------c
Q 036440 91 AFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------------K 146 (181)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------~ 146 (181)
+...++|...|. .++|++++..++|+| .
T Consensus 103 --------------------------i~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (240)
T TIGR02072 103 --------------------------VSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLR 154 (240)
T ss_pred --------------------------EEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccC
Confidence 666667655443 457888888888877 2
Q ss_pred cCCHHHHHHHHHhCCCeEEEEE
Q 036440 147 LSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 147 eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
-.+.+++.+++.++ |..+.+.
T Consensus 155 ~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 155 YLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred CCCHHHHHHHHHHh-cCCcEEE
Confidence 35778899999988 8766543
No 44
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.26 E-value=0.0012 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
.-.+.+|+.++|+++||+.++......
T Consensus 124 ~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 124 GYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred HCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 345889999999999999998876643
No 45
>PRK06922 hypothetical protein; Provisional
Probab=97.24 E-value=0.0013 Score=64.41 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=64.7
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeechhh-hhhhcc-----CCCceEEecCCCCC---CCC--cceEecc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQPHV-VANLLD-----TNNLKYLADDFFQS---IPP--VCMIPLR 80 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~DlP~V-v~~a~~-----~~ri~~~~gDff~~---~P~--~d~~~~~ 80 (181)
++..-.+++|+| ++|+.+.+.+|+... ++.+.. ..++.++.+|..+- +|. .|++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvV--- 491 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTI--- 491 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEE---
Confidence 566678999999 689999999999764 555432 34678888998651 332 6888
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC-----------ChHHHHHHHHHHHHHhccCC
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF-----------GDEESVKILKICREAITSKA 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw-----------~D~~~~~iL~~~~~a~~~~g 145 (181)
+.+.++|+| ++++..++|++++.+++|||
T Consensus 492 ------------------------------------Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGG 531 (677)
T PRK06922 492 ------------------------------------VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGG 531 (677)
T ss_pred ------------------------------------EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCc
Confidence 777788865 56788999999999999999
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.16 E-value=0.0057 Score=52.79 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=82.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC-cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-~d~ 76 (181)
+.+++.. .....+++||+| +-.+.+.+.+|. |..++.+.. .-++++...|+.+. ++. .|+
T Consensus 110 ~~~~~~~--~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~ 187 (287)
T PRK12335 110 SEVLEAV--QTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDF 187 (287)
T ss_pred HHHHHHh--hccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccE
Confidence 3455555 233456999999 335678999999 455554421 23688888887653 333 688
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++|..++++...+|+++.+.++|||
T Consensus 188 I---------------------------------------~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~ 228 (287)
T PRK12335 188 I---------------------------------------LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTE 228 (287)
T ss_pred E---------------------------------------EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 7 77888998888899999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+|+++++.. |++++....
T Consensus 229 ~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~ 260 (287)
T PRK12335 229 DYPCPMPFSFTFKEGELKDYYQD--WEIVKYNEN 260 (287)
T ss_pred cCCCCCCCCcccCHHHHHHHhCC--CEEEEEecc
Confidence 23678899999865 988877533
No 47
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.16 E-value=0.0069 Score=49.47 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=79.7
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC-CCCC-cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ-SIPP-VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~-~~P~-~d~ 76 (181)
..+++.. ......+++|+| +-.+.+.+.+|+ |..++.+.. .-+++....|... +++. .|.
T Consensus 20 ~~l~~~~--~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 20 SAVREAV--KTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHHh--ccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 5666766 344457999999 224568899999 455554321 1136677777643 2332 687
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++|.++++....++++++++++|||
T Consensus 98 I---------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~ 138 (195)
T TIGR00477 98 I---------------------------------------FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTA 138 (195)
T ss_pred E---------------------------------------EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccC
Confidence 7 77888999998899999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+.+|+++++. +|++....
T Consensus 139 ~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 139 DYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 1367889999886 58887766
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.06 E-value=0.0079 Score=49.06 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=74.3
Q ss_pred CCeEEEec------------CCCCceEEEeechh-hhhhhc------cCCCceEEecCCCCCC--CCcceEeccccchhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQPH-VVANLL------DTNNLKYLADDFFQSI--PPVCMIPLRLGYSHI 86 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a~------~~~ri~~~~gDff~~~--P~~d~~~~~~~~~~~ 86 (181)
-.+++|+| .+|..+.+.+|.-. .++.+. ..++++++.+|+.+-. ...|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I--------- 113 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVI--------- 113 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEE---------
Confidence 47999999 57888999999854 333322 1347999999987621 236777
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHHh-
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFVE- 159 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~- 159 (181)
+... +|+. ..+++.+...++||| ......++..+.+.
T Consensus 114 ------------------------------~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 114 ------------------------------TSRA-LASL-----NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC 157 (181)
T ss_pred ------------------------------Eehh-hhCH-----HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh
Confidence 3332 4433 247888899999999 77788888888887
Q ss_pred --CCCeEEEEEEcCCCC
Q 036440 160 --VHFHHYKITPLFGLP 174 (181)
Q Consensus 160 --aGf~~~~i~~~~~~~ 174 (181)
.||..+++.+..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (181)
T TIGR00138 158 QVLGVEPLEVPPLTGPD 174 (181)
T ss_pred hhcCceEeeccccCCCc
Confidence 799999998887753
No 49
>PRK14968 putative methyltransferase; Provisional
Probab=97.05 E-value=0.039 Score=43.15 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=75.2
Q ss_pred cCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCC-ceEEecCCCCCCCC--cceEeccccc
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNN-LKYLADDFFQSIPP--VCMIPLRLGY 83 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~r-i~~~~gDff~~~P~--~d~~~~~~~~ 83 (181)
.+-.+++|+| +. ..+.+.+|. |.+++.+.. .++ +.++.+|+++.++. .|++..+..|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 4557899999 33 567899998 566665521 233 89999999987665 5777444332
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC--hHHHHHHHHHHHHHhccCC-------ccCCHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG--DEESVKILKICREAITSKA-------KLSTEKELE 154 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~--D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~ 154 (181)
.... +...+-. .....+|... ......+++.+...|+|+| -....+++.
T Consensus 101 ~~~~----------------~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~ 158 (188)
T PRK14968 101 LPTE----------------EEEEWDD------WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVL 158 (188)
T ss_pred CCCC----------------chhhhhh------hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHH
Confidence 1000 0000000 0011222222 2334578999999999999 233568899
Q ss_pred HHHHhCCCeEEEEEEc
Q 036440 155 SLFVEVHFHHYKITPL 170 (181)
Q Consensus 155 ~Ll~~aGf~~~~i~~~ 170 (181)
.++.++||+...+...
T Consensus 159 ~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 159 EYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHCCCeeeeeeec
Confidence 9999999998877643
No 50
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.01 E-value=0.011 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.5
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..+.++|..+++++||..+.+.
T Consensus 182 ~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 182 KFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hcCCHHHHHHHHHHCCCeEeeee
Confidence 34578899999999999998775
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.96 E-value=0.00055 Score=48.98 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=42.2
Q ss_pred CCCCceEEEeec-hhhhhhhcc---------CCCceEEecCCCCCCC--CcceEeccccchhhhHHhhhhhhhhcCCCcc
Q 036440 36 AFPCVKCTEFDQ-PHVVANLLD---------TNNLKYLADDFFQSIP--PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRL 103 (181)
Q Consensus 36 ~~P~l~~~~~Dl-P~Vv~~a~~---------~~ri~~~~gDff~~~P--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (181)
++|..+.+..|. |..++.++. ..++++...|.++..+ ..|++
T Consensus 17 ~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V-------------------------- 70 (99)
T PF08242_consen 17 ELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLV-------------------------- 70 (99)
T ss_dssp HC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEE--------------------------
T ss_pred hCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccccccccee--------------------------
Confidence 679999999998 566655542 1255666666665544 47888
Q ss_pred chhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc
Q 036440 104 HIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK 146 (181)
Q Consensus 104 ~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~ 146 (181)
++..+||.+ ++-..+|++++..++|||+
T Consensus 71 -------------~~~~vl~~l--~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 71 -------------VASNVLHHL--EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp -------------EEE-TTS----S-HHHHHHHHTTT-TSS-E
T ss_pred -------------hhhhhHhhh--hhHHHHHHHHHHHcCCCCC
Confidence 899999999 4455899999999999984
No 52
>PRK04266 fibrillarin; Provisional
Probab=96.93 E-value=0.028 Score=47.72 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=73.9
Q ss_pred HHHHHHhh-hhhcCCCeEEEec------------CCCCceEEEeec-hhhhh----hhccCCCceEEecCCCCCCCCcce
Q 036440 15 SLALKYCK-QIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVA----NLLDTNNLKYLADDFFQSIPPVCM 76 (181)
Q Consensus 15 ~~~l~~~~-~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~----~a~~~~ri~~~~gDff~~~P~~d~ 76 (181)
..++..++ =+.+.-.+|+|+| ..+.-+.+.+|. |+.++ .+...+++.++.+|..++.+..+.
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l 138 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV 138 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc
Confidence 44555331 0455667999999 445457788898 54333 333346789998997642100000
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-HHHHHHHHHHHHhccCCc---------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-ESVKILKICREAITSKAK--------- 146 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-~~~~iL~~~~~a~~~~g~--------- 146 (181)
. . -+..|+|+..+. ....+|++++..++|||+
T Consensus 139 ~-~-------------------------------------~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~ 180 (226)
T PRK04266 139 V-E-------------------------------------KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS 180 (226)
T ss_pred c-c-------------------------------------cCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 0 0 113344665543 334568999999999992
Q ss_pred -------cCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 147 -------LSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 147 -------eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
.|..++...+++++||+.++...+..
T Consensus 181 ~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 181 IDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred ccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 23334567999999999998876643
No 53
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.88 E-value=0.0055 Score=52.76 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=56.2
Q ss_pred CceEEEeec-hhhhhhhcc---------------------------------CCCceEEecCCCCCCC-C--cceEeccc
Q 036440 39 CVKCTEFDQ-PHVVANLLD---------------------------------TNNLKYLADDFFQSIP-P--VCMIPLRL 81 (181)
Q Consensus 39 ~l~~~~~Dl-P~Vv~~a~~---------------------------------~~ri~~~~gDff~~~P-~--~d~~~~~~ 81 (181)
..+.+..|+ |..++.|.. .++|++..+|+.+..| . .|++
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I---- 207 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLI---- 207 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEE----
Confidence 578899998 556665542 1478999999997543 2 5888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+.+++||.|+++...++|++++.+++|||
T Consensus 208 -----------------------------------~crnvl~yf~~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 208 -----------------------------------FCRNVLIYFDEPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred -----------------------------------EechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence 88999999999999999999999999999
No 54
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.87 E-value=0.0092 Score=53.14 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=28.2
Q ss_pred ceEEEeec-hhhhhhhcc---------CCCceEEecCCCC-CCCC--cceE
Q 036440 40 VKCTEFDQ-PHVVANLLD---------TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 40 l~~~~~Dl-P~Vv~~a~~---------~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
-+.++.|+ |+.++.+.. ..|+.++.+|.=+ ++|. .|.|
T Consensus 131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y 181 (296)
T KOG1540|consen 131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY 181 (296)
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence 57899998 676665531 4569999999875 5665 6888
No 55
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.86 E-value=0.013 Score=51.15 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=63.3
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeechh-hhh-------hhccCCCceEEecCCCCCCCCcceEecccc-
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQPH-VVA-------NLLDTNNLKYLADDFFQSIPPVCMIPLRLG- 82 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~-------~a~~~~ri~~~~gDff~~~P~~d~~~~~~~- 82 (181)
+.+.-.+||||| +| +++++.+.+-. -.+ .+.+.+++++.-.|+.+--+.-|.+ .+.+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~I-vSi~~ 136 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRI-VSIEM 136 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEE-EEESE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEE-EEEec
Confidence 456667999999 66 78888888743 222 2235789999999987633346665 0000
Q ss_pred chhh--hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHH--HHHHHHHhccCCccCCHHHHHHHHH
Q 036440 83 YSHI--KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKI--LKICREAITSKAKLSTEKELESLFV 158 (181)
Q Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~i--L~~~~~a~~~~g~eRt~~E~~~Ll~ 158 (181)
+-|+ +-.-+||-++ ..|++-+ +.+++..|.+.-.....-.- ..-+..-+=|||...|.+++...++
T Consensus 137 ~Ehvg~~~~~~~f~~~---------~~~Lkpg-G~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~ 206 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKI---------SRLLKPG-GRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAE 206 (273)
T ss_dssp GGGTCGGGHHHHHHHH---------HHHSETT-EEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHH
T ss_pred hhhcChhHHHHHHHHH---------HHhcCCC-cEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHh
Confidence 0011 1111222211 1111111 13344444443222221000 0223455557778899999999999
Q ss_pred hCCCeEEEEEEc
Q 036440 159 EVHFHHYKITPL 170 (181)
Q Consensus 159 ~aGf~~~~i~~~ 170 (181)
++||.+..+...
T Consensus 207 ~~~l~v~~~~~~ 218 (273)
T PF02353_consen 207 DAGLEVEDVENL 218 (273)
T ss_dssp HTT-EEEEEEE-
T ss_pred cCCEEEEEEEEc
Confidence 999999887754
No 56
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.85 E-value=0.014 Score=50.35 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=72.1
Q ss_pred CeEEEec---------CCCCceEEEeechhhhhhhccCCCceEEecCCCC-CCCC-----cceEeccccchhhhHHhhhh
Q 036440 29 GSLVDVG---------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFFQ-SIPP-----VCMIPLRLGYSHIKIMIAFF 93 (181)
Q Consensus 29 ~~lvDvG---------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff~-~~P~-----~d~~~~~~~~~~~~~~~~~~ 93 (181)
-++|||| .++.+..+-+||-+ ..=.+...||++ ++|. .|++
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvI---------------- 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVI---------------- 108 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEE----------------
Confidence 3899999 34445556666543 222456789997 5885 3666
Q ss_pred hhhhcCCCccchhhhhhcccccceeeeeeccCChH-HHHHHHHHHHHHhccCC-------------------ccCCHHHH
Q 036440 94 IRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-ESVKILKICREAITSKA-------------------KLSTEKEL 153 (181)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-~~~~iL~~~~~a~~~~g-------------------~eRt~~E~ 153 (181)
.++-||.--++. +.-+.|+++++-+.++| |--|.+.|
T Consensus 109 -----------------------s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l 165 (219)
T PF11968_consen 109 -----------------------SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERL 165 (219)
T ss_pred -----------------------EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHH
Confidence 788888777754 45599999999999998 67788999
Q ss_pred HHHHHhCCCeEEEEEEcC
Q 036440 154 ESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 154 ~~Ll~~aGf~~~~i~~~~ 171 (181)
+.+++.-||..++-....
T Consensus 166 ~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 166 REIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHhCCcEEEEEEecC
Confidence 999999999998876554
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.82 E-value=0.014 Score=47.20 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.6
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..|.+++.++++++||+++...-.
T Consensus 144 ~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 144 HFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred ccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 5679999999999999999877644
No 58
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.77 E-value=0.023 Score=47.43 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceE
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
..+++..+ -....+|+|+| +-++.+.+.+|+ |..++.+.. ...+.++.+|+-+ ++|. .|++
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44555552 23467899999 334567899999 777776654 2346788888854 2333 4777
No 59
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.68 E-value=0.006 Score=41.83 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=52.8
Q ss_pred CCCCceEEEeechh-hhhhhcc---CCCceEEecCCCC-CCCC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhh
Q 036440 36 AFPCVKCTEFDQPH-VVANLLD---TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108 (181)
Q Consensus 36 ~~P~l~~~~~DlP~-Vv~~a~~---~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
++|..+.+.+|.-. .++.+.. ..++.+..+|+.+ ++|. .|++
T Consensus 16 ~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v------------------------------- 64 (95)
T PF08241_consen 16 KRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVV------------------------------- 64 (95)
T ss_dssp HTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEE-------------------------------
T ss_pred hccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccc-------------------------------
Confidence 45888899999854 4555442 5667799999876 3443 5888
Q ss_pred hhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc
Q 036440 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK 146 (181)
Q Consensus 109 ~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~ 146 (181)
+...++|.+ ++..++++.+...++|+|+
T Consensus 65 --------~~~~~~~~~--~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 65 --------FSNSVLHHL--EDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp --------EEESHGGGS--SHHHHHHHHHHHHEEEEEE
T ss_pred --------ccccceeec--cCHHHHHHHHHHHcCcCeE
Confidence 888899888 7778899999999999984
No 60
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.67 E-value=0.053 Score=45.47 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=76.1
Q ss_pred CCCeEEEec----------CCCCceEEEeechh-hhhhhc------------------cCCCceEEecCCCCCCC----C
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQPH-VVANLL------------------DTNNLKYLADDFFQSIP----P 73 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~DlP~-Vv~~a~------------------~~~ri~~~~gDff~~~P----~ 73 (181)
.-++++|+| +--+...+.+|+-+ .++.+. ...+|++..+|+|+-.+ .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 447999999 44577899999854 444321 13579999999997432 2
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------- 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------- 145 (181)
-|.+ +-+.++|..+.+...+.++++.++++|||
T Consensus 114 fD~i---------------------------------------~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 114 VDAV---------------------------------------YDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cCEE---------------------------------------EechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 4776 56666778899999999999999999999
Q ss_pred ----------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ----------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ----------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...|.+|++++|.. +|.+..+.
T Consensus 155 ~~~~~~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 155 YDQSEMAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred cCCCCCCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 35788999999964 56655544
No 61
>PRK03612 spermidine synthase; Provisional
Probab=96.64 E-value=0.006 Score=57.51 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=67.5
Q ss_pred cCCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhcc-------------CCCceEEecCCCCC---CCC-cc
Q 036440 26 ERLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLLD-------------TNNLKYLADDFFQS---IPP-VC 75 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~~-------------~~ri~~~~gDff~~---~P~-~d 75 (181)
.+.++|+|+| ++|. .+.+.+|+ |.+++.++. .+|++++.+|.++- .+. .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3567999999 8887 68999999 788887653 36888888887752 222 46
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH--------HHHHHHHHHHHhccCC--
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE--------SVKILKICREAITSKA-- 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~--------~~~iL~~~~~a~~~~g-- 145 (181)
++ ++|++|.. ..+.++.+++.++|+|
T Consensus 376 vI--------------------------------------------i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~l 411 (521)
T PRK03612 376 VI--------------------------------------------IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLL 411 (521)
T ss_pred EE--------------------------------------------EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEE
Confidence 66 22333321 2468899999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCC
Q 036440 146 ---------KLSTEKELESLFVEVHF 162 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf 162 (181)
..+...++.+.++++||
T Consensus 412 v~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 412 VVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEecCCcccchHHHHHHHHHHHHcCC
Confidence 34445678889999999
No 62
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.60 E-value=0.029 Score=47.75 Aligned_cols=59 Identities=5% Similarity=-0.059 Sum_probs=54.0
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC---------------------------------ccCCHHHHHHHHHhCCCe
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA---------------------------------KLSTEKELESLFVEVHFH 163 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------------------------~eRt~~E~~~Ll~~aGf~ 163 (181)
+.-+++|--+-+.+..+++.....++++| -.|..+++..+.+++||+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 78899999999999999999999999999 678899999999999999
Q ss_pred EEEEEEcCCCCe
Q 036440 164 HYKITPLFGLPS 175 (181)
Q Consensus 164 ~~~i~~~~~~~~ 175 (181)
..+++.+|..--
T Consensus 187 l~~~~~MPANN~ 198 (204)
T PF06080_consen 187 LEEDIDMPANNL 198 (204)
T ss_pred cCcccccCCCCe
Confidence 999999986543
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.58 E-value=0.038 Score=49.67 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=77.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhcc-----CCCceEEecCCCCCCCC-cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLLD-----TNNLKYLADDFFQSIPP-VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~~-----~~ri~~~~gDff~~~P~-~d 75 (181)
..+++.++ -...++++|+| .+|+.+.+..|.- ..++.+.. .-..+++..|.++.++. .|
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fD 263 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFD 263 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCcc
Confidence 44556563 22235899999 7899999999985 45544431 12356788898876554 68
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC---ChHHHHHHHHHHHHHhccCCcc----C
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF---GDEESVKILKICREAITSKAKL----S 148 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw---~D~~~~~iL~~~~~a~~~~g~e----R 148 (181)
.+ +..--+|+. +.+...++++.+...++|||+. -
T Consensus 264 lI---------------------------------------vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 264 MI---------------------------------------ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EE---------------------------------------EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 87 555556653 4556789999999999999922 1
Q ss_pred CHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 149 TEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
+.--|..++++. |..+++.--.+...|.++.
T Consensus 305 ~~l~y~~~l~~~-Fg~~~~la~~~~f~v~~a~ 335 (342)
T PRK09489 305 AFLPYPDLLDET-FGSHEVLAQTGRFKVYRAI 335 (342)
T ss_pred CCCChHHHHHHH-cCCeEEEEeCCCEEEEEEE
Confidence 112344555543 5555554444444555543
No 64
>PRK04457 spermidine synthase; Provisional
Probab=96.50 E-value=0.029 Score=48.37 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=41.7
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC---CCCC-cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ---SIPP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~---~~P~-~d~~ 77 (181)
+..++++|+| .+|+.+.+++|+ |.+++.+.. .+|++++.+|..+ ..|. .|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 3567899999 789999999999 999987652 4799999999864 3443 6888
No 65
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.50 E-value=0.035 Score=49.00 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=76.0
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
.+++|+| .+|+.+.+.+|+ |..++.+.. .+||+++.+|+++.+|. .|++..+-=|...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 5899999 689999999999 777765532 46899999999987764 5877333211000
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc---------CChHHHHHHHHHHHHHhccCC-----ccCCHHH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV---------FGDEESVKILKICREAITSKA-----KLSTEKE 152 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd---------w~D~~~~~iL~~~~~a~~~~g-----~eRt~~E 152 (181)
.-+-. +...+.|. -+-+-..+|++.+...++||| --.+.++
T Consensus 215 ~~~~~-------------------------l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~ 269 (307)
T PRK11805 215 EDMAD-------------------------LPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVH 269 (307)
T ss_pred cchhh-------------------------cCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHHH
Confidence 00000 00111110 012334689999999999999 2224667
Q ss_pred HHHHHHhCCCeEEEEEEc
Q 036440 153 LESLFVEVHFHHYKITPL 170 (181)
Q Consensus 153 ~~~Ll~~aGf~~~~i~~~ 170 (181)
..+++.+.||....+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~ 287 (307)
T PRK11805 270 LEEAYPDVPFTWLEFENG 287 (307)
T ss_pred HHHHHhhCCCEEEEecCC
Confidence 999999999877666554
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.47 E-value=0.0083 Score=43.29 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCC----CcceEeccccchhhhHHhhhhhhhhcCCCccchhh
Q 036440 38 PCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIP----PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFS 107 (181)
Q Consensus 38 P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (181)
|..+.+.+|+ |..++.+.. ..+++++..|+-+ +| ..|++
T Consensus 23 ~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v------------------------------ 71 (101)
T PF13649_consen 23 PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLV------------------------------ 71 (101)
T ss_dssp --SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEE------------------------------
T ss_pred ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEE------------------------------
Confidence 6689999997 556665542 3589999999965 33 35777
Q ss_pred hhhccccccee-eeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 108 WLNFMKRVINM-QIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 108 ~~~~~~~~~~l-~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+. ...+|.+++++..++|+++.+.++|||
T Consensus 72 ---------~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 ---------VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---------EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ---------EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 55 344788999999999999999999986
No 67
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.43 E-value=0.011 Score=51.60 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=102.9
Q ss_pred hHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-cCCCceEEecCCCCCCCC--cceE
Q 036440 14 ASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-DTNNLKYLADDFFQSIPP--VCMI 77 (181)
Q Consensus 14 ~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-~~~ri~~~~gDff~~~P~--~d~~ 77 (181)
|..++... .......++|+| +||....+.+|- |..++.|. .-+++++..+|.-+-.|. .|++
T Consensus 19 a~dLla~V--p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARV--PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhC--CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 46777887 588889999999 999999999996 67777775 478999999999876664 5665
Q ss_pred eccccch----hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH------hccCC--
Q 036440 78 PLRLGYS----HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA------ITSKA-- 145 (181)
Q Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a------~~~~g-- 145 (181)
-.+.-+- |..+---+...+.+|+ .|..-+=|+-|+-.-.+++...+. +...|
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg----------------~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~ 160 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGG----------------VLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLT 160 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCc----------------eEEEECCCccCchhHHHHHHHHhcCchhhhhCccccc
Confidence 2222221 3333333355567777 777777788888888887777642 22212
Q ss_pred --ccCCHHHHHHHHHhCCCeE-----EEEEEcCCCCeEEEEE
Q 036440 146 --KLSTEKELESLFVEVHFHH-----YKITPLFGLPSLIEVY 180 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~aGf~~-----~~i~~~~~~~~viE~~ 180 (181)
..-|...|-++|...+=++ +--++++|...+||-.
T Consensus 161 r~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 161 RAPLPSPAAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred cCCCCCHHHHHHHhCcccceeeeeeeeccccCCCccchhhhe
Confidence 5567889999998887543 1123667777888754
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.37 E-value=0.029 Score=45.54 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhCCCeEEEEE
Q 036440 148 STEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~ 168 (181)
.|.+++.++++++||.++.+.
T Consensus 182 ~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 182 IKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCHHHHHHHHHHcCCeeeeee
Confidence 477899999999999998775
No 69
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.35 E-value=0.029 Score=46.60 Aligned_cols=78 Identities=8% Similarity=0.158 Sum_probs=62.4
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC--cceEeccccchhhhHH
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKIM 89 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~~ 89 (181)
....+|+|+| .+|..+.+.+|+ |..++.+.. .+++++..+|++++.|. .|++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V------------ 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLV------------ 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEE------------
Confidence 4557899999 458899999997 567777754 46788999999886554 5888
Q ss_pred hhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhc
Q 036440 90 IAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAIT 142 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~ 142 (181)
+...+||.+++++..+.++++.....
T Consensus 110 ---------------------------~~~~vL~hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 110 ---------------------------LTKGVLIHINPDNLPTAYRELYRCSN 135 (204)
T ss_pred ---------------------------EECChhhhCCHHHHHHHHHHHHhhcC
Confidence 88888888888888899999988763
No 70
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.31 E-value=0.11 Score=44.84 Aligned_cols=125 Identities=13% Similarity=0.216 Sum_probs=79.3
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
.+++|+| .+|+.+++.+|. |..++.+. ..+|++++.+|+++.+|. .|++..+-=|--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 5899999 679999999998 55665443 245799999999988764 5777333221000
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC----------hHHHHHHHHHHHHHhccCC------ccCCH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG----------DEESVKILKICREAITSKA------KLSTE 150 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~----------D~~~~~iL~~~~~a~~~~g------~eRt~ 150 (181)
.-+. .+..+++.-+ -+.-.+|++.+...++||| -..-.
T Consensus 196 ~~~~--------------------------~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 196 EDLA--------------------------DLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred chhh--------------------------cCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 0000 1122222111 1245688999999999999 33445
Q ss_pred HHHHHHHH-hCCCeEEEEEE-cCCCCeEEEE
Q 036440 151 KELESLFV-EVHFHHYKITP-LFGLPSLIEV 179 (181)
Q Consensus 151 ~E~~~Ll~-~aGf~~~~i~~-~~~~~~viE~ 179 (181)
++..+++. +.||..+++.. ..|..-++-+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 250 KSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred HHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 67888888 57998877764 4555544433
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.25 E-value=0.043 Score=44.63 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=68.8
Q ss_pred hhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCC----CcceEe
Q 036440 24 IFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIP----PVCMIP 78 (181)
Q Consensus 24 d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P----~~d~~~ 78 (181)
+...-..++|+| ..|..+.+.+|. |..++.+. ..++++++.+|+.+.+| ..|.+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V- 115 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI- 115 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE-
Confidence 455567999999 246678999998 66666442 14688999999865322 25666
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc-------cCCHH
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------LSTEK 151 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~-------eRt~~ 151 (181)
++. .+.++...+|+.+...++|+|+ .-+.+
T Consensus 116 --------------------------------------~~~-----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 152 (198)
T PRK00377 116 --------------------------------------FIG-----GGSEKLKEIISASWEIIKKGGRIVIDAILLETVN 152 (198)
T ss_pred --------------------------------------EEC-----CCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHH
Confidence 321 2334556789999999999993 33447
Q ss_pred HHHHHHHhCCCeEEEEE
Q 036440 152 ELESLFVEVHFHHYKIT 168 (181)
Q Consensus 152 E~~~Ll~~aGf~~~~i~ 168 (181)
+...+|++.||. +++.
T Consensus 153 ~~~~~l~~~g~~-~~~~ 168 (198)
T PRK00377 153 NALSALENIGFN-LEIT 168 (198)
T ss_pred HHHHHHHHcCCC-eEEE
Confidence 788888999994 4443
No 72
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.22 E-value=0.072 Score=50.23 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=81.1
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
.+++|+| .+|+.+.+.+|. |..++.+. ..++++++.+|+++.++. .|++..+-=|...
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~ 219 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISH 219 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCc
Confidence 5899999 679999999998 56666553 246899999999987754 5777333221100
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeee-c-------cCCh--HHHHHHHHHHHHHhccCC------ccCCH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII-H-------VFGD--EESVKILKICREAITSKA------KLSTE 150 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL-H-------dw~D--~~~~~iL~~~~~a~~~~g------~eRt~ 150 (181)
.-.- -+...++ | .-.| +--.+|++.+...++|+| -....
T Consensus 220 ~~~~-------------------------~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~ 274 (506)
T PRK01544 220 SEKS-------------------------EMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE 274 (506)
T ss_pred hhhh-------------------------hcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH
Confidence 0000 0011111 0 1111 123468888899999999 44567
Q ss_pred HHHHHHHHhCCCeEEEEEE-cCCCCeEEEE
Q 036440 151 KELESLFVEVHFHHYKITP-LFGLPSLIEV 179 (181)
Q Consensus 151 ~E~~~Ll~~aGf~~~~i~~-~~~~~~viE~ 179 (181)
++...++.+.||..+++.. ..|..-++-+
T Consensus 275 ~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 275 EAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred HHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 7889999999999887765 5565555543
No 73
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.20 E-value=0.0095 Score=52.56 Aligned_cols=106 Identities=19% Similarity=0.385 Sum_probs=62.0
Q ss_pred CCCeEEEec---------------CCCCceEEEeec-hhhhhhhc----cCCC--ceEEecCCCCC---C--CCc-ceEe
Q 036440 27 RLGSLVDVG---------------AFPCVKCTEFDQ-PHVVANLL----DTNN--LKYLADDFFQS---I--PPV-CMIP 78 (181)
Q Consensus 27 ~~~~lvDvG---------------~~P~l~~~~~Dl-P~Vv~~a~----~~~r--i~~~~gDff~~---~--P~~-d~~~ 78 (181)
+++..||+| ..|+.+.+=.|. |-|++.+. .+++ ..++.+|+.++ + |.. ..+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l- 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL- 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC-
Confidence 778999999 689999999998 55555443 2444 89999999974 1 111 111
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-HHHHHHHHHHHHHhccCC------------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-EESVKILKICREAITSKA------------ 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-~~~~~iL~~~~~a~~~~g------------ 145 (181)
++ ..+. .++|--|||-.+| ++...|++..+.+++||+
T Consensus 147 -D~-------------~rPV----------------avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 147 -DF-------------DRPV----------------AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp --T-------------TS------------------EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred -CC-------------CCCe----------------eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 10 0111 2377888888877 677789999999999988
Q ss_pred ------------------ccCCHHHHHHHHHhCCCeEE
Q 036440 146 ------------------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 146 ------------------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
..||.+|..++|. ||.++
T Consensus 197 p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 197 PERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-
T ss_pred HHHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccC
Confidence 7889999999987 77765
No 74
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.20 E-value=0.047 Score=48.39 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=80.8
Q ss_pred CCCeEEEec----------CCCC-ceEEEeechhhhhhhc---------cCCCceEEecCCC-CCCCCcceEeccccchh
Q 036440 27 RLGSLVDVG----------AFPC-VKCTEFDQPHVVANLL---------DTNNLKYLADDFF-QSIPPVCMIPLRLGYSH 85 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~-l~~~~~DlP~Vv~~a~---------~~~ri~~~~gDff-~~~P~~d~~~~~~~~~~ 85 (181)
..+.||=+| ..|. ++.-.+|+|+|++.-. ...+.++++.|++ +++|.+-. ..||
T Consensus 92 g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~---~~G~-- 166 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALA---AAGF-- 166 (297)
T ss_pred cccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHH---hcCC--
Confidence 368899998 5553 7788899999998432 2449999999999 55665210 0111
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
.+.-+..+++..+|-.++.++..++|.++....++|.
T Consensus 167 -----------------------d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~ 223 (297)
T COG3315 167 -----------------------DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPA 223 (297)
T ss_pred -----------------------CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchh
Confidence 0112234477888888899999999999988888777
Q ss_pred -----------------ccCCHHHHHHHHHhCCCeEEEE
Q 036440 146 -----------------KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 146 -----------------~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
-.....|++.++.+.||..+..
T Consensus 224 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 224 ARKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhhhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 2245789999999999987665
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.19 E-value=0.048 Score=39.46 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=57.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCC---C-
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSI---P- 72 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~---P- 72 (181)
.+++.+ +...-.+++|+| ++|+.+.+.+|. |..++.+.. .++++++.+|..+.. +
T Consensus 10 ~~~~~~--~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 10 LTLSKL--RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 455555 455567999999 678889999998 455544321 357888888865322 2
Q ss_pred CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc
Q 036440 73 PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK 146 (181)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~ 146 (181)
..|.+ ++. ...+...++++.+.+.++|+|.
T Consensus 88 ~~D~v---------------------------------------~~~-----~~~~~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 88 EPDRV---------------------------------------FIG-----GSGGLLQEILEAIWRRLRPGGR 117 (124)
T ss_pred CCCEE---------------------------------------EEC-----CcchhHHHHHHHHHHHcCCCCE
Confidence 25666 332 2333445899999999999984
No 76
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.17 E-value=0.19 Score=47.10 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-- 73 (181)
..+++..-..++.-.+++|+| .+|..+.+.+|. |..++.+.. ..+++++.+|+++. .|.
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~ 318 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEG 318 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCC
Confidence 344443321233446899999 589999999999 777765542 45899999999875 332
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh--HHHHHHHHHHHHHhccCC-----
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD--EESVKILKICREAITSKA----- 145 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D--~~~~~iL~~~~~a~~~~g----- 145 (181)
.|++..+-=|....- .. -.....+|-.. .-|-...| +--.+|++.....++|+|
T Consensus 319 ~FDLIVSNPPYI~~~e-~~------------l~~~~v~~EP~-----~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 319 KWDIIVSNPPYIENGD-KH------------LLQGDLRFEPQ-----IALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CccEEEECCCCCCcch-hh------------hcchhhhcCHH-----HHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 477733332210000 00 00000000000 00101111 223478888888999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEEE-cCCCCeEEEE
Q 036440 146 -KLSTEKELESLFVEVHFHHYKITP-LFGLPSLIEV 179 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~~-~~~~~~viE~ 179 (181)
...-.++.++++++.||..+++.+ ..|.+-++-+
T Consensus 381 iG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 381 HGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 344467899999999999888765 4565655543
No 77
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.14 E-value=0.078 Score=44.64 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=81.0
Q ss_pred HHHHHHhhh-hhcCCCeEEEec----------CCCCceEEEeechhh-hhhhc------------------cCCCceEEe
Q 036440 15 SLALKYCKQ-IFERLGSLVDVG----------AFPCVKCTEFDQPHV-VANLL------------------DTNNLKYLA 64 (181)
Q Consensus 15 ~~~l~~~~~-d~~~~~~lvDvG----------~~P~l~~~~~DlP~V-v~~a~------------------~~~ri~~~~ 64 (181)
+.+.+.+.. .+..-.+++|+| +--+.+.+.+|+-.+ ++.+. ...+|++..
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence 444554421 122346999999 445778999998654 33221 146899999
Q ss_pred cCCCCCCC----CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 65 DDFFQSIP----PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 65 gDff~~~P----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
+|+|+..| ..|.+ +=+.++|-.+.+...+.++++.++
T Consensus 104 ~D~~~l~~~~~~~fd~v---------------------------------------~D~~~~~~l~~~~R~~~~~~l~~l 144 (218)
T PRK13255 104 GDFFALTAADLADVDAV---------------------------------------YDRAALIALPEEMRERYVQQLAAL 144 (218)
T ss_pred CcccCCCcccCCCeeEE---------------------------------------EehHhHhhCCHHHHHHHHHHHHHH
Confidence 99997533 23666 666777888999999999999999
Q ss_pred hccCC------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 141 ITSKA------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 141 ~~~~g------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
++||| ...|.+|+++++.. +|.+..+.
T Consensus 145 L~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 145 LPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred cCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 99997 35789999999963 36665554
No 78
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.13 E-value=0.081 Score=46.04 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC--cceEeccccch
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~--~d~~~~~~~~~ 84 (181)
...+++|+| .+|..+.+.+|. |..++.+.. .++|+++.+|+++.+|. .|++..+-=|.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 346899999 689999999999 566665532 46899999999987764 58773332110
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC----------ChHHHHHHHHHHHHHhccCC-----ccCC
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF----------GDEESVKILKICREAITSKA-----KLST 149 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw----------~D~~~~~iL~~~~~a~~~~g-----~eRt 149 (181)
-..-.- -+...+ +.. +-+...+|++.+...++||| --.+
T Consensus 201 ~~~~~~-------------------------~l~~~~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 201 DAEDMA-------------------------DLPAEY-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred Cccchh-------------------------hCCHhh-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 000000 001111 111 11234688999999999999 2236
Q ss_pred HHHHHHHHHhCCCeEEEEE
Q 036440 150 EKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~i~ 168 (181)
.++.+.++.++||.-..+.
T Consensus 255 ~~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 255 MEALEEAYPDVPFTWLEFE 273 (284)
T ss_pred HHHHHHHHHhCCCceeeec
Confidence 6799999999999765443
No 79
>PRK05785 hypothetical protein; Provisional
Probab=96.05 E-value=0.14 Score=42.97 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=23.4
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcC-CCCeEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLF-GLPSLIEV 179 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~-~~~~viE~ 179 (181)
+-.+.+|++++|+++| +.++..++. |.-.+.-+
T Consensus 189 ~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~ 222 (226)
T PRK05785 189 RLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVG 222 (226)
T ss_pred HCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEE
Confidence 6678899999999984 667777654 44444443
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.99 E-value=0.16 Score=43.03 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEE
Q 036440 128 EESVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPLFGLPSLI 177 (181)
Q Consensus 128 ~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~vi 177 (181)
+....+++.+...++||| ..-..+++...+++.||+..++....+..+++
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 344578899999999999 44567789999999999999988877766554
No 81
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.90 E-value=0.14 Score=46.70 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=69.6
Q ss_pred hhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCCCCCCcceEeccccchhhhH
Q 036440 24 IFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQSIPPVCMIPLRLGYSHIKI 88 (181)
Q Consensus 24 d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~~~P~~d~~~~~~~~~~~~~ 88 (181)
+...-.+||||| +..+.+.+.+|+ |..++.+.. ...+++...|+.+.-...|.+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~I----------- 232 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRI----------- 232 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEE-----------
Confidence 455567999999 344678999998 555555542 224777777765421235776
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------------
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------------- 145 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------------- 145 (181)
+...++|..++..-..+++.++..++|||
T Consensus 233 ----------------------------vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~y 284 (383)
T PRK11705 233 ----------------------------VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKY 284 (383)
T ss_pred ----------------------------EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceee
Confidence 44445555566655677777777887777
Q ss_pred -----ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 -----KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 -----~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.+++...++ .||.+..+..
T Consensus 285 ifp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 285 IFPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred ecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 3457788888766 5888777654
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.85 E-value=0.14 Score=42.54 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccCC----ccCCHHHHHHHHHhC--CCeEEEEE-EcCCCCeEEEEE
Q 036440 131 VKILKICREAITSKA----KLSTEKELESLFVEV--HFHHYKIT-PLFGLPSLIEVY 180 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g----~eRt~~E~~~Ll~~a--Gf~~~~i~-~~~~~~~viE~~ 180 (181)
..+|+.+...++||| +....+++.+++++. +|..+++. |..+...=-|.|
T Consensus 145 ~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~ 201 (209)
T PRK11188 145 ELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 201 (209)
T ss_pred HHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeE
Confidence 468999999999999 444455666667775 89888876 555544434443
No 83
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.71 E-value=0.024 Score=46.57 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=67.4
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC----CCC--cceEeccc
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS----IPP--VCMIPLRL 81 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~----~P~--~d~~~~~~ 81 (181)
...+++|+| .+|+.+.+.+|. |+.++.+.. .++++++.+|+.+. ++. .|.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V---- 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRI---- 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceE----
Confidence 457899999 679989999998 555654431 26799999998432 322 3555
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeee------ccCChHHHHHHHHHHHHHhccCC-------ccC
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII------HVFGDEESVKILKICREAITSKA-------KLS 148 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL------Hdw~D~~~~~iL~~~~~a~~~~g-------~eR 148 (181)
++.... |+-.......+|++++..++|+| ...
T Consensus 116 -----------------------------------~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 116 -----------------------------------YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred -----------------------------------EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 211111 11111234679999999999999 344
Q ss_pred CHHHHHHHHHhCCCeEE
Q 036440 149 TEKELESLFVEVHFHHY 165 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~ 165 (181)
-.+++.+.+++.||...
T Consensus 161 ~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 161 YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HHHHHHHHHHhCccccc
Confidence 56678888899998765
No 84
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.70 E-value=0.1 Score=41.64 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=63.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
..+++.. .....++++|+| .+|+.+.+..|. |..++.+.. .+.++++..|+++.++.
T Consensus 21 ~lL~~~l--~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~ 98 (170)
T PF05175_consen 21 RLLLDNL--PKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGK 98 (170)
T ss_dssp HHHHHHH--HHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTC
T ss_pred HHHHHHH--hhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccc
Confidence 3455555 334778999999 899999999998 455554432 22399999999998873
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh---HHHHHHHHHHHHHhccCC
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD---EESVKILKICREAITSKA 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D---~~~~~iL~~~~~a~~~~g 145 (181)
.|++ +..-=+|.-.+ +-..++++.+...++|+|
T Consensus 99 fD~I---------------------------------------v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 99 FDLI---------------------------------------VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp EEEE---------------------------------------EE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred eeEE---------------------------------------EEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence 6887 33222444443 345688999999999999
No 85
>PTZ00146 fibrillarin; Provisional
Probab=95.70 E-value=0.23 Score=44.37 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=65.1
Q ss_pred hcCCCeEEEecCC-------------CCceEEEeechh-----hhhhhccCCCceEEecCCCCCC------CCcceEecc
Q 036440 25 FERLGSLVDVGAF-------------PCVKCTEFDQPH-----VVANLLDTNNLKYLADDFFQSI------PPVCMIPLR 80 (181)
Q Consensus 25 ~~~~~~lvDvG~~-------------P~l~~~~~DlP~-----Vv~~a~~~~ri~~~~gDff~~~------P~~d~~~~~ 80 (181)
++.-.+|||+|+- |.=+.+.+|+-+ .++.+....+|..+-+|...+. +..|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV--- 206 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVI--- 206 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEE---
Confidence 3444689999922 233567778653 3444444578999999976431 224665
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------ccC
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------KLS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------~eR 148 (181)
++... ..++...++.+++..|+|+| ...
T Consensus 207 ------------------------------------~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~ 246 (293)
T PTZ00146 207 ------------------------------------FADVA----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTA 246 (293)
T ss_pred ------------------------------------EEeCC----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCC
Confidence 33321 12244456678889999999 122
Q ss_pred CHHHH----HHHHHhCCCeEEEEEEcCC
Q 036440 149 TEKEL----ESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 149 t~~E~----~~Ll~~aGf~~~~i~~~~~ 172 (181)
+.++. .++|+++||+.++...+..
T Consensus 247 ~pe~~f~~ev~~L~~~GF~~~e~v~L~P 274 (293)
T PTZ00146 247 KPEVVFASEVQKLKKEGLKPKEQLTLEP 274 (293)
T ss_pred CHHHHHHHHHHHHHHcCCceEEEEecCC
Confidence 23333 4889999999888876653
No 86
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.62 E-value=0.27 Score=40.53 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=73.5
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC--CcceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP--PVCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P--~~d~~~~~~~~~ 84 (181)
..-.+++|+| ++|..+.+.+|. |..++.+.. -++++++.+|..+-.+ ..|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV------- 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVV------- 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEE-------
Confidence 3457899999 579999999998 555554431 2349999999865322 36777
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHH
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFV 158 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~ 158 (181)
+... . .....+++.++..++||| ......++.++.+
T Consensus 117 --------------------------------~~~~-~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 117 --------------------------------TSRA-V-----ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred --------------------------------EEcc-c-----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence 3322 1 223568899999999999 5667788899999
Q ss_pred hCCCeEEEEE--EcCCC
Q 036440 159 EVHFHHYKIT--PLFGL 173 (181)
Q Consensus 159 ~aGf~~~~i~--~~~~~ 173 (181)
.-|+.+.++. .++|.
T Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 159 ALGGKVEEVIELTLPGL 175 (187)
T ss_pred hcCceEeeeEEEecCCC
Confidence 9999987665 45553
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.61 E-value=0.086 Score=45.74 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=64.7
Q ss_pred CCeEEEec-----------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCCCCC-CcceEeccccchhhh
Q 036440 28 LGSLVDVG-----------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQSIP-PVCMIPLRLGYSHIK 87 (181)
Q Consensus 28 ~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~~P-~~d~~~~~~~~~~~~ 87 (181)
-.+++|+| +.+.-+.+.+|.- ..++.+. ..+++....+|.....+ ..|++
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlV---------- 229 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVI---------- 229 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEE----------
Confidence 37999999 4444578999984 4444443 24566666665332222 25776
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhC
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLSTEKELESLFVEV 160 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~a 160 (181)
+. +++ -+.-.++++.+...++||| .....+++.+.+++.
T Consensus 230 -----------------------------va-n~~----~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 230 -----------------------------VA-NIL----AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG 275 (288)
T ss_pred -----------------------------EE-ecC----HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence 22 222 2234578999999999999 445567888888776
Q ss_pred CCeEEEEEEcCC
Q 036440 161 HFHHYKITPLFG 172 (181)
Q Consensus 161 Gf~~~~i~~~~~ 172 (181)
|+.+++....+
T Consensus 276 -f~~~~~~~~~~ 286 (288)
T TIGR00406 276 -FTVVEIRQREE 286 (288)
T ss_pred -CceeeEeccCC
Confidence 99888765443
No 88
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.57 E-value=0.025 Score=48.20 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=62.5
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCCCCCC--cceEeccccchhhh
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIK 87 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~ 87 (181)
-.++++++++| +--+-+.+..|. |..++.+.. .++|+++..|+=+.+|. .|++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLI---------- 110 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLI---------- 110 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEE----------
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEE----------
Confidence 45678999999 333557899999 777777752 57999999999887776 5898
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-HHHHHHHHHHHHHhccCC
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-EESVKILKICREAITSKA 145 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-~~~~~iL~~~~~a~~~~g 145 (181)
+++-|+|.++| ++-...++++..+++|||
T Consensus 111 -----------------------------V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG 140 (201)
T PF05401_consen 111 -----------------------------VLSEVLYYLDDAEDLRAALDRLVAALAPGG 140 (201)
T ss_dssp -----------------------------EEES-GGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------------EEehHhHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999987 677889999999999999
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.55 E-value=0.11 Score=34.52 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=55.9
Q ss_pred eEEEec-----------CCCCceEEEeechh-hhhhhc------cCCCceEEecCCCCCCC----CcceEeccccchhhh
Q 036440 30 SLVDVG-----------AFPCVKCTEFDQPH-VVANLL------DTNNLKYLADDFFQSIP----PVCMIPLRLGYSHIK 87 (181)
Q Consensus 30 ~lvDvG-----------~~P~l~~~~~DlP~-Vv~~a~------~~~ri~~~~gDff~~~P----~~d~~~~~~~~~~~~ 87 (181)
+++|+| ..+..+.+.+|+.. .+..+. ...++++..+|+.+..+ ..|++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i---------- 70 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVI---------- 70 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEE----------
Confidence 467888 35778899999854 333222 35689999999997542 26887
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++...+|.+ .+...++++.+...++++|
T Consensus 71 -----------------------------~~~~~~~~~-~~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 71 -----------------------------ISDPPLHHL-VEDLARFLEEARRLLKPGG 98 (107)
T ss_pred -----------------------------EEccceeeh-hhHHHHHHHHHHHHcCCCC
Confidence 666677665 6788889999999999987
No 90
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.51 E-value=0.03 Score=45.61 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ 69 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~ 69 (181)
.-..+||+| ++|+...+.+|. +..++.+.. -.+++++.+|+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~ 77 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANE 77 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHH
Confidence 457899999 799999999998 555555431 2589999999875
No 91
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.42 E-value=0.19 Score=43.42 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=33.8
Q ss_pred CCCeEEEec----------CCC-CceEEEeechhhhhhhc---------cCCCceEEecCCCCC
Q 036440 27 RLGSLVDVG----------AFP-CVKCTEFDQPHVVANLL---------DTNNLKYLADDFFQS 70 (181)
Q Consensus 27 ~~~~lvDvG----------~~P-~l~~~~~DlP~Vv~~a~---------~~~ri~~~~gDff~~ 70 (181)
+...||.+| ..| +++...+|+|+|++.-. ..++.++++.|+.++
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 144 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQD 144 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhh
Confidence 467899999 334 58899999999987332 367899999998743
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.27 E-value=0.19 Score=40.63 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=66.2
Q ss_pred HHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC----C
Q 036440 17 ALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP----P 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P----~ 73 (181)
+++.. +...-.+++|+| ..|..+.+.+|. |..++.+.. .++++++.+|..+.++ .
T Consensus 32 l~~~l--~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQL--RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 34444 445567899999 468889999998 777765532 2578999988764221 1
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------c
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------K 146 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~ 146 (181)
.|.+ .+ +. .....++|+.+...++||| .
T Consensus 110 ~d~v---------------------------------------~~-----~~-~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 110 PDRV---------------------------------------CI-----EG-GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCEE---------------------------------------EE-----EC-CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 2333 11 22 2345689999999999999 2
Q ss_pred cCCHHHHHHHHHhC---CCeEEEE
Q 036440 147 LSTEKELESLFVEV---HFHHYKI 167 (181)
Q Consensus 147 eRt~~E~~~Ll~~a---Gf~~~~i 167 (181)
..+..+..+.+++. |+..+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 145 LEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEE
Confidence 22334455566553 5666655
No 93
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.14 E-value=0.19 Score=44.69 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=80.6
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechh-hhh-------hhccCCCceEEecCCCCCCCCc
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPH-VVA-------NLLDTNNLKYLADDFFQSIPPV 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~-------~a~~~~ri~~~~gDff~~~P~~ 74 (181)
+.+++.. .++.-.+||||| .| +++++.+++-. -.+ .....++|++.-.|+-+-...-
T Consensus 62 ~~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 4455556 677778999999 67 89999999842 222 2234678999888876543335
Q ss_pred ceEecccc-chhhhH--Hhhhhhhh----hcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCcc
Q 036440 75 CMIPLRLG-YSHIKI--MIAFFIRL----VVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL 147 (181)
Q Consensus 75 d~~~~~~~-~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~e 147 (181)
|.+ .+.+ |-|+.. --+||-+. .+|+ .++|..|++.-.... .--.=+.+-+-|||..
T Consensus 139 DrI-vSvgmfEhvg~~~~~~ff~~~~~~L~~~G--------------~~llh~I~~~~~~~~--~~~~~i~~yiFPgG~l 201 (283)
T COG2230 139 DRI-VSVGMFEHVGKENYDDFFKKVYALLKPGG--------------RMLLHSITGPDQEFR--RFPDFIDKYIFPGGEL 201 (283)
T ss_pred cee-eehhhHHHhCcccHHHHHHHHHhhcCCCc--------------eEEEEEecCCCcccc--cchHHHHHhCCCCCcC
Confidence 544 1111 111111 12222221 3333 334444444433321 2233345566789999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEc
Q 036440 148 STEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+|..+......++||.+..+...
T Consensus 202 Ps~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 202 PSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred CCHHHHHHHHHhcCcEEehHhhh
Confidence 99999999999999998766443
No 94
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=94.64 E-value=0.9 Score=38.83 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=72.0
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCCCCC-----CcceEeccccchhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQSIP-----PVCMIPLRLGYSHI 86 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~~~P-----~~d~~~~~~~~~~~ 86 (181)
..+++|+| .+|..+.+.+|. |..++.+.. ..+++++.+|+++.++ ..|++..+-=|...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 34899999 678889999998 777766543 2346889999987654 25777444433100
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeec--cCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIH--VFGDEESVKILKICREAITSKA------KLSTEKELESLFV 158 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLH--dw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~ 158 (181)
.- .+.++... .++ --+.-|- .=.-+--.+|++++...++|+| .....++..++++
T Consensus 167 ~~-----------~~~~~~e~-~~~-----ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~ 229 (251)
T TIGR03704 167 DA-----------IALMPPEA-RDH-----EPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFA 229 (251)
T ss_pred hh-----------hhcCCHHH-HhC-----CCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHH
Confidence 00 00000000 000 0000000 0001123478888889999999 4455778899999
Q ss_pred hCCCeEEEEE
Q 036440 159 EVHFHHYKIT 168 (181)
Q Consensus 159 ~aGf~~~~i~ 168 (181)
+.||...-+.
T Consensus 230 ~~g~~~~~~~ 239 (251)
T TIGR03704 230 RAGLIARVAS 239 (251)
T ss_pred HCCCCceeeE
Confidence 9999765443
No 95
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=94.48 E-value=0.98 Score=38.76 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHhhhh-hcCCCeEEEec----------CCCCceEEEeechh-hhhhh------------------ccCCCceEEe
Q 036440 15 SLALKYCKQI-FERLGSLVDVG----------AFPCVKCTEFDQPH-VVANL------------------LDTNNLKYLA 64 (181)
Q Consensus 15 ~~~l~~~~~d-~~~~~~lvDvG----------~~P~l~~~~~DlP~-Vv~~a------------------~~~~ri~~~~ 64 (181)
+.+.+.++.. ...-.+|++.| +--+.+.+.+|+-+ -++.+ ....+|++..
T Consensus 30 p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (226)
T PRK13256 30 EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV 109 (226)
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE
Confidence 4555666421 12236899998 44566799999954 34332 0146899999
Q ss_pred cCCCCCCC------CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH
Q 036440 65 DDFFQSIP------PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR 138 (181)
Q Consensus 65 gDff~~~P------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~ 138 (181)
+|||+--| ..|.+ +=+.++|-.+.+...+..+.++
T Consensus 110 gD~f~l~~~~~~~~~fD~V---------------------------------------yDra~~~Alpp~~R~~Y~~~l~ 150 (226)
T PRK13256 110 ADIFNLPKIANNLPVFDIW---------------------------------------YDRGAYIALPNDLRTNYAKMML 150 (226)
T ss_pred ccCcCCCccccccCCcCee---------------------------------------eeehhHhcCCHHHHHHHHHHHH
Confidence 99997422 24776 6778888999999999999999
Q ss_pred HHhccCC-----------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 139 EAITSKA-----------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 139 ~a~~~~g-----------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
..++|+| ...|.+|+++++.. +|.+..+.
T Consensus 151 ~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~ 196 (226)
T PRK13256 151 EVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA-KIKFELID 196 (226)
T ss_pred HHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC-CceEEEee
Confidence 9999998 44688999999964 44444443
No 96
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.48 E-value=0.4 Score=41.94 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=84.5
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhh-hhh-------ccCCCceEEecCCCCC---CC
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVV-ANL-------LDTNNLKYLADDFFQS---IP 72 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv-~~a-------~~~~ri~~~~gDff~~---~P 72 (181)
.++..|. .....++++|+| ++|.++.+.+++-+.. +.| ...+||+++.+|+-+- .+
T Consensus 34 iLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 34 ILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHHhhc-ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 3556554 445589999999 8888999999986543 333 2478999999998653 22
Q ss_pred C--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----
Q 036440 73 P--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----- 145 (181)
Q Consensus 73 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----- 145 (181)
. .|++-.+==|+-.-... +.+. .+-+=|.-..-.--.+++.++..++++|
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~-----------~~~~------------~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRL-----------NENP------------LRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ccccCEEEeCCCCCCCcccc-----------CcCh------------hhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 2 36663332221000000 0000 0000000011112368899999999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEEEcC---CC---CeEEEEE
Q 036440 146 -KLSTEKELESLFVEVHFHHYKITPLF---GL---PSLIEVY 180 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~~~~---~~---~~viE~~ 180 (181)
+.=...|+-+++.+.+|..-++..+. +. .-+||+.
T Consensus 170 ~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~ 211 (248)
T COG4123 170 HRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAI 211 (248)
T ss_pred ecHHHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEe
Confidence 66667789999999999887776543 33 2456654
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=94.41 E-value=0.47 Score=42.23 Aligned_cols=116 Identities=7% Similarity=0.035 Sum_probs=69.7
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC--cceEeccccchhhhHHhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKIMIA 91 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~~~~ 91 (181)
-++|+|+| +.+..+.+.+|+ |..++.++. .++++++.+|+++..+. .|++..+--|.+..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~---- 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKIN---- 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccC----
Confidence 46899999 456678899998 556655543 46899999999975432 58885544432210
Q ss_pred hhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------ccCCHHHHHHHHH
Q 036440 92 FFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------KLSTEKELESLFV 158 (181)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------~eRt~~E~~~Ll~ 158 (181)
..+...|++|--+-.-.+.+ .-.+.++....-|.|+| ..-+.+||+.+|+
T Consensus 141 ----------~~d~~~~~~~~GG~~g~~~l-------~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~ 203 (279)
T PHA03411 141 ----------TTDTKDVFEYTGGEFEFKVM-------TLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSK 203 (279)
T ss_pred ----------chhhhhhhhhccCccccccc-------cHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHH
Confidence 00011111110000000000 01356677777788888 6678899999999
Q ss_pred hCCCeE
Q 036440 159 EVHFHH 164 (181)
Q Consensus 159 ~aGf~~ 164 (181)
++||..
T Consensus 204 ~~g~~~ 209 (279)
T PHA03411 204 QTGLVT 209 (279)
T ss_pred hcCcEe
Confidence 999974
No 98
>PRK01581 speE spermidine synthase; Validated
Probab=94.17 E-value=0.22 Score=45.97 Aligned_cols=107 Identities=6% Similarity=0.011 Sum_probs=67.4
Q ss_pred cCCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhcc-------------CCCceEEecCCCCCCCC----cc
Q 036440 26 ERLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLLD-------------TNNLKYLADDFFQSIPP----VC 75 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~~-------------~~ri~~~~gDff~~~P~----~d 75 (181)
.+.++||++| ++|. .+.+++|+ |.+++.++. .+|++++-+|.++-++. .|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999 7775 57888888 667776652 57999999988764322 47
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCcc-------C
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL-------S 148 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~e-------R 148 (181)
++.+++-- -.-+.-+.-.....++.|+..++|||.- .
T Consensus 229 VIIvDl~D------------------------------------P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 229 VIIIDFPD------------------------------------PATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred EEEEcCCC------------------------------------ccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 76222100 0000011123457899999999999921 0
Q ss_pred ----CHHHHHHHHHhCCCeEEEEE
Q 036440 149 ----TEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 149 ----t~~E~~~Ll~~aGf~~~~i~ 168 (181)
-.......|+++||......
T Consensus 273 ~~~~~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 273 DAPLVYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred hhHHHHHHHHHHHHHhCCceEEEE
Confidence 11235677899999876543
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=94.10 E-value=0.35 Score=42.63 Aligned_cols=113 Identities=16% Similarity=0.027 Sum_probs=72.7
Q ss_pred hhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC--cceEeccccc
Q 036440 24 IFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP--VCMIPLRLGY 83 (181)
Q Consensus 24 d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~--~d~~~~~~~~ 83 (181)
++..-..++|.| +..+.+.+..|. |..+..+.. ...+.+..+|+.+. .+. .|.+..+.-|
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCC
Confidence 455567899988 555678889998 556654431 23388999999862 322 5777443221
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeee-ccCChHHHHHHHHHHHHHhccCC----ccCCHHHHHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII-HVFGDEESVKILKICREAITSKA----KLSTEKELESLFV 158 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL-Hdw~D~~~~~iL~~~~~a~~~~g----~eRt~~E~~~Ll~ 158 (181)
. . +.-. ++...+--.++|+.+++.++||| -..+..+++.+++
T Consensus 259 g----------------------------~-----~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~ 305 (329)
T TIGR01177 259 G----------------------------R-----STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAE 305 (329)
T ss_pred c----------------------------C-----cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHh
Confidence 0 0 0000 11223345689999999999999 3445568899999
Q ss_pred hCCCeEEEEEEc
Q 036440 159 EVHFHHYKITPL 170 (181)
Q Consensus 159 ~aGf~~~~i~~~ 170 (181)
++|| +....+.
T Consensus 306 ~~g~-i~~~~~~ 316 (329)
T TIGR01177 306 DAFR-VVKRFEV 316 (329)
T ss_pred hcCc-chheeee
Confidence 9999 7766554
No 100
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.11 Score=46.77 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=77.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechh-hhhhhcc------CCCceEEecCCCCCCCC-c
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPH-VVANLLD------TNNLKYLADDFFQSIPP-V 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a~~------~~ri~~~~gDff~~~P~-~ 74 (181)
+.+++.++ ...-.+++|+| .+|+.+.+.+|.-. .++.++. -++..+...|.|+++.. -
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 56778884 33344999999 89999999999864 4444432 12336788899988765 6
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc---CChHHHHHHHHHHHHHhccCCcc----
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV---FGDEESVKILKICREAITSKAKL---- 147 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd---w~D~~~~~iL~~~~~a~~~~g~e---- 147 (181)
|+| +..==+|. -.+.-+.+|++...+.+.+||+.
T Consensus 226 d~I---------------------------------------isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 226 DLI---------------------------------------ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cEE---------------------------------------EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 777 33333332 34555669999999999999911
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 148 STEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
....-|+.+|++. |+.+.+.--.+..-|+.++
T Consensus 267 n~~l~y~~~L~~~-Fg~v~~la~~~gf~Vl~a~ 298 (300)
T COG2813 267 NRHLPYEKKLKEL-FGNVEVLAKNGGFKVLRAK 298 (300)
T ss_pred cCCCChHHHHHHh-cCCEEEEEeCCCEEEEEEe
Confidence 1223344444443 4444444444444455443
No 101
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=93.83 E-value=0.4 Score=40.27 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=74.8
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeechhh-hhhhc-----cCCCceEEecCCCCC-CCC-cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQPHV-VANLL-----DTNNLKYLADDFFQS-IPP-VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~DlP~V-v~~a~-----~~~ri~~~~gDff~~-~P~-~d~ 76 (181)
+.++++. +.-..+++||+| +--+...+.+|.-.+ ++.+. ..-.|+....|+-+. +|. .|.
T Consensus 20 s~v~~a~--~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 20 SEVLEAV--PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHHC--TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHH--hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 5677777 455678999999 556778999998653 33221 133488889998753 444 577
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++|-.+.+...+|+++..+++.|||
T Consensus 98 I---------------------------------------~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~ 138 (192)
T PF03848_consen 98 I---------------------------------------VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP 138 (192)
T ss_dssp E---------------------------------------EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S
T ss_pred E---------------------------------------EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC
Confidence 7 66677888888999999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
-.....|+...++ ||++.+..
T Consensus 139 d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 139 DYPCPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp SS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred CCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 3344567777665 68776643
No 102
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.78 E-value=0.92 Score=38.30 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=71.0
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc------cCCCceEEecCCCCC---CCCcceEecccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------DTNNLKYLADDFFQS---IPPVCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------~~~ri~~~~gDff~~---~P~~d~~~~~~~ 82 (181)
...-..++||| ..|..|.+.+|. |..++... .-++++.++||.-+. +|..|.+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~dai----- 106 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAI----- 106 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEE-----
Confidence 34457999999 599999999997 34443322 178999999998754 4557887
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccCCHHHHHH
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLSTEKELES 155 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~ 155 (181)
++. .-..--.||+.|-+.++|+| ..=|....-+
T Consensus 107 ----------------------------------FIG------Gg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~ 146 (187)
T COG2242 107 ----------------------------------FIG------GGGNIEEILEAAWERLKPGGRLVANAITLETLAKALE 146 (187)
T ss_pred ----------------------------------EEC------CCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHH
Confidence 333 12445579999999999999 4455666677
Q ss_pred HHHhCCC-eEEEE
Q 036440 156 LFVEVHF-HHYKI 167 (181)
Q Consensus 156 Ll~~aGf-~~~~i 167 (181)
.+++.|+ .++++
T Consensus 147 ~~~~~g~~ei~~v 159 (187)
T COG2242 147 ALEQLGGREIVQV 159 (187)
T ss_pred HHHHcCCceEEEE
Confidence 7889999 55555
No 103
>PLN02672 methionine S-methyltransferase
Probab=93.65 E-value=0.62 Score=48.27 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhccCC------ccCCHHHHH-HHHHhCCCeEEEEEEc
Q 036440 131 VKILKICREAITSKA------KLSTEKELE-SLFVEVHFHHYKITPL 170 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g------~eRt~~E~~-~Ll~~aGf~~~~i~~~ 170 (181)
++|++.+...++|+| -.+--+... +++++.||+.+++|..
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 578888888999999 555566788 6999999999988854
No 104
>PLN02366 spermidine synthase
Probab=93.60 E-value=0.67 Score=41.28 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=38.1
Q ss_pred cCCCeEEEec-----------CCCCc-eEEEeechh-hhhhhcc----------CCCceEEecCCC---CCCCC--cceE
Q 036440 26 ERLGSLVDVG-----------AFPCV-KCTEFDQPH-VVANLLD----------TNNLKYLADDFF---QSIPP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l-~~~~~DlP~-Vv~~a~~----------~~ri~~~~gDff---~~~P~--~d~~ 77 (181)
.+.++||||| +||.+ +.+++|+.. |++.++. .+|++++.+|.+ +..|. .|++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999 88875 688899854 6665532 579999999975 34442 5777
No 105
>PRK00811 spermidine synthase; Provisional
Probab=93.54 E-value=0.38 Score=41.83 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=37.0
Q ss_pred CCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhc-----------cCCCceEEecCCCCCCC----CcceE
Q 036440 27 RLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLL-----------DTNNLKYLADDFFQSIP----PVCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~-----------~~~ri~~~~gDff~~~P----~~d~~ 77 (181)
..++|||+| ++|. .+.+.+|+ |.+++.++ ..+|++++.+|..+-++ ..|++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 567999999 7765 47899998 56766553 25799999999875332 25777
No 106
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.04 E-value=0.19 Score=44.04 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=71.4
Q ss_pred CeEEEec----------CCCCceEEEeech-hhhhhhcc---CC--CceEEecCCCCC-CC--CcceEeccccchhhhHH
Q 036440 29 GSLVDVG----------AFPCVKCTEFDQP-HVVANLLD---TN--NLKYLADDFFQS-IP--PVCMIPLRLGYSHIKIM 89 (181)
Q Consensus 29 ~~lvDvG----------~~P~l~~~~~DlP-~Vv~~a~~---~~--ri~~~~gDff~~-~P--~~d~~~~~~~~~~~~~~ 89 (181)
.+||||| |--+.+.+..|.- .-++.++. .. .|.|....-.+- .. ..|++
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV------------ 128 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVV------------ 128 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEE------------
Confidence 4799999 5556888999984 45665553 22 233444433321 11 25666
Q ss_pred hhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------
Q 036440 90 IAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------------ 145 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------ 145 (181)
.--.+|+.-+|.+. ++++|.+.++|+|
T Consensus 129 ---------------------------~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~v 179 (243)
T COG2227 129 ---------------------------TCMEVLEHVPDPES--FLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYV 179 (243)
T ss_pred ---------------------------EEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHH
Confidence 55666677777776 9999999999999
Q ss_pred ------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
|-...+|...++.++|++......+
T Consensus 180 l~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 180 LRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 8888999999999999988777654
No 107
>PRK14967 putative methyltransferase; Provisional
Probab=92.88 E-value=2.4 Score=35.00 Aligned_cols=118 Identities=7% Similarity=-0.040 Sum_probs=66.5
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeech-hhhhhhcc-----CCCceEEecCCCCCCCC--cceEeccccchh
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQP-HVVANLLD-----TNNLKYLADDFFQSIPP--VCMIPLRLGYSH 85 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~~-----~~ri~~~~gDff~~~P~--~d~~~~~~~~~~ 85 (181)
...-.+++|+| +.+..+.+.+|.. ..++.+.. .-+++++.+|+.+.+|. .|++..+..|..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCC
Confidence 44457999999 3344478999985 44543321 23688999999876653 588854443211
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-----hHHHHHHHHHHHHHhccCC------ccC-CHHHH
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-----DEESVKILKICREAITSKA------KLS-TEKEL 153 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-----D~~~~~iL~~~~~a~~~~g------~eR-t~~E~ 153 (181)
..-+ +. .-+...+.|+ .+...++++.+...++++| .+. +.+++
T Consensus 114 ~~~~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~ 168 (223)
T PRK14967 114 APPD---------AP----------------PSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERT 168 (223)
T ss_pred CCcc---------cc----------------cccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHH
Confidence 0000 00 0000000111 1123457777888888888 222 55678
Q ss_pred HHHHHhCCCeEEEE
Q 036440 154 ESLFVEVHFHHYKI 167 (181)
Q Consensus 154 ~~Ll~~aGf~~~~i 167 (181)
.+++++.||....+
T Consensus 169 ~~~l~~~g~~~~~~ 182 (223)
T PRK14967 169 LTRLSEAGLDAEVV 182 (223)
T ss_pred HHHHHHCCCCeEEE
Confidence 88888888865444
No 108
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.87 E-value=0.79 Score=40.76 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEE
Q 036440 127 DEESVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPLFGLPSLI 177 (181)
Q Consensus 127 D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~vi 177 (181)
.+--..+...+...++|+| ..-..++..+.+++ ||+..+.....+..+++
T Consensus 235 ~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~ 291 (295)
T PF06325_consen 235 ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALV 291 (295)
T ss_dssp HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEE
Confidence 4455667777788888888 44455788888877 99999888777665544
No 109
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=92.72 E-value=0.1 Score=43.63 Aligned_cols=50 Identities=12% Similarity=0.318 Sum_probs=38.6
Q ss_pred CCCceEEecCCCCCCCC---cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHH
Q 036440 57 TNNLKYLADDFFQSIPP---VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKI 133 (181)
Q Consensus 57 ~~ri~~~~gDff~~~P~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~i 133 (181)
..+|+|..+|.++..|. -|++ +.++||-.++++...+|
T Consensus 117 r~~V~F~~~NL~~~~~~~~~fD~I---------------------------------------~CRNVlIYF~~~~~~~v 157 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDPPFGRFDLI---------------------------------------FCRNVLIYFDPETQQRV 157 (196)
T ss_dssp HTTEEEEE--TT-S------EEEE---------------------------------------EE-SSGGGS-HHHHHHH
T ss_pred cCceEEEecccCCCCcccCCccEE---------------------------------------EecCEEEEeCHHHHHHH
Confidence 46899999999983332 5888 99999999999999999
Q ss_pred HHHHHHHhccCC
Q 036440 134 LKICREAITSKA 145 (181)
Q Consensus 134 L~~~~~a~~~~g 145 (181)
+++++.+|+|||
T Consensus 158 l~~l~~~L~pgG 169 (196)
T PF01739_consen 158 LRRLHRSLKPGG 169 (196)
T ss_dssp HHHHGGGEEEEE
T ss_pred HHHHHHHcCCCC
Confidence 999999999999
No 110
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=92.34 E-value=0.7 Score=40.91 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=43.7
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------------ccCCHHHHHHHHHhC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA------------------------------------KLSTEKELESLFVEV 160 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------------~eRt~~E~~~Ll~~a 160 (181)
.|-.+|---..+.-.+.++|+++.++||| .--|.+|+++|+.+|
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 56666666778999999999999999999 345899999999999
Q ss_pred CCeEEEE
Q 036440 161 HFHHYKI 167 (181)
Q Consensus 161 Gf~~~~i 167 (181)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9988765
No 111
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=92.28 E-value=3.3 Score=36.24 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=75.9
Q ss_pred eEEEec------------CCCCceEEEeec-hhhhhhhcc-----C-CCceEEecCCCCCCCC-cceEeccccchhhhHH
Q 036440 30 SLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----T-NNLKYLADDFFQSIPP-VCMIPLRLGYSHIKIM 89 (181)
Q Consensus 30 ~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~-~ri~~~~gDff~~~P~-~d~~~~~~~~~~~~~~ 89 (181)
+++|+| +.|+.+.+..|+ |..++.|.. . .|+..+.+|+|+.++. .|++.-+==| +.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPY--ip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPY--IPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCC--CCCc
Confidence 799999 899999999998 566654431 2 5667777799998875 6877222211 1110
Q ss_pred hhhhhhhhcC--CCccchhhhhhcccccceeeeeeccC-ChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHHhC
Q 036440 90 IAFFIRLVVG--RGRLHIFSWLNFMKRVINMQIIIHVF-GDEESVKILKICREAITSKA------KLSTEKELESLFVEV 160 (181)
Q Consensus 90 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~iLHdw-~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~a 160 (181)
.. ...++ ++.-+.- .+..- +-+--.+|+......+.++| ..-..++.++++.+.
T Consensus 191 ~~---~~~~~~~~~EP~~A--------------l~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~ 253 (280)
T COG2890 191 DP---ELLPEVVRYEPLLA--------------LVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDT 253 (280)
T ss_pred cc---ccChhhhccCHHHH--------------HccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhc
Confidence 00 00000 0000000 00011 11234478888888999988 445678899999999
Q ss_pred C-CeEEEEEEc-CCCCeEE
Q 036440 161 H-FHHYKITPL-FGLPSLI 177 (181)
Q Consensus 161 G-f~~~~i~~~-~~~~~vi 177 (181)
| |..+.+.+- .+..-++
T Consensus 254 ~~~~~v~~~~d~~g~~rv~ 272 (280)
T COG2890 254 GFFEIVETLKDLFGRDRVV 272 (280)
T ss_pred CCceEEEEEecCCCceEEE
Confidence 9 776666654 4444444
No 112
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=92.28 E-value=1.9 Score=39.19 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=40.5
Q ss_pred ceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------ccCCHHHHHHHHHhCCCeEE
Q 036440 116 INMQIIIHVFGDEESVKILKICREAITSKA------------------------------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 116 ~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
+.|..+-|.=+.-+ .|+.++.++.+|| -..|..-++.+|+++||+.+
T Consensus 187 F~MGVLYHrr~Pl~---~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 187 FSMGVLYHRRSPLD---HLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred EEeeehhccCCHHH---HHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence 46666667666655 4566678888888 45689999999999999999
Q ss_pred EEEEc
Q 036440 166 KITPL 170 (181)
Q Consensus 166 ~i~~~ 170 (181)
++...
T Consensus 264 ~~v~~ 268 (315)
T PF08003_consen 264 RCVDV 268 (315)
T ss_pred EEecC
Confidence 99754
No 113
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.25 E-value=1.3 Score=39.81 Aligned_cols=50 Identities=6% Similarity=0.051 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeE
Q 036440 127 DEESVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPLFGLPSL 176 (181)
Q Consensus 127 D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~v 176 (181)
-+--+++...+...++|+| -..-.+...+-++++||.++++....+...+
T Consensus 239 A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i 295 (300)
T COG2264 239 AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAI 295 (300)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEE
Confidence 4455677888888999998 2333778888899999999998876665443
No 114
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.18 E-value=0.45 Score=42.73 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=28.5
Q ss_pred cceeeeeeccCChHHHHHHHHHHHH-HhccCC
Q 036440 115 VINMQIIIHVFGDEESVKILKICRE-AITSKA 145 (181)
Q Consensus 115 ~~~l~~iLHdw~D~~~~~iL~~~~~-a~~~~g 145 (181)
++++...+.++.++++...|++++. .|.|++
T Consensus 160 ~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d 191 (319)
T TIGR03439 160 ILWLGSSIGNFSRPEAAAFLAGFLATALSPSD 191 (319)
T ss_pred EEEeCccccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 4488999999999999999999999 999987
No 115
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=91.81 E-value=1.3 Score=39.51 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.6
Q ss_pred eeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 119 QIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 119 ~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++|=-+|.|+.-++.++++..-+.|||
T Consensus 177 kWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 177 KWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred eeEecccccHHHHHHHHHHHHhhCcCc
Confidence 344448999999999999999999999
No 116
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=91.61 E-value=0.25 Score=43.78 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCCceEEecCCCC-CCCC---cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHH
Q 036440 57 TNNLKYLADDFFQ-SIPP---VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVK 132 (181)
Q Consensus 57 ~~ri~~~~gDff~-~~P~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~ 132 (181)
..+|+|..+|.++ +.|. -|++ +.+++|..++++...+
T Consensus 203 r~~V~F~~~NL~~~~~~~~~~fD~I---------------------------------------~cRNvliyF~~~~~~~ 243 (287)
T PRK10611 203 ANYVDFQQLNLLAKQWAVPGPFDAI---------------------------------------FCRNVMIYFDKTTQER 243 (287)
T ss_pred HccCEEEcccCCCCCCccCCCccee---------------------------------------eHhhHHhcCCHHHHHH
Confidence 4788999999997 3442 5888 8999999999999999
Q ss_pred HHHHHHHHhccCC
Q 036440 133 ILKICREAITSKA 145 (181)
Q Consensus 133 iL~~~~~a~~~~g 145 (181)
++++++.+++|||
T Consensus 244 vl~~l~~~L~pgG 256 (287)
T PRK10611 244 ILRRFVPLLKPDG 256 (287)
T ss_pred HHHHHHHHhCCCc
Confidence 9999999999999
No 117
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=90.71 E-value=0.5 Score=42.23 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=67.5
Q ss_pred CeEEEec----------CCCCceEEEeec-hhhhhhhcc--------CC----CceEEecCCCCCCCCcceEeccccchh
Q 036440 29 GSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD--------TN----NLKYLADDFFQSIPPVCMIPLRLGYSH 85 (181)
Q Consensus 29 ~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~--------~~----ri~~~~gDff~~~P~~d~~~~~~~~~~ 85 (181)
.++|||| +-=+...+..|. +..|+.|+. .. |+++...|.=...+..|++
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaV-------- 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAV-------- 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccccccee--------
Confidence 5699999 333567889998 456666642 22 5777666665555667877
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
...-+||.-.|- ..+|+.+.+.++|+|
T Consensus 163 -------------------------------vcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~ 209 (282)
T KOG1270|consen 163 -------------------------------VCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAGTIFL 209 (282)
T ss_pred -------------------------------eeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhccccH
Confidence 444455443332 346666666667766
Q ss_pred ----------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ----------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ----------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+-.+.+|..+++.++|+.+..+.
T Consensus 210 ~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~ 248 (282)
T KOG1270|consen 210 AEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVV 248 (282)
T ss_pred HHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhh
Confidence 78899999999999999877664
No 118
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.57 E-value=2 Score=35.56 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +.+.-.+++||| .-+..+.+.+|. |+.++.+.. -++++++.+|.++.+|.
T Consensus 67 ~~~~~l--~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 67 IMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHc--CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 344555 566778999999 124457788887 566654432 35899999999876543
Q ss_pred -cceE
Q 036440 74 -VCMI 77 (181)
Q Consensus 74 -~d~~ 77 (181)
.|.+
T Consensus 145 ~fD~I 149 (212)
T PRK13942 145 PYDRI 149 (212)
T ss_pred CcCEE
Confidence 5877
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.17 E-value=7.1 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 130 SVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 130 ~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..++|++++..++||| ......++-..+++ +|..+++.+.
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 171 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK-LFEKVKVTKP 171 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh-hhceEEEeCC
Confidence 4578999999999999 34445566666655 4877777644
No 120
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=89.08 E-value=3 Score=35.73 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=34.5
Q ss_pred cCCCeEEEec-----------CCC-CceEEEeech-hhhhhhcc----------CCCceEEecCCCCCC---CC-cceE
Q 036440 26 ERLGSLVDVG-----------AFP-CVKCTEFDQP-HVVANLLD----------TNNLKYLADDFFQSI---PP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P-~l~~~~~DlP-~Vv~~a~~----------~~ri~~~~gDff~~~---P~-~d~~ 77 (181)
++.++|+++| +++ ..+.++.|+- .+++.+.. .+|++++.+|.++-+ +. .|++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3557999999 454 4568888874 56554431 468888888887522 22 5777
No 121
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=89.06 E-value=2.1 Score=37.81 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 128 EESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 128 ~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..+.-|..+...++||| -|-|.+|+..++++.||++.+-.
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 445677888899999998 36789999999999999987643
No 122
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=88.98 E-value=1.4 Score=41.58 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=72.0
Q ss_pred cCCCeEEEec-----------CCCCc-eEEEeec-hhhhhhhcc-------------CCCceEEecCCCCCCCCcceEec
Q 036440 26 ERLGSLVDVG-----------AFPCV-KCTEFDQ-PHVVANLLD-------------TNNLKYLADDFFQSIPPVCMIPL 79 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l-~~~~~Dl-P~Vv~~a~~-------------~~ri~~~~gDff~~~P~~d~~~~ 79 (181)
.+.++++=+| +||+. +.+..|+ |.+++.++. .+|++.+..|.|+-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w--------- 358 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW--------- 358 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH---------
Confidence 3557777777 99965 6789998 788887652 45666666666653
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH--------HHHHHHHHHHHhccCC------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE--------SVKILKICREAITSKA------ 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~--------~~~iL~~~~~a~~~~g------ 145 (181)
++-.+. +...++-|..|.. +.+.-+..+..++++|
T Consensus 359 -----------------------------lr~a~~--~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 359 -----------------------------LRTAAD--MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred -----------------------------HHhhcc--cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 332222 3366667777765 3456677788899888
Q ss_pred -----ccCCHHHHHHHHHhCCCeEEEE---EEcCCCCeEEE
Q 036440 146 -----KLSTEKELESLFVEVHFHHYKI---TPLFGLPSLIE 178 (181)
Q Consensus 146 -----~eRt~~E~~~Ll~~aGf~~~~i---~~~~~~~~viE 178 (181)
+.+..=-.-.-+++|||...-. +|.+|--+.+-
T Consensus 408 gs~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l 448 (508)
T COG4262 408 GSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFIL 448 (508)
T ss_pred CCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceee
Confidence 3333334456688999886433 26666444443
No 123
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=87.70 E-value=4.8 Score=37.01 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=71.1
Q ss_pred HHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CCC
Q 036440 17 ALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IPP 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P~ 73 (181)
++... +...-.+++|+| . .|..+.+.+|+ |..++.+.. -++++++.+|+.+. ++.
T Consensus 242 v~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPAL--DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHh--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 33444 445557899999 2 25668899998 555554421 23599999998753 333
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeee---eeccCChHH-------HHHHHHHHHHHhc
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQI---IIHVFGDEE-------SVKILKICREAIT 142 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---iLHdw~D~~-------~~~iL~~~~~a~~ 142 (181)
.|.+.++.-+|+. | .+++ +.-.++.++ ..+||+++...++
T Consensus 320 ~fD~Vl~D~Pcsg~--------------G---------------~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk 370 (444)
T PRK14902 320 KFDKILVDAPCSGL--------------G---------------VIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK 370 (444)
T ss_pred cCCEEEEcCCCCCC--------------e---------------eeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6888555432211 0 0000 000122222 3478999999999
Q ss_pred cCC----------ccCCHHHHHHHHHhC-CCeEEEEE
Q 036440 143 SKA----------KLSTEKELESLFVEV-HFHHYKIT 168 (181)
Q Consensus 143 ~~g----------~eRt~~E~~~Ll~~a-Gf~~~~i~ 168 (181)
||| .+-.+...+.++++. +|+.+.+.
T Consensus 371 pGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~ 407 (444)
T PRK14902 371 KGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQ 407 (444)
T ss_pred CCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccc
Confidence 999 222445566677765 48776553
No 124
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=87.39 E-value=7.2 Score=36.25 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhc------cCCCceEEecCCC---CCCCC--cceE
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------DTNNLKYLADDFF---QSIPP--VCMI 77 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------~~~ri~~~~gDff---~~~P~--~d~~ 77 (181)
-..+|||| ++|+...+.+|+ +..++.+. .-++|.++.+|.- +.+|. .|.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 35899999 899999999997 44444332 1357999999973 44554 3554
No 125
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=87.04 E-value=1.4 Score=37.24 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=76.3
Q ss_pred HHHHHHhhh-hhcCCCeEEEec----------CCCCceEEEeechh-hhhhh----c--------------cCCCceEEe
Q 036440 15 SLALKYCKQ-IFERLGSLVDVG----------AFPCVKCTEFDQPH-VVANL----L--------------DTNNLKYLA 64 (181)
Q Consensus 15 ~~~l~~~~~-d~~~~~~lvDvG----------~~P~l~~~~~DlP~-Vv~~a----~--------------~~~ri~~~~ 64 (181)
+.+.+.++. ....-.++++.| +--+...+.+|+-+ .++.+ . ..++|++..
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 556666542 133446899998 33466899999954 44433 0 146899999
Q ss_pred cCCCCCCCC----cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 65 DDFFQSIPP----VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 65 gDff~~~P~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
||||+--|. .|++ +=+..+|-.+.+...+--+.++..
T Consensus 104 gDfF~l~~~~~g~fD~i---------------------------------------yDr~~l~Alpp~~R~~Ya~~l~~l 144 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLI---------------------------------------YDRTFLCALPPEMRERYAQQLASL 144 (218)
T ss_dssp S-TTTGGGSCHHSEEEE---------------------------------------EECSSTTTS-GGGHHHHHHHHHHC
T ss_pred cccccCChhhcCCceEE---------------------------------------EEecccccCCHHHHHHHHHHHHHH
Confidence 999983332 3777 445566777788888888888888
Q ss_pred hccCC------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 141 ITSKA------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 141 ~~~~g------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
++|+| -..+.+|+++++. .+|++..+..
T Consensus 145 l~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 145 LKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred hCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 88887 4678999999999 9998877754
No 126
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.55 E-value=5.6 Score=32.60 Aligned_cols=53 Identities=11% Similarity=-0.032 Sum_probs=35.7
Q ss_pred hcCCCeEEEec------------CC-CCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC---cceE
Q 036440 25 FERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP---VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~---~d~~ 77 (181)
...-.+++|+| .. +.-+.+.+|. |..++.+. ..+++++..+|+.+.+|. .|.+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 146 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAI 146 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEE
Confidence 34456999999 22 2457788887 55555443 135799999999876653 5777
No 127
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=86.09 E-value=6.2 Score=35.60 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=27.2
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++...|-+++.++|...|..++.++.||-
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 78888999999999999999999999987
No 128
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=85.47 E-value=1.3 Score=35.87 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=55.2
Q ss_pred hcCCCeEEEec------------CCCCceEEEeechhhhhhhcc---------CCCceEEecCCCCCCCCcceEeccccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD---------TNNLKYLADDFFQSIPPVCMIPLRLGY 83 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~---------~~ri~~~~gDff~~~P~~d~~~~~~~~ 83 (181)
..+...+|-+| .+|+++...+|+|+|++.-.. ..+.++++.|+.+.- ..+.+
T Consensus 76 ~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~-~~~~L------ 148 (183)
T PF04072_consen 76 HPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDS-WIDAL------ 148 (183)
T ss_dssp HTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHH-HHHHH------
T ss_pred CCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchh-hHHHH------
Confidence 35667999999 557899999999999874431 234678999998621 11111
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR 138 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~ 138 (181)
..- .+-.--..++++..++...+.+++..+|+.++
T Consensus 149 -------------~~~-------g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 149 -------------PKA-------GFDPDRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp -------------HHC-------TT-TTSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred -------------HHh-------CCCCCCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 000 00111134668889999999999999998763
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=85.27 E-value=10 Score=34.72 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=69.3
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCC---C--CcceEecc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSI---P--PVCMIPLR 80 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~---P--~~d~~~~~ 80 (181)
+...-.+|+|+| ..|+.+.+.+|. |+-++.+.. .-+++++.+|..+.. + ..|.+.++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 344557899999 455567888997 555554431 234788999987531 2 25887555
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-------HHHHHHHHHHHHhccCC--------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-------ESVKILKICREAITSKA-------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-------~~~~iL~~~~~a~~~~g-------- 145 (181)
.-+|+.-..- +--. +.+.+..+ .-.++|+.+...++|||
T Consensus 321 ~Pcs~~G~~~-----------~~p~---------------~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 321 APCSATGVIR-----------RHPD---------------IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCcccccc-----------cCcc---------------ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4332110000 0000 01112222 23479999999999999
Q ss_pred --ccCCHHHHHHHHHhC-CCeEEE
Q 036440 146 --KLSTEKELESLFVEV-HFHHYK 166 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~a-Gf~~~~ 166 (181)
.+-++++.+..+++. +|+.+.
T Consensus 375 ~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 375 ILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CChhhCHHHHHHHHHhCCCCEEec
Confidence 566677888888875 676543
No 130
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=84.09 E-value=7.6 Score=31.85 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=40.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +.+.-.+++|+| . .+..+.+.+|. |+.++.+.. -++++++.+|..+..+.
T Consensus 68 ~~~~~l--~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHh--CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 445555 456668999999 2 23456778885 666665532 35799999999875443
Q ss_pred -cceE
Q 036440 74 -VCMI 77 (181)
Q Consensus 74 -~d~~ 77 (181)
.|.+
T Consensus 146 ~fD~I 150 (215)
T TIGR00080 146 PYDRI 150 (215)
T ss_pred CCCEE
Confidence 5776
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=84.07 E-value=11 Score=34.77 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCCeEEEecCCCC-------------ceEEEeech-hhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccch
Q 036440 27 RLGSLVDVGAFPC-------------VKCTEFDQP-HVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG~~P~-------------l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~~ 84 (181)
.-.+|+|+|+-|+ .+.+.+|.- +-++.+.. -++|+++.+|..+..|. .|.++++.-+|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCT 329 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCCC
Confidence 4468999994333 367888874 44443321 24689999998764343 68886665433
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCC----------cc
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKA----------KL 147 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g----------~e 147 (181)
+....- |.+ -+...|+.++ -.+||+++...++||| ++
T Consensus 330 g~g~~~----r~p----------------------~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 330 GTGVLG----RRA----------------------ELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred Ccchhh----cCc----------------------chhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 321100 000 0111233332 2368999999999999 33
Q ss_pred CCHHHHHHHHHhC-CCeEE
Q 036440 148 STEKELESLFVEV-HFHHY 165 (181)
Q Consensus 148 Rt~~E~~~Ll~~a-Gf~~~ 165 (181)
=+++..+.+|++. +|...
T Consensus 384 Ene~~v~~~l~~~~~~~~~ 402 (445)
T PRK14904 384 ENELQIEAFLQRHPEFSAE 402 (445)
T ss_pred hHHHHHHHHHHhCCCCEEe
Confidence 3455667888876 57653
No 132
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=84.03 E-value=5.6 Score=33.78 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=24.3
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
+.-|.+++++|.++.|+++.+-..+.+
T Consensus 144 h~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 144 HLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred ccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 888999999999999999998887654
No 133
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=83.62 E-value=2.1 Score=38.13 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=59.7
Q ss_pred chhhhhhhcc--------CCCceEEecCCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccce
Q 036440 47 QPHVVANLLD--------TNNLKYLADDFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVIN 117 (181)
Q Consensus 47 lP~Vv~~a~~--------~~ri~~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (181)
=|+|++.+.. ..+|+.+-||.++-++. .|..
T Consensus 166 dp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s---------------------------------------- 205 (287)
T COG2521 166 DPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES---------------------------------------- 205 (287)
T ss_pred CCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc----------------------------------------
Confidence 3888887764 45899999999976655 3442
Q ss_pred eeeeeccCCh---H---HHHHHHHHHHHHhccCC-----------ccC---CHHHHHHHHHhCCCeEEEEEEc
Q 036440 118 MQIIIHVFGD---E---ESVKILKICREAITSKA-----------KLS---TEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 118 l~~iLHdw~D---~---~~~~iL~~~~~a~~~~g-----------~eR---t~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..|+||-+- . .+.+.-+..+.-+.+|| |-| -.++..+.|.++||..++....
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh
Confidence 3666787432 2 34567788888999998 222 2568899999999998776543
No 134
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=83.48 E-value=18 Score=32.57 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=22.9
Q ss_pred eeeeeecc-CChH-HHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHV-FGDE-ESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHd-w~D~-~~~~iL~~~~~a~~~~g 145 (181)
-++-.||. |..+ .+..+|+|++..|.|||
T Consensus 150 ScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 150 SCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp EEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 77888898 5544 45569999999999999
No 135
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=82.04 E-value=8 Score=34.39 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccCC------------------------------ccCCHHHH----HHHHHhCCCeEEEEEEcCC
Q 036440 131 VKILKICREAITSKA------------------------------KLSTEKEL----ESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g------------------------------~eRt~~E~----~~Ll~~aGf~~~~i~~~~~ 172 (181)
..+|+.++.++.|+| .-.|.||. -.+|+.+||++.+.+.+|-
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 479999999999999 33455543 2678889999999988774
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=81.21 E-value=18 Score=30.51 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred hhcCCCeEEEec------------CC-CCceEEEeech-hhhhhhc-------cCCCceEEecCCCCC
Q 036440 24 IFERLGSLVDVG------------AF-PCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQS 70 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~-P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~ 70 (181)
...+.++++|+| +. |..+.+.+|.. +.++.+. ..++|+++.||..+.
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence 345778999999 33 46788999984 4444442 367999999999864
No 137
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=80.42 E-value=3.8 Score=36.08 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=28.4
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+.++||=.++.+.-.+||+..+.+|+|||
T Consensus 207 fCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 207 FCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999
No 138
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=80.25 E-value=14 Score=31.48 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=34.7
Q ss_pred CCCeEEEec------------CCCC---ceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceE
Q 036440 27 RLGSLVDVG------------AFPC---VKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~---l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
...+++|+| .+|. ...+.+|+ |..++.+.. .+++++..+|..+ +++. .|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I 155 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAI 155 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEE
Confidence 346799999 4554 35789998 556665543 4678999999875 3333 4666
No 139
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=79.23 E-value=16 Score=30.79 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=62.0
Q ss_pred EEEec------------CCCCceEEEeec-hhhhhhh-------ccCCCceEEecCCCCCCCCc---ceEeccccchhhh
Q 036440 31 LVDVG------------AFPCVKCTEFDQ-PHVVANL-------LDTNNLKYLADDFFQSIPPV---CMIPLRLGYSHIK 87 (181)
Q Consensus 31 lvDvG------------~~P~l~~~~~Dl-P~Vv~~a-------~~~~ri~~~~gDff~~~P~~---d~~~~~~~~~~~~ 87 (181)
|.||| ....-+++..|+ |.-.+.+ .+.++|++.-+|=|+.++.. |++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~i---------- 70 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTI---------- 70 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EE----------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEE----------
Confidence 57888 566668899997 3333333 35889999999999988763 444
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----ccCCHHHHHHHHHhCCC
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----KLSTEKELESLFVEVHF 162 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----~eRt~~E~~~Ll~~aGf 162 (181)
.+. --+-+--.+||.+..+.+++.. ......+++++|.+.||
T Consensus 71 -----------------------------vIA----GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf 117 (205)
T PF04816_consen 71 -----------------------------VIA----GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGF 117 (205)
T ss_dssp -----------------------------EEE----EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTE
T ss_pred -----------------------------EEe----cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCC
Confidence 222 3356666778877766554433 45678899999999999
Q ss_pred eEEEEEEc
Q 036440 163 HHYKITPL 170 (181)
Q Consensus 163 ~~~~i~~~ 170 (181)
.+..=..+
T Consensus 118 ~I~~E~lv 125 (205)
T PF04816_consen 118 EIIDEDLV 125 (205)
T ss_dssp EEEEEEEE
T ss_pred EEEEeEEE
Confidence 98765443
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=77.98 E-value=10 Score=34.96 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=29.8
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS 70 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~ 70 (181)
..-.+++|+| +--..+.+.+|. |..++.+.. -++++++.+|+.+.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 3446899999 111246788887 455554432 24799999998754
No 141
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=77.66 E-value=12 Score=30.31 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=33.9
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC---cceE
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP---VCMI 77 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~---~d~~ 77 (181)
......+++|+| ... +.+.+|. |..++.+.. -.+++++.+|+++.+|. .|.+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEE
Confidence 345567999999 212 4666675 555554431 24699999999876653 5777
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=76.58 E-value=20 Score=32.79 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhccCC----------ccCCHHHHHHHHHhC-CCe
Q 036440 131 VKILKICREAITSKA----------KLSTEKELESLFVEV-HFH 163 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g----------~eRt~~E~~~Ll~~a-Gf~ 163 (181)
.+||+++...++||| .+=+++..+.++++. +|.
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 579999999999999 556777888888876 464
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=75.52 E-value=22 Score=32.92 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=68.1
Q ss_pred hhcCCCeEEEecCCC-------------CceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CCC-cceEec
Q 036440 24 IFERLGSLVDVGAFP-------------CVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IPP-VCMIPL 79 (181)
Q Consensus 24 d~~~~~~lvDvG~~P-------------~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P~-~d~~~~ 79 (181)
+...-.+|+|+|+-| .-+.+.+|+ ++-++.+.. -++++++.+|..+- .+. .|.+++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 344557899999444 456788887 344443321 24588999997641 122 588866
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH-------HHHHHHHHHHhccCC-------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES-------VKILKICREAITSKA------- 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~-------~~iL~~~~~a~~~~g------- 145 (181)
+.-+|+.-.. | -| ..+...|+.++. .+||.++...++|||
T Consensus 314 DaPCsg~G~~-----~-------~~--------------p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 314 DAPCTSLGTA-----R-------NH--------------PEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCCCccc-----c-------CC--------------hHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 6654322110 0 00 011122333222 578999999999999
Q ss_pred ---ccCCHHHHHHHHHh-CCCeEEEE
Q 036440 146 ---KLSTEKELESLFVE-VHFHHYKI 167 (181)
Q Consensus 146 ---~eRt~~E~~~Ll~~-aGf~~~~i 167 (181)
.+-+++..+..|++ -+|....+
T Consensus 368 s~~~eEne~vv~~fl~~~~~~~~~~~ 393 (431)
T PRK14903 368 TVTKEENTEVVKRFVYEQKDAEVIDI 393 (431)
T ss_pred CCChhhCHHHHHHHHHhCCCcEEecc
Confidence 55567777777765 36765443
No 144
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=75.35 E-value=7.1 Score=32.86 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=46.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc---------------cCCCceEEecC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL---------------DTNNLKYLADD 66 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~---------------~~~ri~~~~gD 66 (181)
..+++.+ +...-.+.+|+| .++.-+++.+++ |...+.+. ...++++..||
T Consensus 32 ~~il~~~--~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDEL--NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHT--T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHh--CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 4456666 566778999999 455556877776 33332221 15688999999
Q ss_pred CCCC------CCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 67 FFQS------IPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 67 ff~~------~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
|++. +-.+|++ ++.+.+ |+++-..+| +.....
T Consensus 110 fl~~~~~~~~~s~AdvV---------------------------------------f~Nn~~--F~~~l~~~L-~~~~~~ 147 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVV---------------------------------------FVNNTC--FDPDLNLAL-AELLLE 147 (205)
T ss_dssp TTTHHHHHHHGHC-SEE---------------------------------------EE--TT--T-HHHHHHH-HHHHTT
T ss_pred ccccHhHhhhhcCCCEE---------------------------------------EEeccc--cCHHHHHHH-HHHHhc
Confidence 9863 1237777 666554 666655555 666677
Q ss_pred hccCC
Q 036440 141 ITSKA 145 (181)
Q Consensus 141 ~~~~g 145 (181)
|++|.
T Consensus 148 lk~G~ 152 (205)
T PF08123_consen 148 LKPGA 152 (205)
T ss_dssp S-TT-
T ss_pred CCCCC
Confidence 88887
No 145
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=74.86 E-value=25 Score=32.38 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=66.0
Q ss_pred hcCCCeEEEecCCC-------------CceEEEeec-hhhhhhhcc------CCCceEEecCCCCCC---C----CcceE
Q 036440 25 FERLGSLVDVGAFP-------------CVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSI---P----PVCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG~~P-------------~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~---P----~~d~~ 77 (181)
...-.+|+|+|+-| ..+.+.+|. ++-++.+.. -.+|+++.+|..+.. + ..|.+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 34457899999333 346777887 444443321 246899999986421 1 25888
Q ss_pred eccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCC-----
Q 036440 78 PLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKA----- 145 (181)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g----- 145 (181)
+++.=.|+. |..+.- ..+.+.++.++ -.+||+++...++|||
T Consensus 330 l~DaPCSg~--------------G~~~r~------------p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 330 LLDAPCSGL--------------GTLHRH------------PDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred EEeCCCCcc--------------cccccC------------cchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 555432211 110000 00111223333 3589999999999999
Q ss_pred -----ccCCHHHHHHHHHhC-CCeEE
Q 036440 146 -----KLSTEKELESLFVEV-HFHHY 165 (181)
Q Consensus 146 -----~eRt~~E~~~Ll~~a-Gf~~~ 165 (181)
++-.++.....+++. +|+..
T Consensus 384 tcsi~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 384 TCTLHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred eCCCChhhHHHHHHHHHHhCCCcEec
Confidence 334466677888876 68754
No 146
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=74.55 E-value=31 Score=32.15 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.0
Q ss_pred eeeeeecc-CChHH-HHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHV-FGDEE-SVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHd-w~D~~-~~~iL~~~~~a~~~~g 145 (181)
-.+.++|. |.+++ +...|+|+...++|||
T Consensus 201 ScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 201 SCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred eeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 77888998 66655 5567999999999999
No 147
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=74.42 E-value=6.4 Score=28.23 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=35.5
Q ss_pred eEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC---CCC--cceEecccc
Q 036440 30 SLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS---IPP--VCMIPLRLG 82 (181)
Q Consensus 30 ~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~---~P~--~d~~~~~~~ 82 (181)
+|+|+| .+ ..+.+.+|+ |..++.++ ..+|++++.+|+++. .+. .|++..+-=
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred EEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 688888 44 678899998 55655553 257899999999853 333 688844444
No 148
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=74.40 E-value=7.8 Score=35.27 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=18.8
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
|.-+.+.|++.++.|||+.+.+.
T Consensus 308 R~e~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 308 RHERLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred cccchhHHHHHHHhcCCeecCCC
Confidence 34477899999999999987664
No 149
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=73.99 E-value=17 Score=31.13 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=19.6
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEE--EcCCCCe
Q 036440 146 KLSTEKELESLFVEVHFHHYKIT--PLFGLPS 175 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~--~~~~~~~ 175 (181)
..+-.++....+.+.||....+. |+.|..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~s~i~G~~g 225 (228)
T TIGR00478 194 IALALHKVIDKGESPDFQEKKIIFSLTKGKRG 225 (228)
T ss_pred HHHHHHHHHHHHHcCCCeEeeEEECCCCCCCC
Confidence 33445566667778899988876 4445444
No 150
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=72.85 E-value=14 Score=31.94 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=69.4
Q ss_pred CCeEEEec-------------CCCC-ceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC--CCC-cceEecccc
Q 036440 28 LGSLVDVG-------------AFPC-VKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS--IPP-VCMIPLRLG 82 (181)
Q Consensus 28 ~~~lvDvG-------------~~P~-l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~--~P~-~d~~~~~~~ 82 (181)
..+|||+| .||. +++ .|. |..|+.|. .++.|+|+..|.+++ .|. -|++ |+-
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~G--vDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv-lDK- 143 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTG--VDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV-LDK- 143 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccc--cccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE-eec-
Confidence 34899999 5666 444 454 23333332 367799999999974 343 4666 111
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeec-cCChHHHHHHHHHHHHHhccCC------ccCCHHHHHH
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIH-VFGDEESVKILKICREAITSKA------KLSTEKELES 155 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLH-dw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~ 155 (181)
|.+ =..-|| |-.+++..--|-.+...+.|+| --.|..|+.+
T Consensus 144 ------------------GT~--------------DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~ 191 (227)
T KOG1271|consen 144 ------------------GTL--------------DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVE 191 (227)
T ss_pred ------------------Cce--------------eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHH
Confidence 111 111233 3333333344666677788998 7789999999
Q ss_pred HHHhCCCeEEEEEEcCC
Q 036440 156 LFVEVHFHHYKITPLFG 172 (181)
Q Consensus 156 Ll~~aGf~~~~i~~~~~ 172 (181)
-++.-||.....+|.+.
T Consensus 192 ~f~~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 192 EFENFNFEYLSTVPTPT 208 (227)
T ss_pred HHhcCCeEEEEeeccce
Confidence 99999999998887763
No 151
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=71.80 E-value=12 Score=32.11 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=65.1
Q ss_pred CCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhc----------cCCCceEEecCCCC---CCCC--cceEe
Q 036440 27 RLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQ---SIPP--VCMIP 78 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~---~~P~--~d~~~ 78 (181)
+.++||=+| +||. .+.+++|+ |.|++.++ ..+|++++.+|-++ ..+. .|++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI- 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI- 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE-
Confidence 567777777 8885 47899998 67777664 25799999999763 3333 4666
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-------HHHHHHHHHHHHhccCC------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-------ESVKILKICREAITSKA------ 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-------~~~~iL~~~~~a~~~~g------ 145 (181)
+.|..|. -..+.++.|++.++|+|
T Consensus 155 -------------------------------------------i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 -------------------------------------------IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -------------------------------------------EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------------------------------EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 2232331 14678999999999999
Q ss_pred -----ccCCHHHHHHHHHhCCCeEEEE-EEcCCC
Q 036440 146 -----KLSTEKELESLFVEVHFHHYKI-TPLFGL 173 (181)
Q Consensus 146 -----~eRt~~E~~~Ll~~aGf~~~~i-~~~~~~ 173 (181)
.......+.+-+.++....... .++|+.
T Consensus 192 ~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~ 225 (246)
T PF01564_consen 192 GSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSY 225 (246)
T ss_dssp EETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTS
T ss_pred cCcccchHHHHHHHHHHHHhCCceEEEEEEcCee
Confidence 2233344555666676643222 355553
No 152
>PLN02476 O-methyltransferase
Probab=71.72 E-value=27 Score=30.94 Aligned_cols=49 Identities=6% Similarity=-0.040 Sum_probs=34.8
Q ss_pred hhcCCCeEEEec------------CC-CCceEEEeechh-hhhhh-------ccCCCceEEecCCCCCCC
Q 036440 24 IFERLGSLVDVG------------AF-PCVKCTEFDQPH-VVANL-------LDTNNLKYLADDFFQSIP 72 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~-P~l~~~~~DlP~-Vv~~a-------~~~~ri~~~~gDff~~~P 72 (181)
...+.+++|++| +- |+-+.+-+|... ..+.+ +..++|+++.||..+.+|
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK 184 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 355789999999 33 456778888854 34433 346899999999987544
No 153
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=70.87 E-value=2 Score=33.49 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=32.4
Q ss_pred ccCChHHHHHHHHHHHHHhccCC----------------------------ccCCHHHHHHHHHh--CCCeEEEEEEcC
Q 036440 123 HVFGDEESVKILKICREAITSKA----------------------------KLSTEKELESLFVE--VHFHHYKITPLF 171 (181)
Q Consensus 123 Hdw~D~~~~~iL~~~~~a~~~~g----------------------------~eRt~~E~~~Ll~~--aGf~~~~i~~~~ 171 (181)
=+|+|+.-.+.+++++..+.||| -+-..++++..|.+ .||..++....+
T Consensus 16 Ln~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 16 LNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTSTTT---EEEEE---
T ss_pred ecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHhcccceEEEEEcccC
Confidence 37999999999999999999999 11223357777776 699988765443
No 154
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=70.66 E-value=45 Score=30.11 Aligned_cols=137 Identities=13% Similarity=-0.012 Sum_probs=74.1
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhc--------cCCCceEEe----cCCCCCC--CC--cceEe
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL--------DTNNLKYLA----DDFFQSI--PP--VCMIP 78 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~--------~~~ri~~~~----gDff~~~--P~--~d~~~ 78 (181)
-.++|||| +.|+.+.+..|+ |..++.|. ..+||++.. .+.|+.+ |. .|.+.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 36899999 678889999998 44454442 345777753 3555543 22 46653
Q ss_pred ccccchhh-------hHHhhh-hhhhhc-----CCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 79 LRLGYSHI-------KIMIAF-FIRLVV-----GRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 79 ~~~~~~~~-------~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
.+==|.-. ..+..- .-|-.+ --|+...-.|..-+.-.|+++ ++ +++..+.+++.+-..-=|
T Consensus 195 cNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~-mi-----~eS~~~~~~~gwftsmv~ 268 (321)
T PRK11727 195 CNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR-MI-----EESKAFAKQVLWFTSLVS 268 (321)
T ss_pred eCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH-hh-----HHHHHHHhhCcEEEEEee
Confidence 33222100 000000 000000 002233444544444333333 22 344556665543333334
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
|..+.+.+...|++.|...++++++
T Consensus 269 kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 269 KKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred ccCCHHHHHHHHHHcCCceEEEEEE
Confidence 7779999999999999999988876
No 155
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=68.19 E-value=12 Score=29.14 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccCCccC---CHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 132 KILKICREAITSKAKLS---TEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 132 ~iL~~~~~a~~~~g~eR---t~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
.+++.++..+.++|..- +..-.++-|.++||.+.+....++....+-+.
T Consensus 71 e~~~~l~~~~~~~~~l~Tys~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYSSAGAVRRALQQAGFEVEKVPGFGRKREMLRAV 122 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES--BHHHHHHHHHCTEEEEEEE-STTSSEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeechHHHHHHHHHcCCEEEEcCCCCCcchheEEE
Confidence 48899999999998222 24578999999999988877777776666554
No 156
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=67.26 E-value=73 Score=28.29 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=75.8
Q ss_pred HHHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeechh-hhhhh-------ccCCCceEEecCCCCCC-C
Q 036440 15 SLALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQPH-VVANL-------LDTNNLKYLADDFFQSI-P 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~DlP~-Vv~~a-------~~~~ri~~~~gDff~~~-P 72 (181)
..++... +.+.-..|+|.| -.|.-+.+.+|.-+ -.+.| ...+++++.-+|.-+.. +
T Consensus 84 ~~I~~~~--gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARL--GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHc--CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 4566666 777888999999 45777888888743 33333 24778999999998753 3
Q ss_pred C-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----cc
Q 036440 73 P-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----KL 147 (181)
Q Consensus 73 ~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----~e 147 (181)
. .|++ +| |-+|. -+.|.++++++.||| ..
T Consensus 162 ~~vDav---------------------------------------~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 162 EDVDAV---------------------------------------FL-----DLPDP--WNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cccCEE---------------------------------------EE-----cCCCh--HHHHHHHHHHhCCCcEEEEEc
Confidence 2 6776 22 33333 347999999999999 67
Q ss_pred CCHHHHHHHH---HhCCCeEEEEEEc
Q 036440 148 STEKELESLF---VEVHFHHYKITPL 170 (181)
Q Consensus 148 Rt~~E~~~Ll---~~aGf~~~~i~~~ 170 (181)
.+.+|.+... ++.||.+...+.+
T Consensus 196 P~veQv~kt~~~l~~~g~~~ie~~E~ 221 (256)
T COG2519 196 PTVEQVEKTVEALRERGFVDIEAVET 221 (256)
T ss_pred CCHHHHHHHHHHHHhcCccchhhhee
Confidence 7777777654 4579988766554
No 157
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=67.05 E-value=17 Score=32.42 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhcc----CCCceEEecCCCC--C-CC-
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQ--S-IP- 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~--~-~P- 72 (181)
..+++.+ .-..-..+||++ ++| +.+.+.+|. |..++.+.. .+|++++.+||-+ . ++
T Consensus 9 ~Evl~~L--~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 9 DEVVDAL--AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHhh--CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 5666666 344556999998 665 789999998 666665542 3699999999974 1 22
Q ss_pred ---CcceEeccccchhh-----hHHhhhh-----h-hhhcCCCccchhhhhhcccccceeeeeeccCChHHHH-HHHHHH
Q 036440 73 ---PVCMIPLRLGYSHI-----KIMIAFF-----I-RLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESV-KILKIC 137 (181)
Q Consensus 73 ---~~d~~~~~~~~~~~-----~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~-~iL~~~ 137 (181)
..|.+++++|.|-. .-=|+|. + |..+..+ .--..|+|.... --|..|+.+++++..- +|=+.+
T Consensus 87 ~~~~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDMRmd~~~~-~sA~~~ln~~~~-~~L~~i~~~yGee~~a~~iA~~I 164 (296)
T PRK00050 87 GLGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQG-LTAAEVVNTYSE-EELARIFKEYGEERFARRIARAI 164 (296)
T ss_pred CCCccCEEEECCCccccccCCCcCCcccCCCCCCcCCcCCCCC-CCHHHHHhhCCH-HHHHHHHHHhcCcchHHHHHHHH
Confidence 47999999998722 1112221 1 1111111 112333332111 1246677777776543 444444
Q ss_pred HHHhccCCccCCHHHHHHHHHhC
Q 036440 138 REAITSKAKLSTEKELESLFVEV 160 (181)
Q Consensus 138 ~~a~~~~g~eRt~~E~~~Ll~~a 160 (181)
.++ ...++-.|..|+.++++++
T Consensus 165 v~~-R~~~~~~tt~~L~~~i~~~ 186 (296)
T PRK00050 165 VEA-RPKKPITTTGELAEIIKSA 186 (296)
T ss_pred HHH-hccCCCCCHHHHHHHHHHH
Confidence 444 3446778889999999876
No 158
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=65.05 E-value=63 Score=28.09 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhccCC---------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEE
Q 036440 130 SVKILKICREAITSKA---------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEV 179 (181)
Q Consensus 130 ~~~iL~~~~~a~~~~g---------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~ 179 (181)
-...|+.....++++| |--+.+++.+.++.-||+..+-.......-+.|.
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F 195 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEF 195 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEE
Confidence 3457888888899999 6668899999999999998875443333344443
No 159
>PRK04148 hypothetical protein; Provisional
Probab=64.03 E-value=12 Score=29.83 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCCCCCC----cceE
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQSIPP----VCMI 77 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~~~P~----~d~~ 77 (181)
.-+++.++ . .+..+++||| +--+...+..|. |+.++.+. ...+.++.+|.|++-+. +|++
T Consensus 6 ~~l~~~~~-~-~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-~~~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 6 EFIAENYE-K-GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-KLGLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHHhcc-c-ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-HhCCeEEECcCCCCCHHHHhcCCEE
Confidence 44555553 2 2346899999 223557899997 55666554 34679999999986543 5766
No 160
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=62.71 E-value=24 Score=31.91 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=44.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC-------
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ------- 69 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~------- 69 (181)
..+++.. .-..-+..||.= ++|..+.+.+|. |..++.+.. .+|+.++.+||-+
T Consensus 10 ~Evl~~L--~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 10 KEVLEAL--NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHH--T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHhh--CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 5666776 456667999963 899999999999 667765542 6899999999864
Q ss_pred --CCCCcceEeccccch
Q 036440 70 --SIPPVCMIPLRLGYS 84 (181)
Q Consensus 70 --~~P~~d~~~~~~~~~ 84 (181)
.++..|.+++++|.|
T Consensus 88 ~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 88 LNGINKVDGILFDLGVS 104 (310)
T ss_dssp TTTTS-EEEEEEE-S--
T ss_pred ccCCCccCEEEEccccC
Confidence 123479999999987
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=62.70 E-value=46 Score=26.66 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=53.3
Q ss_pred hcCCCeEEEec-----------CC-CCceEEEeechhhhhhhc---------cCCCceEEecCCCCCC------C-Ccce
Q 036440 25 FERLGSLVDVG-----------AF-PCVKCTEFDQPHVVANLL---------DTNNLKYLADDFFQSI------P-PVCM 76 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~-P~l~~~~~DlP~Vv~~a~---------~~~ri~~~~gDff~~~------P-~~d~ 76 (181)
..+-.+|+++| +. +..+.++=|.|++++... ..++++..+.||-++. + ..|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34457999999 34 778899999999776443 2478888888886532 1 1466
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------ccC
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------KLS 148 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------~eR 148 (181)
+ +..-++++ ++....+++.+...+.+++ |..
T Consensus 123 I---------------------------------------lasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 123 I---------------------------------------LASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRRRK 161 (173)
T ss_dssp E---------------------------------------EEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred E---------------------------------------EEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence 6 77888864 6777788888899998888 333
Q ss_pred CHHHHHHHHHh
Q 036440 149 TEKELESLFVE 159 (181)
Q Consensus 149 t~~E~~~Ll~~ 159 (181)
+.+++-+.+++
T Consensus 162 ~~~~F~~~~~k 172 (173)
T PF10294_consen 162 SEQEFFDRLKK 172 (173)
T ss_dssp GGCHHHHHH--
T ss_pred HHHHHHHHhhh
Confidence 44555555543
No 162
>PRK00536 speE spermidine synthase; Provisional
Probab=62.34 E-value=58 Score=28.58 Aligned_cols=48 Identities=8% Similarity=0.183 Sum_probs=32.5
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhc----------cCCCceEEecCCCCCCC--CcceE
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQSIP--PVCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~~~P--~~d~~ 77 (181)
..++||=+| +||. +++..|+ +.|++.++ ..+|++.+. ++...+ .-|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVI 143 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLI 143 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEE
Confidence 557777777 9997 9999998 45776554 378888886 343322 25666
No 163
>PLN02823 spermine synthase
Probab=61.47 E-value=20 Score=32.42 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=36.4
Q ss_pred CCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhcc----------CCCceEEecCCCCCC---CC-cceE
Q 036440 27 RLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQSI---PP-VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~~---P~-~d~~ 77 (181)
+.++++-+| ++|. .+.+++|+ |.|++.++. .+|++++.+|.++-+ +. .|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 557899998 6654 46899998 677776641 579999999887533 22 5666
No 164
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=60.85 E-value=24 Score=27.72 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeech-hhhhhhc----cCCCceEEecCCCCC-CCC--cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQP-HVVANLL----DTNNLKYLADDFFQS-IPP--VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~----~~~ri~~~~gDff~~-~P~--~d 75 (181)
..+++.. ++..-.+++|+| +. ..+.+.+|.- ..++.+. ..++++++.+|+.+. .+. .|
T Consensus 3 ~~i~~~~--~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAA--NLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhc--CCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 5667777 666777999999 33 4577888875 4444332 246899999999874 333 36
Q ss_pred eEeccccc
Q 036440 76 MIPLRLGY 83 (181)
Q Consensus 76 ~~~~~~~~ 83 (181)
.+..++-|
T Consensus 80 ~vi~n~Py 87 (169)
T smart00650 80 KVVGNLPY 87 (169)
T ss_pred EEEECCCc
Confidence 65444443
No 165
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=60.48 E-value=43 Score=33.01 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=66.0
Q ss_pred CCCeEEEec-----------CCCCceEEEeech-hhhhhhc-------cC-CCceEEecCCCCCC---C-CcceEecccc
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQP-HVVANLL-------DT-NNLKYLADDFFQSI---P-PVCMIPLRLG 82 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~-------~~-~ri~~~~gDff~~~---P-~~d~~~~~~~ 82 (181)
.-++|||+| +....+.+.+|.- ..++.+. .. ++++++.+|.|+.+ + ..|++.++-=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 457999999 2223358889984 4444332 13 58999999988633 2 2577733322
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-hHHHHHHHHHHHHHhccCC------ccCCHHHHHH
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-DEESVKILKICREAITSKA------KLSTEKELES 155 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~ 155 (181)
| | ..++. +.. .|. ...-.++++.+...++||| -.+....-.+
T Consensus 618 ~---------f---~~~~~----------------~~~---~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~ 666 (702)
T PRK11783 618 T---------F---SNSKR----------------MED---SFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEE 666 (702)
T ss_pred C---------C---CCCCc----------------cch---hhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHH
Confidence 1 0 00000 000 011 1223467888889999999 3333444488
Q ss_pred HHHhCCCeEEEEEE
Q 036440 156 LFVEVHFHHYKITP 169 (181)
Q Consensus 156 Ll~~aGf~~~~i~~ 169 (181)
.+.++|++...+..
T Consensus 667 ~~~~~g~~~~~i~~ 680 (702)
T PRK11783 667 GLAKLGLKAEEITA 680 (702)
T ss_pred HHHhCCCeEEEEec
Confidence 88999998877763
No 166
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=60.39 E-value=96 Score=28.31 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=35.0
Q ss_pred HHHHHHHHhccCC---------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEE
Q 036440 133 ILKICREAITSKA---------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEV 179 (181)
Q Consensus 133 iL~~~~~a~~~~g---------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~ 179 (181)
.++.....+.+|| |-.+..++.+-|..-||.+.+.--......++|.
T Consensus 246 f~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfef 301 (325)
T KOG3045|consen 246 FIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEF 301 (325)
T ss_pred HHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEE
Confidence 5666777778999 7778889999999999998776544444445544
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=59.49 E-value=29 Score=29.53 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=44.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeech-hhhhhhcc----CCCceEEecCCCC-CCCCcceE
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQP-HVVANLLD----TNNLKYLADDFFQ-SIPPVCMI 77 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~~----~~ri~~~~gDff~-~~P~~d~~ 77 (181)
..+++.. +...-.+++||| +. ..+.+.+|.- ..++.+.. .++++++.+|+.+ ++|..|.+
T Consensus 19 ~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~V 95 (258)
T PRK14896 19 DRIVEYA--EDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKV 95 (258)
T ss_pred HHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEE
Confidence 5556665 455668999999 22 3467788874 34443322 4689999999987 45656777
Q ss_pred eccccch
Q 036440 78 PLRLGYS 84 (181)
Q Consensus 78 ~~~~~~~ 84 (181)
-.++-|+
T Consensus 96 v~NlPy~ 102 (258)
T PRK14896 96 VSNLPYQ 102 (258)
T ss_pred EEcCCcc
Confidence 5666554
No 168
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=59.32 E-value=17 Score=32.16 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=36.9
Q ss_pred CCCeEEEec-----------CCCCc-eEEEeec-hhhhhhhcc----------CCCceEEecCCCC---CCCC-cceE
Q 036440 27 RLGSLVDVG-----------AFPCV-KCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQ---SIPP-VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l-~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~---~~P~-~d~~ 77 (181)
..++||=|| +|+.+ +.++.|+ |.|++.++. .+|++.+-+|-++ ..+. .|+|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 445777777 77755 7899998 778887752 4899999999775 3343 6777
No 169
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=57.16 E-value=36 Score=29.00 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred CCCCceEEEeech-hhhhhhccCCCceEEecCCCCCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccc
Q 036440 36 AFPCVKCTEFDQP-HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKR 114 (181)
Q Consensus 36 ~~P~l~~~~~DlP-~Vv~~a~~~~ri~~~~gDff~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (181)
+.|+.+.+..|.. ...+.+...+-+.-...+ .+.+..+|++
T Consensus 8 ~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlv------------------------------------- 49 (258)
T PF02153_consen 8 AGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLV------------------------------------- 49 (258)
T ss_dssp TTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEE-------------------------------------
T ss_pred CCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEE-------------------------------------
Confidence 3567888889974 455555333333333333 3334556777
Q ss_pred cceeeeeeccCChHHHHHHHHHHHHHhccCC--------ccCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 115 VINMQIIIHVFGDEESVKILKICREAITSKA--------KLSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 115 ~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
++. -+-+...++|+.+...+++++ |..-.+.+++.+. .|...+..+|+.|.
T Consensus 50 --vla-----vP~~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 50 --VLA-----VPVSAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGP 108 (258)
T ss_dssp --EE------S-HHHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCST
T ss_pred --EEc-----CCHHHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCC
Confidence 443 266778899999999888887 7777778887776 78899999999987
No 170
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=55.71 E-value=64 Score=28.24 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC
Q 036440 28 LGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ 69 (181)
Q Consensus 28 ~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~ 69 (181)
-.+++|+| +-+..+.+.+|. |+.++.+.. -++++++.+|+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~ 232 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQ 232 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHH
Confidence 47899999 445667888997 566655532 2579999999865
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=54.80 E-value=36 Score=28.54 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=39.4
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeech-hhhhhh-------ccCCCceEEecCCCCCCC---------Cc
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQP-HVVANL-------LDTNNLKYLADDFFQSIP---------PV 74 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~DlP-~Vv~~a-------~~~~ri~~~~gDff~~~P---------~~ 74 (181)
..+.+++|.|| +.| +.+.+-+|.- .-.+.+ ...+||+++.||..+.+| ..
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45889999999 555 5889999984 344433 346899999999986443 24
Q ss_pred ceEeccccc
Q 036440 75 CMIPLRLGY 83 (181)
Q Consensus 75 d~~~~~~~~ 83 (181)
|.+-++.-+
T Consensus 123 D~VFiDa~K 131 (205)
T PF01596_consen 123 DFVFIDADK 131 (205)
T ss_dssp EEEEEESTG
T ss_pred eEEEEcccc
Confidence 777444443
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=54.00 E-value=24 Score=30.30 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQ 69 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~ 69 (181)
..+++.. +...-.+|+|+| +.+ +.+.+|. |..++.+.. .++++++.+|+.+
T Consensus 32 ~~i~~~l--~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~ 98 (272)
T PRK00274 32 DKIVDAA--GPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK 98 (272)
T ss_pred HHHHHhc--CCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence 5556666 566667999999 555 4555665 455554432 3689999999886
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=53.86 E-value=80 Score=26.96 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=60.1
Q ss_pred hHHHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhh-hhccCCCceEEecCCCCC--------
Q 036440 14 ASLALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVA-NLLDTNNLKYLADDFFQS-------- 70 (181)
Q Consensus 14 ~~~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~-~a~~~~ri~~~~gDff~~-------- 70 (181)
|.+++... |++.-.-|+.+| ..+.-..+..+. |+-+. ....-+...+++||.|+-
T Consensus 37 A~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 37 ARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 46777777 788888999999 233333333332 44333 333456667888988841
Q ss_pred CCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 71 IPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 71 ~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
-|..|.+ +-.-=+-+++-..+++||+....-++.||
T Consensus 115 gq~~D~v---------------------------------------iS~lPll~~P~~~~iaile~~~~rl~~gg 150 (194)
T COG3963 115 GQFFDSV---------------------------------------ISGLPLLNFPMHRRIAILESLLYRLPAGG 150 (194)
T ss_pred CCeeeeE---------------------------------------EeccccccCcHHHHHHHHHHHHHhcCCCC
Confidence 1224555 33333447889999999999999999998
No 174
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=52.60 E-value=49 Score=30.75 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHhccCC-----------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 127 DEESVKILKICREAITSKA-----------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 127 D~~~~~iL~~~~~a~~~~g-----------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
-+....-|+.+...++||| -|-|.+++.++...-||++.+-.
T Consensus 272 a~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 272 AHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred hHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 3445577888888888888 68899999999999999987754
No 175
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=50.54 E-value=26 Score=27.07 Aligned_cols=27 Identities=15% Similarity=-0.086 Sum_probs=24.1
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
.-.|.++.+.|+++|||++.+.|.-+.
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 778999999999999999999986654
No 176
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=49.92 E-value=1.3e+02 Score=26.59 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=37.7
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC----------------------ccC----------CHHHHHHHHHhCCCeE
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA----------------------KLS----------TEKELESLFVEVHFHH 164 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------------~eR----------t~~E~~~Ll~~aGf~~ 164 (181)
.-.-+|+ +.++.++.|++++..+.||| -++ =-.+..++|++|-|..
T Consensus 150 V~TlvLC--Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~ 227 (252)
T KOG4300|consen 150 VCTLVLC--SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSI 227 (252)
T ss_pred EEEEEEe--ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhccccc
Confidence 4444454 45677889999999999999 111 1125567899999999
Q ss_pred EEEEEcCC
Q 036440 165 YKITPLFG 172 (181)
Q Consensus 165 ~~i~~~~~ 172 (181)
.+......
T Consensus 228 ~~~kr~~~ 235 (252)
T KOG4300|consen 228 DSCKRFNF 235 (252)
T ss_pred chhhcccC
Confidence 88876543
No 177
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=49.11 E-value=23 Score=31.05 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 126 GDEESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 126 ~D~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
+-++-.+.|+|+...++||| -.-+++..++-|+++||.+.....
T Consensus 174 d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 174 DLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 45667789999999999999 566899999999999999988763
No 178
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=49.05 E-value=42 Score=30.55 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=30.3
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ 69 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~ 69 (181)
...-.+++|+| +--.-+.+.+|. |+.++.+.. -++++++.+|+.+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET 351 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence 34557899999 111236788887 666665542 3589999999865
No 179
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=48.10 E-value=50 Score=29.70 Aligned_cols=141 Identities=20% Similarity=0.251 Sum_probs=78.7
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC---CC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ---SI-- 71 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~---~~-- 71 (181)
..+++.. ....-+.+||.= +.|..+.+.+|. |..++.+.. .+|++++.+||-+ .+
T Consensus 10 ~Evl~~L--~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 10 DEVVEGL--NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHhc--CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 4566666 344556899974 667788999998 566655532 4699999999974 12
Q ss_pred ---CCcceEeccccchhhh-----HHhhhh-----h-hhhcCCCccchhhhhhcccccceeeeeeccCChHH-HHHHHHH
Q 036440 72 ---PPVCMIPLRLGYSHIK-----IMIAFF-----I-RLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-SVKILKI 136 (181)
Q Consensus 72 ---P~~d~~~~~~~~~~~~-----~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-~~~iL~~ 136 (181)
...|.+++++|.|--- -=|+|. + |..++ .+.--..|.|....- =|..|+-+++++. +.+|=+.
T Consensus 88 ~~~~~vDgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~-~~~tA~~~ln~~~e~-~L~~i~~~yGEe~~a~~IA~~ 165 (305)
T TIGR00006 88 LLVTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQS-QKLSAAEILNTYSEE-DLERILKKYGEEKFSKRIARA 165 (305)
T ss_pred cCCCcccEEEEeccCCHhhcCCCCCCCccCCCCCcccccCCC-CCCCHHHHHhhCCHH-HHHHHHHHhcCcchHHHHHHH
Confidence 2379999999988221 112321 0 11111 111122233311111 1234444444443 2344444
Q ss_pred HHHHhccCCccCCHHHHHHHHHhC
Q 036440 137 CREAITSKAKLSTEKELESLFVEV 160 (181)
Q Consensus 137 ~~~a~~~~g~eRt~~E~~~Ll~~a 160 (181)
+.++-. .++-.|..|+.++.+++
T Consensus 166 Iv~~R~-~~~i~tt~~L~~ii~~~ 188 (305)
T TIGR00006 166 IVERRK-KKPIQTTKELAELISKA 188 (305)
T ss_pred HHHHHh-cCCCCCHHHHHHHHHHH
Confidence 444433 34666888999998886
No 180
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=48.09 E-value=74 Score=26.76 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=34.9
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhc----cCCCceEEecCCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL----DTNNLKYLADDFFQS 70 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~----~~~ri~~~~gDff~~ 70 (181)
..+++.. +.....+++|+| +++. .+.+|.- ..++.+. ..++++++.+|+.+.
T Consensus 19 ~~i~~~~--~~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 19 QKIVEAA--NVLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred HHHHHhc--CCCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 5566666 567778999999 5554 5556653 3333332 247899999999863
No 181
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=47.30 E-value=45 Score=25.45 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=28.3
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCCC---CeEEEEEC
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFGL---PSLIEVYP 181 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~~---~~viE~~~ 181 (181)
..-+++++.+.++++||++.+...+... -.++|++|
T Consensus 59 ~~~~e~~l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 59 YPHREEDLRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred EEeCHHHHHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 5567899999999999999988776542 47777764
No 182
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=45.23 E-value=86 Score=27.17 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=35.3
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhcc-------CC--ccCCHHHHHHHHHhCCCeEE
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITS-------KA--KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~-------~g--~eRt~~E~~~Ll~~aGf~~~ 165 (181)
+..++|-..+++...++++++-+...+ |. --+...+.++.|.+.|+.++
T Consensus 107 i~s~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 107 IASYVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred EEehhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 889999888887777887777554432 22 44556678888888888775
No 183
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=44.75 E-value=77 Score=28.18 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=57.8
Q ss_pred CeEEEec-------------CC-CCceEEEeec-hhhhhhh--------ccCCCceEEecCCCCC---CCCcceEecccc
Q 036440 29 GSLVDVG-------------AF-PCVKCTEFDQ-PHVVANL--------LDTNNLKYLADDFFQS---IPPVCMIPLRLG 82 (181)
Q Consensus 29 ~~lvDvG-------------~~-P~l~~~~~Dl-P~Vv~~a--------~~~~ri~~~~gDff~~---~P~~d~~~~~~~ 82 (181)
++|+=|| .+ ++.+++++|. |..++.+ .++.+++++.+|..+. +-..|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV----- 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV----- 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE-----
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE-----
Confidence 4788888 23 5778889998 4544433 2488999999998742 2234666
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--ccCCHHHHHHHH---
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--KLSTEKELESLF--- 157 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--~eRt~~E~~~Ll--- 157 (181)
++.... --+.++-.+||.++...|+||+ -.|+....+++|
T Consensus 197 ----------------------------------~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~ 241 (276)
T PF03059_consen 197 ----------------------------------FLAALV-GMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV 241 (276)
T ss_dssp ----------------------------------EE-TT--S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS--
T ss_pred ----------------------------------EEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC
Confidence 222222 2235567789999999999998 233333333322
Q ss_pred ----HhCCCeEEEEE-EcCC-CCeEEEEEC
Q 036440 158 ----VEVHFHHYKIT-PLFG-LPSLIEVYP 181 (181)
Q Consensus 158 ----~~aGf~~~~i~-~~~~-~~~viE~~~ 181 (181)
+--||....+. |.+. ..|+|-+++
T Consensus 242 vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk 271 (276)
T PF03059_consen 242 VDPEDLRGFEVLAVVHPTDEVINSVVFARK 271 (276)
T ss_dssp --TGGGTTEEEEEEE---TT---EEEEE--
T ss_pred CChHHCCCeEEEEEECCCCCceeEEEEEEe
Confidence 11299986655 6654 357776653
No 184
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=43.52 E-value=86 Score=29.11 Aligned_cols=46 Identities=30% Similarity=0.345 Sum_probs=35.5
Q ss_pred CCCeEEEecCCCC----------ceEEEeechhhhhhhccCCCceEEecCCCCCCC
Q 036440 27 RLGSLVDVGAFPC----------VKCTEFDQPHVVANLLDTNNLKYLADDFFQSIP 72 (181)
Q Consensus 27 ~~~~lvDvG~~P~----------l~~~~~DlP~Vv~~a~~~~ri~~~~gDff~~~P 72 (181)
.-.++||+|+-|+ .+.+.+|.-...+....++||++..+|-|...|
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p 266 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRP 266 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCC
Confidence 4468999994443 578999965555555668999999999998766
No 185
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.71 E-value=14 Score=31.16 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=32.8
Q ss_pred hhhhhcccc----cceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 106 FSWLNFMKR----VINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 106 ~~~~~~~~~----~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
.+|...|.. .|+-.|++-.+.-++-+.-|+.|+.-++|+|
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G 80 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGG 80 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCc
Confidence 445555443 6688889988889999999999999999999
No 186
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=42.26 E-value=49 Score=27.77 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +...-.+++||| .-|.-+.+.+|. |+.++.+.. ..+++++.+|-...+|.
T Consensus 63 ~~l~~L--~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 63 RMLEAL--DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHT--TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHHHH--hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 445566 566778999999 234445566664 666665542 45899999999887765
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCC
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGR 100 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (181)
.|.+..+.... .+--+|+..+.+|+
T Consensus 141 pfD~I~v~~a~~--~ip~~l~~qL~~gG 166 (209)
T PF01135_consen 141 PFDRIIVTAAVP--EIPEALLEQLKPGG 166 (209)
T ss_dssp SEEEEEESSBBS--S--HHHHHTEEEEE
T ss_pred CcCEEEEeeccc--hHHHHHHHhcCCCc
Confidence 48885555543 33455666666553
No 187
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=41.45 E-value=67 Score=28.36 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=42.8
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCC-CCCCcc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQ-SIPPVC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~-~~P~~d 75 (181)
..+++.. +...-.+|+||| .-...+.+.+|+- ..++.+. ..++++++.+|+.+ .+|..|
T Consensus 26 ~~Iv~~~--~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d 103 (294)
T PTZ00338 26 DKIVEKA--AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFD 103 (294)
T ss_pred HHHHHhc--CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccC
Confidence 5556665 556667999999 1112345666663 3333222 25789999999986 355567
Q ss_pred eEeccccch
Q 036440 76 MIPLRLGYS 84 (181)
Q Consensus 76 ~~~~~~~~~ 84 (181)
.+-.++-|+
T Consensus 104 ~VvaNlPY~ 112 (294)
T PTZ00338 104 VCVANVPYQ 112 (294)
T ss_pred EEEecCCcc
Confidence 776676665
No 188
>PF00540 Gag_p17: gag gene protein p17 (matrix protein); InterPro: IPR000071 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from immunodeficiency lentiviruses, such as Human immunodeficiency virus (HIV) and Simian immunodeficiency virus (SIV-cpz) []. The structure of the HIV protein consists of 5 alpha helices, a short 3.10 helix and a 3-stranded mixed beta-sheet [].; GO: 0005198 structural molecule activity; PDB: 2JMG_A 1L6N_A 2NV3_A 1ED1_A 1ECW_A 2C7U_C 2H3F_A 1HIW_S 2H3V_A 2H3I_A ....
Probab=39.44 E-value=19 Score=29.20 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHHHhccCCccCCHHHHHHHHH
Q 036440 125 FGDEESVKILKICREAITSKAKLSTEKELESLFV 158 (181)
Q Consensus 125 w~D~~~~~iL~~~~~a~~~~g~eRt~~E~~~Ll~ 158 (181)
.+-+.|.+||..+..+++.|+ +|+++|+-
T Consensus 51 eT~EGC~qIl~qL~P~l~TGS-----eeLkSL~N 79 (140)
T PF00540_consen 51 ETAEGCQQILEQLQPLLPTGS-----EELKSLFN 79 (140)
T ss_dssp CSHHHHHHHHHHHGGGCTTSH-----HHHHHHHH
T ss_pred chhhhhhcceeccCCCCcCCc-----cccchhhh
Confidence 467899999999999999885 55666653
No 189
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=39.36 E-value=36 Score=26.78 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=19.6
Q ss_pred hccCC-ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 141 ITSKA-KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 141 ~~~~g-~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
++-|| +....+|++++|+++||+.|+.+
T Consensus 11 INVGG~nki~MaeLr~~l~~~Gf~~V~Ty 39 (137)
T PF08002_consen 11 INVGGKNKIKMAELREALEDLGFTNVRTY 39 (137)
T ss_dssp -SBTTBS---HHHHHHHHHHCT-EEEEEE
T ss_pred eecCCCCcccHHHHHHHHHHcCCCCceEE
Confidence 45667 45789999999999999999854
No 190
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=38.87 E-value=2.8e+02 Score=24.57 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.0
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEE--EcCCCCeEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKIT--PLFGLPSLIEV 179 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~--~~~~~~~viE~ 179 (181)
..+-..+...++++-||+...+. |+.|..+=||.
T Consensus 201 ~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~ 236 (245)
T COG1189 201 HAEVLSKIENFAKELGFQVKGLIKSPIKGGKGNIEF 236 (245)
T ss_pred HHHHHHHHHHHHhhcCcEEeeeEccCccCCCCcEee
Confidence 56677888999999999999887 66677666664
No 191
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=38.65 E-value=65 Score=22.93 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=27.7
Q ss_pred cCChHH--HHHHHHHHHHHhccCCccCCHHHHHHHHHhC
Q 036440 124 VFGDEE--SVKILKICREAITSKAKLSTEKELESLFVEV 160 (181)
Q Consensus 124 dw~D~~--~~~iL~~~~~a~~~~g~eRt~~E~~~Ll~~a 160 (181)
.|+... ...||..+.+.++| |+..|++|..+.|...
T Consensus 5 ~~P~k~~~r~~iL~~l~~~f~~-g~~y~E~EVN~~L~~~ 42 (71)
T PF09860_consen 5 RWPSKRKKRLVILEYLASRFEP-GREYSEKEVNEILKRF 42 (71)
T ss_pred ccCccHHHHHHHHHHHHHhCCC-CCccCHHHHHHHHHHH
Confidence 444433 34689999999966 4999999999998875
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=38.22 E-value=82 Score=28.46 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=30.1
Q ss_pred CCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC
Q 036440 28 LGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ 69 (181)
Q Consensus 28 ~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~ 69 (181)
-.+++|+| +.+..+.+.+|. |..++.+.. -+++++..+|+.+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~ 292 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAK 292 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence 47899999 666677888886 555554432 2478999999865
No 193
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=38.19 E-value=1.5e+02 Score=28.14 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=36.3
Q ss_pred HHHHHhhhhhcCCCeEEEec----------CCCCc-eEEEeechhhhhhh-------ccCCCceEEecCCCC-CCCC-cc
Q 036440 16 LALKYCKQIFERLGSLVDVG----------AFPCV-KCTEFDQPHVVANL-------LDTNNLKYLADDFFQ-SIPP-VC 75 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG----------~~P~l-~~~~~DlP~Vv~~a-------~~~~ri~~~~gDff~-~~P~-~d 75 (181)
.+++... ||++ +.||||| +-.+. +...++--+..+-+ ...+||+.++|-.=+ ++|. +|
T Consensus 168 Ail~N~s-DF~~-kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHS-DFQD-KIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhccc-ccCC-cEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 3444332 5554 6899999 22222 23444443433322 348999999998875 5887 78
Q ss_pred eE
Q 036440 76 MI 77 (181)
Q Consensus 76 ~~ 77 (181)
++
T Consensus 246 vi 247 (517)
T KOG1500|consen 246 VI 247 (517)
T ss_pred EE
Confidence 77
No 194
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=37.37 E-value=14 Score=33.03 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=37.2
Q ss_pred hhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------ccCCHHHHHHHHHhCCCeEEE
Q 036440 106 FSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----------------KLSTEKELESLFVEVHFHHYK 166 (181)
Q Consensus 106 ~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----------------~eRt~~E~~~Ll~~aGf~~~~ 166 (181)
..|.++|.-+++=....|-..++ ...+++|+| +.--.+...+|+.+|||+-+.
T Consensus 217 ~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 217 SKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred HhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 34566666677777777777766 456778888 333456788999999998653
No 195
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=36.59 E-value=1.5e+02 Score=26.64 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=33.7
Q ss_pred hcCCCeEEEec------------CCCC-ceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC---cceE
Q 036440 25 FERLGSLVDVG------------AFPC-VKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP---VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~-l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~---~d~~ 77 (181)
.+.-.+|+|+| .++. -+.+.+|. |..++.+.. .++++++.+|..+.++. .|++
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~I 153 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVI 153 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEE
Confidence 44557999999 3332 24667776 455544431 35799999998765443 5776
No 196
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=36.51 E-value=1.5e+02 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=34.9
Q ss_pred HHHHHhhhhhcC--CCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCc--eEEecCCCCCCCC
Q 036440 16 LALKYCKQIFER--LGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNL--KYLADDFFQSIPP 73 (181)
Q Consensus 16 ~~l~~~~~d~~~--~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri--~~~~gDff~~~P~ 73 (181)
..++.. ++.+ .+-+|||| .-++...+.+|. |..++.+.. ..+ .++-+||=+.+|-
T Consensus 39 RaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 39 RALELL--ALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHh--hCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCC
Confidence 334444 4555 78899999 556677788997 677776653 333 3555666666653
No 197
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=36.45 E-value=1.3e+02 Score=27.84 Aligned_cols=101 Identities=10% Similarity=0.162 Sum_probs=59.0
Q ss_pred CCCeEEEec----------CCC-CceEEEeech-hhhhhhc-------cC-CCceEEecCCCCCCC-------CcceEec
Q 036440 27 RLGSLVDVG----------AFP-CVKCTEFDQP-HVVANLL-------DT-NNLKYLADDFFQSIP-------PVCMIPL 79 (181)
Q Consensus 27 ~~~~lvDvG----------~~P-~l~~~~~DlP-~Vv~~a~-------~~-~ri~~~~gDff~~~P-------~~d~~~~ 79 (181)
.-++|+|+| +.+ ..+.+.+|.- ..++.+. .. ++++++.+|.|+.++ ..|++.+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 457899999 223 3377889974 4444332 12 489999999987431 2577744
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-HHHHHHHHHHHHHhccCC--------ccCCH
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-EESVKILKICREAITSKA--------KLSTE 150 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-~~~~~iL~~~~~a~~~~g--------~eRt~ 150 (181)
+-=|. . ..+ .-+ +.. ..-..+++.+...++||| ..-+.
T Consensus 300 DPP~f---------~---~~k-------------------~~l--~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~ 346 (396)
T PRK15128 300 DPPKF---------V---ENK-------------------SQL--MGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTS 346 (396)
T ss_pred CCCCC---------C---CCh-------------------HHH--HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCH
Confidence 43210 0 000 000 000 122356677888899999 44567
Q ss_pred HHHHHHHHhC
Q 036440 151 KELESLFVEV 160 (181)
Q Consensus 151 ~E~~~Ll~~a 160 (181)
+++.+.+.+|
T Consensus 347 ~~f~~~v~~a 356 (396)
T PRK15128 347 DLFQKIIADA 356 (396)
T ss_pred HHHHHHHHHH
Confidence 8888887665
No 198
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.86 E-value=59 Score=27.80 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=33.3
Q ss_pred HHHHHhhhhhcCCCeEEEecCCCC-------------ceEEEeechhhhhhhccCCCceEEecCCCC
Q 036440 16 LALKYCKQIFERLGSLVDVGAFPC-------------VKCTEFDQPHVVANLLDTNNLKYLADDFFQ 69 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG~~P~-------------l~~~~~DlP~Vv~~a~~~~ri~~~~gDff~ 69 (181)
++.+.|. -|+.-..|+|+|+-|+ .+.+..|+-+.-+ -+.+.++.+||++
T Consensus 35 el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~ 96 (205)
T COG0293 35 ELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITD 96 (205)
T ss_pred HHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccC
Confidence 4455563 6778899999994444 3457777654432 3349999999985
No 199
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=32.83 E-value=49 Score=21.35 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 036440 150 EKELESLFVEVHFHHYKI 167 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~i 167 (181)
.+|+..+|++.||...+.
T Consensus 1 ~~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp -HHHHHHHHHTT-EEEEE
T ss_pred ChHHHHHHHHCCCEEecC
Confidence 368999999999998754
No 200
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.78 E-value=2.5e+02 Score=26.03 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=42.5
Q ss_pred cceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------------------ccCCHHHHHHHHHhCCC
Q 036440 115 VINMQIIIHVFGDEESVKILKICREAITSKA--------------------------------KLSTEKELESLFVEVHF 162 (181)
Q Consensus 115 ~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------------------~eRt~~E~~~Ll~~aGf 162 (181)
+++--.+|-.-..+++..+++-+...++... .--|.|..++-+-++||
T Consensus 191 i~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw 270 (335)
T KOG2918|consen 191 IFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGW 270 (335)
T ss_pred eehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCC
Confidence 4455666777788888888888877776554 55677888888999999
Q ss_pred eEEEEEEc
Q 036440 163 HHYKITPL 170 (181)
Q Consensus 163 ~~~~i~~~ 170 (181)
.-+.+.-+
T Consensus 271 ~~v~a~Dm 278 (335)
T KOG2918|consen 271 EYVIAVDM 278 (335)
T ss_pred ceeehhhH
Confidence 99887644
No 201
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.21 E-value=88 Score=25.72 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHHhccC-C-----------------------------------------ccCCHHHHHHHHHhCCC
Q 036440 125 FGDEESVKILKICREAITSK-A-----------------------------------------KLSTEKELESLFVEVHF 162 (181)
Q Consensus 125 w~D~~~~~iL~~~~~a~~~~-g-----------------------------------------~eRt~~E~~~Ll~~aGf 162 (181)
=+.|++.++|....+.+..= | +-.|.++.+.+|+++||
T Consensus 69 ~tKeeA~Kml~~~s~kykni~Gv~ekidY~D~yA~E~vdId~tkvd~k~L~k~~G~s~~~d~~k~iSm~~sek~Lk~~Gf 148 (152)
T COG4808 69 KTKEEAAKMLEPLSAKYKNIAGVEEKLDYKDTYAQENVDIDMTKVDFKALQKISGISVSGDASKGISMKQSEKLLKAAGF 148 (152)
T ss_pred ccHHHHHHHHHHHHHHhcCCcccceeeeeecccceeeeccceeeecHHHHhcCcCccccCcccccccHHHHHHHHHhcCc
Confidence 35789999999988888642 2 77899999999999999
Q ss_pred eEE
Q 036440 163 HHY 165 (181)
Q Consensus 163 ~~~ 165 (181)
+.+
T Consensus 149 ke~ 151 (152)
T COG4808 149 KEV 151 (152)
T ss_pred ccC
Confidence 864
No 202
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=30.81 E-value=3.4e+02 Score=23.11 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=34.0
Q ss_pred cCCCeEEEecCCCC-------------ceEEEeec-hhhhhhhc----c--CCCceEEecCCCC---CCCCcceEecccc
Q 036440 26 ERLGSLVDVGAFPC-------------VKCTEFDQ-PHVVANLL----D--TNNLKYLADDFFQ---SIPPVCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG~~P~-------------l~~~~~Dl-P~Vv~~a~----~--~~ri~~~~gDff~---~~P~~d~~~~~~~ 82 (181)
..-.+|+|+|+-|+ -+.+.+|. |.-++.+. . ..+++++..|.-+ ..+..|.++++.-
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 34468999993332 35677776 44443332 1 2468888888543 1234788866664
Q ss_pred c
Q 036440 83 Y 83 (181)
Q Consensus 83 ~ 83 (181)
.
T Consensus 150 c 150 (264)
T TIGR00446 150 C 150 (264)
T ss_pred C
Confidence 3
No 203
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=30.56 E-value=1.2e+02 Score=26.18 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=34.8
Q ss_pred hcCCCeEEEec------------C-CCCceEEEeech-hhhhhh-------ccCCCceEEecCCCCCCC
Q 036440 25 FERLGSLVDVG------------A-FPCVKCTEFDQP-HVVANL-------LDTNNLKYLADDFFQSIP 72 (181)
Q Consensus 25 ~~~~~~lvDvG------------~-~P~l~~~~~DlP-~Vv~~a-------~~~~ri~~~~gDff~~~P 72 (181)
..+.+.+|.|| + -|+.+.+-+|.. +..+.| ...++|+++.||..+.+|
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 44678999999 3 356788888874 444433 347899999999887554
No 204
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=29.22 E-value=4e+02 Score=23.48 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=56.8
Q ss_pred CeEEEec-----------CCCCceEEEeechh-hhh----hhc-cCCCceEEecCCCCCCCC-----cceEeccccchhh
Q 036440 29 GSLVDVG-----------AFPCVKCTEFDQPH-VVA----NLL-DTNNLKYLADDFFQSIPP-----VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG-----------~~P~l~~~~~DlP~-Vv~----~a~-~~~ri~~~~gDff~~~P~-----~d~~~~~~~~~~~ 86 (181)
+.++=+| ..+..+.+|+|+-+ .++ .+. ..-.|+....|+-+++|. .|++
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f--------- 116 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVF--------- 116 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEE---------
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEE---------
Confidence 5677788 56778999999875 222 222 133499999999999996 3766
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc--CChHHHHHHHHHHHHHhccCC---------ccCCHH---H
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV--FGDEESVKILKICREAITSKA---------KLSTEK---E 152 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd--w~D~~~~~iL~~~~~a~~~~g---------~eRt~~---E 152 (181)
+ -| |.-+...-.|.++.++++..| ++.|.+ +
T Consensus 117 ------------------------------~-----TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~ 161 (243)
T PF01861_consen 117 ------------------------------F-----TDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLE 161 (243)
T ss_dssp ------------------------------E-----E---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHH
T ss_pred ------------------------------E-----eCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHH
Confidence 1 12 445566667888888887666 776766 4
Q ss_pred HHHHHHhCCCeEEEEEEcCC
Q 036440 153 LESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 153 ~~~Ll~~aGf~~~~i~~~~~ 172 (181)
.++.+.+.||.+..+.|-+.
T Consensus 162 ~Q~~l~~~gl~i~dii~~Fn 181 (243)
T PF01861_consen 162 VQRFLLEMGLVITDIIPDFN 181 (243)
T ss_dssp HHHHHHTS--EEEEEEEEEE
T ss_pred HHHHHHHCCcCHHHHHhhhc
Confidence 57788899999999987654
No 205
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.82 E-value=25 Score=33.32 Aligned_cols=29 Identities=0% Similarity=-0.082 Sum_probs=20.5
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
.+..+||+=+..+-.-.++..-..+.|||
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCC
Confidence 56677777776665557777777777877
No 206
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=27.63 E-value=1.8e+02 Score=26.47 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=52.4
Q ss_pred CCeEEEec--------CCCCceEEEeechhhh-hhhccCCCceEEecCCCCC-CCC--cceEeccccchhhhHHhhhhhh
Q 036440 28 LGSLVDVG--------AFPCVKCTEFDQPHVV-ANLLDTNNLKYLADDFFQS-IPP--VCMIPLRLGYSHIKIMIAFFIR 95 (181)
Q Consensus 28 ~~~lvDvG--------~~P~l~~~~~DlP~Vv-~~a~~~~ri~~~~gDff~~-~P~--~d~~~~~~~~~~~~~~~~~~~~ 95 (181)
-..++|+| .+|.+-.+..|+-+-+ ..++.++.....-.|..+. .+. .|..
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~------------------ 107 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAA------------------ 107 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccc------------------
Confidence 35789999 5577777888887544 3444343335666777753 222 4555
Q ss_pred hhcCCCccchhhhhhcccccceeeeeeccCC-hHHHHHHHHHHHHHhccCC
Q 036440 96 LVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-DEESVKILKICREAITSKA 145 (181)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-D~~~~~iL~~~~~a~~~~g 145 (181)
+=..++|.|. -++..++|+.+.+-+.|||
T Consensus 108 ---------------------lsiavihhlsT~~RR~~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 108 ---------------------LSIAVIHHLSTRERRERALEELLRVLRPGG 137 (293)
T ss_pred ---------------------hhhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 3345666654 5556699999999999999
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=26.79 E-value=52 Score=27.17 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=30.9
Q ss_pred eEEEec------------CCCCceEEEeech--------hhhhhhccCCCceEEecCCCC-CCCC-cceE
Q 036440 30 SLVDVG------------AFPCVKCTEFDQP--------HVVANLLDTNNLKYLADDFFQ-SIPP-VCMI 77 (181)
Q Consensus 30 ~lvDvG------------~~P~l~~~~~DlP--------~Vv~~a~~~~ri~~~~gDff~-~~P~-~d~~ 77 (181)
+++||| .+|+++.+++|-= +++....+ ++++.+.+..=+ ..+. .|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v 119 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEPEYRESFDVV 119 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecccccCCCccEE
Confidence 899999 8899999999943 34444444 468888877766 2222 6777
No 208
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=24.88 E-value=1.3e+02 Score=21.84 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=26.4
Q ss_pred cCChHHHHHHHHHHHHHhccCC-----------------------------------ccCCHHHHHHHHHhCCCe
Q 036440 124 VFGDEESVKILKICREAITSKA-----------------------------------KLSTEKELESLFVEVHFH 163 (181)
Q Consensus 124 dw~D~~~~~iL~~~~~a~~~~g-----------------------------------~eRt~~E~~~Ll~~aGf~ 163 (181)
.-+|+++++++...+=.++.-+ ..|+.+|-.+++++.||+
T Consensus 18 ~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~d~~~i~~lG~~ 92 (93)
T PF06968_consen 18 PLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDEDIEMIEKLGLE 92 (93)
T ss_dssp ---HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHHHHHHHHHTT-E
T ss_pred CCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHHHHHHHHHcCCC
Confidence 3478888888887777777543 337777777777777764
No 209
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=24.53 E-value=61 Score=27.75 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCeEEEec------------CCCCceEEEeechh--------hhhhhccCCCceEEecCCC--CCCCC-cceEecc
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQPH--------VVANLLDTNNLKYLADDFF--QSIPP-VCMIPLR 80 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~DlP~--------Vv~~a~~~~ri~~~~gDff--~~~P~-~d~~~~~ 80 (181)
..+++||| .+|+++.+++|--. +....+ -++++++.+..= ...+. .|++..|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L~nv~i~~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-LENVEIVHGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-CCCeEEehhhHhhcccccccCcEEEee
Confidence 58999999 78888888888432 222212 455666655442 22233 6776333
No 210
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=24.48 E-value=93 Score=32.05 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=48.0
Q ss_pred hhhhhhcccc--cceeeeeeccCCh-HHH--------HHHHHHHHHHhccCC------ccCCHHHHHHHHHh----CCCe
Q 036440 105 IFSWLNFMKR--VINMQIIIHVFGD-EES--------VKILKICREAITSKA------KLSTEKELESLFVE----VHFH 163 (181)
Q Consensus 105 ~~~~~~~~~~--~~~l~~iLHdw~D-~~~--------~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~----aGf~ 163 (181)
--+|+.|.|. +.......-+=++ |++ .+.++++++-++++| ---+.+-|..+++. |||.
T Consensus 531 ~~~w~~f~~~ev~~~~~~~~~~~~~~E~a~~~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~ 610 (875)
T COG1743 531 ATQWQEFAKDEVSTNEGRFVGGGGRKEGAVEEFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQ 610 (875)
T ss_pred hhHhHHHhhcccccCcccccCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCce
Confidence 3789999998 4444444444444 232 377999999999999 23345577777766 9999
Q ss_pred EEEEEEcCC
Q 036440 164 HYKITPLFG 172 (181)
Q Consensus 164 ~~~i~~~~~ 172 (181)
++..+|+..
T Consensus 611 iTr~~pv~T 619 (875)
T COG1743 611 ITRAWPVRT 619 (875)
T ss_pred eeccccccc
Confidence 999998854
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=24.30 E-value=1.4e+02 Score=25.35 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=35.4
Q ss_pred hHHHHHHhhhhhcCCCeEEEecCCCC----------ceEEEeech-hhhhhhc----cCCCceEEecCCCC
Q 036440 14 ASLALKYCKQIFERLGSLVDVGAFPC----------VKCTEFDQP-HVVANLL----DTNNLKYLADDFFQ 69 (181)
Q Consensus 14 ~~~~l~~~~~d~~~~~~lvDvG~~P~----------l~~~~~DlP-~Vv~~a~----~~~ri~~~~gDff~ 69 (181)
+..+++.. +.+.-..|+|+|.-++ -+.++++.- .-++... ..+|++++.+|+++
T Consensus 19 ~~~Iv~~~--~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 19 ADKIVDAL--DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHH--TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 36777777 6778899999992222 345555553 3333222 36899999999996
No 212
>PRK09019 translation initiation factor Sui1; Validated
Probab=24.27 E-value=3.2e+02 Score=21.17 Aligned_cols=54 Identities=15% Similarity=0.020 Sum_probs=39.6
Q ss_pred hcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------ccCCHHHHHHHHHhCCCeEE
Q 036440 110 NFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 110 ~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
|.+|.+-++.-+ +-.+.+..+|++.+...+.-|| .-=-.+...++|.+.||+..
T Consensus 42 RkGK~VTiI~Gl--~~~~~dlk~l~K~lKkk~gcGGtvk~~~IelQGD~r~~v~~~L~~~Gf~~k 104 (108)
T PRK09019 42 RKGKGVCLITGL--DLDDAELKKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVK 104 (108)
T ss_pred CCCCeEEEEeCC--cCCHHHHHHHHHHHHHHhcCCCeEEcCEEEEcCcHHHHHHHHHHHCCCeEE
Confidence 355666666654 4567888899999999999998 11123568899999999865
No 213
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=23.46 E-value=90 Score=24.09 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHHhccC----C-----ccCCHHHHHHHHHhCCC-eEEEE
Q 036440 125 FGDEESVKILKICREAITSK----A-----KLSTEKELESLFVEVHF-HHYKI 167 (181)
Q Consensus 125 w~D~~~~~iL~~~~~a~~~~----g-----~eRt~~E~~~Ll~~aGf-~~~~i 167 (181)
.+.++..++++.+.+.+... | +++..+.++.+|..+|| ..++|
T Consensus 103 ~~~~~~~~~~~~a~~~~~~~a~~~~i~~~A~~~a~~~l~~ll~~~g~~~~v~V 155 (157)
T PF14014_consen 103 ITPEDQNEAQKEAKKKIEQEANESGILEQAKENAEKALEQLLKSLGFDKEVTV 155 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhccccccEEE
Confidence 45566666776665555433 2 88999999999999999 66665
No 214
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=23.42 E-value=1.9e+02 Score=25.56 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHhhhhhcC---CCeEEEec------------CCCCceEEEeechhh-hhhh-----ccCCCceEEecCCCCCCCC--cc
Q 036440 19 KYCKQIFER---LGSLVDVG------------AFPCVKCTEFDQPHV-VANL-----LDTNNLKYLADDFFQSIPP--VC 75 (181)
Q Consensus 19 ~~~~~d~~~---~~~lvDvG------------~~P~l~~~~~DlP~V-v~~a-----~~~~ri~~~~gDff~~~P~--~d 75 (181)
.-|+.-|+. ..+|+|+| .-|.++.+..|+-.- ++.. .+..+.+..-.|.+...|. +|
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~D 173 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPAD 173 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEES
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcc
Confidence 344444555 47999999 667788999998643 3322 2467778888899987766 68
Q ss_pred eE
Q 036440 76 MI 77 (181)
Q Consensus 76 ~~ 77 (181)
+.
T Consensus 174 la 175 (251)
T PF07091_consen 174 LA 175 (251)
T ss_dssp EE
T ss_pred hh
Confidence 76
No 215
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=22.06 E-value=1.1e+02 Score=28.78 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCeEEEec------------CC----CCceEEEeec-hhhh-h------hhccCCCceEEecCCCC-CCCC-cceE
Q 036440 28 LGSLVDVG------------AF----PCVKCTEFDQ-PHVV-A------NLLDTNNLKYLADDFFQ-SIPP-VCMI 77 (181)
Q Consensus 28 ~~~lvDvG------------~~----P~l~~~~~Dl-P~Vv-~------~a~~~~ri~~~~gDff~-~~P~-~d~~ 77 (181)
-..|+||| +- -..+...++- |..+ . .....++|+++.+|+-+ ..|. +|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEE
Confidence 35799999 11 2346666664 3322 1 11236899999999987 4565 8887
No 216
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=21.99 E-value=1.4e+02 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=23.9
Q ss_pred cCChHHHHHHHHHHHHHhccCCccCCHHHHHHHHHhCC
Q 036440 124 VFGDEESVKILKICREAITSKAKLSTEKELESLFVEVH 161 (181)
Q Consensus 124 dw~D~~~~~iL~~~~~a~~~~g~eRt~~E~~~Ll~~aG 161 (181)
+++|++.++|+ ..+|.+-|.+|+..+|.+-+
T Consensus 13 ~l~d~~m~~if-------~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 13 DLKDDDMIEIF-------ALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred cCChHHHHHHH-------HHcCCccCHHHHHHHHCCCC
Confidence 67788777776 34578889999999998754
No 217
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=21.78 E-value=1.7e+02 Score=25.72 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhccCC---------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 127 DEESVKILKICREAITSKA---------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 127 D~~~~~iL~~~~~a~~~~g---------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+-+.-+.++++++||| .-++..-...-.+++||++..-.
T Consensus 142 ~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 142 PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 6777789999999999999 45566677788899999987544
No 218
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.48 E-value=2.3e+02 Score=18.91 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=28.3
Q ss_pred HHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 135 KICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 135 ~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
++....+++|. ..-+.+++..++++.|++++.+...++.
T Consensus 18 ~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~~~~~ 63 (70)
T PF01206_consen 18 KKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEEEGGE 63 (70)
T ss_dssp HHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEESSSS
T ss_pred HHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCE
Confidence 33344455555 6677899999999999999988776553
No 219
>PRK06824 translation initiation factor Sui1; Validated
Probab=20.98 E-value=3.3e+02 Score=21.41 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=40.8
Q ss_pred hcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------ccCCHHHHHHHHHhCCCeEE
Q 036440 110 NFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 110 ~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
|.+|.+-+++-+ .-.+.+..++++.+...+.-|| .-=-.+...++|++.||++.
T Consensus 52 r~gK~VTvI~Gl--~~~~~dlk~l~K~LKkk~gcGGtvkd~~IeiQGD~r~~v~~~L~~~G~~~k 114 (118)
T PRK06824 52 RGGKTVTVITGV--PLAEDALKELAKELKRRCGTGGTLKDGVIEIQGDHVELLLAELLKRGFKAK 114 (118)
T ss_pred CCCceEEEEeCC--cCCHHHHHHHHHHHHHHhcCCceEecCEEEEcCcHHHHHHHHHHHCCCeEe
Confidence 577887777766 3467777899999999999988 11123568899999999865
No 220
>PRK07451 translation initiation factor Sui1; Validated
Probab=20.58 E-value=3.4e+02 Score=21.21 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=38.3
Q ss_pred cccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------ccCCHHHHHHHHHhCCCeEE
Q 036440 111 FMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 111 ~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
.+|.+-++..+ +-.+.+..+|++.+..++.-|| .-=-.+...++|.+.||+..
T Consensus 50 ~GK~VTvV~Gl--~~~~~dlk~LaK~LK~k~gcGGtvkd~~IelQGD~r~~v~~~L~~~Gf~~k 111 (115)
T PRK07451 50 KGKTVTVITGF--QHKPETLAKLLKQLKTQCGSGGTVKDNTIEIQGDHRQKILEILIKLGYKAK 111 (115)
T ss_pred CCCeEEEEeCC--CCCHHHHHHHHHHHHHHhcCCceEcCCEEEEcCcHHHHHHHHHHHCCCeEe
Confidence 45666666644 3456788899999999999988 11123578899999999764
Done!