Query 036441
Match_columns 361
No_of_seqs 180 out of 245
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 4E-34 8.8E-39 229.7 7.7 79 162-240 1-80 (80)
2 smart00338 BRLZ basic region l 98.7 5.1E-08 1.1E-12 74.8 6.8 45 74-121 2-46 (65)
3 PF00170 bZIP_1: bZIP transcri 98.6 7.9E-08 1.7E-12 73.6 5.9 44 75-121 3-46 (64)
4 PF07716 bZIP_2: Basic region 98.5 2.5E-07 5.5E-12 68.9 6.4 46 74-123 2-47 (54)
5 KOG3584 cAMP response element 98.0 5.2E-06 1.1E-10 81.1 5.0 40 72-114 286-325 (348)
6 COG3678 CpxP P pilus assembly/ 96.7 0.021 4.5E-07 51.9 11.0 108 218-341 35-145 (160)
7 PF13801 Metal_resist: Heavy-m 96.5 0.03 6.5E-07 45.4 9.8 84 243-333 41-124 (125)
8 KOG4343 bZIP transcription fac 96.5 0.0044 9.6E-08 65.3 5.9 47 73-122 274-323 (655)
9 PF03131 bZIP_Maf: bZIP Maf tr 96.5 0.00055 1.2E-08 56.2 -0.7 40 76-118 29-68 (92)
10 PRK12750 cpxP periplasmic repr 96.1 0.27 5.9E-06 45.0 14.7 94 243-343 52-153 (170)
11 KOG0709 CREB/ATF family transc 94.7 0.028 6.2E-07 58.4 3.7 30 76-105 250-279 (472)
12 PRK10455 periplasmic protein; 94.0 0.56 1.2E-05 42.6 10.1 102 220-337 35-140 (161)
13 KOG0837 Transcriptional activa 92.1 0.22 4.8E-06 48.7 4.7 29 77-105 206-234 (279)
14 PRK10363 cpxP periplasmic repr 91.8 2.6 5.6E-05 38.8 11.1 99 243-354 50-151 (166)
15 PRK12751 cpxP periplasmic stre 91.6 4.2 9E-05 37.2 12.3 100 243-352 56-155 (162)
16 PF07813 LTXXQ: LTXXQ motif fa 91.6 1.2 2.7E-05 35.3 8.0 83 239-335 11-96 (100)
17 KOG4005 Transcription factor X 90.9 1 2.2E-05 43.8 7.9 45 74-121 66-110 (292)
18 KOG3119 Basic region leucine z 77.8 5.7 0.00012 38.8 6.2 46 73-121 190-235 (269)
19 KOG4571 Activating transcripti 69.0 17 0.00037 36.3 7.1 52 71-122 220-283 (294)
20 PF10552 ORF6C: ORF6C domain; 53.4 1.2E+02 0.0026 25.7 8.8 44 181-236 68-113 (116)
21 KOG4196 bZIP transcription fac 46.2 63 0.0014 28.9 6.0 34 74-107 50-83 (135)
22 KOG2391 Vacuolar sorting prote 40.2 1.8E+02 0.0039 30.0 8.9 26 252-277 244-269 (365)
23 PRK11702 hypothetical protein; 39.6 14 0.0003 32.0 0.9 13 90-102 5-17 (108)
24 KOG3725 SH3 domain protein SH3 38.1 3.4E+02 0.0073 27.4 10.2 24 179-202 236-259 (375)
25 PF07889 DUF1664: Protein of u 37.6 1.9E+02 0.0041 25.6 7.7 54 221-274 21-74 (126)
26 PF11459 DUF2893: Protein of u 37.6 74 0.0016 25.4 4.6 41 303-343 21-61 (69)
27 PF11471 Sugarporin_N: Maltopo 36.1 35 0.00075 26.4 2.5 13 109-121 40-52 (60)
28 cd00223 TOPRIM_TopoIIB_SPO TOP 34.0 53 0.0011 29.1 3.8 39 221-260 89-127 (160)
29 KOG2351 RNA polymerase II, fou 33.8 3.5E+02 0.0076 24.3 9.6 66 176-243 46-113 (134)
30 PF06013 WXG100: Proteins of 1 33.2 2E+02 0.0043 21.3 10.2 25 144-168 44-68 (86)
31 PF13628 DUF4142: Domain of un 32.4 3.2E+02 0.0069 23.3 8.6 99 93-195 30-133 (139)
32 PF06698 DUF1192: Protein of u 28.9 67 0.0015 24.9 3.0 20 100-122 23-42 (59)
33 PF15219 TEX12: Testis-express 28.2 3.8E+02 0.0082 22.9 7.8 60 264-323 35-94 (100)
34 PLN00060 meiotic recombination 27.0 73 0.0016 33.0 3.9 80 176-259 246-337 (384)
35 TIGR02302 aProt_lowcomp conser 25.9 1.1E+03 0.023 27.4 15.1 42 164-205 509-550 (851)
36 KOG4100 Uncharacterized conser 25.8 3.6E+02 0.0077 23.9 7.2 91 149-261 12-110 (125)
37 cd07637 BAR_ACAP3 The Bin/Amph 25.8 1.6E+02 0.0035 27.7 5.7 73 99-174 3-91 (200)
38 PF13586 DDE_Tnp_1_2: Transpos 25.8 31 0.00067 27.4 0.8 18 213-230 45-62 (88)
39 PF02181 FH2: Formin Homology 25.7 6.7E+02 0.014 24.9 11.4 52 294-345 317-368 (370)
40 PF09577 Spore_YpjB: Sporulati 24.6 2.8E+02 0.0061 26.9 7.1 89 179-280 80-186 (232)
41 KOG1656 Protein involved in gl 24.4 1.4E+02 0.0031 28.7 5.0 35 84-118 58-92 (221)
42 PF09789 DUF2353: Uncharacteri 24.3 87 0.0019 31.8 3.8 47 73-119 99-151 (319)
43 PF06210 DUF1003: Protein of u 23.8 2.2E+02 0.0049 24.3 5.7 39 80-119 53-91 (108)
44 PF09036 Bcr-Abl_Oligo: Bcr-Ab 23.4 92 0.002 25.4 3.0 28 101-128 33-60 (79)
45 PF00589 Phage_integrase: Phag 23.2 36 0.00079 28.5 0.8 19 221-239 28-46 (173)
46 PF05837 CENP-H: Centromere pr 22.9 2.7E+02 0.0059 23.4 6.0 41 83-123 31-73 (106)
47 PF07047 OPA3: Optic atrophy 3 22.8 2.3E+02 0.005 24.8 5.7 39 84-122 95-133 (134)
48 COG3165 Uncharacterized protei 22.8 3.8E+02 0.0081 25.8 7.4 37 241-283 127-163 (204)
49 KOG3759 Uncharacterized RUN do 22.6 5E+02 0.011 28.2 8.9 100 91-225 142-246 (621)
50 PTZ00446 vacuolar sorting prot 22.1 2E+02 0.0043 27.1 5.5 37 82-118 61-98 (191)
51 PF14362 DUF4407: Domain of un 21.9 5.3E+02 0.011 25.0 8.6 15 338-352 240-254 (301)
52 PRK14563 ribosome modulation f 21.7 25 0.00054 27.0 -0.5 7 223-229 39-45 (55)
53 TIGR01062 parC_Gneg DNA topois 21.5 9.7E+02 0.021 27.1 11.4 92 179-280 338-443 (735)
54 KOG2202 U2 snRNP splicing fact 20.8 1.2E+02 0.0026 30.1 3.8 42 147-192 76-118 (260)
55 PRK06669 fliH flagellar assemb 20.6 7.8E+02 0.017 23.8 10.0 48 113-173 112-159 (281)
56 PHA03395 p10 fibrous body prot 20.5 4.7E+02 0.01 21.9 6.7 60 258-329 8-67 (87)
57 smart00533 MUTSd DNA-binding d 20.2 3.2E+02 0.007 25.8 6.6 67 157-232 223-289 (308)
58 PF11471 Sugarporin_N: Maltopo 20.2 1.2E+02 0.0027 23.4 3.0 17 103-122 30-46 (60)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=4e-34 Score=229.67 Aligned_cols=79 Identities=53% Similarity=0.905 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccCCCCChHHHHHHHhccCCchhhHHhhcCC
Q 036441 162 RQIYELRNALQKHI-TDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQ 240 (361)
Q Consensus 162 ~~l~eLr~AL~s~~-~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkLL~~~ 240 (361)
+++.|||+|++++. +|.+|+.||+++++||++||++|+.+|++|||++|+|+|+||+||||+||||||||++||||+++
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 47899999999998 89999999999999999999999999999999999999999999999999999999999999874
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.69 E-value=5.1e-08 Score=74.81 Aligned_cols=45 Identities=53% Similarity=0.700 Sum_probs=39.1
Q ss_pred CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r 121 (361)
.++|-.||+.+||+||++||.|||.|++.||. ++..|+.|....+
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~---~~~~L~~en~~L~ 46 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENERLK 46 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 46789999999999999999999999999999 7777777666554
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.61 E-value=7.9e-08 Score=73.64 Aligned_cols=44 Identities=48% Similarity=0.747 Sum_probs=37.6
Q ss_pred ChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 75 SEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 75 ~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r 121 (361)
..|..+|+.+||+|||+||.|||.|+++||. ++..|+.|....+
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~~L~ 46 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENEELK 46 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHH
Confidence 3567899999999999999999999999999 8888887776555
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.53 E-value=2.5e-07 Score=68.90 Aligned_cols=46 Identities=46% Similarity=0.647 Sum_probs=39.5
Q ss_pred CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441 74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123 (361)
Q Consensus 74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~q 123 (361)
.+++..+|. .||+||++||-|||.|++.||. ++.+|+.|....+++
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQLRQE 47 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 467888999 9999999999999999999999 888887777766543
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.04 E-value=5.2e-06 Score=81.12 Aligned_cols=40 Identities=48% Similarity=0.690 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 036441 72 NKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLE 114 (361)
Q Consensus 72 ~~~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qle 114 (361)
....-|-.-||-+||||||.||..||-||..||| |++=||
T Consensus 286 ee~trKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T KOG3584|consen 286 EEATRKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence 3445577789999999999999999999999999 777665
No 6
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.021 Score=51.92 Aligned_cols=108 Identities=25% Similarity=0.336 Sum_probs=73.2
Q ss_pred HHHHHHHhccCCchh---hHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHH
Q 036441 218 TERFFQWIGGFRPSE---LLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQ 294 (361)
Q Consensus 218 ~Er~FLWiGGfRPS~---llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~q 294 (361)
+... +|.|+|-|=- .++.| +||++|..+|..+...-+ .++.+-+..-...+-+.+.++....
T Consensus 35 ~~~~-~~~g~~~~~~~~~~~~~l-----~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~------ 99 (160)
T COG3678 35 MADA-HHGGQFGPRHQGGMFKGL-----DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE------ 99 (160)
T ss_pred cccc-ccCCCCCccccccccccc-----cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH------
Confidence 4444 6888776653 24444 899999999998887766 4444444444445555554322222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036441 295 MVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGE 341 (361)
Q Consensus 295 m~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLlAl~e 341 (361)
+.|=...+.++....+.+.+|.++-.+|..||||.|.+.+=--.++
T Consensus 100 -aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~ 145 (160)
T COG3678 100 -AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ 145 (160)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1222556778888899999999999999999999999776555444
No 7
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=96.50 E-value=0.03 Score=45.44 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=64.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 036441 243 PLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQ 322 (361)
Q Consensus 243 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~ 322 (361)
+||++|..+|..+.......-..+-+.+......+...+.++++-. ..++.+ ++.+...-.+....|.+++.+
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~---~~~~~~~~~~l~~~~~~~~~~ 113 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEAL---LEEIREAQAELRQERLEHLLE 113 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999988875433322 133333 344555556667789999999
Q ss_pred HHhcCCHHHHH
Q 036441 323 MYRVLTTRQAA 333 (361)
Q Consensus 323 l~~ILTp~QAA 333 (361)
+..+|||-|=+
T Consensus 114 ~~~~LtpeQR~ 124 (125)
T PF13801_consen 114 IRAVLTPEQRA 124 (125)
T ss_dssp HHHTT-GGGHH
T ss_pred HHHcCCHHHhC
Confidence 99999998855
No 8
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=96.49 E-value=0.0044 Score=65.25 Aligned_cols=47 Identities=34% Similarity=0.493 Sum_probs=39.9
Q ss_pred CCChHHH---HHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 73 KPSEKTQ---RRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 73 ~~~~k~~---rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~ 122 (361)
+.|+|++ .|..+|||.|--||.|||-|++-||. +|..|++|-+..|.
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene~Lk~ 323 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENEQLKK 323 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 3466654 68999999999999999999999999 99999888776554
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=96.45 E-value=0.00055 Score=56.22 Aligned_cols=40 Identities=38% Similarity=0.528 Sum_probs=32.5
Q ss_pred hHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 76 EKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD 118 (361)
Q Consensus 76 ~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~ 118 (361)
-|-.||..+||.||++||-||+.++..||. .+.+|.+++.
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~---e~~~l~~~~~ 68 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEE---EIEQLRQEIE 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 478899999999999999999999999998 4444443333
No 10
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=96.10 E-value=0.27 Score=44.99 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhH
Q 036441 243 PLTEQQLIDVCNLRQSSQQAEDA--------LQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADH 314 (361)
Q Consensus 243 pLTeqQl~~I~~LqqstqqaEda--------Lsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~ 314 (361)
+||++|...|..++...+..=.+ ....|....+.+.+.+.++++-+. .+....+++ ..--.+.--
T Consensus 52 ~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDea----avral~~~~---~~~~~e~~v 124 (170)
T PRK12750 52 DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDEA----AANDLAKQM---VEKQVERRV 124 (170)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHH---HHHHHHHHH
Confidence 89999999999998777764333 455566666677676655444432 121111211 111111112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 036441 315 LRQQTMQQMYRVLTTRQAARALLALGEYF 343 (361)
Q Consensus 315 LR~qTL~~l~~ILTp~QAA~fLlAl~e~~ 343 (361)
-|.++.+++..||||-|=+.|---..+..
T Consensus 125 ~~~~~~~~~~~vLTpEQRak~~e~~~~r~ 153 (170)
T PRK12750 125 KMLEKRHQMLSILTPEQKAKFQELQQERM 153 (170)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 36678899999999999999887655543
No 11
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=94.69 E-value=0.028 Score=58.44 Aligned_cols=30 Identities=43% Similarity=0.603 Sum_probs=28.2
Q ss_pred hHHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441 76 EKTQRRLAQNREAARKSRLRKKAYVQQLES 105 (361)
Q Consensus 76 ~k~~rrlaqnreaarksrlrkkayvq~le~ 105 (361)
-|..||...|-+.|-.||-|||-||.+||.
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~ 279 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLES 279 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhh
Confidence 367799999999999999999999999999
No 12
>PRK10455 periplasmic protein; Reviewed
Probab=93.99 E-value=0.56 Score=42.63 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=58.9
Q ss_pred HHHHHhc---cCCchhhHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCCchHHHH
Q 036441 220 RFFQWIG---GFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQ-QGIDKLQQSLVQIITEEQLSSGIYQSQM 295 (361)
Q Consensus 220 r~FLWiG---GfRPS~llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLs-q~ma~LQqslad~~aa~~lg~~~~~~qm 295 (361)
.+.+|-| |..+...|+-| +||++|..+|..|.+..+..-...+ +..+.++ +.+.++++-. ..+
T Consensus 35 ~~~~~~~~~~g~~~~~m~~~L-----~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~FDe----aav 101 (161)
T PRK10455 35 KPMMHHKGKFGPHHDMMFKGL-----NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTFDK----AKA 101 (161)
T ss_pred CccccCCCCCCchhhhhhhhC-----CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCccCH----HHH
Confidence 3456654 44455555544 8999999999988777665533222 2333333 2233222222 123
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 036441 296 VAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALL 337 (361)
Q Consensus 296 ~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLl 337 (361)
...++++..+ -.+.--.|.++-.+|..||||-|-+.|=-
T Consensus 102 ra~~~k~~~~---~~~~~~~~~~~~~qiy~vLTPEQr~q~~~ 140 (161)
T PRK10455 102 EAQITKMEAQ---RKARMLAHMETQNKIYNVLTPEQKKQFNA 140 (161)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3333444332 22222367888899999999999997753
No 13
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=92.06 E-value=0.22 Score=48.72 Aligned_cols=29 Identities=45% Similarity=0.556 Sum_probs=24.2
Q ss_pred HHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441 77 KTQRRLAQNREAARKSRLRKKAYVQQLES 105 (361)
Q Consensus 77 k~~rrlaqnreaarksrlrkkayvq~le~ 105 (361)
|..|+=+.|||||+|||.||---|-+||.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEd 234 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLED 234 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45566688999999999999887777776
No 14
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=91.77 E-value=2.6 Score=38.84 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=61.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHH--HHHHHHHHhHHHHHH
Q 036441 243 PLTEQQLIDVCNLRQSSQQAEDALQQ-GIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEA--LESFVNQADHLRQQT 319 (361)
Q Consensus 243 pLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~--Le~fl~qAD~LR~qT 319 (361)
+||++|...|..|.+.-+.+...++. +++.++ +.+.++.+-+. .+...++|+.. .+.-| -|.++
T Consensus 50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~FDEa----avra~a~kma~~~~e~~V-----em~k~ 116 (166)
T PRK10363 50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENFDEN----AVRAQAEKMAQEQVARQV-----EMAKV 116 (166)
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCCCHH----HHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 89999999999999888866554432 334443 23333333221 23333344422 22222 35577
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccccc
Q 036441 320 MQQMYRVLTTRQAARALLALGEYFHRLRALSSLWA 354 (361)
Q Consensus 320 L~~l~~ILTp~QAA~fLlAl~e~~~rLR~Lsslw~ 354 (361)
-++|..||||-|-+.|=--.-+....+|.++.+=.
T Consensus 117 ~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~~q~ 151 (166)
T PRK10363 117 RNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQK 151 (166)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 78999999999999996555556666676664433
No 15
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=91.63 E-value=4.2 Score=37.20 Aligned_cols=100 Identities=23% Similarity=0.272 Sum_probs=63.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 036441 243 PLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQ 322 (361)
Q Consensus 243 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~ 322 (361)
+||++|...|..+....+....... .+ .-+.+-+.+.++++-+. .+...+++... .-..---.+.++..+
T Consensus 56 ~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FDea----Avra~~~kma~---~~~e~~v~~~~~~~q 125 (162)
T PRK12751 56 NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFDEA----AVRAQAEKMSQ---NQIERHVEMAKVRNQ 125 (162)
T ss_pred CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCCHH----HHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 8999999999998877776532111 11 22333444444444332 23333344322 111222256788999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q 036441 323 MYRVLTTRQAARALLALGEYFHRLRALSSL 352 (361)
Q Consensus 323 l~~ILTp~QAA~fLlAl~e~~~rLR~Lssl 352 (361)
++.+|||-|-+.|=--..+...++|.++.+
T Consensus 126 my~lLTPEQra~l~~~~e~r~~~~~~~~~~ 155 (162)
T PRK12751 126 MYNLLTPEQKEALNKKHQERIEKLQQKPAA 155 (162)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999988888888888886643
No 16
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=91.62 E-value=1.2 Score=35.34 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=45.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHH
Q 036441 239 PQLEPLTEQQLIDVCNLRQSSQQAEDAL---QQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHL 315 (361)
Q Consensus 239 ~~LepLTeqQl~~I~~LqqstqqaEdaL---sq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~L 315 (361)
..| +||++|...|..|....+..-..+ .+.+.++.. +. +...-..++.+++.+...-.+.-..
T Consensus 11 ~~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T PF07813_consen 11 EEL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-----------PS--FDEAAPEALAAMAEMMELRAEMMEE 76 (100)
T ss_dssp TTS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH-----------SS----HHHHHHHH--HHCHHHHHHHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-----------cc--CChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344 699999999999998888776666 222222222 00 0000111122223444444455556
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 036441 316 RQQTMQQMYRVLTTRQAARA 335 (361)
Q Consensus 316 R~qTL~~l~~ILTp~QAA~f 335 (361)
|..+...+..||||-|=+.|
T Consensus 77 ~~~~~~~~~~vLt~eQk~~~ 96 (100)
T PF07813_consen 77 RAKAQHALYAVLTPEQKEKF 96 (100)
T ss_dssp HHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 77888999999999998776
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.93 E-value=1 Score=43.80 Aligned_cols=45 Identities=38% Similarity=0.443 Sum_probs=37.0
Q ss_pred CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r 121 (361)
..+|++||=-+||=||..+|=||||-...+|- .+..|+.|-++.+
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~---~i~dL~een~~L~ 110 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEY---EIKDLTEENEILQ 110 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 46899999999999999999999999999988 5555655555443
No 18
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=77.77 E-value=5.7 Score=38.82 Aligned_cols=46 Identities=35% Similarity=0.380 Sum_probs=29.1
Q ss_pred CCChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 73 KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 73 ~~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r 121 (361)
+.+++-..|...|=+|+||||...|.=- .|. ..|...||.|.+..|
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~--~e~-~~r~~~leken~~lr 235 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKE--DEM-AHRVAELEKENEALR 235 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHH--HHH-HHHHHHHHHHHHHHH
Confidence 3567788899999999999998766432 222 224444444444333
No 19
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=69.00 E-value=17 Score=36.33 Aligned_cols=52 Identities=29% Similarity=0.361 Sum_probs=37.7
Q ss_pred cCCCChHHHHHHHhhHHH-HHHhhHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhh
Q 036441 71 ANKPSEKTQRRLAQNREA-ARKSRLRKKAYVQQLESS-----------RLKLAQLEQELDRARR 122 (361)
Q Consensus 71 ~~~~~~k~~rrlaqnrea-arksrlrkkayvq~le~s-----------r~kl~qleqel~~~r~ 122 (361)
..+.+.|++||=+|+|.+ |-+=|-||||=-|.|+.. |.++..||-|++.-||
T Consensus 220 ~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 220 PYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888887776665 888899999998888652 3345567788877774
No 20
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=53.40 E-value=1.2e+02 Score=25.74 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhhhchhhhccCCCCChHHHHHHHhccCCchhhHHh
Q 036441 181 RILVENGLNHYNNLFRMKA--DAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNI 236 (361)
Q Consensus 181 ~~LVd~~l~HY~e~f~~Ks--~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkL 236 (361)
+.+...+-..+..+|.+.+ ...+.| +|.++-+|-+|+|+..+..
T Consensus 68 ~k~f~~i~~~lk~~F~V~sY~~I~~kd------------fd~A~~~I~~W~p~~~l~~ 113 (116)
T PF10552_consen 68 RKLFSDIYRDLKRHFGVPSYKDIPRKD------------FDEALEFINNWEPSTALKM 113 (116)
T ss_pred HHHHHHHHHHHHHHhCCchHHhhhHHH------------HHHHHHHHHHcCCCHHHHH
Confidence 3467777777888887644 223455 8999999999999987754
No 21
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=46.17 E-value=63 Score=28.94 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=26.0
Q ss_pred CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHH
Q 036441 74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSR 107 (361)
Q Consensus 74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr 107 (361)
..-|-.||--.||-=|-.+|.+.=---.+||+-+
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k 83 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEK 83 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999988655555677633
No 22
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.19 E-value=1.8e+02 Score=30.04 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 252 VCNLRQSSQQAEDALQQGIDKLQQSL 277 (361)
Q Consensus 252 I~~LqqstqqaEdaLsq~ma~LQqsl 277 (361)
|..-++++..+++.|.+.+..||..+
T Consensus 244 L~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 44447788888999999999988654
No 23
>PRK11702 hypothetical protein; Provisional
Probab=39.61 E-value=14 Score=31.95 Aligned_cols=13 Identities=46% Similarity=0.698 Sum_probs=11.0
Q ss_pred HHhhHhHHHHHHH
Q 036441 90 RKSRLRKKAYVQQ 102 (361)
Q Consensus 90 rksrlrkkayvq~ 102 (361)
|+.|||||-||-.
T Consensus 5 RsRRlRKKL~v~E 17 (108)
T PRK11702 5 RSRRLRKKMHIDE 17 (108)
T ss_pred hhHHHHhhhhhHh
Confidence 6889999999754
No 24
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=38.06 E-value=3.4e+02 Score=27.36 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 179 ELRILVENGLNHYNNLFRMKADAA 202 (361)
Q Consensus 179 eL~~LVd~~l~HY~e~f~~Ks~aA 202 (361)
=|+..|+.-|..|.+-|+.-..+-
T Consensus 236 CL~dFVeaQmtyYAQcyq~MlDLQ 259 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQLMLDLQ 259 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999998755443
No 25
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.60 E-value=1.9e+02 Score=25.55 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=29.5
Q ss_pred HHHHhccCCchhhHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 221 FFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQ 274 (361)
Q Consensus 221 ~FLWiGGfRPS~llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQ 274 (361)
+++|.-||.=|.+.=+...+|.+=-..=-..+.++-.++..+-+.|+++++.+=
T Consensus 21 ~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd 74 (126)
T PF07889_consen 21 GYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVD 74 (126)
T ss_pred eeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998876654444332222222333334444444455555444443
No 26
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=37.59 E-value=74 Score=25.43 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 036441 303 EALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYF 343 (361)
Q Consensus 303 ~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLlAl~e~~ 343 (361)
+....++....+||-+.|+++.+--|-+++.|-++.+|+.+
T Consensus 21 e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl~lA~~~ 61 (69)
T PF11459_consen 21 EEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFLYLAERA 61 (69)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHHHHHHHc
Confidence 34466777778899999999999999999999999999865
No 27
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=36.07 E-value=35 Score=26.37 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 036441 109 KLAQLEQELDRAR 121 (361)
Q Consensus 109 kl~qleqel~~~r 121 (361)
+|.+.||+++.++
T Consensus 40 rL~~ae~ra~~ae 52 (60)
T PF11471_consen 40 RLQAAEQRAQAAE 52 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 28
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=33.99 E-value=53 Score=29.12 Aligned_cols=39 Identities=28% Similarity=0.580 Sum_probs=30.8
Q ss_pred HHHHhccCCchhhHHhhcCCCCCCcHHHHHHHHHHHHHHH
Q 036441 221 FFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQ 260 (361)
Q Consensus 221 ~FLWiGGfRPS~llkLL~~~LepLTeqQl~~I~~Lqqstq 260 (361)
.+.|+| .+|+++.++-.....|||+..+..+.+|..+..
T Consensus 89 ~l~~~G-~~~~d~~~~~~~~~~~Ls~~d~~~l~~ll~~~~ 127 (160)
T cd00223 89 DLRWLG-LRPSDIIRLPDLPLLPLSERDLKRAKSLLRRPR 127 (160)
T ss_pred CcEEcc-CCHHHHhhccccccCCCCHHHHHHHHHHHhccc
Confidence 466775 899999874445677999999999999888654
No 29
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=33.80 E-value=3.5e+02 Score=24.25 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=54.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccCCCCChHHHHHHHhccCCchhh--HHhhcCCCCC
Q 036441 176 TDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSEL--LNILMPQLEP 243 (361)
Q Consensus 176 ~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~l--lkLL~~~Lep 243 (361)
++.+...+..+-++....+-|.|..-+-.+|-.++++.-..++|.|.+ |-.-|-.+ -|-|.|+|+.
T Consensus 46 ~~~~~s~Vf~kTl~Y~~~FsRfKn~etv~avr~iLs~~~lhkFE~A~l--gnLcpetaEEAkaLvPSL~n 113 (134)
T KOG2351|consen 46 DESEMSDVFKKTLQYLDRFSRFKNRETVRAVRTILSGKGLHKFEVAQL--GNLCPETAEEAKALVPSLEN 113 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhCCcchhhHHHH--hccCcccHHHHHHhcccccc
Confidence 346788889999999999999999999999999999999999999864 87777644 3456788875
No 30
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=33.21 E-value=2e+02 Score=21.26 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 036441 144 PGITAFEMEYSHWVEEQNRQIYELR 168 (361)
Q Consensus 144 ~g~~~F~~~Y~~Wleeq~~~l~eLr 168 (361)
.++..|...|..|-....+....|.
T Consensus 44 ~a~~af~~~~~~~~~~~~~~~~~L~ 68 (86)
T PF06013_consen 44 EAADAFQDKFEEWNQAFRQLNEALE 68 (86)
T ss_dssp STSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999888777766663
No 31
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=32.44 E-value=3.2e+02 Score=23.34 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=58.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhccccc-cCCCCCCCCCCCC--CCcchhHHHHHHHHHHHHH-HHHHHHH
Q 036441 93 RLRKKAYVQQLESSRLKLAQLEQELDR-ARRQGIYTG-STSDGSHFGLSGN--INPGITAFEMEYSHWVEEQ-NRQIYEL 167 (361)
Q Consensus 93 rlrkkayvq~le~sr~kl~qleqel~~-~r~qg~~~~-~~~~~~~~~~~~~--~~~g~~~F~~~Y~~Wleeq-~~~l~eL 167 (361)
.-.=|+|-+.+.+ --.++.++|.+ |.+.|+-+. ...+..+-..-.. ..+| ..|+..|-..+..- .+.+..+
T Consensus 30 ~~~Vk~~A~~~~~---dh~~~~~~l~~la~~~~v~lp~~~~~~~~~~~l~~L~~~~g-~~FD~~yl~~~i~~h~~~l~~~ 105 (139)
T PF13628_consen 30 SPEVKAFAQQMVE---DHTQANQQLAALAAKKGVTLPPTALSAEQQAELDRLQKLSG-SAFDRAYLDAQIKAHEKALALF 105 (139)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcccccccHhhHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 3345699999988 55566677753 456777776 2211111000000 1123 78998777766554 4456666
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 036441 168 RNALQKHITDIELRILVENGLNHYNNLF 195 (361)
Q Consensus 168 r~AL~s~~~d~eL~~LVd~~l~HY~e~f 195 (361)
...+..+..|.+|+.++...+.-...+.
T Consensus 106 ~~~~~~~~~~~~lk~~a~~~lp~l~~hl 133 (139)
T PF13628_consen 106 EKQLAASGKDPELKAFAQETLPVLEAHL 133 (139)
T ss_pred HHHhhccCCCHHHHHHHHHHhHHHHHHH
Confidence 6645566678899998887765544443
No 32
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=28.90 E-value=67 Score=24.91 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 036441 100 VQQLESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 100 vq~le~sr~kl~qleqel~~~r~ 122 (361)
|..|+. ++..|+.|+.|+++
T Consensus 23 v~EL~~---RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 23 VEELEE---RIALLEAEIARLEA 42 (59)
T ss_pred HHHHHH---HHHHHHHHHHHHHH
Confidence 556666 77888888888774
No 33
>PF15219 TEX12: Testis-expressed 12
Probab=28.22 E-value=3.8e+02 Score=22.87 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036441 264 DALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQM 323 (361)
Q Consensus 264 daLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~l 323 (361)
+.++++|.-+--..|..+.........|+..++.-+..-.+||+|++|--..=+|+|.-|
T Consensus 35 ~d~skEinlmls~yA~ilSEraavd~syi~eiD~lfkEA~~lEnfLkqkre~LrQrlt~i 94 (100)
T PF15219_consen 35 NDMSKEINLMLSTYAKILSERAAVDASYITEIDGLFKEANALENFLKQKRECLRQRLTVI 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665433333446777777666777789999987765433444433
No 34
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=27.00 E-value=73 Score=33.04 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH-Hhhhhchh------hhccCCCCChHHHH-----HHHhccCCchhhHHhhcCCCCC
Q 036441 176 TDIELRILVENGLNHYNNLFRMKA-DAAKADVL------SLISGMWRTSTERF-----FQWIGGFRPSELLNILMPQLEP 243 (361)
Q Consensus 176 ~d~eL~~LVd~~l~HY~e~f~~Ks-~aA~~DVf------~llsg~W~tp~Er~-----FLWiGGfRPS~llkLL~~~Lep 243 (361)
+|--=|.+|..+...+. .+.- ...+.|++ .+..|..+...|.. ..||| .|||++.++=...+-|
T Consensus 246 PD~aTR~fL~~L~~~~p---~lPv~~LvD~DP~Gi~I~~tYkyGS~~~a~es~~la~~i~WLG-l~~sDi~~l~~~~~i~ 321 (384)
T PLN00060 246 PDLATRFILHRLSQTFP---NLPILALVDWNPAGLAILCTYKFGSIGMGLEAYRYACNVKWLG-LRGDDLQLIPPEAFVE 321 (384)
T ss_pred CCHHHHHHHHHHHHhcC---CCCEEEEECCCcchHHHHHHhhcCchhhhhcccccccCCeEec-CCHHHHhcCCHhhcCC
Confidence 35555666666554321 1111 22345552 23457776666632 68986 9999998732234569
Q ss_pred CcHHHHHHHHHHHHHH
Q 036441 244 LTEQQLIDVCNLRQSS 259 (361)
Q Consensus 244 LTeqQl~~I~~Lqqst 259 (361)
||+..+..+.+|-..-
T Consensus 322 Lt~rD~~~~~~lL~~~ 337 (384)
T PLN00060 322 LKPRDLQIAKSLLSSK 337 (384)
T ss_pred CCHHHHHHHHHHhhCh
Confidence 9999999998887653
No 35
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=25.90 E-value=1.1e+03 Score=27.35 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036441 164 IYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKAD 205 (361)
Q Consensus 164 l~eLr~AL~s~~~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~D 205 (361)
-..|+.||...++|.|+..|.+....--++|.+..+.-+..+
T Consensus 509 Q~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~ 550 (851)
T TIGR02302 509 QDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNN 550 (851)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 467888888999999999999999999999999887666554
No 36
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.83 E-value=3.6e+02 Score=23.88 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------hcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccCCCCChHHH
Q 036441 149 FEMEYSHWVEEQNRQIYELRNAL--------QKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTER 220 (361)
Q Consensus 149 F~~~Y~~Wleeq~~~l~eLr~AL--------~s~~~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er 220 (361)
|-.-|-+=+.-|.-+-.++|+-= .-|..-+ -..+..++.-+..|..+-+.-+. ..|.|+..
T Consensus 12 vrlLYkriLrlHr~lp~~~R~lGD~YVkdEFrrHk~vn--p~~~~~FlteW~~Ya~~l~qql~------~~g~~K~~--- 80 (125)
T KOG4100|consen 12 VRLLYKRILRLHRGLPAELRALGDQYVKDEFRRHKTVN--PLEAQGFLTEWERYAVALSQQLS------SAGKWKGE--- 80 (125)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHHHhh------hcCccccc---
Confidence 44466666655555555555431 0111100 12355677777777776554333 56888865
Q ss_pred HHHHhccCCchhhHHhhcCCCCCCcHHHHHHHHHHHHHHHH
Q 036441 221 FFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQ 261 (361)
Q Consensus 221 ~FLWiGGfRPS~llkLL~~~LepLTeqQl~~I~~Lqqstqq 261 (361)
+|-+=||+.+. .|+++|+..+++|.+..+.
T Consensus 81 ----~g~~ld~d~le-------~l~deqi~QLyELm~ea~k 110 (125)
T KOG4100|consen 81 ----IGSDLDSDKLE-------QLSDEQIGQLYELMKEAQK 110 (125)
T ss_pred ----ccccCCHHHHH-------HcCHHHHHHHHHHHHHHHh
Confidence 47677777664 6899999999999988875
No 37
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.83 E-value=1.6e+02 Score=27.66 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---------------hccccccCCCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHH
Q 036441 99 YVQQLESSRLKLAQLEQELDRARR---------------QGIYTGSTSDGSHFGLSGN-INPGITAFEMEYSHWVEEQNR 162 (361)
Q Consensus 99 yvq~le~sr~kl~qleqel~~~r~---------------qg~~~~~~~~~~~~~~~~~-~~~g~~~F~~~Y~~Wleeq~~ 162 (361)
=|+++|. -..+||++|++.=. +..|.++-.|..+-+.+++ +++.-..|-.....|...+..
T Consensus 3 ~~~~~E~---~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~ 79 (200)
T cd07637 3 TIDEVET---DVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMI 79 (200)
T ss_pred hHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777 77888888887322 2223322112111111121 222225788888888888777
Q ss_pred HHHHHHHHHhcC
Q 036441 163 QIYELRNALQKH 174 (361)
Q Consensus 163 ~l~eLr~AL~s~ 174 (361)
.+.+....+..+
T Consensus 80 l~~q~e~~l~~p 91 (200)
T cd07637 80 LFDQAQRSVRQQ 91 (200)
T ss_pred HHHHHHHHHHHH
Confidence 777766555443
No 38
>PF13586 DDE_Tnp_1_2: Transposase DDE domain
Probab=25.76 E-value=31 Score=27.43 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHhccCCc
Q 036441 213 MWRTSTERFFQWIGGFRP 230 (361)
Q Consensus 213 ~W~tp~Er~FLWiGGfRP 230 (361)
..+.-.||+|-||.+||-
T Consensus 45 ~~Rw~VEr~f~wlk~~Rr 62 (88)
T PF13586_consen 45 KRRWVVERTFAWLKRFRR 62 (88)
T ss_pred ccceehhhhhHHHHHcCc
Confidence 444569999999999974
No 39
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=25.70 E-value=6.7e+02 Score=24.87 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 036441 294 QMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHR 345 (361)
Q Consensus 294 qm~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLlAl~e~~~r 345 (361)
-++.+-.++..|...+.+++..-.+++.-.-+-=+....-+|+--+.+|...
T Consensus 317 f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~ 368 (370)
T PF02181_consen 317 FLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDM 368 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 3566668889999999999988888877775444455667777777776543
No 40
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=24.64 E-value=2.8e+02 Score=26.90 Aligned_cols=89 Identities=21% Similarity=0.310 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHhhhhchhhhccCCCCChHHHHHHHhccCCchhhHHhhcCCCCCCcH
Q 036441 179 ELRILVENGLNHYNNLFR------------MKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTE 246 (361)
Q Consensus 179 eL~~LVd~~l~HY~e~f~------------~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkLL~~~LepLTe 246 (361)
.+|..||.+.+.|+-++. +|..+++.|-- .+...++.++-=..=.|||..+ ++++
T Consensus 80 ~~RLavDAl~~~~qPLW~~~e~~i~~~~~~mk~a~~~~~~~-----~f~~~~n~f~~~y~~I~Psl~I--------~~~~ 146 (232)
T PF09577_consen 80 QFRLAVDALTHKHQPLWLQYEKPIMEDFQRMKQAAQKGDKE-----AFRASLNEFLSHYELIRPSLTI--------DRPP 146 (232)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHhcchhhc--------cCCH
Confidence 588999999766543332 56666665532 2345566666666667788666 4678
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 036441 247 QQLIDVCNLRQSSQQ------AEDALQQGIDKLQQSLVQI 280 (361)
Q Consensus 247 qQl~~I~~Lqqstqq------aEdaLsq~ma~LQqslad~ 280 (361)
+++.+|+..-.-+.. ......+.+..+..++...
T Consensus 147 ~~v~~v~s~i~yl~~~~~~~~~~~~~~~~l~~le~~l~~l 186 (232)
T PF09577_consen 147 EQVQRVDSHISYLERLRFQQLDQKEVQEALEQLEEDLQKL 186 (232)
T ss_pred HHHHHHHHHHHHHHHhhhcccChHHHHHHHHHHHHHHHHH
Confidence 888777654433332 2334444455555444443
No 41
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.41 E-value=1.4e+02 Score=28.70 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=23.6
Q ss_pred hhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 84 QNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD 118 (361)
Q Consensus 84 qnreaarksrlrkkayvq~le~sr~kl~qleqel~ 118 (361)
+|.-+|-.+=-|||.|-|||+-----|+.||+.+.
T Consensus 58 kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~ 92 (221)
T KOG1656|consen 58 KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555666667899999888765555666666544
No 42
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.35 E-value=87 Score=31.78 Aligned_cols=47 Identities=34% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCChHHHHH-HHhhHHH-----HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 73 KPSEKTQRR-LAQNREA-----ARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119 (361)
Q Consensus 73 ~~~~k~~rr-laqnrea-----arksrlrkkayvq~le~sr~kl~qleqel~~ 119 (361)
..|-|.+|. +|..|-. +|..==.|..||.|||..+-|..|||-+++.
T Consensus 99 qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 99 QGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred hchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788876 6655432 2222235679999999999999999999984
No 43
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.82 E-value=2.2e+02 Score=24.31 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 80 RRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119 (361)
Q Consensus 80 rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~ 119 (361)
==++|||-++| .|+|-+-=.|-=+-+......|-.+|+.
T Consensus 53 IlmsQNRq~~~-dr~ra~~D~~inl~ae~ei~~l~~~l~~ 91 (108)
T PF06210_consen 53 ILMSQNRQAAR-DRLRAELDYQINLKAEQEIERLHRKLDA 91 (108)
T ss_pred HHHHhhHhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34679998877 5666554444333344455555555543
No 44
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=23.39 E-value=92 Score=25.45 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccc
Q 036441 101 QQLESSRLKLAQLEQELDRARRQGIYTG 128 (361)
Q Consensus 101 q~le~sr~kl~qleqel~~~r~qg~~~~ 128 (361)
|.||.++..+..||||+.+-|=-=+|+-
T Consensus 33 ~eLerCK~sirrLeqevnkERFrmiYLQ 60 (79)
T PF09036_consen 33 QELERCKASIRRLEQEVNKERFRMIYLQ 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999987775556653
No 45
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=23.22 E-value=36 Score=28.46 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=13.0
Q ss_pred HHHHhccCCchhhHHhhcC
Q 036441 221 FFQWIGGFRPSELLNILMP 239 (361)
Q Consensus 221 ~FLWiGGfRPS~llkLL~~ 239 (361)
.+++.+|+||+|++.|=..
T Consensus 28 ~l~~~tG~R~~El~~l~~~ 46 (173)
T PF00589_consen 28 LLLLYTGLRPSELLRLRWD 46 (173)
T ss_dssp HHHHHHT--HHHHHT-BGG
T ss_pred HHHHHHccchhhhhhhhhh
Confidence 4678899999999987654
No 46
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=22.89 E-value=2.7e+02 Score=23.42 Aligned_cols=41 Identities=34% Similarity=0.409 Sum_probs=23.7
Q ss_pred HhhHHHHHHhh-HhHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 036441 83 AQNREAARKSR-LRKKAYVQQ-LESSRLKLAQLEQELDRARRQ 123 (361)
Q Consensus 83 aqnreaarksr-lrkkayvq~-le~sr~kl~qleqel~~~r~q 123 (361)
.+|+|-+..-- |.++..-+. -+..+-+|..++.+++..|+.
T Consensus 31 ~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 31 RRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 45666555433 222222211 245566888899999988874
No 47
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=22.85 E-value=2.3e+02 Score=24.83 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=27.9
Q ss_pred hhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 84 QNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 84 qnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~ 122 (361)
...-++||++.+....-+.||+=+.++..|++++++-.+
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555566777776666667777777799999988886543
No 48
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.84 E-value=3.8e+02 Score=25.76 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=26.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 241 LEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITE 283 (361)
Q Consensus 241 LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa 283 (361)
++|+-.+++.+. .+..-..+.+++.++|+.+|+.+..
T Consensus 127 ~Gdv~A~~~~~~------l~~~~~~l~~~~~~~q~~~Ae~iTE 163 (204)
T COG3165 127 FGDVAAQSVVRA------LRSGSRFLKHGLKQLQRNLAEAITE 163 (204)
T ss_pred hcchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555655544 5556667899999999999999853
No 49
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=22.63 E-value=5e+02 Score=28.19 Aligned_cols=100 Identities=28% Similarity=0.401 Sum_probs=66.2
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 91 KSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNA 170 (361)
Q Consensus 91 ksrlrkkayvq~le~sr~kl~qleqel~~~r~qg~~~~~~~~~~~~~~~~~~~~g~~~F~~~Y~~Wleeq~~~l~eLr~A 170 (361)
|-+=|-|-.|+||-+ .|..||+- .|=.|. |..+... -++.|+-.+.|||.-
T Consensus 142 kq~e~qkeLi~QLk~---Ql~dLE~~--------AYe~Ge--------------g~LPq~v----iLekQk~ilDeLr~K 192 (621)
T KOG3759|consen 142 KQNERQKELIKQLKE---QLEDLERT--------AYENGE--------------GELPQTV----ILEKQKAILDELREK 192 (621)
T ss_pred hhcchHHHHHHHHHH---HHHHHHHH--------HHhcCC--------------CcCchHH----HHHHHHHHHHHHHHH
Confidence 444577888999887 67666653 233221 2222222 356677889999999
Q ss_pred HhcC-----CCchHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccCCCCChHHHHHHHh
Q 036441 171 LQKH-----ITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWI 225 (361)
Q Consensus 171 L~s~-----~~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWi 225 (361)
|+-+ .+-.||+.-||..+..+-.-|++|.-+...=- +=.|-+||+.-+|
T Consensus 193 l~lnl~i~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLk------TQItDLErFInFl 246 (621)
T KOG3759|consen 193 LELNLDIDKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLK------TQITDLERFINFL 246 (621)
T ss_pred hhccCCcccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 8643 34679999999999999999999986542110 1134578876665
No 50
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=22.12 E-value=2e+02 Score=27.13 Aligned_cols=37 Identities=30% Similarity=0.295 Sum_probs=28.3
Q ss_pred HHhhH-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 82 LAQNR-EAARKSRLRKKAYVQQLESSRLKLAQLEQELD 118 (361)
Q Consensus 82 laqnr-eaarksrlrkkayvq~le~sr~kl~qleqel~ 118 (361)
+.+|. .+|-..=.|||.|-++|+..--.+..|||-+.
T Consensus 61 ~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 61 VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 36777777889999999998888888887654
No 51
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.91 E-value=5.3e+02 Score=25.01 Aligned_cols=15 Identities=40% Similarity=0.476 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhccc
Q 036441 338 ALGEYFHRLRALSSL 352 (361)
Q Consensus 338 Al~e~~~rLR~Lssl 352 (361)
+..++..|+.+|..|
T Consensus 240 ~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 240 ANDGFLARLEALWEL 254 (301)
T ss_pred cCCCHHHHHHHHHHH
Confidence 344466666666554
No 52
>PRK14563 ribosome modulation factor; Provisional
Probab=21.74 E-value=25 Score=27.01 Aligned_cols=7 Identities=71% Similarity=1.958 Sum_probs=5.0
Q ss_pred HHhccCC
Q 036441 223 QWIGGFR 229 (361)
Q Consensus 223 LWiGGfR 229 (361)
.||||||
T Consensus 39 ~Wl~GWR 45 (55)
T PRK14563 39 QWLGGWR 45 (55)
T ss_pred HHHHHHH
Confidence 6777776
No 53
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.48 E-value=9.7e+02 Score=27.14 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hh-hchhhhccCCCCChHHHHHHHhccCCchhhHHhhcCCCC---------CCcH
Q 036441 179 ELRILVENGLNHYNNLFRMKADA--AK-ADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLE---------PLTE 246 (361)
Q Consensus 179 eL~~LVd~~l~HY~e~f~~Ks~a--A~-~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkLL~~~Le---------pLTe 246 (361)
-|+.+++..+.|=.+++..+... .+ .+=.|++.| +-.+|+=|- ++++++..+-+ .||+
T Consensus 338 ~l~~il~~~~~~R~~~~~rR~~~~l~k~~~rl~il~G-----l~ia~~~iD-----evI~iIR~s~~~k~~L~~~f~ls~ 407 (735)
T TIGR01062 338 NLLEILQEWLVFRRNTVIRRLTYRLNKVLQRLHILEG-----LRIAFLNID-----EVIEIIREEDEPKTILMERFKLSA 407 (735)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHH-----HHHHHHHcChhhHHHHHHhcCCCH
Confidence 47888888888888888765422 22 334444322 223444443 77777765433 4999
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 247 QQLIDVCN--LRQSSQQAEDALQQGIDKLQQSLVQI 280 (361)
Q Consensus 247 qQl~~I~~--LqqstqqaEdaLsq~ma~LQqslad~ 280 (361)
.|...|=+ |++=++-++.+|.+++++|+...++.
T Consensus 408 ~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l 443 (735)
T TIGR01062 408 IQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAIL 443 (735)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99998854 45566778888988888888777665
No 54
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=20.82 E-value=1.2e+02 Score=30.07 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHH
Q 036441 147 TAFEMEYSHWVEEQNRQIYELRNA-LQKHITDIELRILVENGLNHYN 192 (361)
Q Consensus 147 ~~F~~~Y~~Wleeq~~~l~eLr~A-L~s~~~d~eL~~LVd~~l~HY~ 192 (361)
..|++||+.|+.|+.....|++.- +..+.. -.||..|.-+|.
T Consensus 76 ~~~defyEd~f~E~~~kygEiee~~Vc~Nl~----~hl~GNVYV~f~ 118 (260)
T KOG2202|consen 76 RHEDEFYEDVFTELEDKYGEIEELNVCDNLG----DHLVGNVYVKFR 118 (260)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcccc----hhhhhhhhhhcc
Confidence 669999999999999888888776 333332 246777766654
No 55
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=20.56 E-value=7.8e+02 Score=23.78 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhccccccCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036441 113 LEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQK 173 (361)
Q Consensus 113 leqel~~~r~qg~~~~~~~~~~~~~~~~~~~~g~~~F~~~Y~~Wleeq~~~l~eLr~AL~s 173 (361)
+|+..+.|+++|.--|- .-|-..+...|..|+++....+..+......
T Consensus 112 ~e~~~~~a~~eGy~eG~-------------~~g~~e~~~e~~~~~~~l~~~~~~l~~~~~~ 159 (281)
T PRK06669 112 LERLIEEAKAEGYEEGY-------------EKGREEGLEEVRELIEQLNKIIEKLIKKREE 159 (281)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777744332 2356677788888988887777766544433
No 56
>PHA03395 p10 fibrous body protein; Provisional
Probab=20.54 E-value=4.7e+02 Score=21.94 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 036441 258 SSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTT 329 (361)
Q Consensus 258 stqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp 329 (361)
-++.+-.++++.+..||+.+.+.-. . ...+.+--+||.++-.-+.-.+ .++..+.+||+|
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~--n------lpdv~~l~~kLdaq~~~Ltti~----tkv~~I~diLnp 67 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRA--N------LPDVTEINEKLDAQSASLDTIS----SAVDNITDILNP 67 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--c------CCcHHHHHHHHHhHHHHHHHHH----HHHHHHHHccCC
Confidence 4677888999999999998887742 1 1112222255555555443333 556677888886
No 57
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=20.21 E-value=3.2e+02 Score=25.79 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccCCCCChHHHHHHHhccCCchh
Q 036441 157 VEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSE 232 (361)
Q Consensus 157 leeq~~~l~eLr~AL~s~~~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~ 232 (361)
+.+.+..+.++......- ...-++.+++.+..|+..++..-..++.=|++.-+ =.+-.+.+++||.-
T Consensus 223 ~~~l~~~~~~~~~~~~~~-~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~--------a~~a~~~~~~~P~i 289 (308)
T smart00533 223 LKELENELLEAKEEIERL-EKEILRELLEKVLEYLEELRALAEALAELDVLLSL--------ATLAAEGNYVRPEF 289 (308)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHCCCcCCee
Confidence 334455555554444321 12347889999999999999999999999987754 22335678888873
No 58
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.21 E-value=1.2e+02 Score=23.36 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 036441 103 LESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 103 le~sr~kl~qleqel~~~r~ 122 (361)
+|. ||.+||+.|+.+.+
T Consensus 30 iEq---RLa~LE~rL~~ae~ 46 (60)
T PF11471_consen 30 IEQ---RLAALEQRLQAAEQ 46 (60)
T ss_pred HHH---HHHHHHHHHHHHHH
Confidence 555 88888888887764
Done!