Query 036441
Match_columns 361
No_of_seqs 180 out of 245
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.0 3.1E-10 1.1E-14 84.5 5.9 44 77-123 1-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.6 7.8E-08 2.7E-12 73.3 5.6 43 74-119 6-48 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.3 7E-07 2.4E-11 67.4 5.9 40 77-119 1-40 (62)
4 2wt7_A Proto-oncogene protein 98.3 1.3E-06 4.5E-11 66.2 6.5 40 77-119 2-41 (63)
5 1t2k_D Cyclic-AMP-dependent tr 98.2 1.5E-06 5.2E-11 65.3 5.9 38 78-118 2-39 (61)
6 1gd2_E Transcription factor PA 98.0 6.8E-06 2.3E-10 64.0 5.0 39 78-119 9-47 (70)
7 2y39_A Nickel and cobalt resis 97.4 0.002 6.9E-08 54.7 11.9 96 236-342 14-112 (118)
8 1ci6_A Transcription factor AT 97.2 0.00039 1.3E-08 52.7 4.8 39 77-118 2-40 (63)
9 3a5t_A Transcription factor MA 96.3 0.0012 4.2E-08 55.1 1.6 45 76-123 36-80 (107)
10 1gu4_A CAAT/enhancer binding p 95.7 0.035 1.2E-06 43.8 7.3 34 72-105 10-43 (78)
11 1hjb_A Ccaat/enhancer binding 94.9 0.076 2.6E-06 42.7 7.3 33 73-105 11-43 (87)
12 3itf_A Periplasmic adaptor pro 94.6 0.15 5E-06 44.4 8.8 99 240-350 43-142 (145)
13 2wt7_B Transcription factor MA 91.3 0.51 1.7E-05 38.2 6.7 44 75-121 25-68 (90)
14 3lay_A Zinc resistance-associa 85.2 6.3 0.00022 35.1 10.3 76 242-324 66-141 (175)
15 3oeo_A Spheroplast protein Y; 85.1 0.25 8.4E-06 42.3 1.0 99 238-347 29-127 (138)
16 1skn_P DNA-binding domain of S 81.4 0.72 2.5E-05 37.4 2.3 29 76-104 61-89 (92)
17 3o39_A Periplasmic protein rel 79.9 2 6.9E-05 35.5 4.5 83 243-336 17-100 (108)
18 2ksd_A Aerobic respiration con 66.3 0.25 8.7E-06 41.6 -4.2 30 99-128 76-105 (115)
19 2er8_A Regulatory protein Leu3 65.1 3.5 0.00012 30.4 2.3 23 96-121 47-69 (72)
20 2c9l_Y EB1, zebra, BZLF1 trans 63.8 8.5 0.00029 28.5 4.1 38 81-121 5-42 (63)
21 1zme_C Proline utilization tra 62.7 7.1 0.00024 28.3 3.6 24 96-122 42-65 (70)
22 2kz5_A Transcription factor NF 56.3 2 6.7E-05 34.8 -0.4 21 77-97 66-86 (91)
23 1hwt_C Protein (heme activator 54.6 5.8 0.0002 29.6 2.0 27 91-120 51-77 (81)
24 3he4_B Synzip5; heterodimeric 52.1 20 0.00067 24.9 4.1 26 97-122 9-34 (46)
25 4i0x_B ESAT-6-like protein MAB 44.7 88 0.003 24.3 7.6 48 98-163 25-72 (103)
26 1hlo_A Protein (transcription 41.7 17 0.00058 27.8 2.8 24 98-124 57-80 (80)
27 3plt_A Sphingolipid long chain 41.3 40 0.0014 31.4 5.8 42 84-125 100-148 (234)
28 2ke4_A CDC42-interacting prote 40.1 1.4E+02 0.0049 23.9 9.1 42 241-283 8-54 (98)
29 1k1f_A Breakpoint cluster regi 39.0 22 0.00076 27.3 3.0 28 101-128 33-60 (72)
30 4abm_A Charged multivesicular 37.6 55 0.0019 25.3 5.2 36 83-118 41-76 (79)
31 1pyi_A Protein (pyrimidine pat 36.4 27 0.00094 26.7 3.3 21 97-120 47-67 (96)
32 3coq_A Regulatory protein GAL4 34.5 33 0.0011 25.7 3.5 21 97-120 44-64 (89)
33 2oqq_A Transcription factor HY 29.7 24 0.00082 24.7 1.7 10 97-106 2-11 (42)
34 1go4_E MAD1 (mitotic arrest de 29.0 1.4E+02 0.0049 24.2 6.5 73 93-172 16-92 (100)
35 3i00_A HIP-I, huntingtin-inter 26.3 51 0.0017 27.6 3.5 28 93-123 35-62 (120)
36 3e1r_A Centrosomal protein of 25.9 43 0.0015 24.9 2.5 25 95-122 31-55 (58)
37 3obv_E Protein diaphanous homo 24.7 4.1E+02 0.014 26.4 10.4 52 295-346 325-376 (457)
38 1gmj_A ATPase inhibitor; coile 23.1 1.6E+02 0.0056 23.3 5.6 27 94-121 45-71 (84)
39 1v9d_A Diaphanous protein homo 22.8 4.8E+02 0.016 24.5 10.5 42 147-188 100-141 (340)
40 2j1d_G DAAM1, disheveled-assoc 22.1 5.9E+02 0.02 25.3 13.9 82 265-346 303-388 (483)
41 1s16_A Topoisomerase IV subuni 21.8 23 0.0008 34.8 0.6 15 83-97 376-390 (390)
42 1d66_A Protein (GAL4); protein 21.8 28 0.00095 24.6 0.9 15 97-114 51-65 (66)
43 3a2a_A Voltage-gated hydrogen 21.7 74 0.0025 23.5 3.1 21 98-121 25-45 (58)
44 1nkp_B MAX protein, MYC proto- 21.4 73 0.0025 24.2 3.3 23 98-123 47-69 (83)
45 3hd7_A Vesicle-associated memb 21.3 2.4E+02 0.008 22.0 6.3 17 306-322 50-66 (91)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.03 E-value=3.1e-10 Score=84.47 Aligned_cols=44 Identities=45% Similarity=0.617 Sum_probs=40.0
Q ss_pred HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441 77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123 (361)
Q Consensus 77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~q 123 (361)
|-.+|+..|||+|+.||.|||+||+.||. ++.+|+.|-...+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999 899999998877765
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.56 E-value=7.8e-08 Score=73.29 Aligned_cols=43 Identities=37% Similarity=0.421 Sum_probs=31.5
Q ss_pred CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119 (361)
Q Consensus 74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~ 119 (361)
++|+..+|-++||||||+||.||++|+..||. ++.+|+.|-..
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~eN~~ 48 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSKNYH 48 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 35566677788999999999999999999999 66665555443
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.34 E-value=7e-07 Score=67.41 Aligned_cols=40 Identities=38% Similarity=0.462 Sum_probs=33.3
Q ss_pred HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119 (361)
Q Consensus 77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~ 119 (361)
|..||...||+||+|||.|||.|++.||. ++..|+.+-..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~n~~ 40 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQNSE 40 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45789999999999999999999999999 66666555443
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.29 E-value=1.3e-06 Score=66.21 Aligned_cols=40 Identities=33% Similarity=0.416 Sum_probs=33.9
Q ss_pred HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119 (361)
Q Consensus 77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~ 119 (361)
|-.+|+-.||+||+|||.|||.|++.||. ++.+|+.+-..
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~n~~ 41 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDEKSA 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 56899999999999999999999999999 66666655443
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.24 E-value=1.5e-06 Score=65.28 Aligned_cols=38 Identities=37% Similarity=0.490 Sum_probs=32.0
Q ss_pred HHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 78 TQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD 118 (361)
Q Consensus 78 ~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~ 118 (361)
-.+|+..||+||.|||.|||.|++.||. ++..|+.+-.
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~---~~~~L~~~n~ 39 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4689999999999999999999999999 6655555543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.98 E-value=6.8e-06 Score=63.96 Aligned_cols=39 Identities=33% Similarity=0.442 Sum_probs=34.5
Q ss_pred HHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 78 TQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119 (361)
Q Consensus 78 ~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~ 119 (361)
..+|-||||+|+|-.|-||++||..||. ++.+||.+.+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~ 47 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS 47 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4688899999999999999999999999 88888776553
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.40 E-value=0.002 Score=54.69 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=75.4
Q ss_pred hhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHH
Q 036441 236 ILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHL 315 (361)
Q Consensus 236 LL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~L 315 (361)
+|...| +||++|-..|..+...-.....+|.++|......|++.+.+ +..|+..+..|++.+-. ..-.|
T Consensus 14 ~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~----~~~~~p~V~aaid~~h~------~mG~L 82 (118)
T 2y39_A 14 ILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAK----NPAWSPEVEAATQEVER------AAGDL 82 (118)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCSCCHHHHHHHHHHHH------HHHHH
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHHH------HHHHH
Confidence 444555 89999999999999999999999999999999999998743 22366678777755433 33347
Q ss_pred HHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q 036441 316 RQQT---MQQMYRVLTTRQAARALLALGEY 342 (361)
Q Consensus 316 R~qT---L~~l~~ILTp~QAA~fLlAl~e~ 342 (361)
+..| +-.|..||||-|+..|=-.+.+-
T Consensus 83 QkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 83 QRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888 55678999999999997666553
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=97.20 E-value=0.00039 Score=52.69 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=28.2
Q ss_pred HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD 118 (361)
Q Consensus 77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~ 118 (361)
|-.|+.-+||.||+++|.|||.+++.||. ++.+|+++-.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~---~~~~L~~~N~ 40 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTG---ECKELEKKNE 40 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45678889999999999999999999999 6666655544
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=96.27 E-value=0.0012 Score=55.10 Aligned_cols=45 Identities=29% Similarity=0.436 Sum_probs=37.8
Q ss_pred hHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441 76 EKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123 (361)
Q Consensus 76 ~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~q 123 (361)
-|-.||--.||++|++||.||.+.+..||. .+.+|.+|+++.++.
T Consensus 36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~e~L~~E 80 (107)
T 3a5t_A 36 LKQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEVEKLASE 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTTTTTTST
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 478899999999999999999999999998 677777766655443
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=95.65 E-value=0.035 Score=43.84 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441 72 NKPSEKTQRRLAQNREAARKSRLRKKAYVQQLES 105 (361)
Q Consensus 72 ~~~~~k~~rrlaqnreaarksrlrkkayvq~le~ 105 (361)
.+.|++-..|-..|.+||+|||-.+|.-.+.++.
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~ 43 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH 43 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999888865
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=94.94 E-value=0.076 Score=42.70 Aligned_cols=33 Identities=30% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCChHHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441 73 KPSEKTQRRLAQNREAARKSRLRKKAYVQQLES 105 (361)
Q Consensus 73 ~~~~k~~rrlaqnreaarksrlrkkayvq~le~ 105 (361)
+-|++-..|-..|.+||||||-.+|.=.+.++.
T Consensus 11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~ 43 (87)
T 1hjb_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH 43 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999987777754
No 12
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=94.59 E-value=0.15 Score=44.45 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=60.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036441 240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQ-GIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQ 318 (361)
Q Consensus 240 ~LepLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~q 318 (361)
.| +||++|..+|..|....+.+...+.. .++ .+-+.+.++.+-. ..+.. .++.+...-.+.--.|.+
T Consensus 43 ~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~fDe----aa~ra---l~~~~~~~~~e~~v~r~k 110 (145)
T 3itf_A 43 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENFDE----NAVRA---QAEKMANEQIARQVEMAK 110 (145)
T ss_dssp TC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSCCH----HHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCCCH----HHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44 79999999999999888876554431 222 2323322111111 11222 223333334444446788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Q 036441 319 TMQQMYRVLTTRQAARALLALGEYFHRLRALS 350 (361)
Q Consensus 319 TL~~l~~ILTp~QAA~fLlAl~e~~~rLR~Ls 350 (361)
+-.+|..||||-|-+.|---..+-...++.++
T Consensus 111 ~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~ 142 (145)
T 3itf_A 111 VRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVT 142 (145)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999998877666655555544
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=91.34 E-value=0.51 Score=38.20 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=35.0
Q ss_pred ChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 75 SEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 75 ~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r 121 (361)
.-|-.||=-+||-+|..||-||-.-+..||. ...+|..|++..+
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~---e~~~L~~e~~~L~ 68 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLEN---EKTQLIQQVEQLK 68 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4577899999999999999999999999998 5555555555444
No 14
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=85.22 E-value=6.3 Score=35.11 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 036441 242 EPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQ 321 (361)
Q Consensus 242 epLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ 321 (361)
-+||++|..+|..|.++-+..-.+|.+.|...++.+-+.+.++.+-. ..+.....++..|.. +-...|.+.-.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De----akI~aL~~Ei~~Lr~---qL~~~R~k~~~ 138 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT----AKINAVAKEMESLGQ---KLDEQRVKRDV 138 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 37999999999999999999999999999999988877764322221 223322233333333 33445666655
Q ss_pred HHH
Q 036441 322 QMY 324 (361)
Q Consensus 322 ~l~ 324 (361)
+|.
T Consensus 139 em~ 141 (175)
T 3lay_A 139 AMA 141 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 15
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=85.11 E-value=0.25 Score=42.35 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=53.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 036441 238 MPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQ 317 (361)
Q Consensus 238 ~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~ 317 (361)
...| +||++|...|..|.+..+..-.. .+....+.+.+.+.++.+-. ..+...+++ +...-.+.--.|.
T Consensus 29 ~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~fDe----aav~al~~~---~~~~~~e~~~~~~ 97 (138)
T 3oeo_A 29 FKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTFDK----VKAEAQIAK---MEEQRKANMLAHM 97 (138)
T ss_dssp -CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSCCH----HHHHHHHGG---GSHHHHHHHHHHH
T ss_pred HhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCCH----HHHHHHHHH---HHHHHHHHHHHHH
Confidence 3455 79999999999998777654221 11122233333332221111 122222222 2333334444678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 036441 318 QTMQQMYRVLTTRQAARALLALGEYFHRLR 347 (361)
Q Consensus 318 qTL~~l~~ILTp~QAA~fLlAl~e~~~rLR 347 (361)
++..+|..||||-|-+.|---+.+-..+++
T Consensus 98 ~~~~~~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 98 ETQNKIYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999998877666554444
No 16
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=81.36 E-value=0.72 Score=37.36 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.3
Q ss_pred hHHHHHHHhhHHHHHHhhHhHHHHHHHHH
Q 036441 76 EKTQRRLAQNREAARKSRLRKKAYVQQLE 104 (361)
Q Consensus 76 ~k~~rrlaqnreaarksrlrkkayvq~le 104 (361)
.+-.||=..||.||++||.||..-+..||
T Consensus 61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 46678889999999999999987665554
No 17
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=79.86 E-value=2 Score=35.49 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 036441 243 PLTEQQLIDVCNLRQSSQQAEDALQ-QGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQ 321 (361)
Q Consensus 243 pLTeqQl~~I~~LqqstqqaEdaLs-q~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ 321 (361)
+||++|...|..|....+..-.... ...+ .+-+.+.++.+-+. .+..-++++. ..-.+.--.|.++=.
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~FDEa----aar~l~~~~~---~~~~e~~v~~~r~~~ 85 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTFDKA----KAEAQIAKME---EQRKANMLAHMETQN 85 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSCCHH----HHHHHHHHTH---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCCCHH----HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 7999999999999887766533222 1122 23333332222221 1222223322 111222224667788
Q ss_pred HHHhcCCHHHHHHHH
Q 036441 322 QMYRVLTTRQAARAL 336 (361)
Q Consensus 322 ~l~~ILTp~QAA~fL 336 (361)
+|..||||-|-+.|-
T Consensus 86 qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 86 KIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHTTSCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999998864
No 18
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=66.25 E-value=0.25 Score=41.65 Aligned_cols=30 Identities=37% Similarity=0.536 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 036441 99 YVQQLESSRLKLAQLEQELDRARRQGIYTG 128 (361)
Q Consensus 99 yvq~le~sr~kl~qleqel~~~r~qg~~~~ 128 (361)
-|+|||.||.+|+++=.+|+++|+|..+..
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999988774
No 19
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=65.13 E-value=3.5 Score=30.36 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 96 KKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 96 kkayvq~le~sr~kl~qleqel~~~r 121 (361)
++.||++||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999999 9999999998654
No 20
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=63.84 E-value=8.5 Score=28.54 Aligned_cols=38 Identities=45% Similarity=0.397 Sum_probs=22.8
Q ss_pred HHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 81 RLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 81 rlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r 121 (361)
+--.||-|+||||.+=| ++||--|---+---.|-+|.|
T Consensus 5 kryknr~asrk~rakfk---n~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFK---QLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccchHHH
Confidence 34579999999999855 455544433333333444444
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.68 E-value=7.1 Score=28.33 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 96 KKAYVQQLESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 96 kkayvq~le~sr~kl~qleqel~~~r~ 122 (361)
++.||+.||. ++.+||+.|...+.
T Consensus 42 ~~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3579999999 99999999987664
No 22
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=56.26 E-value=2 Score=34.79 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=18.1
Q ss_pred HHHHHHHhhHHHHHHhhHhHH
Q 036441 77 KTQRRLAQNREAARKSRLRKK 97 (361)
Q Consensus 77 k~~rrlaqnreaarksrlrkk 97 (361)
+-.||=..||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 456888999999999999974
No 23
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=54.60 E-value=5.8 Score=29.64 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.2
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 91 KSRLRKKAYVQQLESSRLKLAQLEQELDRA 120 (361)
Q Consensus 91 ksrlrkkayvq~le~sr~kl~qleqel~~~ 120 (361)
+.++.++.||+.||. +|.+||..|...
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC---
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHh
Confidence 345667789999999 999999888754
No 24
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.13 E-value=20 Score=24.88 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 97 KAYVQQLESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 97 kayvq~le~sr~kl~qleqel~~~r~ 122 (361)
|-|||.||..-..|..|..-|.-|+.
T Consensus 9 knyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 68999999988888888777776663
No 25
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=44.67 E-value=88 Score=24.28 Aligned_cols=48 Identities=17% Similarity=0.419 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 036441 98 AYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQ 163 (361)
Q Consensus 98 ayvq~le~sr~kl~qleqel~~~r~qg~~~~~~~~~~~~~~~~~~~~g~~~F~~~Y~~Wleeq~~~ 163 (361)
.+..+|+. .|.+|+..++.....|..-| .....|...+.+|-....+.
T Consensus 25 ~~~~~i~~---~l~~L~~~v~~L~~~g~W~G---------------~A~~ay~~~~~~W~~~a~~l 72 (103)
T 4i0x_B 25 GFKEFVTE---NLDQLESRAQKLVQSGQWAG---------------AAAAAYSQAHKEWMDAAREL 72 (103)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCCeec---------------hHHHHHHHHHHHHHHHHHHH
Confidence 77788888 89999999998776664544 25789999999997766554
No 26
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.74 E-value=17 Score=27.78 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036441 98 AYVQQLESSRLKLAQLEQELDRARRQG 124 (361)
Q Consensus 98 ayvq~le~sr~kl~qleqel~~~r~qg 124 (361)
.||..|+. ++..|+.|++..|+|+
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 69999999 8899999999888764
No 27
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=41.31 E-value=40 Score=31.41 Aligned_cols=42 Identities=36% Similarity=0.461 Sum_probs=28.0
Q ss_pred hhHHHH-HHhhHhHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcc
Q 036441 84 QNREAA-RKSRLRKKAYVQQLESSR------LKLAQLEQELDRARRQGI 125 (361)
Q Consensus 84 qnreaa-rksrlrkkayvq~le~sr------~kl~qleqel~~~r~qg~ 125 (361)
.|||.. ..+|-||+.-..++.--. .||..|||||.||-+..+
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~l 148 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESL 148 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhh
Confidence 577765 556666666555554211 367889999999987653
No 28
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.14 E-value=1.4e+02 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=31.2
Q ss_pred CCCCcHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 241 LEPLTEQQL-----IDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITE 283 (361)
Q Consensus 241 LepLTeqQl-----~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa 283 (361)
...|.++|. .+|+.|++.+.++.++ .+||.+++......+..
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~ 54 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQM 54 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGG
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcc
Confidence 446778775 3678888888887777 67888888887777643
No 29
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=38.96 E-value=22 Score=27.27 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccc
Q 036441 101 QQLESSRLKLAQLEQELDRARRQGIYTG 128 (361)
Q Consensus 101 q~le~sr~kl~qleqel~~~r~qg~~~~ 128 (361)
|.||.+|..+..||||+-+-|=.=+|+-
T Consensus 33 qeLe~Ck~sIrrLE~evn~ErFrmIYLQ 60 (72)
T 1k1f_A 33 QELERAKASIRRLEQEVNQERFRMIYLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5699999999999999998775556653
No 30
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=37.65 E-value=55 Score=25.34 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=28.1
Q ss_pred HhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 83 AQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD 118 (361)
Q Consensus 83 aqnreaarksrlrkkayvq~le~sr~kl~qleqel~ 118 (361)
..|+.+|-..=-|||.|=++|+.----+.+||+-+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777888888888887778888988764
No 31
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=36.37 E-value=27 Score=26.69 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 97 KAYVQQLESSRLKLAQLEQELDRA 120 (361)
Q Consensus 97 kayvq~le~sr~kl~qleqel~~~ 120 (361)
+.||+.||. +|.+||..|...
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHHHHHHHHHh
Confidence 469999999 999999999854
No 32
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=34.54 E-value=33 Score=25.69 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 97 KAYVQQLESSRLKLAQLEQELDRA 120 (361)
Q Consensus 97 kayvq~le~sr~kl~qleqel~~~ 120 (361)
+.||+.||. ++.+||..|...
T Consensus 44 ~~~~~~L~~---r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVES---RLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHH
Confidence 469999999 999999999864
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.66 E-value=24 Score=24.67 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q 036441 97 KAYVQQLESS 106 (361)
Q Consensus 97 kayvq~le~s 106 (361)
|||+--||+-
T Consensus 2 KaYl~eLE~r 11 (42)
T 2oqq_A 2 SAYLSELENR 11 (42)
T ss_dssp CHHHHHHHHH
T ss_pred chhHHHHHHH
Confidence 7899988883
No 34
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.01 E-value=1.4e+02 Score=24.23 Aligned_cols=73 Identities=32% Similarity=0.374 Sum_probs=38.2
Q ss_pred hHhHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccccccCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 036441 93 RLRKKAYVQQLESSRLKLA----QLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELR 168 (361)
Q Consensus 93 rlrkkayvq~le~sr~kl~----qleqel~~~r~qg~~~~~~~~~~~~~~~~~~~~g~~~F~~~Y~~Wleeq~~~l~eLr 168 (361)
.|||| |..||..+-+|. .||-+|.+.--||-|-....-.-|+. .||.+.++..- ..=++.++..+..||
T Consensus 16 ~lr~e--i~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~----~NPa~~a~~~~-~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 16 TLRLK--VEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMS----LNPTSVARQRL-REDHSQLQAECERLR 88 (100)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEES----SCHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeec----CChHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34544 455555544444 36777776545566643221112332 66766665542 344555566666666
Q ss_pred HHHh
Q 036441 169 NALQ 172 (361)
Q Consensus 169 ~AL~ 172 (361)
..+.
T Consensus 89 ~~v~ 92 (100)
T 1go4_E 89 GLLR 92 (100)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6553
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.33 E-value=51 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=23.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441 93 RLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123 (361)
Q Consensus 93 rlrkkayvq~le~sr~kl~qleqel~~~r~q 123 (361)
.+.--.||.+|+. ++++||.||...|.+
T Consensus 35 ~~E~q~~v~ql~~---~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 35 KTESQRVVLQLKG---HVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444589999999 999999999987743
No 36
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=25.93 E-value=43 Score=24.89 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 95 RKKAYVQQLESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 95 rkkayvq~le~sr~kl~qleqel~~~r~ 122 (361)
-+.|||+-|+. |+..|||.+.-|.+
T Consensus 31 qReayV~gll~---~i~eleq~~~~a~~ 55 (58)
T 3e1r_A 31 QREVYVKGLLA---KIFELEKKTETAAH 55 (58)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHC----
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhh
Confidence 34689999998 89999998876653
No 37
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=24.74 E-value=4.1e+02 Score=26.40 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 036441 295 MVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRL 346 (361)
Q Consensus 295 m~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLlAl~e~~~rL 346 (361)
+..|-.++..|......+..+-..++.-..+=-...+.-+|+--+.+|...+
T Consensus 325 l~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~f 376 (457)
T 3obv_E 325 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMF 376 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5556677788888888777665555554432111122345666555554443
No 38
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.07 E-value=1.6e+02 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 94 LRKKAYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 94 lrkkayvq~le~sr~kl~qleqel~~~r 121 (361)
||||. .++|+--.-.+..||.++.|.+
T Consensus 45 LKkkl-~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 45 LKKHK-ENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55444 4555555555556666666544
No 39
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=22.78 E-value=4.8e+02 Score=24.51 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 036441 147 TAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGL 188 (361)
Q Consensus 147 ~~F~~~Y~~Wleeq~~~l~eLr~AL~s~~~d~eL~~LVd~~l 188 (361)
..|...|..=+++....+..|..|...-.+...|+.+++-++
T Consensus 100 ~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL 141 (340)
T 1v9d_A 100 ILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL 141 (340)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC----
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 445555655555556666666666544333345555555543
No 40
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=22.14 E-value=5.9e+02 Score=25.29 Aligned_cols=82 Identities=10% Similarity=0.185 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCchH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036441 265 ALQQGIDKLQQSLVQIITEEQLSSGIYQ----SQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALG 340 (361)
Q Consensus 265 aLsq~ma~LQqslad~~aa~~lg~~~~~----~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLlAl~ 340 (361)
.|..++..++..+......+.-....+. .-+..|-.++..|+..+..+...-..++.-.-+=-+..+.-+|+--+.
T Consensus 303 ~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~~ 382 (483)
T 2j1d_G 303 TLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFD 382 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4555566666555433211111111222 235567788888888888888777777665543222223446666666
Q ss_pred HHHHHH
Q 036441 341 EYFHRL 346 (361)
Q Consensus 341 e~~~rL 346 (361)
+|...+
T Consensus 383 ~F~~~f 388 (483)
T 2j1d_G 383 QFLQAV 388 (483)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 41
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=21.84 E-value=23 Score=34.79 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=7.0
Q ss_pred HhhHHHHHHhhHhHH
Q 036441 83 AQNREAARKSRLRKK 97 (361)
Q Consensus 83 aqnreaarksrlrkk 97 (361)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 478999999998876
No 42
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=21.81 E-value=28 Score=24.61 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036441 97 KAYVQQLESSRLKLAQLE 114 (361)
Q Consensus 97 kayvq~le~sr~kl~qle 114 (361)
+.||+.||. +|.+||
T Consensus 51 ~~~~~~Le~---rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVES---RLERLE 65 (66)
T ss_dssp HHHHHHHHH---HHTTC-
T ss_pred HHHHHHHHH---HHHHHc
Confidence 579999999 888887
No 43
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.66 E-value=74 Score=23.50 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 98 AYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 98 ayvq~le~sr~kl~qleqel~~~r 121 (361)
+-||+||- .-++-|||+.|.+
T Consensus 25 ~kv~~Le~---~c~e~eQEieRL~ 45 (58)
T 3a2a_A 25 AKIQHLEF---SCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 56888888 6677899999875
No 44
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.44 E-value=73 Score=24.21 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441 98 AYVQQLESSRLKLAQLEQELDRARRQ 123 (361)
Q Consensus 98 ayvq~le~sr~kl~qleqel~~~r~q 123 (361)
.||..|+. +...|+.|++..+++
T Consensus 47 ~YI~~L~~---~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 47 EYIQYMRR---KNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 48888887 555555555555543
No 45
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=21.25 E-value=2.4e+02 Score=22.00 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=10.3
Q ss_pred HHHHHHHhHHHHHHHHH
Q 036441 306 ESFVNQADHLRQQTMQQ 322 (361)
Q Consensus 306 e~fl~qAD~LR~qTL~~ 322 (361)
..|-++|..||.+.+-+
T Consensus 50 ~~F~~~A~~l~rkmwwk 66 (91)
T 3hd7_A 50 SQFETSAAKLKRKYWWK 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666554
Done!