Query 036441
Match_columns 361
No_of_seqs 180 out of 245
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 21:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036441.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036441hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 65.6 1.8 0.00013 31.9 2.7 20 78-97 49-68 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 51.2 5.3 0.00038 28.6 3.0 28 100-127 32-59 (67)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 36.1 14 0.001 25.2 3.3 22 98-122 33-54 (61)
4 d2c35a1 a.60.8.2 (A:14-142) RN 23.6 27 0.0019 27.1 3.3 77 177-255 41-120 (129)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 23.5 82 0.006 24.4 6.3 37 238-274 79-115 (129)
6 d1uuja_ a.221.1.1 (A:) Lissenc 23.1 30 0.0022 25.1 3.2 20 326-345 1-20 (76)
7 d1v9da_ a.207.1.1 (A:) Diaphan 22.5 1.1E+02 0.0082 26.4 7.9 53 295-347 249-301 (332)
8 d1zbdb_ g.50.1.1 (B:) Effector 18.0 74 0.0054 24.0 4.8 40 242-281 1-40 (124)
9 d1urfa_ a.2.6.1 (A:) Protein k 16.5 51 0.0037 23.9 3.3 27 98-124 46-73 (81)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 16.1 57 0.0041 23.2 3.5 21 98-121 52-72 (88)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=65.56 E-value=1.8 Score=31.91 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=17.5
Q ss_pred HHHHHHhhHHHHHHhhHhHH
Q 036441 78 TQRRLAQNREAARKSRLRKK 97 (361)
Q Consensus 78 ~~rrlaqnreaarksrlrkk 97 (361)
-.||=..|+-||++||.||-
T Consensus 49 DIRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 49 KIRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhhh
Confidence 35888999999999999974
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.18 E-value=5.3 Score=28.65 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036441 100 VQQLESSRLKLAQLEQELDRARRQGIYT 127 (361)
Q Consensus 100 vq~le~sr~kl~qleqel~~~r~qg~~~ 127 (361)
-|.||.++..+..|||||-+-|=.-+|+
T Consensus 32 E~eLerCk~~irrLeqel~~ErF~~iYL 59 (67)
T d1k1fa_ 32 EQELERAKASIRRLEQEVNQERFRMIYL 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998777555555
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.14 E-value=14 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441 98 AYVQQLESSRLKLAQLEQELDRARR 122 (361)
Q Consensus 98 ayvq~le~sr~kl~qleqel~~~r~ 122 (361)
.||+.|+. +...|++|....|.
T Consensus 33 ~YI~~Lq~---~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 33 DYIKYLQQ---VNHKLRQENMVLKL 54 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 79999999 77788888876664
No 4
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.61 E-value=27 Score=27.13 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccCCCCChHHHHHHHhccCCchhh--HHhhcCCCC-CCcHHHHHHHH
Q 036441 177 DIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSEL--LNILMPQLE-PLTEQQLIDVC 253 (361)
Q Consensus 177 d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~l--lkLL~~~Le-pLTeqQl~~I~ 253 (361)
+.+|..+..+.+.|-...-+.+..-+...|..+++..=.++.|.+ =|+..+|+.+ ++.|+|+++ .+|++++..|=
T Consensus 41 ~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~li~~l~~r~see~l~~iL 118 (129)
T d2c35a1 41 EQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKALIPSLEGRFEDEELQQIL 118 (129)
T ss_dssp SCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHHHHHHhccCCCHHHHHHHH
Confidence 456777888888765544334555566778888877778888887 4688888865 446678886 68999988774
Q ss_pred HH
Q 036441 254 NL 255 (361)
Q Consensus 254 ~L 255 (361)
+.
T Consensus 119 d~ 120 (129)
T d2c35a1 119 DD 120 (129)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.53 E-value=82 Score=24.40 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=29.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 238 MPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQ 274 (361)
Q Consensus 238 ~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQ 274 (361)
.|.++.-.+.|+.+|..|+.+.+.++..+.+.+.+..
T Consensus 79 LP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 79 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666678999999999999999988877665544
No 6
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.10 E-value=30 Score=25.12 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 036441 326 VLTTRQAARALLALGEYFHR 345 (361)
Q Consensus 326 ILTp~QAA~fLlAl~e~~~r 345 (361)
|||++|+.+-=-||.+|+..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~~ 20 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLRS 20 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999998853
No 7
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.52 E-value=1.1e+02 Score=26.36 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 036441 295 MVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLR 347 (361)
Q Consensus 295 m~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLlAl~e~~~rLR 347 (361)
+..|..++..|...+.+++..-.+++.-.-+--+..+.-+|+--+.+|...+.
T Consensus 249 l~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~ 301 (332)
T d1v9da_ 249 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFL 301 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677899999999999997777776666544444456778877777765554
No 8
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.05 E-value=74 Score=24.01 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441 242 EPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQII 281 (361)
Q Consensus 242 epLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~ 281 (361)
++||+++...|.++-++-...+..-.+++.++.+.+.+.-
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~ 40 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMR 40 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789998888877777777777777788888888776653
No 9
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.49 E-value=51 Score=23.91 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhhc
Q 036441 98 AYVQ-QLESSRLKLAQLEQELDRARRQG 124 (361)
Q Consensus 98 ayvq-~le~sr~kl~qleqel~~~r~qg 124 (361)
+.+| .|..|..||..|.++|++++|.+
T Consensus 46 ~eaq~~l~eS~~Ki~lLr~~L~~~~q~~ 73 (81)
T d1urfa_ 46 LTAQQMLQDSKTKIDIIRMQLRRALQAD 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444 58889999999999999999875
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.13 E-value=57 Score=23.16 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036441 98 AYVQQLESSRLKLAQLEQELDRAR 121 (361)
Q Consensus 98 ayvq~le~sr~kl~qleqel~~~r 121 (361)
.||++|+. ++..|+.++...+
T Consensus 52 ~yI~~L~~---~~~~l~~~~~~l~ 72 (88)
T d1nkpa_ 52 AYILSVQA---EEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 68888877 4555544444333
Done!